RPSBLAST alignment for GI: 254780193 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 105 bits (265), Expect = 2e-23
Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 12/221 (5%)
Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLR 355
GKS+ IL V+ TV GE +AL+G +GAGKT++ I+ P SGS+ +G D+
Sbjct: 8 AGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT 65
Query: 356 LLSLEEI-RRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLE 413
L E R I +VP+ I +V +N+ +G R+ + A L + +E L+
Sbjct: 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA--YARRRAKRKARLERVYELFPRLK 123
Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-Q 472
A LS G+ Q +AIARA++ +LLLDE L + ++I++ +RE +
Sbjct: 124 ----ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 473 RRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
G T + A++ AD +VL +V +G ELL
Sbjct: 180 DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220