RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family,
fused ATPase and inner membrane subunits [Candidatus Liberibacter
asiaticus str. psy62]
(528 letters)
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 356 bits (916), Expect = 6e-99
Identities = 159/500 (31%), Positives = 282/500 (56%), Gaps = 5/500 (1%)
Query: 20 VLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTE 79
+ L+ A+A+++R GER++ ++ D+ +++ +FF+ GE+ S L DT+
Sbjct: 197 LFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQ 256
Query: 80 RIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFS---RKKT 136
+ + +S LR+L+ GFG + MF +S +L+L+ + +V + +V + RK +
Sbjct: 257 IVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLS 316
Query: 137 NTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIAC 196
+ + +++ ++ ++SF A ++ ++ Y+ + ++ K + A+
Sbjct: 317 KQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFG 376
Query: 197 FVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIA 256
+ + + G H V T + G L+ F++Y +S+ F + + +
Sbjct: 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVG 436
Query: 257 SLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPG 316
+ R+ EL+ K I P++ P + G + F VSF YP + +LKN++FT++PG
Sbjct: 437 ASERVFELMDRKPRI--PLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG 494
Query: 317 ETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMI 376
E +ALVG SG+GK++I SL+LRFYDP SG + ++G+ + ++ + +RR I V Q P++
Sbjct: 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554
Query: 377 AASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIA 436
+ S+ +NIA G +AT +EI+ AA +A AHEFI +GY+T++G+ LS GQ QRIA
Sbjct: 555 SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIA 614
Query: 437 IARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFV 496
IARA+L++ +L+LDE SALD E+E + + L +GRT + +HRLS ++ AD + V
Sbjct: 615 IARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVV 674
Query: 497 LHDQVIVEKGVHEELLKKSG 516
+ +VE G H+ELL K
Sbjct: 675 IDKGRVVEMGTHDELLSKPN 694
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 338 bits (867), Expect = 3e-93
Identities = 183/521 (35%), Positives = 314/521 (60%), Gaps = 9/521 (1%)
Query: 3 SVFLDKRDVSLYLWGMFVL-LLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSF 61
++ D ++ L + +L LL V +L+ Y + LG++++ ++RD+ K+++L SF
Sbjct: 43 ALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSF 102
Query: 62 FNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIV 121
F+ G++ S L D E + ++ + +V S+L+ G++ ++F +S +L+LI++ I+
Sbjct: 103 FDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLIL 162
Query: 122 TLFLMVMIKFSRK--KTNTLYADEKKLLN-IFSDMIKSVMVLQSFNAGKEAIRLYDIQSQ 178
L +V+ +RK K + + LN + + + V+++F A ++ ++ ++
Sbjct: 163 PLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANE 222
Query: 179 KTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFF 238
+ + LR++ + +A ++ S G +V +G V + + G LA F++Y
Sbjct: 223 ELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLL 282
Query: 239 ASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYP 298
I + + +A A+ RL EL+ + ++ P +GS+ F +VSF YP
Sbjct: 283 TPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLK---DTIGSIEFENVSFSYP 339
Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358
GK + +LK+++F+++PGE +A+VG SG+GK+++ L+LR YDP SG + I+GID+R +S
Sbjct: 340 GK--KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS 397
Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDT 418
L+ +R+ I V Q P++ + ++ +NIA+G P AT +EI+ A LA AHEFI L +GYDT
Sbjct: 398 LDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDT 457
Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTT 478
I+G+ V+LS GQ QR+AIARA+L++ PIL+LDE SALD E E I L++ +GRTT
Sbjct: 458 IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTT 517
Query: 479 IFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
+ +HRLS I++AD + VL + IVE+G HEELL K G YA
Sbjct: 518 LIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYA 558
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 333 bits (856), Expect = 6e-92
Identities = 163/521 (31%), Positives = 283/521 (54%), Gaps = 14/521 (2%)
Query: 18 MFVLLLLA--VASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGH-GEIFSIL 74
+F+ L + + + L++Y + GE++ ++ + +++ +F+ + G + S L
Sbjct: 712 IFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRL 771
Query: 75 VKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR- 133
D ++A +G +S+V++++ + + F+ +L+L+V++ L ++ +
Sbjct: 772 ATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKF 831
Query: 134 -KKTNTLYADE-KKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIR 191
K + ++ I + + ++ + + A ++ + LY + +K K + LI
Sbjct: 832 LKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLIS 891
Query: 192 T---CIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFA-SIRSCLGF 247
+ ++FFV + F GA ++ EM + V A F A ++ +
Sbjct: 892 GLGFGFSQSLLFFVYA---LSFWYGARLISNGEMTFEDVFR-VFMALSFTAMALGQASSY 947
Query: 248 IGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILK 307
IS+A + + E++ K I +S V G + FR+VSF YP + +L
Sbjct: 948 APDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLN 1007
Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIA 367
N++ +++ G+T+ALVG SG+GK+++ SL+ RFYDP +G V+I+G+D++ L+L+ +R+ I
Sbjct: 1008 NLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067
Query: 368 WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHL 427
V Q P++ ++ +NIA G + +EI AA LA AH FI L GYDT +G+ V L
Sbjct: 1068 LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQL 1127
Query: 428 STGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSA 487
S GQ QRIAIARAIL++ ILLLDE SALD E+E+ + + L GRTTI +HRLS
Sbjct: 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST 1187
Query: 488 IQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMSQ 528
IQ+AD++ VL + +VE+G H+ELL K G Y L S
Sbjct: 1188 IQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQSSA 1228
Score = 321 bits (824), Expect = 3e-88
Identities = 169/534 (31%), Positives = 272/534 (50%), Gaps = 16/534 (2%)
Query: 1 MTSVFLD------KRDVSLYLWGMFVL-LLLAVASSLRYYCATMLGERMILFMQRDVIAK 53
+T V D +VS L + + ++ ++ C GER ++ +
Sbjct: 54 LTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKA 113
Query: 54 IIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKL 113
I++ +F++ GE+ + L D E I+ IG + ++ L + F KL
Sbjct: 114 ILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKL 173
Query: 114 SLIVVSIVTLFLMVMIKFSR------KKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGK 167
+L+++S + L + +R +K YA K +I ++I S+ + +FN K
Sbjct: 174 TLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYA---KAGSIAEEVISSIRTVYAFNGEK 230
Query: 168 EAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKL 227
+ I Y + K ++ L + F F + + F G+ + G +
Sbjct: 231 KEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDV 290
Query: 228 AEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGS 287
I S+ + ++A A+ R+ E I K I S + G
Sbjct: 291 ITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGE 350
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ FR+V F YP + ILK V+ + G+T+ALVG SG+GK+++ L+ RFYDP SG V
Sbjct: 351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV 410
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
I+G D+R L+L+ +R I V Q P++ A ++ +NI G P ATR+EI+ AA A AH+
Sbjct: 411 LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHD 470
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
FI L +GYDT++G+ V LS GQ QRIAIARA++++ ILLLDE SALD E+E+ + +
Sbjct: 471 FILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQE 530
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHY 521
L + +GRTTI +HRLS I++AD + V+ + IVE+G H+EL+ G Y+
Sbjct: 531 ALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSL 584
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 294 bits (754), Expect = 5e-80
Identities = 163/506 (32%), Positives = 262/506 (51%), Gaps = 6/506 (1%)
Query: 18 MFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKD 77
+ L A+ LR Y LG+R+ L + +++L S+F R GEI S V++
Sbjct: 201 LLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISR-VRE 259
Query: 78 TERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMI---KFSRK 134
E+I+ + + ++ LL + +MF+ S KL+LIV++ + L +++ + R+
Sbjct: 260 LEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRR 319
Query: 135 KTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCI 194
KT L + + + + IK + +++ A +D + K ++ + +
Sbjct: 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379
Query: 195 ACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQA 254
++ GA V E+ G+L F + A F + I QA
Sbjct: 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQA 439
Query: 255 IASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQ 314
+L RL +++ + + + G + F +VSF Y G +L++++ +
Sbjct: 440 KVALERLGDILDTPPEQEGD-KTLIHLPKLQGEIEFENVSFRY-GPDDPPVLEDLSLEIP 497
Query: 315 PGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPI 374
PGE +A+VG SG+GK+++ L+L Y P G + ++G+DL + L +RR + +V Q P
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557
Query: 375 MIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQR 434
+ + S+ +NIA+G P AT +EI AA LA AHEFI L GYDT +G+G +LS GQ QR
Sbjct: 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617
Query: 435 IAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMV 494
+A+ARA+L ILLLDE SALD E E I + L + +GRT I +HRLS I+ AD +
Sbjct: 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRI 677
Query: 495 FVLHDQVIVEKGVHEELLKKSGFYAH 520
VL IVE+G HEELL + G YA
Sbjct: 678 IVLDQGKIVEQGSHEELLAQGGLYAR 703
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 278 bits (714), Expect = 2e-75
Identities = 108/238 (45%), Positives = 160/238 (67%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ F++VSF YP + ILK ++ T+ PG+T+ALVG SG GK+++ SL+ RFYDP SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
++G+D+R L+L +R I V Q P++ ++ +NI G P AT +E++ AA A H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
FI L +GYDT++G+ LS GQ QRIAIARA+L++ ILLLDE SALD E+E+ + +
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILG 525
L +GRTTI +HRLS I++AD++ VL + +VE+G H+EL+ + G YA
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 273 bits (699), Expect = 1e-73
Identities = 116/235 (49%), Positives = 157/235 (66%), Gaps = 1/235 (0%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
V F++V+F YPG +L++++ + GET+ALVG SG+GK+++ +LI RFYD SG +
Sbjct: 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
I+G D+R +L +RR I V Q + +V +NIA G P ATR+E++ AA A AHE
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
FI L GYDT++G+ V LS GQ QRIAIARA+LKD PIL+LDE SALD E+E+ +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYH 522
L + RTT +HRLS I++AD + VL D IVE+G HEELL + G YA H
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 254 bits (651), Expect = 4e-68
Identities = 113/232 (48%), Positives = 156/232 (67%), Gaps = 2/232 (0%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ F +V+F Y R +LK+V+FT+ G+ +A+VG SG+GK++I L+ RFYD SGS+
Sbjct: 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
I+G D+R ++L+ +RR I VPQ ++ ++ NI G P AT +E+ AA AQ H+
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
I +GYDTI+G+ + LS G+ QR+AIARAILK+ PILLLDE SALD E++I
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
LR+ +GRTTI +HRLS I +AD + VL D IVE+G HEELL K G YA
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA 230
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 245 bits (626), Expect = 3e-65
Identities = 142/531 (26%), Positives = 260/531 (48%), Gaps = 18/531 (3%)
Query: 2 TSVFLDKRDVSLYLWGMFVLLLLAVASSLRYYCATM---LGERMILFMQRDVIAKIIKLS 58
T + + SL + +L+ L + + L + + ++ +++ V+ K+ KL
Sbjct: 28 TKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLG 87
Query: 59 PSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVV 118
P+F + G ++ ++ E+++ + + S ++ + +F + +LI++
Sbjct: 88 PAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILL 147
Query: 119 ---SIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGK-EAIRLYD 174
++ LF++++ ++ + ++ +L F D ++ + L++F + R+
Sbjct: 148 ITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRK 207
Query: 175 IQSQ--KTYKGFLRSALIRTCIACFVI-FFVSCGIFIV-FLIGAHYVATAEMPRGKLAEF 230
K LR A + + V+ FF I +V IG + ++
Sbjct: 208 DSEDFRKATMSVLRIAFLSS----AVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFV 263
Query: 231 VVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSF 290
++ A FF +R F + A+ +L L+ + + +S
Sbjct: 264 LILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISL 323
Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350
++SF YP L ++N T++ G+ ALVG SGAGK+++ +L+L F P G + +
Sbjct: 324 ENLSFRYPDGKPA--LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381
Query: 351 GIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIG 410
GIDLR LS E R+ I+WV Q+P + A ++ +NI + P A+ +EI A A EF+
Sbjct: 382 GIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP 441
Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
+G DT++G+G LS GQ QR+A+ARA+L + +LLLDE + LD E EQ I + L+
Sbjct: 442 -KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500
Query: 471 EQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHY 521
E + +T + +HRL DAD + VL + +VE+G HEEL +K G YA+
Sbjct: 501 ELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 243 bits (623), Expect = 6e-65
Identities = 106/231 (45%), Positives = 161/231 (69%), Gaps = 2/231 (0%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
G + F +V+F Y K+ +LK++NF+++PGET+A+VG +GAGKT++ +L++RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
+ I+GID+R +S + +R I V Q + + ++ +NI +G P+AT +E+ AA A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
H+FI L NGYDT+LG+ +LS G+ Q +AIARA+L+D IL+LDE S +D E E+ I
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516
+ L + +GRT+I +HRLS I++AD + VL D I+E+G H+ELL K G
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 237 bits (607), Expect = 5e-63
Identities = 165/482 (34%), Positives = 252/482 (52%), Gaps = 22/482 (4%)
Query: 50 VIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAII-GIGMSIVLRSLLMGFGAMCMMFV 108
+ LS F R G + + + T+ I+ I+ I +I+ + + A+ + V
Sbjct: 21 TFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80
Query: 109 ISIKLSLIVVSIVTLFLMVMIKFS------RKKTNTLYADEKKLLNIFSDMIKSVMVLQS 162
+L + V L+L+ + S R+ N +D D + + ++
Sbjct: 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAI---DSLLNFETVKY 137
Query: 163 FNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEM 222
F + YD + +TY+ A I+ ++ V+ F IF L ++ +
Sbjct: 138 FGNEEYEAVRYD-HALETYEK----AAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGV 192
Query: 223 PRGKLAE--FV-VYAFIFFASIRSC-LGFI-GGISQAIASLRRLRELIVCKLDISSPISS 277
G+L V V A +F SI LGF I QA+ + ++ +L+ + ++S +
Sbjct: 193 EEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDA 252
Query: 278 RTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL 337
LG+V+F +VSF Y + R IL ++FT+ G+T+A+VG+SGAGK++I L+
Sbjct: 253 PPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF 310
Query: 338 RFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQ 397
RFYD SGS+ I+G D+R ++ + +RR I VPQ ++ ++ NI G P AT +E+
Sbjct: 311 RFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVG 370
Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
AA AQ H+FI L GYDT +G+ + LS G+ QR+AIAR ILK+ PIL+LDE SAL
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430
Query: 458 DIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGF 517
D EQ I LRE GRTT+ +HRLS I DAD + VL + IVE+G HEELL G
Sbjct: 431 DTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGL 490
Query: 518 YA 519
YA
Sbjct: 491 YA 492
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 226 bits (577), Expect = 1e-59
Identities = 149/489 (30%), Positives = 239/489 (48%), Gaps = 18/489 (3%)
Query: 48 RDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIV---LRSLLMGFGAMC 104
DV ++ L SFF SRG G + I+ + + I ++ + + L + + G +
Sbjct: 111 SDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILY 170
Query: 105 MMFVISIKLSLIVVSIVTLFLMVMIKFSRKKTN---TLYADEKKLLNIFSDMIKSVMVLQ 161
F +LI + V + I +R + + + D + + +++
Sbjct: 171 YKF--GAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVK 228
Query: 162 SFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAE 221
SFN + YD S KTY+ R+ L + F+ F IF V L + +
Sbjct: 229 SFNNEEYEASRYD-GSLKTYE---RAGLKYSSSLAFLNFGQKA-IFSVALTFIMVLGSNG 283
Query: 222 MPRGKLAE-FVVYAFIFFASIRSCLGFIGGI-SQAIASLRRLRELIVCKLDISSPISSRT 279
+ GK+ +V + L F+G + + +L +R L + +
Sbjct: 284 IAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAAL 343
Query: 280 FPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF 339
GS+ F V F Y KR +LK V+FT+ GE +A+VG +G+GK++I L+LRF
Sbjct: 344 PIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF 401
Query: 340 YDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNA 399
+D SGS+ I+G D++ +SLE +R+ I VPQ ++ ++ NI G P A+ +E+ A
Sbjct: 402 FDY-SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEA 460
Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
A H+ I L +GY T++G+ + LS G+ QR+++ARA LKD+PILLLDE SALD
Sbjct: 461 CKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDS 520
Query: 460 ENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
E E++I ++ + GRT I HRL ++D D + VL + + E G H ELL S YA
Sbjct: 521 ETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYA 580
Query: 520 HYHILGMSQ 528
S
Sbjct: 581 DLWTTQTSS 589
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 223 bits (570), Expect = 8e-59
Identities = 141/495 (28%), Positives = 238/495 (48%), Gaps = 24/495 (4%)
Query: 36 TMLGERMILFMQRDVIAKIIK----LSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSI 91
T L + + R++ ++ + LS + +R GE+ ++ + T + + + I
Sbjct: 280 TFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQI 339
Query: 92 VLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSRKKTN---TLYADEKKLLN 148
L +G + +I LIV ++ L+ V IK + +T + +
Sbjct: 340 GPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRA 399
Query: 149 IFSDMIKSVMVLQSFNAG-------KEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFF 201
D + + ++ +NA +EAI Y Q K+ +++ I
Sbjct: 400 RQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL---- 455
Query: 202 VSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRL 261
G+ L+ A+ V + G F+ Y + + + I + + +
Sbjct: 456 ---GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENM 512
Query: 262 RELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIAL 321
+L+ + ++ + G + F +V+F Y + +L +++FTVQPG+T+AL
Sbjct: 513 FDLLKEEPEVVDLPGAPPLKVTQ-GKIEFSNVTFAY--DPGKPVLSDISFTVQPGKTVAL 569
Query: 322 VGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVY 381
VG SGAGK++I L+ RF+D SGS+ I+G D+R ++ +R I VPQ ++ ++
Sbjct: 570 VGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTIL 629
Query: 382 DNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAI 441
NI P A+ +E+ AA AQ H+ I GY+T +G+ + LS G+ QR+AIAR I
Sbjct: 630 YNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI 689
Query: 442 LKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501
LK I+LLDE SALD E+ I L RTTI +HRLS I +AD++ V+ +
Sbjct: 690 LKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGR 749
Query: 502 IVEKGVHEELLKKSG 516
IVE+G HEELLK+ G
Sbjct: 750 IVERGRHEELLKRDG 764
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 220 bits (562), Expect = 8e-58
Identities = 122/483 (25%), Positives = 228/483 (47%), Gaps = 9/483 (1%)
Query: 41 RMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGF 100
R++ ++ + K+ LSP+ G++ + LV D + + + ++ + +L++
Sbjct: 88 RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147
Query: 101 GAMCMMFVISIKLSLIVVSIVTLFLMVM----IKFSRKKTNTLYADEKKLLNIFSDMIKS 156
+ SI L+L++ I+ L L+++ + RK L L + F+D ++
Sbjct: 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQG 207
Query: 157 VMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHY 216
L F A + K + A ++ + + L A
Sbjct: 208 QAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ 267
Query: 217 VATAEMPRGKLAEFVVYAFIFFASIRSCL-GFIGGISQAIASLRRLRELIVCKLDISSPI 275
V + + A ++ F + G + Q IAS RRL +++ K +++ P
Sbjct: 268 VGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD 327
Query: 276 SSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL 335
L R+VSF YPG+ LKN N T+ GE +A++G SG+GK+++ L
Sbjct: 328 EQTATTGQAL---ELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383
Query: 336 ILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKE 395
+ +DP GS+ + G+++ L + +R I+ + Q + + ++ DN+ + P A+ +E
Sbjct: 384 LAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE 443
Query: 396 IQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGS 455
+ A + + +G +T LG+G LS G+ +R+A+ARA+L D+P+ LLDE
Sbjct: 444 LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503
Query: 456 ALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKS 515
LD E+++ +L E G+T + +HRL ++ D + VL + I+E+G H ELL +
Sbjct: 504 GLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563
Query: 516 GFY 518
G Y
Sbjct: 564 GRY 566
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 207 bits (529), Expect = 6e-54
Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 1/221 (0%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
G + FR+VSF YP + L NV+ T++ GE +A++G G+GK+++ L+ Y P SG
Sbjct: 1 GRIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
SV ++G D+R L ++RR I +VPQ + ++ DNI +G P A + I AA LA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
+F+ NG D +G+ LS GQ Q +A+ARA+L D PILLLDE SA+D+ +E+++
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
+ LR+ +T I +HR S + D + V+ IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 207 bits (528), Expect = 6e-54
Identities = 99/237 (41%), Positives = 146/237 (61%), Gaps = 1/237 (0%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
++F V F Y IL N++ ++PGE + +VG SG+GK+++ LI RFY P +G V
Sbjct: 1 ITFEHVRFRYKPDG-PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
++G DL L +RR + V Q ++ S+ DNIA+ P + + + AA LA AH+
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
FI L GYDTI+G+ LS GQ QRIAIARA++ + IL+ DE SALD E+E I +
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHIL 524
+ + GRT I +HRLS +++AD + V+ IVE+G H+ELL ++G YA+ + L
Sbjct: 180 NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQL 236
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 197 bits (502), Expect = 8e-51
Identities = 90/212 (42%), Positives = 126/212 (59%), Gaps = 43/212 (20%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ F++VSF YPG+ K +LK+V+ T++PGE +A+VG SG+GK+++ L+LR YDP SG +
Sbjct: 1 IEFKNVSFSYPGRPKP-VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
I+G+DLR L LE +R+ IA+VPQ P + + ++ +NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
LS GQ QRIAIARA+L+D PIL+LDE SALD E E I +
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHD 499
LR +G+T I +HRLS I+DAD + VL D
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 193 bits (491), Expect = 1e-49
Identities = 86/217 (39%), Positives = 136/217 (62%)
Query: 281 PSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY 340
P + G V F++V+F YP + +L++V+FT+ PGE ALVG SG+GK+++ +L+ FY
Sbjct: 5 PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64
Query: 341 DPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA 400
P G V ++G + + + ++ V Q P++ A S+ DNIA G + + ++ AA
Sbjct: 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAA 124
Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
A AH FI L +GYDT +G+ LS GQ QR+AIARA++++ +L+LDE SALD E
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 461 NEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVL 497
+EQ++ + L + RT + +HRLS ++ AD + VL
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVL 221
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 186 bits (473), Expect = 1e-47
Identities = 116/520 (22%), Positives = 234/520 (45%), Gaps = 26/520 (5%)
Query: 18 MFVLLLLAVASSL----RYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSI 73
+ V LL VASSL R + G + + ++ I++ SFF++ G I +
Sbjct: 861 LGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNR 920
Query: 74 LVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKF-- 131
KD + + ++ + L+SLL G + ++ ++ + ++ + ++ V +
Sbjct: 921 FSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLA 980
Query: 132 -SRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYD------IQSQKTYKGF 184
SR+ + + FS+ ++ + +++F + I+ D ++
Sbjct: 981 TSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA 1040
Query: 185 LRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSC 244
R +R + ++ ++ ++ G + + YA ++
Sbjct: 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLS-------LSYALQLTGLLQWL 1093
Query: 245 LGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPS--PVLGSVSFRSVSFVYPGKSK 302
+ + + S+ R+ E + I P P G + F +S Y +
Sbjct: 1094 VRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRY-RPNL 1152
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
+LK ++FT++PGE + +VG +GAGK+S+ + R +P G + I+G+D+ + L ++
Sbjct: 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212
Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
R ++ +PQ P++ + +V N+ + + EI A Q + + L G D+ + +
Sbjct: 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEY-SDDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271
Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
G + S GQ Q + +ARA+L+ S IL+LDE +++D E + I K +RE+ + T + +
Sbjct: 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIA 1331
Query: 483 HRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG--FYAH 520
HRL+ + D+D V VL +VE ELL F +
Sbjct: 1332 HRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSL 1371
Score = 166 bits (423), Expect = 1e-41
Identities = 132/524 (25%), Positives = 241/524 (45%), Gaps = 46/524 (8%)
Query: 13 LYLWGMFVLLLLAVAS-SLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIF 71
L +F+ LL ++ + +G R+ + + K ++LS S GEI
Sbjct: 243 LLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIV 302
Query: 72 SILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKF 131
+++ D +R+ + ++ + L A+ +++ + S + V + L+ + F
Sbjct: 303 NLMSVDAQRLSDA-ACFLHLLWSAPLQIILALYLLY-GLLGPSALAGVAVMVLLIPLNSF 360
Query: 132 SRKKTNTLYADEKKL----LNIFSDMIKSVMVL------QSFNAGKEAIRLYDIQSQKTY 181
KK K + + ++++ + V+ + F E +R ++ K
Sbjct: 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKEL---KLL 417
Query: 182 KGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASI 241
+ + + + + F VS F+VF++ + TA F A F +
Sbjct: 418 RKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTA------FTSLAL--FNIL 469
Query: 242 RSCLGF----IGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVY 297
R L I + QA SL+RL+E ++ + + + ++ ++ SF +
Sbjct: 470 RFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGEN-AIEIKNGSFSW 528
Query: 298 PGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLL 357
+S LK++NF ++ G+ +A+VG G+GK+S+ S IL SGSV + G
Sbjct: 529 DSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----- 583
Query: 358 SLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF-IGCLENGY 416
+A+VPQ P + +V +NI G P+ +E + + A A + + L G
Sbjct: 584 --------VAYVPQQPWIQNGTVRENILFGSPY--DEERYDKVIKACALKKDLEILPFGD 633
Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK-VLREQRRG 475
T +G+ ++LS GQ QRI++ARA+ +D+ I LLD+ SA+D + I++ +R RG
Sbjct: 634 LTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRG 693
Query: 476 RTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
+T I +H+L + AD + VL D IVE G +EELLK G +A
Sbjct: 694 KTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFA 737
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 179 bits (456), Expect = 1e-45
Identities = 96/267 (35%), Positives = 146/267 (54%), Gaps = 8/267 (2%)
Query: 250 GISQAIASLRRLRELIVCKLDISSPISSRTFPSP-VLGSVSFRSVSFVYPGKSKRSILKN 308
A S +RL EL+ P ++ P P G++S ++ PG K+ ILK
Sbjct: 301 QFVAARQSYKRLNELL-----AELPAAAERMPLPAPQGALSVERLTAAPPG-QKKPILKG 354
Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAW 368
++F +Q GE + ++G SG+GK+++ L++ + P SGSV ++G DLR E++ R I +
Sbjct: 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY 414
Query: 369 VPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428
+PQ + ++ +NIA A +++ AA LA HE I L GYDT +G+G LS
Sbjct: 415 LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLS 474
Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGRTTIFASHRLSA 487
GQ QRIA+ARA+ D +++LDE S LD E E + + + RG T + +HR SA
Sbjct: 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSA 534
Query: 488 IQDADMVFVLHDQVIVEKGVHEELLKK 514
+ D + VL D I G EE+L K
Sbjct: 535 LASVDKILVLQDGRIAAFGPREEVLAK 561
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 178 bits (453), Expect = 3e-45
Identities = 73/221 (33%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
G + F++VS Y +LKN++F+++PGE + +VG +G+GK+S+ + R + SG
Sbjct: 1 GDIEFKNVSLRYRPNLP-PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
S+ I+G+D+ + L ++R I+ +PQ P++ + ++ N+ + + +E+ A
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEY-SDEELWQALERVGL 118
Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
EF+ L G DT++ +G +LS GQ Q + +ARA+L+ S IL+LDE +++D E + I
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
K +RE + T + +HRL I D+D + VL +VE
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 141 bits (356), Expect = 7e-34
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 10/215 (4%)
Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
+++SF YP R L +++ T++ GE + +VG +G+GK+++ L+ P SG V
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 349 IEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
++G DL LSL+E+RR + V Q+P +V + +A G + E + + +A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
E +G + LS GQ QR+AIA + D ILLLDE + LD +++
Sbjct: 120 ELVGLEGLRDRSPF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174
Query: 467 KVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHD 499
++L++ + G+T I +H L + + AD V VL D
Sbjct: 175 ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 137 bits (346), Expect = 8e-33
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 44/216 (20%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ +VSF YPG ++ +L+NV+F+++PGE++A++G SG+GK+++ LIL P SG V
Sbjct: 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
++G D+ E+ + ++PQ + + S+ +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
LS GQ QR+ +ARA+ + IL+LDE S LD+E E+ + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 468 VLREQR-RGRTTIFASHRLSAIQDADMVFVLHDQVI 502
+ + G T I +HR + AD + VL D +
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 135 bits (341), Expect = 4e-32
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 288 VSFRSVSFVYP-GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ +++S Y G K LK V+ +++ GE +A+VG SG+GK+++ +++ P SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 347 VEIEGIDLRLLSLEEIRRF----IAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAM 401
V ++G D+ LS +E+ F I +V Q ++ + +N+ + A + +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 402 LAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
+ E +G LGD H LS GQ QR+AIARA+ D I+L DE L
Sbjct: 121 AEELLERVG---------LGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNL 171
Query: 458 DIENEQKIWKVLREQRR--GRTTIFASHRLSAIQDADMVFVLHDQVI 502
D E +++ ++LRE + G T + +H + AD + L D I
Sbjct: 172 DSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 134 bits (340), Expect = 5e-32
Identities = 75/243 (30%), Positives = 131/243 (53%), Gaps = 12/243 (4%)
Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ ++SF Y G + IL +++F++ GE ++G +G+GK+++ + P SG
Sbjct: 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIG-CPHATRKEIQNAAMLAQ 404
V ++G D+ LS +E+ + +A+VPQ P +VY+ + +G PH +
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 405 AHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
E + L + L D V LS G+ QR+ IARA+ +++PILLLDE S LDI ++
Sbjct: 119 VEEALELLGLEH---LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 464 KIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAH 520
++ ++LR+ + +G T + H L+ A + AD + +L D IV +G EE+L +
Sbjct: 176 EVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREV 235
Query: 521 YHI 523
Y +
Sbjct: 236 YGV 238
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 131 bits (332), Expect = 3e-31
Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 26/240 (10%)
Query: 288 VSFRSVSFVYPGKSKRSI--LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
+ +VS + ++ L +V+ + GE ++G SGAGK+++ LI P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 346 SVEIEGIDLRLLS---LEEIRRFIAWVPQHP-IMIAASVYDNIAIGCPHA--TRKEIQNA 399
SV ++G DL LS L ++R+ I + QH ++ + +V++N+A A + EI+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK-- 119
Query: 400 AMLAQAHEFIGCLENGYDTILGDGA----VHLSTGQIQRIAIARAILKDSPILLLDEMGS 455
+A+ E +G L D A LS GQ QR+AIARA+ + ILL DE S
Sbjct: 120 QRVAELLELVG---------LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 456 ALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
ALD E Q I ++L++ + G T + +H + ++ D V VL +VE+G E+
Sbjct: 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 130 bits (329), Expect = 8e-31
Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 41/219 (18%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+S +VSF YP + ++ +LKN++ ++ GE IAL+G SG+GK+++ L+ P G +
Sbjct: 1 LSINNVSFSYPEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
++G+ + L + + I+ + Q P + ++ +N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNLGR--------------------- 97
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
S G+ QR+A+AR +L+D+PI+LLDE LD E+++
Sbjct: 98 ------------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
++ E + +T I+ +H L+ I+ D + L + I+ +G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 130 bits (328), Expect = 1e-30
Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 15/233 (6%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----P 342
+ R ++ Y + LK+++ + GE AL+G SG GK+++ L+ R D P
Sbjct: 1 IELRDLNVYY---GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 343 CSGSVEIEGIDLRLLS--LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HATRKEIQNA 399
G V ++G D+ L + E+RR + V Q P S+YDN+A G H + + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
+ +A + D + A+ LS GQ QR+ +ARA+ + +LLLDE SALD
Sbjct: 118 ERVEEALRKAALWDEVKDRL---HALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174
Query: 460 ENEQKIWKVLREQRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
+ KI +++ E ++ T + +H + A + AD L + +VE G E++
Sbjct: 175 ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 129 bits (325), Expect = 2e-30
Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R+++ Y ++ L V+F V+PGE L+G +GAGKT++ ++ P SG +
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAH 406
+ G D+ ++RR I +VPQ P + +V +N+ + + + +
Sbjct: 63 LVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
E G + + LS G QR++IA A+L D +L+LDE S LD E+ ++IW
Sbjct: 122 ELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 467 KVLREQRR--GRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKKSG 516
++LRE + G T + ++H L A + D V +L+D I+ +G EEL +K G
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 127 bits (322), Expect = 6e-30
Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 22/218 (10%)
Query: 288 VSFRSVSFVYPGKSKRS--ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
+S SF + + + LK++N V GE +A+VG G+GK+S+ S +L + SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLA 403
SV + G IA+V Q P + ++ +NI G P +++ A L
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
+ L +G T +G+ ++LS GQ QRI++ARA+ D+ I LLD+ SA+D +
Sbjct: 108 PD---LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 464 KIWK--VLREQRRGRTTIFASHRLSAIQDADMVFVLHD 499
I++ +L +T I +H+L + AD + VL +
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 127 bits (321), Expect = 6e-30
Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 283 PVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP 342
P G + ++S Y +LKNV+F V+ GE I +VG +GAGK+++ + RF +
Sbjct: 2 PEHGEIEVENLSVRY-APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 343 CSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAML 402
G +EI+GID+ + LE++R + +PQ P + + ++ N+ + +EI A +
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP-FDEYSDEEIYGALRV 119
Query: 403 AQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462
++ G ++LS GQ Q + +ARA+LK +L+LDE +++D +
Sbjct: 120 SE------------------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161
Query: 463 QKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
I K +RE+ T + +HRL I D D + V+ + E
Sbjct: 162 ALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 126 bits (319), Expect = 1e-29
Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 18/232 (7%)
Query: 288 VSFRSVSFVYP-GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ +++S +P G L +V+F+++ GET+ LVG+SG+GK+++ IL P SGS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 347 VEIEGIDLRLLS---LEEIRRFIAWVPQ------HPIMIAASVYDNIAIGCPHATRKEIQ 397
+ +G DL LS + R+ I V Q +P M ++ + IA + +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
A A +G + +L LS GQ QR+AIARA+ + +L+ DE SAL
Sbjct: 119 EARKEAVLLLLVGVGLP--EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSAL 176
Query: 458 DIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
D+ + +I +L++ + G T +F +H L + AD V V++ IVE+G
Sbjct: 177 DVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 126 bits (317), Expect = 2e-29
Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 13/237 (5%)
Query: 288 VSFRSVSFVYPGKSKRSI-LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ ++VS V+ + LK+V+ +V GE ++G SGAGK+++ I P SGS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 347 VEIEGIDLRLLS---LEEIRRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAML 402
V ++G DL LLS L + RR I + QH ++ + +V++N+A+ A + + +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 403 AQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462
+ E +G LE+ D LS GQ QR+ IARA+ + +LL DE SALD E
Sbjct: 122 LELLELVG-LEDKADAYPAQ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 463 QKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSG 516
Q I +LR+ + G T + +H + ++ D V V+ +VE+G EE+
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 124 bits (313), Expect = 6e-29
Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 22/239 (9%)
Query: 287 SVSFRSVSFVYPGKSKRS-ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
+S R++S VY G L NV+ ++ GET+ +VG+SG+GK+++ L+ P SG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 346 SVEIEGIDL-RLLSLEEIRRFIAWVPQHPI-------MIAASVYDNIAIGCPHATRKEIQ 397
S+ ++G L + R + V Q P + + + + +++ I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
+ L LS GQ QRIAIARA++ + +L+LDE SAL
Sbjct: 123 ELLDQVGLPP----------SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 458 DIENEQKIWKVLREQRRGR--TTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
D+ + +I +L E ++ R T +F SH L+ ++ D + V+ + IVE G EELL
Sbjct: 173 DVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 122 bits (308), Expect = 2e-28
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
L +++ TV+PGE +AL+G SG GKT++ LI P SG + I+G D + + RR
Sbjct: 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD--VTGVPPERR 72
Query: 365 FIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
I V Q + +V +NIA G + + A + + E +G L +
Sbjct: 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVG------LEGLLNR 126
Query: 424 AVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIF 480
H LS GQ QR+A+ARA+ ++ +LLLDE SALD + +++ + L+E + G TTI+
Sbjct: 127 YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186
Query: 481 ASHRLS-AIQDADMVFVLHDQVIVEKG 506
+H A+ AD + V+++ IV+ G
Sbjct: 187 VTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 122 bits (307), Expect = 3e-28
Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 12/229 (5%)
Query: 288 VSFRSVSFVYP-GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ ++VS +Y G K LK+VN ++ GE +A+VG SG+GK+++ +L+ P SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 347 VEIEGIDLRLLSLEEI----RRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAM 401
V I G DL LS +E+ R+ I +V Q ++ +V +N+ + A + +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 402 LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
+ E +G D +L LS GQ QR+AIARA++ + I+L DE LD +
Sbjct: 122 AEELLEVLG----LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
Query: 462 EQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVH 508
+++ ++LRE + RG+T I +H + AD V L D I E+ +
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEEELD 226
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 120 bits (303), Expect = 1e-27
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 44/219 (20%)
Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350
++S Y G R++L +++ +++ GE + ++G +GAGK+++ + P SG + ++
Sbjct: 3 ENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 351 GIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIG 410
G DL LS +E+ R IA+VPQ ++ + A
Sbjct: 60 GKDLASLSPKELARKIAYVPQ-----------------------ALELLGLAHLADRPFN 96
Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
LS G+ QR+ +ARA+ ++ PILLLDE S LDI ++ ++ ++LR
Sbjct: 97 ---------------ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 471 E--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKG 506
+ RG+T + H L+ A + AD V +L D IV +G
Sbjct: 142 RLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 119 bits (300), Expect = 2e-27
Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ F +V+ Y G K + N+N + GE + L+G SG+GKT+ +I R +P SG +
Sbjct: 1 IEFENVTKRYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQH----PIMIAASVYDNIAI-----GCPHATRKEIQN 398
I+G D+R E+RR I +V Q P M +V +NIA+ P +E
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHM---TVEENIALVPKLLKWPKEKIRE--- 112
Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
+A E + + LS GQ QR+ +ARA+ D P+LL+DE ALD
Sbjct: 113 -----RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
Query: 459 -IENEQKIWKVLREQRR-GRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELL 512
I +Q + R Q+ G+T +F +H + A + AD + ++ + IV+ G +E+L
Sbjct: 168 PITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 119 bits (300), Expect = 2e-27
Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 13/233 (5%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ ++SF YPG+ LK+V+ ++ GE + L+G +G+GK+++ L+ P SG V
Sbjct: 4 IEAENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 348 EIEGIDLRL-LSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQ 404
++G+D SL E+R+ + V Q+P + +V D +A G + + +A+
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464
A E +G E +LS GQ QR+AIA + ILLLDE + LD + ++
Sbjct: 122 ALELVGLEELLDRPPF-----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 465 IWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKK 514
+ ++L++ + G+T I +H L + + AD V VL D I+ G E+
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 119 bits (299), Expect = 2e-27
Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R +S + G L V+ TV+PGE AL+G++GAGK+++ ++ Y P SG +
Sbjct: 9 LELRGISKSFGGVK---ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 348 EIEGIDLRLLSLEEIRRF-IAWVPQHPIMIAA-SVYDNIAIGC-PHATRKEIQNAAMLAQ 404
I+G + S + IA V Q ++ SV +NI +G P I AM +
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464
A E + L G D LS Q Q + IARA+ D+ +L+LDE +AL ++ ++
Sbjct: 126 ARELLARL--GLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER 183
Query: 465 IWKVLREQR-RGRTTIFASHRLSAIQD-ADMVFVLHDQVIV 503
++ ++R + +G I+ SHRL + + AD + VL D +V
Sbjct: 184 LFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 84.8 bits (210), Expect = 5e-17
Identities = 54/215 (25%), Positives = 103/215 (47%), Gaps = 16/215 (7%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-L 359
S +++V+FTV+ GE + + G GAG+T + + SG + ++G +R+ S
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329
Query: 360 EEIRRFIAWVP----QHPIMIAASVYDNIAIGC--PHATRKEIQNAAMLAQAHEFIGCLE 413
+ I+ IA+VP +++ S+ +NI + + R I A A +I L
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR 389
Query: 414 ---NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
+ +G LS G Q++ +AR + D +L+LDE +D+ + +I++++R
Sbjct: 390 IKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIR 445
Query: 471 EQ-RRGRTTIFASHRLS-AIQDADMVFVLHDQVIV 503
E G+ + S L + +D + V+ + IV
Sbjct: 446 ELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 118 bits (296), Expect = 5e-27
Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 27/237 (11%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
++ R+VS + + + +++ ++ GE + L+G SG GKT++ +I F P SG
Sbjct: 4 PALEIRNVSKSFGDFT---AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQH----PIMIAASVYDNIAIG---CPHATRKEIQN 398
+ ++G D+ + E +R I V Q P M +V +N+A G + EI
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHM---TVEENVAFGLKVRKKLKKAEI-- 113
Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
A + +A E +G LE D H LS GQ QR+A+ARA++ + +LLLDE SAL
Sbjct: 114 KARVEEALELVG-LEG-----FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 458 DIENEQKIWKVLRE--QRRGRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEEL 511
D + +++ K L+E + G T ++ +H + A+ +D + V++D I + G EE+
Sbjct: 168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 118 bits (296), Expect = 6e-27
Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 10/231 (4%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ F +VS Y + + +VN T++ GE + L+G SG+GKT+ +I R +P SG +
Sbjct: 2 IEFENVSKRY---GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
I+G D+ L E+RR I +V Q + +V +NIA P + +A
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VP--KLLGWDKERIKKRAD 115
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
E + + LS GQ QR+ +ARA+ D PILL+DE ALD +++
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175
Query: 467 KVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK 514
+ ++E + G+T +F +H + A++ AD + V+ IV+ +E+L
Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 117 bits (295), Expect = 7e-27
Identities = 61/215 (28%), Positives = 109/215 (50%), Gaps = 48/215 (22%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R++S Y K++ L +++ TV+ GE L+G +GAGKT++ +IL P SG +
Sbjct: 1 IEVRNLSKRYG---KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAH 406
++ G D++ EE++R I ++P+ P + +V +N+
Sbjct: 58 KVLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
LS G QR+A+A+A+L D +L+LDE S LD E+ ++ W
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 467 KVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHD 499
++LRE ++ G+T + +SH L + D V +L++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNN 170
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 117 bits (295), Expect = 7e-27
Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ +++ Y R +L++++ +V+ GE AL+G +GAGK+++ IL P SG +
Sbjct: 5 IEVENLTVSY---GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIA---ASVYDNIAIGCPHAT----RKEIQNAA 400
+I G +R R I +VPQ + +V D + +G R ++
Sbjct: 62 KIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
+ +A E +G + I LS GQ QR+ +ARA+ ++ +LLLDE + +D+
Sbjct: 119 KVDEALERVGMEDLRDRQI-----GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 461 NEQKIWKVLREQRR-GRTTIFASHRLSAI-QDADMVFVLHDQVI 502
+++I+ +L+E R+ G+T + +H L + D V L+ +I
Sbjct: 174 GQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 115 bits (290), Expect = 3e-26
Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 22/240 (9%)
Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ +++S YPG LK+VN + GE +A++G SGAGK+++ + DP SG
Sbjct: 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 347 VEIEGIDLRLLS---LEEIRRFIAWVPQHPIMIA-ASVYDNIAIG--CPHATRKEI---- 396
+ G+ + L L ++RR I + Q ++ SV +N+ +G +T + +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 397 --QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454
++ A A E +G L+ Y A LS GQ QR+AIARA+++ I+L DE
Sbjct: 121 SKEDKAQALDALERVGILDKAYQR-----ASTLSGGQQQRVAIARALVQQPKIILADEPV 175
Query: 455 SALDIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
++LD E+ +K+ +L++ Q G T I H++ A + AD + L IV G EL
Sbjct: 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 115 bits (289), Expect = 3e-26
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 26/240 (10%)
Query: 285 LGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344
+ + ++V + +LK+VN ++ GE + L+G SG GK+++ +I +P S
Sbjct: 1 MAELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57
Query: 345 GSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMI-AASVYDNIAIG------CPHATRKEIQ 397
G + I+G D+ L +R IA V Q+ + +VY+NIA G K ++
Sbjct: 58 GEILIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK 115
Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
A L + LS GQ QR+A+ARA+++ + LLDE S L
Sbjct: 116 EVAKLLGLEHLLNRKPLQ-----------LSGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 458 DIENEQKIWKVLRE--QRRGRTTIFASHR-LSAIQDADMVFVLHDQVIVEKGVHEELLKK 514
D + + +++ +R G TTI+ +H + A+ AD + V++D I + G EL ++
Sbjct: 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 115 bits (289), Expect = 4e-26
Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 28/226 (12%)
Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
++ Y G +L++V+F V+PGE +A+VG +GAGK+++ IL P SGS+
Sbjct: 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 349 IEGIDLRLLSLEEIRRFIAWVPQHPIM---IAASVYDNIAIGC-------PHATRKEIQN 398
+ G LE+ R+ I +VPQ + SV D + +G ++ +
Sbjct: 58 VFG-----KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
+A E +G E I LS GQ QR+ +ARA+++D +LLLDE + +D
Sbjct: 113 VD---EALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 459 IENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVI 502
+ ++ I+++LRE +R G T + +H L + + D V +L+ V+
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 114 bits (288), Expect = 5e-26
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 27/221 (12%)
Query: 288 VSFRSVSFVYPGKSKR-SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ R+VS Y G + L++++ +V+ GE +ALVG SG GK+++ +I P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIG--CPHATRKEIQNAAMLA 403
V ++G + +V Q ++ +V DN+A+G + E + A
Sbjct: 61 VLVDG-----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAE-- 113
Query: 404 QAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
+ E +G L LS G QR+A+ARA+ D +LLLDE SALD
Sbjct: 114 ELLELVG---------LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 460 ENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVL 497
+++ + L + + G+T + +H + A+ AD V VL
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 114 bits (288), Expect = 5e-26
Identities = 82/270 (30%), Positives = 131/270 (48%), Gaps = 20/270 (7%)
Query: 257 SLRRLRELIVCKLDISSPISSRTFPSPVLG----SVSFRSVSFVYPGKSKR-SILKNVNF 311
L + + I P P+L S + S ++ + + +V+F
Sbjct: 253 GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312
Query: 312 TVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS--LEEIRRFIAWV 369
++ GET+ LVG+SG+GK+++ ++ P SGS+ +G DL L L +RR I V
Sbjct: 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 370 PQHP---IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN-GYDTILGDGAV 425
Q P + +V D +A P A A+ E LE G D
Sbjct: 373 FQDPYSSLNPRMTVGDILAE--PLRIHGGGSGAERRARVAE---LLELVGLPPEFLDRYP 427
Query: 426 H-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFAS 482
H LS GQ QR+AIARA+ + +L+LDE SALD+ + ++ +L++ + G T +F S
Sbjct: 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFIS 487
Query: 483 HRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
H L+ ++ AD V V++D IVE+G E++
Sbjct: 488 HDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517
Score = 112 bits (282), Expect = 2e-25
Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 31/255 (12%)
Query: 281 PSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY 340
L V +V F G +++V+F V+PGE + +VG+SG+GK+++ ++
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVP-AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLL 59
Query: 341 DP----CSGSVEIEGIDLRLLSLEEIRRF----IAWVPQHPIMIAASVYDNIAIGC---- 388
SG V ++G DL LS E+R+ IA + Q P S+ + IG
Sbjct: 60 PEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP---MTSLNPVMTIGDQIRE 116
Query: 389 PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH------LSTGQIQRIAIARAIL 442
+ A +A E + + L D LS G QR+ IA A+
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVG------LPDPERRDRYPHQLSGGMRQRVMIAMALA 170
Query: 443 KDSPILLLDEMGSALDIENEQKIWKVLREQRR--GRTTIFASHRLSAIQD-ADMVFVLHD 499
+L+ DE +ALD+ + +I +L++ +R G +F +H L + + AD V V++
Sbjct: 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230
Query: 500 QVIVEKGVHEELLKK 514
IVE G EE+L
Sbjct: 231 GEIVETGPTEEILSN 245
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 114 bits (287), Expect = 6e-26
Identities = 69/218 (31%), Positives = 119/218 (54%), Gaps = 2/218 (0%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
+ +LK+V ++PG+ + + G +G+GK+S+ R D G + I+GID+ L L +
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93
Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
R ++ + Q PI+ + S+ N+ C T + A +AQ + L G D ++ +
Sbjct: 94 RSRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE 152
Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
G + S GQ Q +ARA ++ S IL++DE +++D+ E + KV+ RT + +
Sbjct: 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIA 212
Query: 483 HRLSAIQDADMVFVLHDQVIVEKGVHEELL-KKSGFYA 519
HR+S I DAD+V VL ++VE E LL ++ G +A
Sbjct: 213 HRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFA 250
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 113 bits (285), Expect = 9e-26
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 25/218 (11%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ VS + G +L+++N +V+ GE +A++G SG GK+++ LI P SG V
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
++G + I +V Q ++ +V DN+A+G + + + +
Sbjct: 61 LLDGRPVT-----GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 407 EFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462
E +G L LS G QR+AIARA+ +LLLDE ALD
Sbjct: 116 ELVG---------LAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166
Query: 463 QKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVL 497
+++ L + +T + +H + A+ AD V VL
Sbjct: 167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVL 204
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 111 bits (279), Expect = 5e-25
Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 24/247 (9%)
Query: 284 VLGSVSFRSVSFVYPGKSKRSILK---------NVNFTVQPGETIALVGDSGAGKTSIFS 334
+ G ++ + GKSK ILK +V+ V+ GE ++G SG+GK+++
Sbjct: 9 IFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLR 68
Query: 335 LILRFYDPCSGSVEIEGIDLRLLS---LEEIRR-FIAWVPQH-PIMIAASVYDNIAIGCP 389
I R +P SG V I+G D+ +S L E+RR I+ V Q ++ +V +N+A G
Sbjct: 69 CINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128
Query: 390 HATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILL 449
+ A+A E +G LE + LS G QR+ +ARA+ D ILL
Sbjct: 129 VQGVPRAEREERAAEALELVG-LEGWEHKYPDE----LSGGMQQRVGLARALAVDPDILL 183
Query: 450 LDEMGSALD--IENEQKIWKVLREQR-RGRTTIFASHRLS-AIQDADMVFVLHDQVIVEK 505
+DE SALD I E + ++LR Q +T +F +H L A++ D + ++ D +V+
Sbjct: 184 MDEAFSALDPLIRREMQD-ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV 242
Query: 506 GVHEELL 512
G EE+L
Sbjct: 243 GTPEEIL 249
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 110 bits (276), Expect = 1e-24
Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 13/222 (5%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
LKNV+ V+ G+ ++G +G+GK+ + I F P SG + + G D+ L E +R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 366 IAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424
I++VPQ + + +VY NIA G + + + + E +G D +L
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI-----DHLLNRKP 127
Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR--GRTTIFAS 482
LS G+ QR+AIARA++ + ILLLDE SALD+ ++K+ + L++ R+ G T + +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 483 HRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKK--SGFYAHY 521
H AD V ++ + +++ G EE+ KK + F A +
Sbjct: 188 HDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEF 229
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 109 bits (275), Expect = 1e-24
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 43/211 (20%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
+ V+F+++ GET+ LVG+SG GK+++ LIL +P SG + EG D+ LS EE R
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRER 88
Query: 366 IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAV 425
+ ++ + + PH
Sbjct: 89 VL-----ELLEKVGLPEEFLYRYPH----------------------------------- 108
Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASH 483
LS GQ QRI IARA+ + +++ DE SALD+ + +I +L++ + G T +F SH
Sbjct: 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168
Query: 484 RLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
LS ++ +D + V++ IVE G EE+
Sbjct: 169 DLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 109 bits (274), Expect = 2e-24
Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 27/229 (11%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ F +VS YPG R L++V+F + GE + L G SGAGK+++ LI P G +
Sbjct: 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 348 EIEGIDLRLLSLEEI---RRFIAWVPQ-HPIMIAASVYDNIA-----IGCPHATRKEIQN 398
+ G DL L EI RR I V Q ++ +VY+N+A IG P +EI+
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP---PREIRR 116
Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
+ + +G LS G+ QR+AIARAI+ +LL DE LD
Sbjct: 117 RVS--EVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 459 IENEQKIWKVLRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
+ +I ++ E R G T + A+H L + H + +E G
Sbjct: 170 PDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR-----HRVLALEDG 213
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 108 bits (271), Expect = 4e-24
Identities = 68/216 (31%), Positives = 103/216 (47%), Gaps = 48/216 (22%)
Query: 290 FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349
++VS Y K+ +L +V+ ++ GE +AL+G SG+GK+++ I +P SGS+ I
Sbjct: 3 LKNVSKRYGQKT---VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
Query: 350 EGIDLRLLS--LEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
+G DL L L +RR I V Q + +V +NIA+G
Sbjct: 60 DGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------- 100
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
LS GQ QR+A+ARA+ D +LLLDE SALD +++
Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 467 KVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHD 499
+L+ + G T + +H L A + AD V VL D
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 108 bits (271), Expect = 5e-24
Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 24/241 (9%)
Query: 292 SVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC-----SGS 346
SVSF + + V+F ++ GE + +VG+SG+GK+ + I+ G
Sbjct: 8 SVSFPTDAGVVK-AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 347 VEIEGIDLRLLSLEEIRRF----IAWVPQ------HPIM-IAASVYDNIAIGCPHATRKE 395
+ +G DL LS +E+R+ IA + Q +P+M I + + + + ++KE
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKE 126
Query: 396 IQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGS 455
+ A+ + E +G + + + L LS G QR+ IA A+ + +L+ DE +
Sbjct: 127 AKERAI--ELLELVG-IPDP-ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTT 182
Query: 456 ALDIENEQKIWKVLREQRR--GRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEELL 512
ALD+ + +I +L+E +R G I +H L + + AD V V++ IVE+G EE+
Sbjct: 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
Query: 513 K 513
K
Sbjct: 243 K 243
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 108 bits (270), Expect = 5e-24
Identities = 63/213 (29%), Positives = 92/213 (43%), Gaps = 60/213 (28%)
Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
++SF Y G R+ L NV+ T++ GE +ALVG +G+GK+++ I P SG +
Sbjct: 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 349 IEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408
I+G D IA R+ I + Q
Sbjct: 58 IDGKD------------------------------IAKLPLEELRRRI---GYVPQ---- 80
Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468
LS GQ QR+A+ARA+L + +LLLDE S LD + +++ ++
Sbjct: 81 ------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 469 LRE-QRRGRTTIFASHRLSAIQDA-DMVFVLHD 499
LRE GRT I +H + A D V VL D
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKD 155
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 107 bits (270), Expect = 6e-24
Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 14/233 (6%)
Query: 290 FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349
++S YP + LK+V+ ++ PGE +AL+G SGAGK+++ + +P SGSV I
Sbjct: 3 VENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 350 EGIDLRLLS---LEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQA 405
+G D+ L L ++RR I + Q +I SV +N+ G R ++ L
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR-LGRRSTWRSLFGLFPK 119
Query: 406 HEFIGCLEN----GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
E L G A LS GQ QR+AIARA+++ ++L DE ++LD +
Sbjct: 120 EEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179
Query: 462 EQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
+++ +L+ + G T I + H++ A + AD + L D IV G EL
Sbjct: 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 107 bits (269), Expect = 7e-24
Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 20/236 (8%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R ++ + G R++LK V+ V+ GE +A++G SG+GK+++ LI+ P SG V
Sbjct: 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 348 EIEGIDLRLLS---LEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHATR---KEIQNAA 400
I+G D+ LS L +RR + + Q + + +V++N+A TR +EI+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
+ E +G L D + LS G +R+A+ARA+ D +LL DE + LD
Sbjct: 118 LEKL--EAVG-LRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 461 NEQKIWKVLREQRR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
I ++R ++ G T+I +H L AD + VL+D IV +G EEL
Sbjct: 171 ASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 107 bits (268), Expect = 1e-23
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL-RLLSLEEIR 363
+LK ++ +V+ GE + ++G SG+GK+++ + +P SGS+ ++G D+ + ++R
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 364 RFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419
R + V Q P + +V +N+ + P +K + A +A E + +
Sbjct: 77 RKVGMVFQQFNLFPHL---TVLENVTLA-PVKVKKLSKAEAR-EKALELLEKVG------ 125
Query: 420 LGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR- 474
L D A LS GQ QR+AIARA+ D ++L DE SALD E ++ V+++
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 475 GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKS 515
G T I +H + ++ AD V + I+E+G EE
Sbjct: 186 GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 105 bits (265), Expect = 2e-23
Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 12/221 (5%)
Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLR 355
GKS+ IL V+ TV GE +AL+G +GAGKT++ I+ P SGS+ +G D+
Sbjct: 8 AGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT 65
Query: 356 LLSLEEI-RRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLE 413
L E R I +VP+ I +V +N+ +G R+ + A L + +E L+
Sbjct: 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA--YARRRAKRKARLERVYELFPRLK 123
Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-Q 472
A LS G+ Q +AIARA++ +LLLDE L + ++I++ +RE +
Sbjct: 124 ----ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 473 RRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
G T + A++ AD +VL +V +G ELL
Sbjct: 180 DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 105 bits (264), Expect = 3e-23
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 16/229 (6%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIR-R 364
L +++ ++ GE +AL+G SGAGK+++ +I P +G + + G L +S +R R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 365 FIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
+ +V QH + +V DNIA G ++ A + A+ E + ++ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFG-LKVRKERPSEAEIRARVEELLRLVQ------LEGL 130
Query: 424 A----VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRT 477
A LS GQ QR+A+ARA+ + +LLLDE ALD + +++ + LR+ R G T
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190
Query: 478 TIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILG 525
T+F +H A++ AD V VL+ I + G +E+ LG
Sbjct: 191 TVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLG 239
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 105 bits (264), Expect = 3e-23
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 19/236 (8%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R V+ + R IL V+ V GE +A++G SG+GK+++ LIL P G +
Sbjct: 9 IEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 348 EIEGIDLRLLS---LEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHAT---RKEIQNAA 400
I+G D+ LS L EIR+ + + Q + ++ +V++N+A T I+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
++ E +G D + LS G +R+A+ARAI D +L LDE S LD
Sbjct: 126 LMKL--ELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 461 NEQKIWKVLREQRR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
+ I +++RE G T I +H L ++ AD V VL D ++ +G EELL
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 105 bits (263), Expect = 4e-23
Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 13/219 (5%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI-RR 364
L +V+F+V+PGE L+G +GAGKT++F+LI F P SGSV +G D+ L EI R
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 365 FIAWVPQHP-IMIAASVYDNIAIGCPHATRKEI-------QNAAMLAQAHEFIGCLENGY 416
I Q P + +V +N+ + T + + +A E + + G
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GL 133
Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRG 475
+ A LS GQ +R+ IARA+ D +LLLDE + L+ E +++ +++RE + RG
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193
Query: 476 RTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
T + H + + AD V VL ++ +G +E+
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 103 bits (258), Expect = 1e-22
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 19/199 (9%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
IL N++ +V+ GE IA+ G SG GK+++ ++ P SG++ EG D+ L E
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
R+ +++ Q P + +V DN+ P R + A + D+IL
Sbjct: 74 AYRQQVSYCAQTPALFGDTVEDNLIF--PWQIRNRRPDRAAALD---LLARFALP-DSIL 127
Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIF 480
LS G+ QRIA+ R + ILLLDE+ SALD N++ I +++
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI----------- 176
Query: 481 ASHRLSAIQDADMVFVLHD 499
HR Q+ ++++ HD
Sbjct: 177 --HRYVREQNVAVLWITHD 193
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 103 bits (258), Expect = 1e-22
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 26/239 (10%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS--- 344
+ R ++ Y K LK++N + + AL+G SG GK+++ + R D
Sbjct: 8 IEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 345 --GSVEIEGIDLR--LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA 400
G V ++G ++ + + E+RR + V Q P S+YDN+A G I++
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG---LRLHGIKDKE 121
Query: 401 M-------LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453
+ L +A L + L A+ LS GQ QR+ IARA+ +LL+DE
Sbjct: 122 LDEIVESSLKKAA-----LWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEP 176
Query: 454 GSALDIENEQKIWKVLREQRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
SALD + KI +++ E ++ T + +H + A + +D + +VE G +++
Sbjct: 177 TSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 102 bits (255), Expect = 3e-22
Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 14/200 (7%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R+++ Y +K + +++ V GE L+G +GAGKT+ ++ P SG+
Sbjct: 1 LQIRNLTKTYKKGTKP-AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCP---HATRKEIQNAAMLA 403
I G +R + R+ + + PQ + +V +++ + + +L
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
+ + LS G +++++A A++ +LLLDE S LD + +
Sbjct: 119 RVLGLTDKA----NKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
Query: 464 KIWKVLREQRRGRTTIFASH 483
IW ++ E R+GR+ I +H
Sbjct: 171 AIWDLILEVRKGRSIILTTH 190
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 101 bits (254), Expect = 4e-22
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ +VS Y G L V+ ++ GE L+G SG GKT++ LI F P SG +
Sbjct: 1 IELENVSKFYGGFV---ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403
++G D + +L +R + V Q+ P + +V++NIA G + + +A
Sbjct: 58 LLDGKD--ITNLPPHKRPVNTVFQNYALFPHL---TVFENIAFGLRLKKLPKAEIKERVA 112
Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
+A + + LS GQ QR+AIARA++ + +LLLDE ALD++ +
Sbjct: 113 EALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
Query: 464 KIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
+ L+ + G T +F +H A+ +D + V++ I + G EE+
Sbjct: 168 DMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 101 bits (253), Expect = 6e-22
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
L +V+ + GE +AL+G SG+GKT++ LI P SG++ G D + ++E R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RN 75
Query: 366 IAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAA-MLAQAHEFIGC-----LENGYDT 418
+ +V QH + +V+DN+A G R E A + A+ HE + L + Y
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA 135
Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGR 476
LS GQ QR+A+ARA+ + +LLLDE ALD + +++ + LR
Sbjct: 136 -------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 477 TTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILG 525
TT+F +H + A++ AD V V++ I + G +E+ Y LG
Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFLG 238
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 100 bits (250), Expect = 1e-21
Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 9/220 (4%)
Query: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL 359
SK +++V+F + GE L+G++GAGKT++ +I P SG V I+G+D
Sbjct: 12 GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP- 70
Query: 360 EEIRRFIAWVP-QHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDT 418
+RR I + + + + +N+ A + + A+ E L
Sbjct: 71 SFVRRKIGVLFGERGLYARLTARENLKY---FARLNGLSRKEIKARIAELSKRL--QLLE 125
Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRT 477
L STG Q++AIARA++ D IL+LDE S LDI +K +++ + GR
Sbjct: 126 YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA 185
Query: 478 TIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSG 516
IF+SH + ++ D V VLH +V +G E L ++
Sbjct: 186 VIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 99 bits (249), Expect = 2e-21
Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 21/210 (10%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
+ V+FTV+PGE L+G +GAGKT+ ++ +P +G ++G D+ + E RR
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV-VKEPAEARRR 79
Query: 366 IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAML--AQAHEFIGCLENGYDTI---- 419
+ +V + +YD + R+ ++ A L + E LE D +
Sbjct: 80 LGFVSD-----STGLYDRLTA------RENLEYFAGLYGLKGDELTARLEELADRLGMEE 128
Query: 420 -LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRT 477
L STG Q++AIARA++ D P+LLLDE + LD+ + + + +R+ R G+
Sbjct: 129 LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 478 TIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
+F++H + ++ D V VLH +V +G
Sbjct: 189 ILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 99.5 bits (248), Expect = 2e-21
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 28/252 (11%)
Query: 281 PSPVLGSVSFRSVSF-VYPGKSKRSI-----LKNVNFTVQPGETIALVGDSGAGKTSIFS 334
+PVL V V F + G +R++ + ++ T++ G+T+ LVG+SG+GK+++
Sbjct: 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGL 331
Query: 335 LILRFYDPCSGSVEIEGIDLRLLSLEE---IRRFIAWVPQHP-------IMIAASVYDNI 384
+LR P G + +G D+ LS +E +RR + V Q P + + + + +
Sbjct: 332 ALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL 390
Query: 385 AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD-TILGDGAVHLSTGQIQRIAIARAILK 443
+ P + E + A E G D S GQ QRIAIARA++
Sbjct: 391 RVHEPKLSAAERDQRVIEALE-------EVGLDPATRNRYPHEFSGGQRQRIAIARALIL 443
Query: 444 DSPILLLDEMGSALDIENEQKIWKVLR--EQRRGRTTIFASHRLSAIQD-ADMVFVLHDQ 500
++LLDE SALD + ++ +LR +Q+ G + +F SH L+ ++ V V+ D
Sbjct: 444 KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503
Query: 501 VIVEKGVHEELL 512
IVE+G E +
Sbjct: 504 KIVEQGPTEAVF 515
Score = 90.7 bits (225), Expect = 1e-18
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 20/250 (8%)
Query: 279 TFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338
P+L S+ SV+F G + +K ++F ++ GET+ALVG+SG+GK+ IL
Sbjct: 1 MMTMPLL-SIRNLSVAFHQEGGT-VEAVKGISFDIEAGETLALVGESGSGKSVTALSILG 58
Query: 339 F--YDPC---SGSVEIEGIDLRLLSLEEIRRF----IAWVPQHPIMIAASVYDNIAIGCP 389
SGS+ +G DL S ++R I + Q P M + + I
Sbjct: 59 LLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP-MTSLNPLHTIGKQLA 117
Query: 390 HATRKEIQNAAMLAQAHEFIGCLEN-GYDT---ILGDGAVHLSTGQIQRIAIARAILKDS 445
R + A+A + LE G L LS GQ QR+ IA A+ +
Sbjct: 118 EVLRLHRGLSRAAARA-RALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEP 176
Query: 446 PILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVI 502
+L+ DE +ALD+ + +I +L+E G +F +H L ++ AD V+V+ I
Sbjct: 177 DLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236
Query: 503 VEKGVHEELL 512
VE G E L
Sbjct: 237 VETGTTETLF 246
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 99.2 bits (247), Expect = 2e-21
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 16/203 (7%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ F +V+ YP + L +N ++ GE + LVG SGAGK+++ LI + P SG++
Sbjct: 1 IEFINVTKTYPNGTAA--LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 348 EIEGID---LRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIG--CPHATRKEIQNAAM 401
+ G D LR ++ +RR I V Q ++ +VY+N+A +EI+
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 402 LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
A E +G L + + + LS G+ QR+AIARAI+ IL+ DE LD +
Sbjct: 119 --AALELVG-LSHKHRAL----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 462 EQKIWKVLRE-QRRGRTTIFASH 483
+I +L++ + G T + A+H
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATH 194
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 98.6 bits (246), Expect = 3e-21
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 12/231 (5%)
Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLR 355
GK + L+ V+ V+ GE +AL+G +GAGKT++ I+ P SG + +G D+
Sbjct: 11 AGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT 68
Query: 356 LLSLEEI-RRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLE 413
L E R IA+VP+ I +V +N+ +G +A R + L + +E L+
Sbjct: 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG-AYARRDKEAQERDLEEVYELFPRLK 127
Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473
+ G LS G+ Q +AIARA++ +LLLDE L + ++I++ ++E R
Sbjct: 128 ERRNQRAGT----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 474 R--GRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHY 521
+ G T + A++ AD +VL + IV G ELL Y
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 98.3 bits (245), Expect = 5e-21
Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 21/214 (9%)
Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
+ L ++N + GE + L+G SG GKT+ +I +P SG + I G D+ L ++
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71
Query: 362 IRRFIAWVPQ----HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417
R IA V Q +P M +VYDNIA G + + + + E + +
Sbjct: 72 --RDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-----E 121
Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD----IENEQKIWKVLREQR 473
+L LS GQ QR+A+ RAI+++ + L+DE S LD ++ ++ ++ +
Sbjct: 122 HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL- 180
Query: 474 RGRTTIFASH-RLSAIQDADMVFVLHDQVIVEKG 506
G TTI+ +H ++ A+ AD + V++D I + G
Sbjct: 181 -GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 97.9 bits (244), Expect = 6e-21
Identities = 59/211 (27%), Positives = 108/211 (51%), Gaps = 25/211 (11%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL--RLLSLEEI 362
+LK ++ TV+ GE + ++G SG+GK+++ I +P SG++ I+G+ L ++ E+
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74
Query: 363 RRFIAWVPQH----PIMIAASVYDNIAIG---CPHATRKEIQNAAMLAQAHEFIGCLE-- 413
R+ + V Q P + +V +NI + ++ E + A+ + E +G +
Sbjct: 75 RQKVGMVFQQFNLFPHL---TVLENITLAPIKVKGMSKAEAEERAL--ELLEKVGLADKA 129
Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-Q 472
+ Y LS GQ QR+AIARA+ + ++L DE SALD E ++ V+++
Sbjct: 130 DAY-------PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 473 RRGRTTIFASHRLSAIQD-ADMVFVLHDQVI 502
G T + +H + ++ AD V + D I
Sbjct: 183 EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 97.3 bits (242), Expect = 8e-21
Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 42/258 (16%)
Query: 284 VLGSVSFRSVSFVYPGKSKRSILK---------NVNFTVQPGETIALVGDSGAGKTSIFS 334
+ G R++ + GKSK ILK + + V+ GE ++G SG+GK+++
Sbjct: 13 IFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVR 72
Query: 335 LILRFYDPCSGSVEIEGIDLRLLSLEEIRRF----IAWVPQH-PIMIAASVYDNIAI--- 386
L+ R +P G + ++G D+ LS E+R I+ V Q ++ +V +N+A
Sbjct: 73 LLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132
Query: 387 --GCPHATRKE-----IQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIAR 439
G P A R+E ++ + A ++ LS G QR+ +AR
Sbjct: 133 VQGVPKAEREERALEALELVGLEGYADKYPN---------------ELSGGMQQRVGLAR 177
Query: 440 AILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFV 496
A+ D ILL+DE SALD ++ L E + +T +F +H L A++ D + +
Sbjct: 178 ALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI 237
Query: 497 LHDQVIVEKGVHEELLKK 514
+ D IV+ G EE+L
Sbjct: 238 MKDGEIVQVGTPEEILLN 255
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 96.4 bits (240), Expect = 2e-20
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 22/225 (9%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI-RR 364
+ +V+ V+PGE + L+G +GAGKT++F+LI FY P SG+V G D+ L I R
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 365 FIAWVPQHP-IMIAASVYDNIAIGC------------PHATRKEIQNAAMLAQAHEFIGC 411
IA Q + +V +N+A+G P A ++E + + EF+G
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
E A +LS GQ +R+ IARA+ +LLLDE + L+ E +++ +++RE
Sbjct: 140 GELADRP-----AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194
Query: 472 --QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
R G T + H + + AD + VL+ ++ +G EE+
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 96.5 bits (240), Expect = 2e-20
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGI 352
+SF Y ++ IL +++ + GE IAL G +GAGKT++ ++ SGS+ + G
Sbjct: 5 ISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG- 61
Query: 353 DLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIG 410
+ + +E R+ I +V Q + SV + + +G Q +L +
Sbjct: 62 --KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119
Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
+ LS GQ QR+AIA A+L +L+ DE S LD +N +++ +++R
Sbjct: 120 KERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 471 E-QRRGRTTIFASH 483
E +G+ I +H
Sbjct: 171 ELAAQGKAVIVITH 184
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 95.5 bits (237), Expect = 3e-20
Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 4/216 (1%)
Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIR 363
++L+N++F++ PG+ + L+G +G+GK+++ S LR + G ++I+G+ + L++ R
Sbjct: 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76
Query: 364 RFIAWVPQHPIMIAASVYDNI-AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
+ +PQ + + + N+ G + +EI A I D +L D
Sbjct: 77 KAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134
Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
G LS G Q + +AR++L + ILLLDE + LD Q I K L++ T I +
Sbjct: 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSE 194
Query: 483 HRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFY 518
HR+ A+ + V+ + + + ++LL + +
Sbjct: 195 HRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF 230
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 95.6 bits (238), Expect = 3e-20
Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 9/214 (4%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R ++ +PG +V+ +V+ GE AL+G++GAGK+++ ++ Y P SG +
Sbjct: 5 LEMRGITKRFPGVVA---NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 348 EIEGIDLRLLSLEEIRRF-IAWVPQHPIMI-AASVYDNIAIGCPHATRKEIQNAAMLAQA 405
++G ++R+ S + R I V QH +++ +V +NI +G + I A+
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121
Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
E G LS G+ QR+ I +A+ + + +L+LDE + L + ++
Sbjct: 122 KEL--SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179
Query: 466 WKVLREQRR-GRTTIFASHRLSAIQD-ADMVFVL 497
+++LR G+T IF +H+L + AD V VL
Sbjct: 180 FEILRRLAAEGKTIIFITHKLKEVMAIADRVTVL 213
Score = 75.2 bits (185), Expect = 4e-14
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL--RLLSLEEIR 363
+K+V+F V+ GE + + G +G G++ + I P SG + + G D+ RL E R
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 364 RFIAWVP----QHPIMIAASVYDNIAIGC----PHATRKEIQNAAMLAQAHEFIGCLENG 415
+A+VP H +++ S+ +N+ +G P + + A+ A E I
Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELI----EE 389
Query: 416 YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
+D A LS G Q++ +AR + + +L+ + LD+ + I + L E
Sbjct: 390 FDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449
Query: 473 RRGRTTIF-ASHRLSAIQD-ADMVFVLHDQVIV 503
R + S L I + +D + V+++ IV
Sbjct: 450 RDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 94.8 bits (236), Expect = 4e-20
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 277 SRTFPSPVLGSVSFRSVS--FVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFS 334
S+++P+ GS S + + + LK+V+F V GE I L+G +GAGK+++
Sbjct: 7 SKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLR 66
Query: 335 LILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HAT 392
L+ Y P SG+V + G LL L + +NI + +
Sbjct: 67 LLAGIYPPDSGTVTVRGRVSSLLGL-----------GGGFNPELTGRENIYLNGRLLGLS 115
Query: 393 RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
RKEI + + EF L + D + S+G R+A A A + ILL+DE
Sbjct: 116 RKEID--EKIDEIIEFSE-LGDFIDLPVK----TYSSGMKARLAFAIATALEPDILLIDE 168
Query: 453 MGSALDIENEQKIWKVLREQR-RGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
+ + D ++K + LRE +G+T I SH S+I+ D VL I G
Sbjct: 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 94.8 bits (236), Expect = 4e-20
Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 22/226 (9%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ +++ Y K+ L V+ T+ PG L+G +GAGKT++ ++ P SG++
Sbjct: 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQ----HPIMIAASVYDNIAI--GCPHATRKEIQNAAM 401
I+G D+ +++RR I ++PQ +P D IA G P K + +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA-RVDEV 114
Query: 402 LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
L + L + +G LS G +R+ IA+A++ D IL++DE + LD E
Sbjct: 115 LELVN-----LGDRAKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 462 EQKIWKVLREQRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
+ +L E R I ++H + ++ + V VL+ +V +G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 94.6 bits (235), Expect = 5e-20
Identities = 104/509 (20%), Positives = 214/509 (42%), Gaps = 51/509 (10%)
Query: 15 LWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSIL 74
+ +LLL V+S + T LG+ I ++ + I KI+ G + + L
Sbjct: 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGL 111
Query: 75 VKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSL-----IVVSIVTLFLMVMI 129
D I + + +++++++ G+ + +S K+ L IVV+I F+++
Sbjct: 112 TSDVRNI-SFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMAR 170
Query: 130 KFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKG-FLRSA 188
+ E KL N + Q+ G++ + L +++ + ++ A
Sbjct: 171 VYKHMAAAR--ETEDKLQNDY----------QTILEGRKELTLNRERAEYVHNNLYIPDA 218
Query: 189 -LIRTCIACFVIFFVSCGIFI----VFLIG-AHYVA-TAEMPRGKLAEFVVYAFIFFAS- 240
R I F + + + LIG ++A + +A +V +F +
Sbjct: 219 QEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTP 278
Query: 241 IRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGK 300
+ S +G + + A + ++ +L +L R P ++ R+V F Y
Sbjct: 279 LLSAVGILPTLLTAQVAFNKIAKL---ELAPYKADFPRPQAFPDWKTLELRNVRFAYQDN 335
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
+ + +N T++ GE + L+G +G+GK+++ L+ Y P SG + ++G + LE
Sbjct: 336 AFH--VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLE 393
Query: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
+ R+ + + ++D + + A +++ LE + T L
Sbjct: 394 DYRKLFS-----AVFSDYHLFDQLLGP---------EGKASPQLIEKWLQRLELAHKTSL 439
Query: 421 GDGAV---HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL--REQRRG 475
DG LSTGQ +R+A+ A+L++ IL+LDE + D ++ ++VL + +G
Sbjct: 440 NDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG 499
Query: 476 RTTIFASHRLSAIQDADMVFVLHDQVIVE 504
+T SH AD + + + + E
Sbjct: 500 KTIFAISHDDHYFIHADRLLEMRNGQLSE 528
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 93.1 bits (231), Expect = 2e-19
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 9/219 (4%)
Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369
+ TV GE +A++G SGAGK+++ +LI F P SG + I G+D E R
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE-RPVSMLF 77
Query: 370 PQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLST 429
++ + +V NI +G + + + A +G G+ L LS
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL--AGFLKRLPG---ELSG 132
Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLS- 486
GQ QR+A+AR ++++ PILLLDE SALD ++ ++ + R T + +H
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192
Query: 487 AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILG 525
A + AD V L + I +G +ELL A +G
Sbjct: 193 AARIADRVVFLDNGRIAAQGSTQELLSGKASAAALLGIG 231
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 92.8 bits (230), Expect = 2e-19
Identities = 58/208 (27%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
+LKN+N ++ GE +A+ G +G+GKTS+ LIL +P G ++ G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424
I++ Q ++ ++ +NI G + + ++ Q E I +T+LG+G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYR-YKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQRRGRTTIFASH 483
+ LS GQ RI++ARA+ KD+ + LLD LD+ E++I+ + + +T I +
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217
Query: 484 RLSAIQDADMVFVLHDQVIVEKGVHEEL 511
++ ++ AD + +LH+ G EL
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 91.1 bits (226), Expect = 6e-19
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
++ V+F V+ GE L+G +GAGKT+ ++ P SG + G D+ E+RR
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRR 74
Query: 366 IAWVPQHPIMIAA-SVYDNIAI-----GCPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419
I V Q + + ++N+ I G P A R+E + + +F+G LE D +
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFVGLLEAA-DRL 128
Query: 420 LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTT 478
+ S G +R+ IAR+++ +L LDE LD + +W+ + + + T
Sbjct: 129 VK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 479 IF-ASHRL-SAIQDADMVFVLHDQVIVEKGVHEEL 511
I +H + A Q D V ++ I+ +G EEL
Sbjct: 185 ILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 90.7 bits (225), Expect = 9e-19
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 28/219 (12%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ ++VS GK IL ++++ V PGE A+VG +GAGKT++ SL+ + P SG V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 348 EIEGIDLRLLSL-EEIRRFIAWV---------PQHPI--MIAASVYDNIAIGCPHATRKE 395
+ G E+R+ I V + + ++ + + +I I T ++
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 396 IQNAAMLAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMG 454
+ A L LE L D LS G+ +R+ IARA++KD +L+LDE
Sbjct: 149 LAAAQWL---------LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 455 SALDIENEQKIWKVLREQR---RGRTTIFASHRLSAIQD 490
LD+ +++ L E +F +H I
Sbjct: 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 90.3 bits (224), Expect = 1e-18
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGI 352
+S Y GK RS L++V+ T+ GE + ++G SG GKT++ +LI F P GS+++ G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 353 DLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412
R + R + + ++ +V DN+A G ++ Q + Q +G
Sbjct: 67 --RRIEGPGAERGVVF-QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE 123
Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471
+ I LS G QR+ IARA+ + +LLLDE ALD +++ ++L +
Sbjct: 124 GAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178
Query: 472 -QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGV 507
Q G+ + +H D + L +++V
Sbjct: 179 WQETGKQVLLITH------DIEEALFLATRLVVLSPG 209
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 90.0 bits (223), Expect = 2e-18
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
R +L V+ ++PGE +A++G +GAGK+++ + P SG V + G+ L EE+
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL 73
Query: 363 RRFIAWVPQH-PIMIAASVYDNIAIG-CPHAT-RKEIQNAAMLAQAHEFIGCL---ENGY 416
R A +PQ+ + +V + + +G PH + R+ ++ + AQA Y
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133
Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSP------ILLLDEMGSALDIENEQKIWKVLR 470
T LS G+ QR+ +AR + + P L LDE SALDI ++ ++ R
Sbjct: 134 RT--------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 471 E-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
+ R G + H L+ A Q AD + +LH ++ G +++L
Sbjct: 186 QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 89.4 bits (222), Expect = 2e-18
Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 15/227 (6%)
Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL-E 360
KR ++ V+ +V+ GE + L+G +GAGKT+ F +I+ P SG + ++G D+ L + +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 361 EIRRFIAWVPQHP-IMIAASVYDNI-AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDT 418
R I ++PQ I +V +NI A+ K+ + + EF
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEF------HITH 125
Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD---IENEQKIWKVLREQRRG 475
+ A LS G+ +R+ IARA+ + LLLDE + +D +++ QKI K+L++ RG
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RG 183
Query: 476 RTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHY 521
+ H + + D +++++ ++ +G EE+ Y
Sbjct: 184 IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVY 230
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 89.2 bits (221), Expect = 3e-18
Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 26/267 (9%)
Query: 230 FVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVS 289
+ + + A R+ L + QA+ + + E + F ++
Sbjct: 341 WFIDNYDAIADWRATLLRLAEFRQALEAAQMDTE------KPARTGRRIDFDDNADHGIT 394
Query: 290 FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349
++S P +++L +NF V+PGE + + G+SGAGKTS+ + + SG + +
Sbjct: 395 LENLSLRTP--DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452
Query: 350 EGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAH--E 407
D LL ++PQ P + ++ + + + + A+L + +
Sbjct: 453 PA-DSALL----------FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
L+ LS G+ QR+A AR +L + LDE SALD E E ++++
Sbjct: 502 LAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ 556
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMV 494
+L+E+ T I HR +
Sbjct: 557 LLKEELPDATVISVGHRPTLWNFHSRQ 583
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 89.1 bits (221), Expect = 3e-18
Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 13/227 (5%)
Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL-E 360
KR ++ +V+ V GE + L+G +GAGKT+ F +I+ P SG + ++ D+ L + +
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75
Query: 361 EIRRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN-GYDT 418
R I ++PQ I +V DNI ++ + E LE
Sbjct: 76 RARLGIGYLPQEASIFRKLTVEDNIMA----VLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD---IENEQKIWKVLREQRRG 475
+ A LS G+ +R+ IARA+ + +LLDE + +D + + Q+I K L++ RG
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RG 189
Query: 476 RTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHY 521
+ H + + D +++ D ++ +G EE++ Y
Sbjct: 190 IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY 236
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 88.0 bits (218), Expect = 6e-18
Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 26/252 (10%)
Query: 271 ISSPISSRTFPSPVLGSVSFRS-VSFVYPGKSKRS---ILKNVNFTVQPGETIALVGDSG 326
I S+ F S S + + + G K + LK+++F + GE + ++G +G
Sbjct: 4 IKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNG 63
Query: 327 AGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAI 386
AGK+++ LI Y P SG V++ G ++ L E+ + P+ + +NI +
Sbjct: 64 AGKSTLLKLIAGIYKPTSGKVKVTG---KVAPLIELG--AGFDPE------LTGRENIYL 112
Query: 387 GC--PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKD 444
TRKEI + + EF L + D + S+G R+A + A +
Sbjct: 113 RGLILGLTRKEID--EKVDEIIEFAE-LGDFIDQPVK----TYSSGMYARLAFSVATHVE 165
Query: 445 SPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQDA-DMVFVLHDQVI 502
ILLLDE+ + D ++K + L E + +T + SH L AI+ D L I
Sbjct: 166 PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI 225
Query: 503 VEKGVHEELLKK 514
+G EE++
Sbjct: 226 RMEGSPEEVIPA 237
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 85.3 bits (211), Expect = 4e-17
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 28/229 (12%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS------ 358
+LK V+ G+ I+++G SG+GK++ I P +GS+ + G ++RL
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 359 -------LEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCP----HATRKEIQNAAMLAQAH 406
L+ +R + V QH + + +V +N+ I P ++ E A A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV-IEAPVHVLGVSKAEAIERAEKYLAK 139
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
I + Y HLS GQ QR+AIARA+ + ++L DE SALD E ++
Sbjct: 140 VGIAEKADAY-------PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 467 KVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513
KV+++ GRT + +H + A + V LH I E+G E++
Sbjct: 193 KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 85.0 bits (210), Expect = 4e-17
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 312 TVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQ 371
T GE A+VG SG+GK+++ +LI F P SG V I G+D+ + R ++ + Q
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT--AAPPADRPVSMLFQ 77
Query: 372 HPIMIA-ASVYDNIAIG-CPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLST 429
+ A +V N+ +G P A+ G + LS
Sbjct: 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV------GLAGLEKRLPGELSG 131
Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLS- 486
G+ QR+A+AR +++D P+LLLDE +ALD ++ ++ + T + +H+
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191
Query: 487 AIQDADMVFVLHDQVIVEKG 506
A + A V L + I +G
Sbjct: 192 AKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 84.8 bits (209), Expect = 6e-17
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV----EIEGIDLRLLSL 359
+ L N+N + G+ +VG G GK+S+ IL G V + E +
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 360 EEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATR--KEIQNAAMLAQAHEFIGCLENGYD 417
R +A+ Q P ++ A+V +NI G P + K + +A L I L G
Sbjct: 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPD---IDLLPFGDQ 131
Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE-----NEQKIWKVLREQ 472
T +G+ ++LS GQ QRI +ARA+ +++ I+ LD+ SALDI ++ I K L++
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 473 RRGRTTIFASHRLSAIQDADMVFVLHD 499
+ RT + +H+L + AD + + D
Sbjct: 192 K--RTLVLVTHKLQYLPHADWIIAMKD 216
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 84.4 bits (209), Expect = 7e-17
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 49/224 (21%)
Query: 287 SVSFRSVSF---VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI--LRFYD 341
++SFR+++ P KS + +LKNV+ +PGE A++G SGAGK+++ + + R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 342 PCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKE-IQNAA 400
SG V I G L R+ I +VPQ I+ P T +E + AA
Sbjct: 63 GVSGEVLINGRP---LDKRSFRKIIGYVPQDDILH------------PTLTVRETLMFAA 107
Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
L LS G+ +R++IA ++ + +L LDE S LD
Sbjct: 108 KLRG----------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
Query: 461 NEQKIWKVLRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503
+ ++ +LR GRT I + H+ S+ +F L D++++
Sbjct: 146 SALQVMSLLRRLADTGRTIICSIHQPSSE-----IFELFDKLLL 184
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 84.3 bits (208), Expect = 8e-17
Identities = 65/239 (27%), Positives = 122/239 (51%), Gaps = 20/239 (8%)
Query: 276 SSRTFPSPVLGSVSFRSVSFVYPGKSK--RSILKNVNFTVQPGETIALVGDSGAGKTSIF 333
S P +SFR+++ KSK ++ILK V+ T +PGE +A++G SG+GKT++
Sbjct: 14 SFSELPYLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLL 73
Query: 334 SLILRFYDPC---SGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNI---AI 386
+ + + SG + + G R R+ +V Q +++ +V + + A+
Sbjct: 74 NALAGRLNGGLKLSGEILLNG---RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSAL 130
Query: 387 GCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDS 445
++ + + + + +G LE DT++G+ + LS G+ +R++IA +L D
Sbjct: 131 LRLPSSLSKEEKRERVEEVISELG-LEKCADTLIGNPGIRGLSGGERKRVSIALELLTDP 189
Query: 446 PILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503
IL LDE S LD + ++ ++L+ R GRT I H+ S+ +F L D++++
Sbjct: 190 SILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSS-----ELFELFDKLLL 243
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 83.2 bits (206), Expect = 1e-16
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 44/206 (21%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
S + +++V+F V+ GE + + G G G+T + + P SG + ++G + S
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 361 E-IRRFIAWVP----QHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415
+ IR IA+VP + +++ SV +NIA+
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALS---------------------------- 102
Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-R 474
LS G Q++ +AR + +D +L+LDE +D+ + +I++++RE
Sbjct: 103 ---------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA 153
Query: 475 GRTTIFASHRLS-AIQDADMVFVLHD 499
G+ + S L + D + V+++
Sbjct: 154 GKAVLLISSELDELLGLCDRILVMYE 179
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 83.1 bits (206), Expect = 2e-16
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 330 TSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI-RRFIAWVPQHP-IMIAASVYDNIAIG 387
+++ LI P SG++ ++G D LS + R+ I V Q P + +V +N+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 388 -CPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP 446
+ A +F+ LS GQ QR+AIARA+LK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLD----------RSPVGTLSGGQKQRVAIARALLKKPK 110
Query: 447 ILLLDE 452
+LLLDE
Sbjct: 111 LLLLDE 116
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 82.5 bits (204), Expect = 3e-16
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 13/227 (5%)
Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF--YDPCSGSVEIEGIDLRLLSL 359
K+ ILK VN TV+ GE A++G +G+GK+++ I+ Y+ G + +G D+ LS
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75
Query: 360 EEIRR---FIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415
+E R F+A+ Q+P+ I + D + + + E L
Sbjct: 76 DERARAGIFLAF--QYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD 133
Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-R 474
+ + S G+ +R I + +L + + +LDE S LDI+ + + + + R
Sbjct: 134 EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193
Query: 475 GRTTIFASH--RLSAIQDADMVFVLHDQVIVEKGVHE--ELLKKSGF 517
GR + +H RL D V VL+D IV+ G E E L++ G+
Sbjct: 194 GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEKGY 240
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 82.4 bits (203), Expect = 3e-16
Identities = 88/417 (21%), Positives = 176/417 (42%), Gaps = 44/417 (10%)
Query: 91 IVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIF 150
+++ L+ GF A +I + L L + S + L ++ FS++ T ++ + N+
Sbjct: 360 LLIFVLIFGFFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVIL---SIYNLI 416
Query: 151 SDMIKSVMV--LQSFNAGKEAIR----LYDIQSQKTYKGFLRSALIRTC----------- 193
S ++ V LQSF G+ L + L S
Sbjct: 417 SGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEV 476
Query: 194 IACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQ 253
+ F+ +++ LIG Y+A L V +FF I + F +
Sbjct: 477 LGNDESFYTLLLEWLLPLIGRRYLA--------LVTEGVKDDLFFLLI--FVPFKRRMRA 526
Query: 254 AIASLRRLRELIVC-KLDISSP---ISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNV 309
++ + E + KLD++ + + F S ++ ++S VY GK ++ +
Sbjct: 527 LTQNMLKGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKDG--AVRGL 584
Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL-LSLEEIRRFIAW 368
+F V PGE L+G +GAGKT+ F ++ P SG I+G D+ + +++R+ + +
Sbjct: 585 SFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGY 644
Query: 369 VPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHL 427
PQ + + +++ +A + + + + + + + + G
Sbjct: 645 CPQFDALWEELTGREHLEF---YARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRT--Y 699
Query: 428 STGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRTTIFASH 483
S G +R++ A A++ D ++LLDE + LD + + +W ++ R+ G+ I SH
Sbjct: 700 SGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH 756
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 82.5 bits (204), Expect = 3e-16
Identities = 52/209 (24%), Positives = 102/209 (48%), Gaps = 16/209 (7%)
Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
K+ +L +++ V+ GE +G +GAGKT+ +IL P SG + +G E
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS--YQKNIE 69
Query: 362 IRRFIAWVPQHPIMIAA-SVYDNIAI-GCPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419
R I + + P + +N+ + RK+ + + + +G ++ +
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID-----EVLDVVGLKDSAKKKV 124
Query: 420 LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR-EQRRGRTT 478
G S G QR+ IA A+L + +L+LDE + LD + +++ +++ + +G T
Sbjct: 125 KG-----FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITV 179
Query: 479 IFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
+ +SH LS IQ AD + +++ ++E+G
Sbjct: 180 LISSHLLSEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 81.9 bits (202), Expect = 4e-16
Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
Query: 296 VYPGKS-KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL 354
+ G ++ L ++ + G+ + ++G +GAGK+++ + I P SG + I+G+D+
Sbjct: 11 FFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV 70
Query: 355 RLLSLEEIRRFIAWVPQHPIMIAA---SVYDNIAIGCPHATRKEIQ---NAAMLAQAHEF 408
S+ + +A V Q P+ A ++ +N+A+ ++ + N + E
Sbjct: 71 TKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468
+ L G + L D LS GQ Q +++ A L ILLLDE +ALD + + + ++
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 469 LRE--QRRGRTTIFASHRL-SAIQDADMVFVLHDQVIV 503
+ + TT+ +H + A+ + + +LH IV
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
>gnl|CDD|144311 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 275
Score = 81.6 bits (202), Expect = 4e-16
Identities = 46/236 (19%), Positives = 102/236 (43%), Gaps = 6/236 (2%)
Query: 11 VSLYLWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEI 70
+SL + + V +L + +Y LG+R+ + R ++ +I+ L SFF++ GE+
Sbjct: 41 ISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGEL 100
Query: 71 FSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIK 130
S L D +I+ +G + + +SL G + +MF KL+L++++I+ L +++
Sbjct: 101 TSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGLIVMFYYGWKLTLVLLAILPLLILLSAV 160
Query: 131 FSRKKTNTLYADEK----KLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLR 186
+ K L E+ K ++ + + + +++F + + YD + K ++
Sbjct: 161 LA-KILRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIK 219
Query: 187 SALIRTCIACFVIFFVSCGIFIVFLIGAH-YVATAEMPRGKLAEFVVYAFIFFASI 241
A+I F + G + V + + G + F+ +
Sbjct: 220 KAIIAGLSFGITQFISYLSYALALWFGGYLSVISGGLSVGTVFAFLSLGLQLSGPL 275
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 81.5 bits (201), Expect = 5e-16
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 18/216 (8%)
Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358
G+ + SILK V V+ GET+A+VG SG+GK+++ +++ DP SG V + G L L
Sbjct: 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLD 78
Query: 359 LEEIRRF----IAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQN---AAMLAQAHEFIG 410
+ + +V Q +I + +N+A+ E++ A A A +
Sbjct: 79 EDARAALRARHVGFVFQSFHLIPNLTALENVALPL------ELRGESSADSRAGAKALLE 132
Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
+ G L LS G+ QR+A+ARA +L DE LD KI +L
Sbjct: 133 AV--GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF 190
Query: 471 EQRRGR--TTIFASHRLSAIQDADMVFVLHDQVIVE 504
R R T + +H D L +VE
Sbjct: 191 ALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 81.4 bits (201), Expect = 6e-16
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 26/212 (12%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
L +++F+V+ GE L+G +GAGKT+ +IL P SG V +G L R
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD----IAARN 70
Query: 365 FIAWVPQ----HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
I ++P+ +P M V D + A K ++ + E++ LE L
Sbjct: 71 RIGYLPEERGLYPKM---KVIDQLVY---LAQLKGLKKEEARRRIDEWLERLE------L 118
Query: 421 GDGAV----HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-G 475
+ A LS G Q++ A++ D +L+LDE S LD N + + V+RE R G
Sbjct: 119 SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 476 RTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
+T I ++H++ +++ D V +L+ V G
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 81.0 bits (200), Expect = 7e-16
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 22/210 (10%)
Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG---IDLRL-LSLEEIR 363
++F + E + G SGAGK+++ I P G++ + G D R ++L +
Sbjct: 16 KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 364 RFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419
R I V Q P + +V +N+A G +E + E + L G D +
Sbjct: 75 RKIGLVFQQYALFPHL---NVRENLAFGLKRKRNREDRI-----SVDELLDLL--GLDHL 124
Query: 420 LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRT 477
L LS G+ QR+A+ARA+ +LLLDE SALD ++ L++ +
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 478 TIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
IF +H LS + AD + V+ D + G
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 80.3 bits (198), Expect = 1e-15
Identities = 69/278 (24%), Positives = 131/278 (47%), Gaps = 36/278 (12%)
Query: 252 SQAIASLRRLRELIVCKLDISSPISSRTF------PSPVLGS--VSFRSVSFVYPGKSKR 303
+A + ++RL +L + + P LG + F +VS Y G R
Sbjct: 278 KKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--R 335
Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIR 363
+LK+++F + G+ IA+VG +GAGK+++ L+ P SG+V++ G ++
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-GETVK-------- 386
Query: 364 RFIAWVPQH--PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421
I + QH + +V + ++ G P +E++ A L + F G +
Sbjct: 387 --IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR--AYLGRFG-FTG------EDQEK 435
Query: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFA 481
V LS G+ R+ +A+ +L+ +LLLDE + LDIE+ + + + L + G T +
Sbjct: 436 PVGV-LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLV 492
Query: 482 SHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSGFY 518
SH + A ++++ D+V +G +E+ L++
Sbjct: 493 SHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
Score = 79.9 bits (197), Expect = 2e-15
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 41/221 (18%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
++ ++S Y R +L+NV+ T+ PGE I LVG +GAGK+++ ++ +P SG V
Sbjct: 4 ITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHA----TRKEIQNAAML 402
LR + ++ Q P + +V D + G E A +
Sbjct: 61 TRPK-GLR----------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 403 AQAHEFIGCLENGYDTILGDGAVH--------------------LSTGQIQRIAIARAIL 442
E + LE + + G LS G +R+A+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 443 KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASH 483
++ +LLLDE + LD+E+ + + L+ T I SH
Sbjct: 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--GTVIVVSH 208
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 80.1 bits (197), Expect = 1e-15
Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 25/249 (10%)
Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
S+ ++ Y G + L ++ GET+ L+G SGAGK+S+ ++ P SG+
Sbjct: 2 SIQLNGINCFY-GAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 347 VEIEGIDLRLL------SLEEIRRFIAWV-PQHPIMIAASVYDNIAIGCPHATRKEIQNA 399
+ I G ++ ++RR + V Q+ + +V +N+ I P ++
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL-IEAPCRVLGLSKDQ 117
Query: 400 AMLAQAHEFIGCLENGYDTILGDGA----VHLSTGQIQRIAIARAILKDSPILLLDEMGS 455
A+ A+A + + L L A +HLS GQ QR+AIARA++ + +LL DE +
Sbjct: 118 AL-ARAEKLLKRLR------LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 456 ALDIENEQKIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513
ALD E +I +++E G T + +H + A + A V + + IVE+G +
Sbjct: 171 ALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230
Query: 514 -KSGFYAHY 521
++ + +Y
Sbjct: 231 PQTEAFKNY 239
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 79.6 bits (196), Expect = 2e-15
Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 36/229 (15%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP--- 342
G + ++VS PG +L NVNFT+ GE + L+G SG GK+++ S ++
Sbjct: 1 GMLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS 57
Query: 343 CSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHA----TRKEIQ 397
C+G + + L +L +R I + Q ++ SV N+ P R+
Sbjct: 58 CTGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAA 115
Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
NAA+ +G D LS GQ R+A+ RA+L LLLDE S L
Sbjct: 116 NAAL----------ERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRL 165
Query: 458 DIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
D LR+Q R +F+ R + I V V HD V G
Sbjct: 166 D--------VALRDQF--RQWVFSEVRAAGIP---TVQVTHDLQDVPAG 201
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 79.2 bits (195), Expect = 3e-15
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
+ + N++F V PGE L+G +GAGKT+ F +IL +P G + G L +E
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QE 69
Query: 362 IRRFIAWVPQ----HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417
I+ I ++P+ +P M +V D + + + L E + +
Sbjct: 70 IKNRIGYLPEERGLYPKM---TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK 126
Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGR 476
I LS G Q+I A++ + +L+LDE S LD N + + + E + G
Sbjct: 127 KI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181
Query: 477 TTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSG 516
T IF+SHR+ +++ D + +L V G E++ + G
Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 77.8 bits (192), Expect = 6e-15
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 47/227 (20%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF--YDPCSGSVEIEGIDLRLLS 358
+ ILK VN T++ GE AL+G +G+GK+++ I+ Y+ G + +G D+ L
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP 70
Query: 359 LEEIRR---FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415
EE R F+A+ Q+P I ++NA L
Sbjct: 71 PEERARLGIFLAF--QYPPEIPG-----------------VKNADFLRY----------- 100
Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR- 474
+ +G S G+ +R I + +L + + +LDE S LDI+ + + +V+ + R
Sbjct: 101 ----VNEG---FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 475 GRTTIFASH--RLSAIQDADMVFVLHDQVIVEKGVHE--ELLKKSGF 517
G++ + +H RL D V VL+D IV+ G E ++K G+
Sbjct: 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 76.7 bits (189), Expect = 1e-14
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 50/212 (23%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ ++S P R +LK+++F ++PG+ + + G SG GK+S+F + + SG +
Sbjct: 1 IELENLSLATP--DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
+ + ++PQ P + ++ + + P
Sbjct: 59 GMPE-----------GEDLLFLPQRPYLPLGTLREQLIY--P------------------ 87
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
+D +L S G+ QR+A AR +L + LDE SALD E+E ++++
Sbjct: 88 --------WDDVL-------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVLHD 499
+L+E G T I HR S + D V L
Sbjct: 133 LLKE--LGITVISVGHRPSLWKFHDRVLDLDG 162
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 76.8 bits (189), Expect = 2e-14
Identities = 57/221 (25%), Positives = 119/221 (53%), Gaps = 11/221 (4%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
+ +L +V+ + G +++G +GAGK+++ S++ R SG + I+G++L +
Sbjct: 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 361 EIRRFIAWVPQ-HPIMIAASVYDNIAIG-CPHAT-RKEIQNAAMLAQAHEFIGCLENGYD 417
E+ + ++ + Q + I +V D + G P++ R ++ ++ +A E++ LE+ D
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH-LEDLSD 130
Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRG 475
L + LS GQ QR IA + +D+ +LLDE + LD+++ +I K+LR G
Sbjct: 131 RYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG 186
Query: 476 RTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKKS 515
+T + H ++ A +D + L + +V++G +E+++
Sbjct: 187 KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 74.7 bits (183), Expect = 6e-14
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 25/215 (11%)
Query: 313 VQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQH 372
V+ GE + LVG +GAGK+++ + + SGS++ G L S E+ R A++ Q
Sbjct: 22 VRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQ 80
Query: 373 -PIMIAASVYDNIAIGCPHATRKEIQN--AAMLAQAHEFIGCLENGYDTILGDGAVHLST 429
A V+ + + P TR E+ N A L D LG LS
Sbjct: 81 QTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL------------ALDDKLGRSTNQLSG 128
Query: 430 GQIQRIAIARAILKDSP-------ILLLDEMGSALDIENEQKIWKVLREQ-RRGRTTIFA 481
G+ QR+ +A +L+ +P +LLLDE ++LD+ + + ++L ++G + +
Sbjct: 129 GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188
Query: 482 SHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKKS 515
SH L+ ++ A ++L ++ G EE+L
Sbjct: 189 SHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 74.2 bits (182), Expect = 8e-14
Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 15/185 (8%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
R++ +++FT+ GE + + G +GAGKT++ ++ P +G V +G ++ + E
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESY 73
Query: 363 RRFIAWVPQHP-IMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
+ + ++ P I + +N+ H + NAA + +A +G L
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAG------L 123
Query: 421 GDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRGRTT 478
D V LS GQ +R+A+AR L +P+ +LDE +ALD E + ++ +G
Sbjct: 124 EDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183
Query: 479 IFASH 483
+ +H
Sbjct: 184 LLTTH 188
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 72.2 bits (177), Expect = 4e-13
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 21/233 (9%)
Query: 294 SFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGID 353
F + + +++++F + GE + +G +GAGK++ ++ P SG V + G D
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 354 LRLLSLEEIRRFIAWVPQ-------HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
E +R + Q P + + V I EI + +
Sbjct: 88 PFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI---------YEIPDDEFAERLD 138
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
L + L LS GQ R +A A+L +L LDE LD+ + I
Sbjct: 139 FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196
Query: 467 KVLRE--QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEELLKKSG 516
+ L+E + R T + +H I D V ++ +V G +L ++ G
Sbjct: 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 71.8 bits (176), Expect = 4e-13
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 17/218 (7%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG-IDLRLLSLEEI-R 363
L +++F+V PGE L+G +GAGKT++ +I P G V +G DL L I R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 364 RFIAWVPQHP-IMIAASVYDNIAIGCPH--------ATRKEIQNAAMLAQAHEFIGCLEN 414
I Q P + +V +N+ + R + + + IG +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140
Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
A LS GQ Q + I + +D +LLLDE + + +K ++L+
Sbjct: 141 RDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG 195
Query: 475 GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
+ + H + +++ AD V VLH+ ++ +G +E+
Sbjct: 196 KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 71.5 bits (175), Expect = 5e-13
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 16/184 (8%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
R++ ++FT+ GE + + G +G+GKT++ ++ P +G V + G L + I
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSI 71
Query: 363 RRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421
R + ++ P + SV +N+ + ++++ A LA+ NG+
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEA--LARVGL------NGF----E 119
Query: 422 DGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRGRTTI 479
D V LS GQ +R+A+AR +L P+ +LDE +ALD + + + RG +
Sbjct: 120 DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVV 179
Query: 480 FASH 483
+H
Sbjct: 180 LTTH 183
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 71.0 bits (174), Expect = 7e-13
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 11/213 (5%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI---LRFYDPCSGSVEIEGIDLRLL 357
IL +V+ V+ G+ +A++G SG+GKT++ I + SG + G +
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QPR 74
Query: 358 SLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416
++ ++ +A+V Q I++ +V + + + A+ + E + +
Sbjct: 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTY-TAILRLPRKSSDAIRKKRVEDVLLRDLAL 133
Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRG 475
I G+ +S G+ +R++IA +L D +L+LDE S LD + L + RR
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 476 RTTIFASH--RLSAIQDADMVFVLHDQVIVEKG 506
R I H R + D + +L IV G
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 70.0 bits (171), Expect = 1e-12
Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 37/218 (16%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF--------YDPCSGSVEIEGIDL 354
R +L+N+N ++PG+ +A+VG SGAGKT++ +IL Y P SG VE+ +
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
Query: 355 RLLSLEEIRRFIAWVPQHPIMIAASVYDNIA--IGCPHATRKEIQNAAMLAQAHEFIGCL 412
L E P ++ +++ G +A EI N A L+ A +
Sbjct: 456 SALIPGEY---------EPEFGEVTILEHLRSKTGDLNAA-VEILNRAGLSDAVLYRRKF 505
Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
LSTGQ +R +A+ + + +LL+DE + LD ++ + + E
Sbjct: 506 SE------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553
Query: 473 RR--GRTTIFASHR---LSAIQDADMVFVLHDQVIVEK 505
R G T I +HR +A++ ++ V + +V V +
Sbjct: 554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVNE 591
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 69.7 bits (170), Expect = 2e-12
Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 43/254 (16%)
Query: 258 LRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGE 317
L+R +E V P ++ P PVLG V+F YPG+ + + K ++F +
Sbjct: 564 LQRPKEYSV---KFQFPEPTKLNP-PVLG---LHDVTFGYPGQ--KPLFKKLDFGIDMDS 614
Query: 318 TIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHP---- 373
IA+VG +G GK+++ L++ DP G +LR + R I W QH
Sbjct: 615 RIAIVGPNGVGKSTLLKLLIGKLDPNDG-------ELR----KNHRLRIGWFDQHANEAL 663
Query: 374 -IMIAASVYDNIAIGCPHA-TRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQ 431
Y P+ RK++ + + AH LS GQ
Sbjct: 664 NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIK--------------DLSGGQ 709
Query: 432 IQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDA 491
R+A+A L +L+LDE + LDIE+ + + + E G I SH I +
Sbjct: 710 KARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGG--VIMVSHDERLIVET 767
Query: 492 D-MVFVLHDQVIVE 504
D ++V+ +Q I E
Sbjct: 768 DCNLWVVENQGIDE 781
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 69.1 bits (169), Expect = 2e-12
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 21/218 (9%)
Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL----RLLSLEEIRR 364
NFT+ AL G SG+GKTS+ ++I P G +E+ G L + + L +R
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 365 FIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNA-AMLAQAHEFIGCLENGYDTILGD 422
I +V Q + +V N+ G + R + A+L H +L
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEH------------LLDR 124
Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTT--IF 480
LS G+ QR+AI RA+L +LL+DE ++LD+ +++I L R ++
Sbjct: 125 YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184
Query: 481 ASHRLSAI-QDADMVFVLHDQVIVEKGVHEELLKKSGF 517
SH L + + AD V VL + + G EE+ F
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDF 222
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 69.2 bits (169), Expect = 2e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI----EGIDLRLLSL 359
+L+NV+ +V GE + L G SG+GK+++ + Y P G + + E +DL
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 360 EEI----RRFIAWVPQH----PIMIAASVYDN--IAIGCPHATRKEIQNAAMLAQAHEFI 409
E+ R I +V Q P + A V +A G P + A +L +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP-REVARAKAADLLTRL---- 139
Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
N + + S G+ QR+ IAR + D PILLLDE ++LD N + +++
Sbjct: 140 ----NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 470 REQR 473
RE +
Sbjct: 196 REAK 199
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 68.8 bits (168), Expect = 3e-12
Identities = 59/239 (24%), Positives = 86/239 (35%), Gaps = 53/239 (22%)
Query: 278 RTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL 337
P PV+ ++VSF Y I K +NF + +ALVG +GAGK+++ LI
Sbjct: 383 GKIPPPVI---MVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLIT 437
Query: 338 RFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQH---PIMIAASVYDNIAIGCPHATRK 394
P G V +L QH + + S + + P
Sbjct: 438 GDLQPTIGMV-SRHSHNKLPRYN----------QHLAEQLDLDKSSLEFMMPKFPDEKEL 486
Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAV----HLSTGQIQRIAIARAILKDSPILLL 450
E + + G + GD V LS GQ +R+ AR +K +LLL
Sbjct: 487 EEMRSIL-------------GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLL 533
Query: 451 DEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHE 509
DE + LDIE TI A +V V HD ++ + E
Sbjct: 534 DEPTNHLDIE-----------------TIDALAEAINEFPGGVVLVSHDFRLISQVAEE 575
Score = 57.7 bits (139), Expect = 7e-09
Identities = 49/261 (18%), Positives = 95/261 (36%), Gaps = 37/261 (14%)
Query: 250 GISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNV 309
++ + SL + + + F P+ V S+S + G ++K+V
Sbjct: 46 ALADELESLELIAKARSV--------TGNLFSHPISRDVKIESLSLSFHG---VELIKDV 94
Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLL-SLEEIRRFIAW 368
+ G L+G +G+GK++ I P ++ + + S ++ + +
Sbjct: 95 TLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM 154
Query: 369 VPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQ-------AHEFIGCL-ENGYDTIL 420
H + +++A C + E+ + L G+ + +
Sbjct: 155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214
Query: 421 GDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTI 479
D V LS G R A+ARA+ + +LLLDE + LD+E + + L + R
Sbjct: 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRII--- 271
Query: 480 FASHRLSAIQDADMVFVLHDQ 500
+V V H Q
Sbjct: 272 -------------LVIVSHSQ 279
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 68.8 bits (168), Expect = 4e-12
Identities = 69/320 (21%), Positives = 121/320 (37%), Gaps = 45/320 (14%)
Query: 206 IFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASL----RRL 261
I I F G Y ++ +L+ + F + S G + +S+ ++ L R+
Sbjct: 331 IAIPFFSGHVY---DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRI 387
Query: 262 RELIVCKLDISSPISSRTFPSPVLGS--------------------VSFRSVSFVYPGKS 301
EL+ D+SS T LG + F VS P +
Sbjct: 388 GELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTP-TN 446
Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
+++N++ V G+ + + G SG GKTS+ ++ + G + +
Sbjct: 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPT--------DG 498
Query: 362 IRRFIAWVPQHPIMIAASVYDNIAI-GCPHATRKEIQNAAMLAQAHEFIGC-----LENG 415
+ + ++PQ P M ++ D + + + + + E + E G
Sbjct: 499 GPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGG 558
Query: 416 YDT-ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
D + D LS G+ QR+A AR +LDE SA+ + E +++ RE
Sbjct: 559 LDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-- 616
Query: 475 GRTTIFASHRLSAIQDADMV 494
G T I HR S + D V
Sbjct: 617 GITFISVGHRKSLWKFHDYV 636
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 68.7 bits (168), Expect = 4e-12
Identities = 83/365 (22%), Positives = 138/365 (37%), Gaps = 56/365 (15%)
Query: 175 IQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYA 234
+Q Q YK + R+ I + F +FF + + + P K +V
Sbjct: 695 VQYQYEYKWYWRNFGI---LLGFTVFFNFVFLIALEYLK---------PLKKSGAILV-- 740
Query: 235 FIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVS 294
F G S I L K+ + S TF + +
Sbjct: 741 --FKKGKEKKKVKSAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFK----DVFYWVDLP 794
Query: 295 FVYPGK-SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE---IE 350
+ P + R +L NV+ +PG AL+G+SGAGKT++ ++ +G IE
Sbjct: 795 YEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVL-------AGRKTGGYIE 847
Query: 351 G---IDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGC----PHATRKEIQNAAML 402
G I E R +V Q I +V +++ P E + +
Sbjct: 848 GDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKY-EYV 906
Query: 403 AQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAIL-KDSPILLLDEMGSALDIEN 461
+ E + L+ D ++G LST Q +R+ I ++ S IL LDE S LD +
Sbjct: 907 EEVIELLE-LKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQA 965
Query: 462 EQKIWKVLRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAH 520
+ + LR+ G+T + H+ S +F D+++ LLK+ G +
Sbjct: 966 AAIVMRFLRKLADTGQTILCTIHQPSID-----IFEAFDELL--------LLKRGGQTVY 1012
Query: 521 YHILG 525
+ LG
Sbjct: 1013 FGPLG 1017
Score = 59.1 bits (143), Expect = 3e-09
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 24/219 (10%)
Query: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIF---SLILRFYDPCSGSVEIEGIDLRL 356
K K ILK+++ ++PGE ++G G+GKT++ + L + SG + G DL+
Sbjct: 125 KKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKE 184
Query: 357 LSLEEIRRFIAWVPQHPIMIAA-SVYDNI--AIGC-------PHATRKEIQNAAMLAQAH 406
++ +A+ + + +V + + A C +R+E + AAM
Sbjct: 185 FV---PKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRRE-KLAAMTDYLL 240
Query: 407 EFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
+ +G L++ DT++G+ V +S G+ +R++I ++ + IL DE+ LD +I
Sbjct: 241 KILG-LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQI 299
Query: 466 WKVLREQ-RRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503
K LR+ T S +Q + ++ L D VI+
Sbjct: 300 IKALRQLAHITGATALV----SILQPSPEIYDLFDDVIL 334
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 68.1 bits (166), Expect = 6e-12
Identities = 53/224 (23%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358
+ +K V+FT++ G+T+A++G++G+GK+++ ++ +P SG + I L
Sbjct: 22 RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81
Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIG----CPHATRKEIQNAAMLAQAHE---FIGC 411
+ I + Q P S+ + IG P +++ Q E +G
Sbjct: 82 YSFRSKRIRMIFQDP---NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL 138
Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
L + + L+ GQ QR+A+ARA++ I++ DE ++LD+ ++ ++ E
Sbjct: 139 LPDHANYYPH----MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194
Query: 472 --QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
+++G + I+ + + I+ +D V V+H+ +VE+G ++L
Sbjct: 195 LQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 67.4 bits (165), Expect = 9e-12
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 61/219 (27%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ R ++ + G L V+ +V+ GE AL+G++GAGK+++ ++ Y P SG +
Sbjct: 1 LELRGITKRFGGVK---ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 348 EIEGIDLRLLSLEEIRRF-IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
++G ++ S + RR IA V Q + R+ ++ A LA+
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLSV----------------GERQMVEIARALARNA 101
Query: 407 EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW 466
L+LDE +AL ++++
Sbjct: 102 RL---------------------------------------LILDEPTAALTPAEVERLF 122
Query: 467 KVLREQR-RGRTTIFASHRLSAIQD-ADMVFVLHDQVIV 503
KV+R R +G IF SHRL + + AD V VL D +V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 66.5 bits (162), Expect = 2e-11
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 28/226 (12%)
Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE---GIDLRLLSLEEI- 362
++V+F + PGE + +VG+SG+GKT++ I P +G+V G L ++ E
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 363 RRFIA---W--VPQHP---IMIAASVYDNI-----AIGCPHATRKEIQNAAMLAQAHEFI 409
RR + W V Q+P + + S NI AIG H + A+A +++
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGN-------IRAEAQDWL 135
Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
+E D I D S G QR+ IAR ++ ++ +DE LD+ + ++ +L
Sbjct: 136 EEVEIDLDRI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 470 REQRR--GRTTIFASHRLSAIQ-DADMVFVLHDQVIVEKGVHEELL 512
R R G + +H L+ + AD + V+ +VE G+ + +L
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL 240
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 62.5 bits (152), Expect = 2e-10
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 9/209 (4%)
Query: 294 SFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGID 353
S + LK ++FT++ GE + +G +GAGKT+ ++ P SG V + G+
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 354 LRLLSLEEIRRFIAWVPQHPIMI-AASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412
+ +RR Q + V D+ + A ++ A + E L
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARFKKRLDELSELL 141
Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471
+ +L LS GQ R IA A+L + IL LDE LD+ ++ I L+E
Sbjct: 142 DLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 472 -QRRGRTTIFASHRLSAIQD-ADMVFVLH 498
+ RG T + SH + I+ A V V+
Sbjct: 200 NRERGTTVLLTSHYMKDIEALARRVLVID 228
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 60.8 bits (147), Expect = 9e-10
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
+ ++ + P + ++ + F ++PG + + G +G GK+S+F ++ + +G
Sbjct: 481 GIILENIPVITP--AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL 538
Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHAT----RKEIQNA--- 399
+ I I ++PQ P M ++ D I P ++ RK +
Sbjct: 539 LSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIY--PDSSEQMKRKGYTDQDLE 585
Query: 400 AMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
A+L H E I E G+D + D LS G+ QR+ +AR LLDE SA+
Sbjct: 586 AILDIVHLEHILQREGGWD-AVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVS 644
Query: 459 IENEQKIWKVLREQRRGRTTIFASHRLS 486
I+ E KI++ + G + + +HR S
Sbjct: 645 IDVEGKIFQAA--KDAGISLLSITHRPS 670
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 57.1 bits (138), Expect = 1e-08
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 43/219 (19%)
Query: 286 GSVSFRSVSFVYPGK-SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP-- 342
++++++++ P K KR +L N++ V+PG AL+G+SGAGKT++ ++
Sbjct: 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV 61
Query: 343 CSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAML 402
+G + I G L + +R +V Q + P+ T +E
Sbjct: 62 ITGEILINGRPLD----KNFQRSTGYVEQQDVHS------------PNLTVRE------- 98
Query: 403 AQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462
A F L LS Q +R+ I + IL LDE S LD +
Sbjct: 99 --ALRFSALLRG------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144
Query: 463 QKIWKVLRE-QRRGRTTIFASHRLSA--IQDADMVFVLH 498
I + L++ G+ + H+ SA + D + +L
Sbjct: 145 YNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLK 183
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 57.1 bits (138), Expect = 1e-08
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 288 VSFRSVSF-VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI---LRFYDPC 343
+S+R++SF G+SK ILK+ + V+PGE + ++G G+G +++ +
Sbjct: 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV 63
Query: 344 SGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403
G + GI + + E+ I +V + + P T +E + A+
Sbjct: 64 EGDIHYNGIPYKEFA-EKYPGEIIYVSEEDVHF------------PTLTVRETLDFALRC 110
Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
+ +EF+ G +S G+ +R++IA A++ + +L D LD
Sbjct: 111 KGNEFV----RG-----------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155
Query: 464 KIWKVLREQRRG-RTTIFASHRLSAIQDADMVFVLHDQVIV 503
+I K +R +TT F S Q +D ++ L D+V+V
Sbjct: 156 EILKCIRTMADVLKTTTFV----SLYQASDEIYDLFDKVLV 192
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 54.5 bits (131), Expect = 8e-08
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 40/203 (19%)
Query: 312 TVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQ 371
++ E I ++G +G GKT+ ++ P G +EIE +++ PQ
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT------------VSYKPQ 68
Query: 372 H-----PIMIAASVYDNIAIGCPHAT-RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAV 425
+ + + H + EI + + IL
Sbjct: 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI--------------EQILDREVP 114
Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASH 483
LS G++QR+AIA + KD+ I LLDE + LD+E KV+R + +T H
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
Query: 484 RLSAIQDADMVFVLHDQVIVEKG 506
D M+ L D++IV +G
Sbjct: 175 ------DIIMIDYLADRLIVFEG 191
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 52.1 bits (125), Expect = 4e-07
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 43/247 (17%)
Query: 272 SSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPG-----ETIALVGDSG 326
I P R YP K + V+ G E I ++G +G
Sbjct: 323 PEEIEFEEKPPRDD---KARDTLVEYPDLKKT--YGDFKLEVEEGEIYDGEVIGILGPNG 377
Query: 327 AGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAI 386
GKT+ L+ P GS E DL+ +++ PQ+ I+ +
Sbjct: 378 IGKTTFVKLLAGVIKPDEGSEE----DLK----------VSYKPQY---ISPDYDGTVED 420
Query: 387 GCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP 446
A R ++ + + + LE+ + + + LS G++QR+AIA A+ +++
Sbjct: 421 LLRSAIRSAFGSSYFKTEIVKPLN-LEDLLERPVDE----LSGGELQRVAIAAALSREAD 475
Query: 447 ILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIV- 503
+ LLDE + LD+E + KV+R + +T + H D M+ + D++IV
Sbjct: 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH------DIYMIDYVSDRLIVF 529
Query: 504 --EKGVH 508
E G H
Sbjct: 530 EGEPGKH 536
Score = 51.7 bits (124), Expect = 5e-07
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QR 473
G + +L LS G++QR+AIA A+L+D+ + DE S LDI +V+RE
Sbjct: 202 GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE 261
Query: 474 RGRTTIFASHRLSAIQD--ADMVFVLH 498
G+ I H L A+ D +D V +L+
Sbjct: 262 DGKYVIVVEHDL-AVLDYLSDFVHILY 287
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 52.0 bits (125), Expect = 4e-07
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+ ++S Y G + +LK+++ T+ PG+ I LVG +GAGK+++ LI +P G V
Sbjct: 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 348 EI 349
Sbjct: 58 TW 59
Score = 45.8 bits (109), Expect = 3e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485
LS G+ R+A+A+ +L++ +LLLDE + LD+E+ + + + L+E T I SH
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDR 127
Query: 486 SAIQD-ADMVFVLHDQ 500
+ A + L D
Sbjct: 128 YFLDQVATKIIELEDG 143
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 47.6 bits (113), Expect = 8e-06
Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 41/246 (16%)
Query: 274 PISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIF 333
P P L V+F Y S+ K + + I+ VG++G GK+++
Sbjct: 352 PTEGEVLSPPNL---RISYVAFEYTP-SEYQWRKQLGLDRESDSRISRVGENGDGKSTLL 407
Query: 334 SLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPI---MIAASVYDNIAIGCPH 390
++ P G V R I + QH + + D + P
Sbjct: 408 KILKGDLTPTRGIVGRHP-----------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPG 456
Query: 391 ATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSP 446
T +EI+ G G+ A+ LS GQ R+A A +
Sbjct: 457 KTEEEIRRH-----------LGSFGLS---GELALQSIASLSGGQKSRVAFAACTWNNPH 502
Query: 447 ILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDA-DMVFVLHDQVI--V 503
+L+LDE + LD ++ + K L+ G + SH I ++V+ D + +
Sbjct: 503 LLVLDEPTNHLDRDSLGALAKALKNFNGG--VVLVSHDEEFISSLCKELWVVEDGKVTPI 560
Query: 504 EKGVHE 509
E G+ +
Sbjct: 561 EGGIDK 566
Score = 44.9 bits (106), Expect = 5e-05
Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 36/189 (19%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY-------DPCSGSVEIEGIDLR 355
+ +L N T+ G LVG +G GK+++ I G + E +
Sbjct: 93 KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRG-DDTEALQSV 151
Query: 356 LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415
L S E F+A + + T +EI + + G
Sbjct: 152 LESDTERLDFLAEEKELLAGL---------------TLEEIYDKILA----------GLG 186
Query: 416 YDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
+ + LS G R+A+ARA+ +LLLDE + LD+ W Q
Sbjct: 187 FTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA--VAWLENYLQTW 244
Query: 475 GRTTIFASH 483
T++ SH
Sbjct: 245 KITSLIVSH 253
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 47.3 bits (112), Expect = 9e-06
Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 26/230 (11%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP----CSGSVEIEGIDLRLLSLE 360
+ V+ T+ GE LVG+SG+GK+ I I + + + IDL LS
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81
Query: 361 EIRRFI----AWVPQHPIM-------IAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFI 409
E R+ + + + Q P + + NI P T K + I
Sbjct: 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI----PAWTYKGRWWQRFGWRKRRAI 137
Query: 410 GCLE----NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
L + I+ L+ G+ Q++ IA A+ +L+ DE ++++ + +I
Sbjct: 138 ELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQI 197
Query: 466 WKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
+++L Q T + SH L I AD + VL+ VE EEL+
Sbjct: 198 FRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 46.5 bits (110), Expect = 2e-05
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 31/219 (14%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
++ + F Y I + N + G LVG +GAGKT++ ++ + G
Sbjct: 12 FAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGG 69
Query: 346 SVEIEGID-LRLLSLE----------EIRRFIAWVPQHPIMIAASVYDNIA-IGCPHATR 393
V++ G SLE E + + + P+ S I +G R
Sbjct: 70 VVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPER 129
Query: 394 KEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453
+E + I L D L +S GQ +R+ I +LK +LLLDE+
Sbjct: 130 RE-----------KLIDIL----DIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEV 174
Query: 454 GSALDIENEQKIWKVLREQ--RRGRTTIFASHRLSAIQD 490
LD+ + + L+E+ +RG T ++A+H ++
Sbjct: 175 TVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET 213
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 46.1 bits (109), Expect = 2e-05
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFAS 482
+ LS G++QR+AIA A+L+++ L DE + LDIE + +R + +T +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 483 HRLSAIQDADMVFVLHDQVIV---EKGVHEELLKKSG 516
H D ++ L D++ V E GV+ + G
Sbjct: 130 H------DLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 45.2 bits (107), Expect = 4e-05
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHR 484
LS G++QR+AIA A+ +D+ DE S LDI+ +++RE + H
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198
Query: 485 LSAIQD--ADMVFVLH 498
L A+ D +D + L+
Sbjct: 199 L-AVLDYLSDYIHCLY 213
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 45.0 bits (107), Expect = 5e-05
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 27/233 (11%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR---FYDPCSGSVEIEGIDLRLLSLEE 361
ILK +N ++ GE A++G +G+GK S S ++ Y G + +G + L EE
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGK-STLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 362 IRR---FIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417
F+A+ Q+PI I S D + + ++ RK + EF+ +
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAY-NSKRKFQGLPEL--DPLEFLEIINEKLK 135
Query: 418 TILGDGAVHL--------STGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
++G L S G+ +R I + L DS + +LDE S LDI+ + I + +
Sbjct: 136 -LVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 470 RE-QRRGRTTIFASH--RLSAIQDADMVFVLHDQVIVEKGVHE--ELLKKSGF 517
+ + I +H RL D V V+ + I++ G E + L+K G+
Sbjct: 195 NKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEKKGY 247
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 44.2 bits (104), Expect = 1e-04
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 427 LSTGQIQRIAIARAI----LKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGRTTIFA 481
LS G+ + A+A + LK P+ +LDE+ LD + Q + + + E +G I
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 482 SHRLSAIQDAD 492
+H + AD
Sbjct: 138 THLPELAELAD 148
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 41.8 bits (98), Expect = 5e-04
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 36/197 (18%)
Query: 312 TVQPGETIALVGDSGAGKTSIFSLIL--------RFYDPCS---------GSVEIEGIDL 354
+PG+ + LVG +G GK++ ++ R+ +P GS E++
Sbjct: 96 IPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGS-ELQNYFT 154
Query: 355 RLLSLEEIRRFIA--WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412
++L + ++ I +V Q P + +V + + E N + + L
Sbjct: 155 KILE-DNLKAIIKPQYVDQIPRAVKGTVGSLLD------RKDERDNKEEVCDQLDLNNLL 207
Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
+ + LS G++QR AIA ++ + + + DE S LD++ K +R
Sbjct: 208 DREVE--------QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSL 259
Query: 473 -RRGRTTIFASHRLSAI 488
R I H LS +
Sbjct: 260 INPDRYIIVVEHDLSVL 276
Score = 36.4 bits (84), Expect = 0.021
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRR 474
+ I+ LS G++QR+A+A + K + + L+DE + LD E KV++
Sbjct: 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHA 506
Query: 475 GRTTIFASHRLSAIQDADMVFVLHDQVIVEKGV 507
+T H D M L D+VIV +G
Sbjct: 507 KKTAFVVEH------DFIMATYLADRVIVFEGQ 533
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 40.0 bits (93), Expect = 0.002
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 427 LSTGQIQRIAIAR--AIL--KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
LS G+ A+A AI + +P +LDE+ +ALD N +++ ++++E + I +
Sbjct: 1067 LSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126
Query: 483 HRLSAIQDADMVFVLHDQVIVEKGV 507
HR ++ AD + + + EKGV
Sbjct: 1127 HRKGTMEAADRLVGVT---MQEKGV 1148
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 39.8 bits (93), Expect = 0.002
Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 27/202 (13%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
RS + T+ +VG +GAGKT+I IE + L
Sbjct: 10 RSFHERSEIEFFSPLTL-IVGQNGAGKTTI----------------IEALKYALTGELPP 52
Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
I + + +A K+ LA I C + + L D
Sbjct: 53 NSKGGAHDPKLIREGEVRAQ-VKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLD 111
Query: 423 GAVHLSTGQ------IQRIAIARAILKDSPILLLDEMGSALDIEN-EQKIWKVLREQRR- 474
S G+ I R+A+A + IL LDE + LD EN E+ + +++ E++
Sbjct: 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ 171
Query: 475 -GRTTIFASHRLSAIQDADMVF 495
I +H + AD ++
Sbjct: 172 KNFQLIVITHDEELVDAADHIY 193
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 38.7 bits (90), Expect = 0.005
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSP--ILLLDEMGSALDIENEQKIWKVLREQ 472
GY T LG LS G++QR+ +A + + P + +LDE + L ++ ++ +V++
Sbjct: 77 GYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135
Query: 473 R-RGRTTIFASHRLSAIQDAD 492
G T I H L + AD
Sbjct: 136 IDLGNTVILIEHNLDVLSSAD 156
>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 251
Score = 37.9 bits (88), Expect = 0.008
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 427 LSTGQIQRIAIA--RAIL--KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
LS GQ +A++ A+L K +P+ +LDE+ +ALD+ + Q I ++++ +G I S
Sbjct: 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVS 226
Query: 483 HRLSAIQDADMVF 495
+ +A+++F
Sbjct: 227 LKEGMFNNANVLF 239
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
protein expressed in rat epithelial cells which is
thought to have an important regulatory role in tight
junction barrier function. Barmotin belongs to the SMC
protein family. SMC proteins are large (approximately
110 to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 197
Score = 37.0 bits (86), Expect = 0.014
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 442 LKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVF 495
++ SP +LDE+ +ALD N ++ ++L+E + I +HR ++ AD ++
Sbjct: 133 VRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLY 186
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 35.9 bits (83), Expect = 0.029
Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 33/210 (15%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSI-FSLILRFYDPCSGSVEIEGIDLRLLSLEE-IR 363
LKNV+ + + + + G SG+GK+S+ F I EG + SL R
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----------EGQRRYVESLSAYAR 59
Query: 364 RFIAWVPQHPIMIAASVYDNIAI------GCPHAT---RKEIQNAAMLAQAH-------E 407
+F+ + + + + IAI P +T EI + L A
Sbjct: 60 QFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLG 119
Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKD--SPILLLDEMGSALDIENEQKI 465
F+ + GY T L A LS G+ QRI +A I + +LDE L + ++
Sbjct: 120 FLVDVGLGYLT-LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRL 178
Query: 466 WKVLREQR-RGRTTIFASHRLSAIQDADMV 494
+ L+ R G T + H I+ AD V
Sbjct: 179 IETLKRLRDLGNTVLVVEHDEDTIRAADHV 208
>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 34.6 bits (79), Expect = 0.072
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 427 LSTGQIQRIAIA--RAIL--KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
LS G+ +A+A AI + +P LLDE+ +ALD +N ++ L+E + I S
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFIVIS 1138
Query: 483 HRLSAIQDADMVF 495
R ++ AD +
Sbjct: 1139 LREEMLEKADRLV 1151
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 34.3 bits (78), Expect = 0.082
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 250 GISQAIASLRRLREL----IVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSI 305
G S I RLR V L I + +S SF + S +
Sbjct: 395 GSSLGIGVEERLRLYQSVPNVLNLKHEIDIGRCALTKTEIPIISLSGNSFAFTSCSLW-L 453
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLI 336
L+ + + +Q E LVG++G GKT++ +
Sbjct: 454 LEQLLWNIQNNEPTLLVGETGTGKTTMIQYL 484
>gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome
protein 2 (chromosome condensation complex Condensin,
subunit E) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1174
Score = 34.2 bits (78), Expect = 0.089
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 427 LSTGQIQRIAIA--RAIL--KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
LS GQ +A++ A+L K +P+ +LDE+ +ALD+ + Q I ++++ I S
Sbjct: 1083 LSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVS 1142
Query: 483 HRLSAIQDADMVF 495
+ +A+++F
Sbjct: 1143 LKEGMFNNANVLF 1155
>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 247
Score = 33.2 bits (76), Expect = 0.20
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 426 HLSTGQ--IQRIAIARAI--LKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRGRTTIF 480
+LS G+ + +A+ AI + +P +LDE+ +ALD N K+ +REQ I
Sbjct: 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIV 214
Query: 481 ASHRLSAIQDAD-MVFVLHDQ 500
S + AD +V V DQ
Sbjct: 215 ISLKEEFFSKADALVGVYRDQ 235
>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
(SMC) proteins are essential for successful chromosome
transmission during replication and segregation of the
genome in all organisms. SMCs are generally present as
single proteins in bacteria, and as at least six
distinct proteins in eukaryotes. The proteins range in
size from approximately 110 to 170 kDa, and each has
five distinct domains: amino- and carboxy-terminal
globular domains, which contain sequences characteristic
of ATPases, two coiled-coil regions separating the
terminal domains , and a central flexible hinge. SMC
proteins function together with other proteins in a
range of chromosomal transactions, including chromosome
condensation, sister-chromatid cohesion, recombination,
DNA repair, and epigenetic silencing of gene
expression..
Length = 178
Score = 32.9 bits (75), Expect = 0.21
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 442 LKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGRTTIFASHRLSAIQDADMVF 495
+K SP +LDE+ +ALD N +++ +++E I + + ++AD +
Sbjct: 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLI 168
>gnl|CDD|38445 KOG3235, KOG3235, KOG3235, Subunit of the major N
alpha-acetyltransferase [General function prediction
only].
Length = 193
Score = 32.7 bits (74), Expect = 0.25
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 30 LRYYCATMLGERMILFMQRDVIAKII-----KLSPSFFNSRGHGEIFSILVKDTERIKAI 84
++YY L + ++ D KI+ K+ + HG I S+ VK + R +
Sbjct: 29 MKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGL 88
Query: 85 IGIGMSIVLRSLLMGFGA 102
M+ R+++ + A
Sbjct: 89 AQKLMNQASRAMVEVYEA 106
>gnl|CDD|145898 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 32.7 bits (75), Expect = 0.27
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 15/140 (10%)
Query: 113 LSLIVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRL 172
LS +V S V L LMV+ L + L + I + L F AG + RL
Sbjct: 261 LSALVGSGVQLLLMVIGTIVFACLGFLSPSNRGSL--LTAAI-VLYALTGFVAGYVSARL 317
Query: 173 YDIQSQKTYKG-FLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFV 231
Y KT+KG + LI T I FV + L ++ +P G +
Sbjct: 318 Y-----KTFKGKKWKRNLILTAFLFPGIVFVIFFVLNFVLWAYG--SSGAIPFGTI--VA 368
Query: 232 VYAFIFFASIRSCLGFIGGI 251
+ F S+ L F+GGI
Sbjct: 369 LLLLWFLVSVP--LTFLGGI 386
>gnl|CDD|35557 KOG0336, KOG0336, KOG0336, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 629
Score = 31.5 bits (71), Expect = 0.59
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 403 AQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAI-LKDSPILLLDEMGSALDIEN 461
+E I L+ G + I+ + G++ + + I L L+LDE LD+
Sbjct: 331 GNRNEQIEDLKRGVEIIIA------TPGRLNDLQMDNVINLASITYLVLDEADRMLDMGF 384
Query: 462 EQKIWKVLREQRRGRTTIFAS-------HRL--SAIQDADMVFV 496
E +I K+L + R R T+ S RL S +++ +V+V
Sbjct: 385 EPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV 428
>gnl|CDD|146848 pfam04412, DUF521, Protein of unknown function (DUF521). Family of
hypothetical proteins.
Length = 397
Score = 31.4 bits (72), Expect = 0.67
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 382 DNIAIGCPHATRKEIQN-AAMLAQAHEFIGC 411
D +A+GCPHA+ +E++ A +LA + G
Sbjct: 288 DLVALGCPHASLEELRELAELLAGRKKAPGV 318
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.2 bits (70), Expect = 0.82
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 434 RIAIARAILKDSPI--LLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASH 483
R+A++ + + + L LDE LD E +K+ ++L E GR I SH
Sbjct: 829 RLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISH 881
Score = 28.5 bits (63), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 300 KSKRSILKNV----NFTVQP---GETIALVGDSGAGKTSIF 333
K R LKN + ++ +VG +GAGK+SI
Sbjct: 2 KILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSIL 42
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 30.9 bits (70), Expect = 0.86
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSG-SV----------EIEGIDLRLLSLEEIRRFIA 367
I L G SG GK+++ +L +DP G SV E++G+D +S EE R I
Sbjct: 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIE 61
>gnl|CDD|133250 cd00154, Rab, Rab family. Rab GTPases form the largest family
within the Ras superfamily. There are at least 60 Rab
genes in the human genome, and a number of Rab GTPases
are conserved from yeast to humans. Rab GTPases are
small, monomeric proteins that function as molecular
switches to regulate vesicle trafficking pathways. The
different Rab GTPases are localized to the cytosolic
face of specific intracellular membranes, where they
regulate distinct steps in membrane traffic pathways. In
the GTP-bound form, Rab GTPases recruit specific sets of
effector proteins onto membranes. Through their
effectors, Rab GTPases regulate vesicle formation,
actin- and tubulin-dependent vesicle movement, and
membrane fusion. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular
organisms possess 5-20 Rab members, several have been
found to possess 60 or more Rabs; for many of these Rab
isoforms, homologous proteins are not found in other
organisms. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Since crystal structures often lack C-terminal
residues, the lipid modification site is not available
for annotation in many of the CDs in the hierarchy, but
is included where possible.
Length = 159
Score = 30.9 bits (71), Expect = 1.0
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
Query: 319 IALVGDSGAGKTSIFSLILRF 339
I L+GDSG GKTS+ +LRF
Sbjct: 3 IVLIGDSGVGKTSL---LLRF 20
>gnl|CDD|144328 pfam00686, CBM_20, Starch binding domain.
Length = 95
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 304 SILKNVNFTVQPGETIALVGD 324
S+ NVN T Q G+ + +VG+
Sbjct: 3 SVTFNVNATTQYGQNVYIVGN 23
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 30.8 bits (69), Expect = 1.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLI 336
N++ T ET +VG +G+GKT++ I
Sbjct: 16 NLDITFGESETTIIVGPNGSGKTTVLDAI 44
>gnl|CDD|34550 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.3 bits (68), Expect = 1.4
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 304 SILKNVNFTVQPGETIALVGDSG 326
SIL N V+ GE IALVG SG
Sbjct: 372 SILVNPGQFVKAGEPIALVGSSG 394
>gnl|CDD|33067 COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion
transport and metabolism].
Length = 717
Score = 30.3 bits (68), Expect = 1.4
Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 32/181 (17%)
Query: 115 LIVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMI------------------KS 156
+I +I+ FL+V + + L +FS +I +
Sbjct: 463 VIATAIL-AFLLVKLGGVDRSVAEKALYVIAALALFSGIIGTLHHYYFIGTPGYWMWIGA 521
Query: 157 VM----VLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLI 212
V V+ F G EA L+ + + R +C +FV G+F FLI
Sbjct: 522 VFSALEVVPLFLLGLEAFELWKRGEGRDWPNRARLPW--SCFVAVGAWFVGAGVF-GFLI 578
Query: 213 GA----HYV--ATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIV 266
+Y LA F VY + A + L + I +A L R ++
Sbjct: 579 NPPIVNYYTHGLQTTAAHAHLAFFGVYGMLALAMMLYALRELRPIGEAPDKLLRWAFWLM 638
Query: 267 C 267
Sbjct: 639 N 639
>gnl|CDD|34459 COG4850, COG4850, Uncharacterized conserved protein [Function
unknown].
Length = 373
Score = 30.0 bits (67), Expect = 1.5
Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 11/95 (11%)
Query: 295 FVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFS--------LILRFYDPCSGS 346
K L+N+ P LVGDSG I++ IL Y
Sbjct: 257 IESGAARKGQSLRNI-LRRYPDRKFVLVGDSGEHDPEIYAEMVRCFPNRILGIYIRDVSG 315
Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVY 381
E RL E + + P +
Sbjct: 316 GERVQSHKRLSLPEVVA--TKPLQGAPPDTPLKGF 348
>gnl|CDD|143853 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 30.2 bits (69), Expect = 1.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 17/52 (32%)
Query: 319 IALVGDSGAGKTSIFSLILRF--------YDPCSG------SVEIEGIDLRL 356
+ LVGD G GK+ SL++RF Y P G ++E++G ++L
Sbjct: 2 LVLVGDGGVGKS---SLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKL 50
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the development
of this type of cancer.
Length = 203
Score = 30.0 bits (68), Expect = 1.9
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 318 TIALVGDSGAGKTSIFSLIL 337
T+ L+G S +GKT++F+ +
Sbjct: 2 TVLLLGPSDSGKTALFTKLT 21
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.8 bits (68), Expect = 2.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 318 TIALVGDSGAGKTSIFSLILR 338
IALVG SG+GKT++ +L
Sbjct: 1 NIALVGHSGSGKTTLAEALLY 21
>gnl|CDD|109538 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 196
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 319 IALVGDSGAGKTSIFSLIL-RFYDPCSGSVEIEGI-DLRLLSLE 360
I + G SGAGKT++ + F + IEG R
Sbjct: 2 IGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFY 45
>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
protein 1 (sister chromatid cohesion complex Cohesin,
subunit SMC1) [Cell cycle control, cell division,
chromosome partitioning].
Length = 1141
Score = 29.5 bits (66), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 443 KDSPILLLDEMGSALDIENEQKIWKVLR 470
K +P +LDE+ +ALD N K+ +R
Sbjct: 1072 KPAPFFVLDEIDAALDNTNIGKVASYIR 1099
>gnl|CDD|133310 cd04110, Rab35, Rab35 subfamily. Rab35 is one of several Rab
proteins to be found to participate in the regulation of
osteoclast cells in rats. In addition, Rab35 has been
identified as a protein that interacts with
nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in
human cells. Overexpression of NPM-ALK is a key
oncogenic event in some anaplastic large-cell lymphomas;
since Rab35 interacts with N|PM-ALK, it may provide a
target for cancer treatments. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 199
Score = 29.4 bits (66), Expect = 2.6
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 5/42 (11%)
Query: 321 LVGDSGAGKTSIFSLILRFYDPC-SGS-VEIEGIDLRLLSLE 360
++GDSG GK+ SL+LRF D SGS + G+D ++ ++E
Sbjct: 11 IIGDSGVGKS---SLLLRFADNTFSGSYITTIGVDFKIRTVE 49
>gnl|CDD|30084 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 679
Score = 29.5 bits (66), Expect = 2.6
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 317 ETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
++I + G+SGAGKT LI+++ +GS + GI+ ++L+ I
Sbjct: 87 QSIIISGESGAGKTENTKLIMKYLASLAGSND-TGIEEKILAANPI 131
>gnl|CDD|185709 cd07898, Adenylation_DNA_ligase, Adenylation domain of
ATP-dependent DNA Ligases. ATP-dependent polynucleotide
ligases catalyze phosphodiester bond formation using
nicked nucleic acid substrates with the high energy
nucleotide of ATP as a cofactor in a three step reaction
mechanism. DNA ligases play a vital role in the diverse
processes of DNA replication, recombination and repair.
ATP-dependent ligases are present in many organisms such
as viruses, bacteriophages, eukarya, archaea and
bacteria. Some organisms express a variety of different
ligases which appear to be targeted to specific
functions. ATP-dependent DNA ligases have a highly
modular architecture consisting of a unique arrangement
of two or more discrete domains including a DNA-binding
domain, an adenylation (nucleotidyltransferase (NTase))
domain, and an oligonucleotide/oligosaccharide binding
(OB)-fold domain. The adenylation domain binds ATP and
contains many of the active-site residues. The
adenylation and C-terminal OB-fold domains comprise a
catalytic core unit that is common to most members of
the ATP-dependent DNA ligase family. The catalytic core
unit contains six conserved sequence motifs (I, III,
IIIa, IV, V and VI) that define this family of related
nucleotidyltransferases.
Length = 201
Score = 29.2 bits (66), Expect = 2.6
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 21/134 (15%)
Query: 391 ATRKEIQNAAMLAQAHEFIGCLENGYDTI-----LGDGAVHL-STGQ----IQRIAIARA 440
A +E AA + +E+ YD I G V + S Q +A A
Sbjct: 6 AHPEESAEAAKAKKPAAAW--VEDKYDGIRAQVHKDGGRVEIFSRSLEDITDQFPELAAA 63
Query: 441 ILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQ 500
+LD G L ++ + + +R GR +D +V + D
Sbjct: 64 AKALPHEFILD--GEILAWDDNRGLPFSELFKRLGRKFRDKFLD----EDVPVVLMAFD- 116
Query: 501 VIVEKGVHEELLKK 514
++ G E LL +
Sbjct: 117 LLYLNG--ESLLDR 128
>gnl|CDD|30102 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 691
Score = 29.5 bits (66), Expect = 2.7
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 317 ETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMI 376
++I + G+SGAGKT I+R++ + G D R +S ++ + + +PIM
Sbjct: 87 QSIIVSGESGAGKTVSAKYIMRYF------ASVGGSDSREVSETQVEEKV--LASNPIME 138
Query: 377 A 377
A
Sbjct: 139 A 139
>gnl|CDD|133266 cd01863, Rab18, Rab18 subfamily. Mammalian Rab18 is implicated in
endocytic transport and is expressed most highly in
polarized epithelial cells. However, trypanosomal Rab,
TbRAB18, is upregulated in the BSF (Blood Stream Form)
stage and localized predominantly to elements of the
Golgi complex. In human and mouse cells, Rab18 has been
identified in lipid droplets, organelles that store
neutral lipids. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Due to the presence of truncated sequences in this CD,
the lipid modification site is not available for
annotation.
Length = 161
Score = 29.2 bits (66), Expect = 2.7
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Query: 319 IALVGDSGAGKTSIFSLILRFYD 341
I L+GDSG GK+ SL+LRF D
Sbjct: 3 ILLIGDSGVGKS---SLLLRFTD 22
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 28.7 bits (64), Expect = 3.6
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 428 STGQ------IQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFA 481
S GQ I R+A+A + +L LDE + LD EN + + K L I
Sbjct: 1185 SAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSR-------IIE 1237
Query: 482 SHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILG 525
R + ++ + HD+ V +LL +S + +++ +
Sbjct: 1238 ERRRQR--NFQLIVITHDEDFV------QLLGRSAYPEYFYRVK 1273
>gnl|CDD|35382 KOG0160, KOG0160, KOG0160, Myosin class V heavy chain
[Cytoskeleton].
Length = 862
Score = 28.8 bits (64), Expect = 3.9
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 30/178 (16%)
Query: 317 ETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMI 376
++I + G+SGAGKT ++ + GSVE I+ ++L+ +PI+
Sbjct: 95 QSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLA------------SNPIL- 141
Query: 377 AASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIA 436
A G TR + N++ + I + I G + + R+
Sbjct: 142 -------EAFGNAKTTRND--NSSRFG---KVIEITFDQQGRISG-AKIRTYLLEKSRVV 188
Query: 437 IARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMV 494
A ++ I G+ E + K+ +R A +S + DA+
Sbjct: 189 QLSAPERNYHIFYQLCAGA----PEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242
>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 276
Score = 28.6 bits (64), Expect = 4.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 427 LSTGQIQRIAIA-RAIL---KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
S G++ R+ +A +AIL P L+ DE+ + + E Q + K L+E R + +
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCIT 230
Query: 483 H 483
H
Sbjct: 231 H 231
>gnl|CDD|35386 KOG0164, KOG0164, KOG0164, Myosin class I heavy chain
[Cytoskeleton].
Length = 1001
Score = 28.4 bits (63), Expect = 4.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 319 IALVGDSGAGKTSIFSLILRFY---DPCSGSVEIEGIDLRLL 357
I + G+SGAGKT +I+++ S EIE + LL
Sbjct: 97 ILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLL 138
>gnl|CDD|36218 KOG1000, KOG1000, KOG1000, Chromatin remodeling protein
HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure
and dynamics].
Length = 689
Score = 28.5 bits (63), Expect = 4.7
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
+ V F ++ G I L + G GKT I R+Y + + +R + + R
Sbjct: 204 REGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNR- 262
Query: 366 IAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424
++P HPI + D + C + I + L+ H+ + + Y ++ D +
Sbjct: 263 --FLPSIHPIFVVDKSSDPLPDVC-TSNTVAIVSYEQLSLLHDILKKEK--YRVVIFDES 317
Query: 425 VHLSTGQIQRIAIARAILKD-SPILLL 450
L + +R A +LK ++LL
Sbjct: 318 HMLKDSKTKRTKAATDLLKVAKHVILL 344
>gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 28.3 bits (63), Expect = 4.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 422 DGAVHLSTGQIQRIAIA---------RAILKDSPILLLDEMGSALD 458
A S GQ + +A+A R + PILLLD++ S LD
Sbjct: 271 PAADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELD 316
>gnl|CDD|35301 KOG0078, KOG0078, KOG0078, GTP-binding protein SEC4, small G
protein superfamily, and related Ras family GTP-binding
proteins [Signal transduction mechanisms, Intracellular
trafficking, secretion, and vesicular transport].
Length = 207
Score = 28.3 bits (63), Expect = 4.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGSVEIE--GIDLRLLSLE 360
+ L+GDSG GKT + +LRF D + I GID ++ ++E
Sbjct: 15 LLLIGDSGVGKTCL---LLRFSDDSFNTSFISTIGIDFKIKTIE 55
>gnl|CDD|133307 cd04107, Rab32_Rab38, Rab38/Rab32 subfamily. Rab32 and Rab38 are
members of the Rab family of small GTPases. Human Rab32
was first identified in platelets but it is expressed in
a variety of cell types, where it functions as an
A-kinase anchoring protein (AKAP). Rab38 has been shown
to be melanocyte-specific. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 201
Score = 28.4 bits (64), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 319 IALVGDSGAGKTSIFSLILRF 339
+ ++GD G GKTSI I R+
Sbjct: 3 VLVIGDLGVGKTSI---IKRY 20
>gnl|CDD|34047 COG4325, COG4325, Predicted membrane protein [Function unknown].
Length = 464
Score = 28.4 bits (63), Expect = 5.3
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 141 ADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQ-SQKTYKGFLRSALIRTCIACFVI 199
D + +L + + + SV + F+ A++L Q S + + FLR + +A F+
Sbjct: 77 GDARGVLIVVAASMISVTGI-VFSITVVALQLASSQFSPRLLRTFLRDVPNQVVLAIFLC 135
Query: 200 FFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLR 259
FV + + A +P+ + ++ A I ++ L + Q +
Sbjct: 136 TFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISIGALIYFLHHLMHSIQIDNIID 195
Query: 260 RLRELIVCKLDISSPISSRTFPSPVLGSVSFR 291
++R + +D P G V
Sbjct: 196 KVRLRTLGLVDQLYPE-----SDDADGQVETP 222
>gnl|CDD|31865 COG1679, COG1679, Uncharacterized conserved protein [Function
unknown].
Length = 403
Score = 28.3 bits (63), Expect = 5.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 382 DNIAIGCPHATRKEIQNAAML 402
D IA+GCPHA+ +E++ A L
Sbjct: 291 DLIALGCPHASLEELRRLAEL 311
>gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 243
Score = 28.3 bits (63), Expect = 5.7
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 427 LSTGQIQRIAIAR--AILK--DSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
LS GQ +A+A AI K +P L DE+ +ALD + + +++E G I +
Sbjct: 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT 218
Query: 483 HRLSAIQDADMVF 495
R ++ AD +
Sbjct: 219 FRPELLEVADKFY 231
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 28.2 bits (63), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 316 GETIALVGDSGAGKTSIFSLIL 337
G+T LVG SG GK+++ + +L
Sbjct: 161 GKTSVLVGQSGVGKSTLINALL 182
>gnl|CDD|133272 cd01869, Rab1_Ypt1, Rab1/Ypt1 subfamily. Rab1 is found in every
eukaryote and is a key regulatory component for the
transport of vesicles from the ER to the Golgi
apparatus. Studies on mutations of Ypt1, the yeast
homolog of Rab1, showed that this protein is necessary
for the budding of vesicles of the ER as well as for
their transport to, and fusion with, the Golgi
apparatus. GTPase activating proteins (GAPs) interact
with GTP-bound Rab and accelerate the hydrolysis of GTP
to GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation of
the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 166
Score = 28.1 bits (63), Expect = 5.8
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 319 IALVGDSGAGKTSIFSLILRFYD 341
+ L+GDSG GK+ L+LRF D
Sbjct: 5 LLLIGDSGVGKS---CLLLRFAD 24
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 28.3 bits (64), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 316 GETIALVGDSGAGKTSIFSLIL 337
G+T L G SG GK+++ + +L
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALL 56
>gnl|CDD|133302 cd04102, RabL3, RabL3 (Rab-like3) subfamily. RabL3s are novel
proteins that have high sequence similarity with Rab
family members, but display features that are distinct
from Rabs, and have been termed Rab-like. As in other
Rab-like proteins, RabL3 lacks a prenylation site at the
C-terminus. The specific function of RabL3 remains
unknown.
Length = 202
Score = 28.2 bits (63), Expect = 5.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 319 IALVGDSGAGKTSIFSLILR 338
+ +VGDSG GK+S+ LI +
Sbjct: 3 VLVVGDSGVGKSSLVHLICK 22
>gnl|CDD|133264 cd01861, Rab6, Rab6 subfamily. Rab6 is involved in
microtubule-dependent transport pathways through the
Golgi and from endosomes to the Golgi. Rab6A of mammals
is implicated in retrograde transport through the Golgi
stack, and is also required for a slow,
COPI-independent, retrograde transport pathway from the
Golgi to the endoplasmic reticulum (ER). This pathway
may allow Golgi residents to be recycled through the ER
for scrutiny by ER quality-control systems. Yeast Ypt6p,
the homolog of the mammalian Rab6 GTPase, is not
essential for cell viability. Ypt6p acts in
endosome-to-Golgi, in intra-Golgi retrograde transport,
and possibly also in Golgi-to-ER trafficking. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the GTP-bound
state. Rabs are further regulated by guanine nucleotide
dissociation inhibitors (GDIs), which facilitate Rab
recycling by masking C-terminal lipid binding and
promoting cytosolic localization. Most Rab GTPases
contain a lipid modification site at the C-terminus,
with sequence motifs CC, CXC, or CCX. Lipid binding is
essential for membrane attachment, a key feature of most
Rab proteins. Due to the presence of truncated sequences
in this CD, the lipid modification site is not available
for annotation.
Length = 161
Score = 27.9 bits (63), Expect = 6.1
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 319 IALVGDSGAGKTSIFSLILRF-YD 341
+ +GD GKTSI I RF YD
Sbjct: 3 LVFLGDQSVGKTSI---ITRFMYD 23
>gnl|CDD|34627 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 28.0 bits (62), Expect = 6.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 317 ETIALVGDSGAGKTSIFSLILRFYDPCSGS--VEIEGIDLRLL 357
+TI + G+SGAGKT I+++ + S VEI I+ ++L
Sbjct: 153 QTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQIL 195
>gnl|CDD|133270 cd01867, Rab8_Rab10_Rab13_like, Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are
known or suspected to be involved in post-Golgi
transport to the plasma membrane. It is likely that
these Rabs have functions that are specific to the
mammalian lineage and have no orthologs in plants. Rab8
modulates polarized membrane transport through
reorganization of actin and microtubules, induces the
formation of new surface extensions, and has an
important role in directed membrane transport to cell
surfaces. The Ypt2 gene of the fission yeast
Schizosaccharomyces pombe encodes a member of the
Ypt/Rab family of small GTP-binding proteins, related in
sequence to Sec4p of Saccharomyces cerevisiae but closer
to mammalian Rab8. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Due to the presence of truncated sequences in this CD,
the lipid modification site is not available for
annotation.
Length = 167
Score = 28.0 bits (63), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 321 LVGDSGAGKTSIFSLILRFYD 341
L+GDSG GK+ L+LRF +
Sbjct: 8 LIGDSGVGKS---CLLLRFSE 25
>gnl|CDD|153130 cd01355, AcnX, Putative Aconitase X catalytic domain. Putative
Aconitase X catalytic domain. It is predicted by
comparative genomic analysis. The proteins are mainly
found in archaea and proteobacteria. They are distantly
related to Aconitase family of proteins by sequence
similarity and seconary structure prediction. The
functions have not yet been experimentally
characterized. Thus, the prediction should be treated
with caution.
Length = 389
Score = 28.1 bits (63), Expect = 6.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 382 DNIAIGCPHATRKEIQNAA 400
D + +GCPHA+ +E++ A
Sbjct: 280 DLVVLGCPHASLEELRKLA 298
>gnl|CDD|35315 KOG0092, KOG0092, KOG0092, GTPase Rab5/YPT51 and related small G
protein superfamily GTPases [Intracellular trafficking,
secretion, and vesicular transport].
Length = 200
Score = 28.0 bits (62), Expect = 7.0
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
Query: 319 IALVGDSGAGKTSIFSLILRF 339
+ L+GDSG GK+S+ +LRF
Sbjct: 8 VVLLGDSGVGKSSL---VLRF 25
>gnl|CDD|133271 cd01868, Rab11_like, Rab11-like. Rab11a, Rab11b, and Rab25 are
closely related, evolutionary conserved Rab proteins
that are differentially expressed. Rab11a is
ubiquitously synthesized, Rab11b is enriched in brain
and heart and Rab25 is only found in epithelia. Rab11/25
proteins seem to regulate recycling pathways from
endosomes to the plasma membrane and to the trans-Golgi
network. Furthermore, Rab11a is thought to function in
the histamine-induced fusion of tubulovesicles
containing H+, K+ ATPase with the plasma membrane in
gastric parietal cells and in insulin-stimulated
insertion of GLUT4 in the plasma membrane of
cardiomyocytes. Overexpression of Rab25 has recently
been observed in ovarian cancer and breast cancer, and
has been correlated with worsened outcomes in both
diseases. In addition, Rab25 overexpression has also
been observed in prostate cancer, transitional cell
carcinoma of the bladder, and invasive breast tumor
cells. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs) interact
with GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 165
Score = 27.9 bits (63), Expect = 7.1
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 319 IALVGDSGAGKTSIFSLILRF 339
I L+GDSG GK+++ S RF
Sbjct: 6 IVLIGDSGVGKSNLLS---RF 23
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the
condensation of acetyl coenzyme A (AcCoA) and
oxalacetate (OAA) to form citrate and coenzyme A (CoA),
the first step in the oxidative citric acid cycle (TCA
or Krebs cycle). Peroxisomal CS is involved in the
glyoxylate cycle. This group also includes CS proteins
which functions as a 2-methylcitrate synthase (2MCS).
2MCS catalyzes the condensation of propionyl-CoA (PrCoA)
and OAA to form 2-methylcitrate and CoA during
propionate metabolism. This group contains proteins
which functions exclusively as either a CS or a 2MCS, as
well as those with relaxed specificity which have dual
functions as both a CS and a 2MCS. The overall CS
reaction is thought to proceed through three partial
reactions and involves both closed and open
conformational forms of the enzyme: a) the carbanion or
equivalent is generated from AcCoA by base abstraction
of a proton, b) the nucleophilic attack of this
carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and form
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). Some type II CSs
are strongly and specifically inhibited by NADH through
an allosteric mechanism. This subgroup includes both
gram-positive and gram-negative bacteria..
Length = 265
Score = 28.0 bits (63), Expect = 7.3
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 24/102 (23%)
Query: 449 LLDEMGSALDIENEQKIWKVLREQRR----G---------RTTIF--ASHRLSAIQDADM 493
+L+E+G+ + E I K L +R G R T+ + +L + D
Sbjct: 130 MLEEIGTPKNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDP 189
Query: 494 VFVLHDQVIVEKGVHEELLKKS-----GFYAH--YHILGMSQ 528
+F L + +EK E L +K FY+ Y +G
Sbjct: 190 MFELAAE--LEKIAPEVLYEKKLYPNVDFYSGVLYKAMGFPT 229
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 27.8 bits (62), Expect = 7.4
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLIL---------RFYDPCSGSVEIEGIDLRL 356
LKN++ + G + G SG+GK+++ + L + +IEG
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEG----- 671
Query: 357 LSLEEIRRFIAWVPQHPI 374
LE I + I + Q PI
Sbjct: 672 --LEHIDKVID-IDQSPI 686
Score = 27.8 bits (62), Expect = 8.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSI 332
LKN++ + + + + G SG+GK+S+
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
>gnl|CDD|30100 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle..
Length = 674
Score = 27.9 bits (62), Expect = 7.6
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 323 GDSGAGKTSIFSLILRFYDPCSGSVE-IEGIDLRLL 357
G+SGAGKT I+++ SG + +E + +L
Sbjct: 93 GESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVIL 128
>gnl|CDD|133317 cd04117, Rab15, Rab15 subfamily. Rab15 colocalizes with the
transferrin receptor in early endosome compartments, but
not with late endosomal markers. It codistributes with
Rab4 and Rab5 on early/sorting endosomes, and with Rab11
on pericentriolar recycling endosomes. It is believed to
function as an inhibitory GTPase that regulates distinct
steps in early endocytic trafficking. GTPase activating
proteins (GAPs) interact with GTP-bound Rab and
accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the GTP-bound
state. Rabs are further regulated by guanine nucleotide
dissociation inhibitors (GDIs), which facilitate Rab
recycling by masking C-terminal lipid binding and
promoting cytosolic localization. Most Rab GTPases
contain a lipid modification site at the C-terminus,
with sequence motifs CC, CXC, or CCX. Lipid binding is
essential for membrane attachment, a key feature of most
Rab proteins. Due to the presence of truncated
sequences in this CD, the lipid modification site is not
available for annotation.
Length = 161
Score = 27.6 bits (61), Expect = 7.8
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 321 LVGDSGAGKTSIFSLILRFYDPCSGSVEIE--GIDLRLLSLE 360
L+GDSG GKT L+ RF D S I G+D ++ ++E
Sbjct: 5 LIGDSGVGKT---CLLCRFTDNEFHSSHISTIGVDFKMKTIE 43
>gnl|CDD|144966 pfam01566, Nramp, Natural resistance-associated macrophage protein.
The natural resistance-associated macrophage protein
(NRAMP) family consists of Nramp1, Nramp2, and yeast
proteins Smf1 and Smf2. The NRAMP family is a novel
family of functional related proteins defined by a
conserved hydrophobic core of ten transmembrane domains.
This family of membrane proteins are divalent cation
transporters. Nramp1 is an integral membrane protein
expressed exclusively in cells of the immune system and
is recruited to the membrane of a phagosome upon
phagocytosis. By controlling divalent cation
concentrations Nramp1 may regulate the interphagosomal
replication of bacteria. Mutations in Nramp1 may
genetically predispose an individual to susceptibility
to diseases including leprosy and tuberculosis
conversely this might however provide protection form
rheumatoid arthritis. Nramp2 is a multiple divalent
cation transporter for Fe2+, Mn2+ and Zn2+ amongst
others it is expressed at high levels in the intestine;
and is major transferrin-independent iron uptake system
in mammals. The yeast proteins Smf1 and Smf2 may also
transport divalent cations.
Length = 365
Score = 27.9 bits (63), Expect = 8.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 171 RLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVF 210
R + I+ + + LR A I T IA + ++ I IV
Sbjct: 186 RGWTIRDPASIREALRYARIDTIIALVLAGLINAAILIVA 225
>gnl|CDD|38863 KOG3659, KOG3659, KOG3659, Sodium-neurotransmitter symporter
[Signal transduction mechanisms].
Length = 629
Score = 27.6 bits (61), Expect = 8.1
Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 38/128 (29%)
Query: 184 FLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVV----------- 232
R AL+ + I C F IF V Y+AT P + E +V
Sbjct: 356 CYRDALLTSIINCLTSFLSGFVIFSVL----GYMATLIYPCNEEIEELVAVAGPGLAFIV 411
Query: 233 -------------YAFIFFA-----SIRSCLGFIGGISQAIA-----SLRRLRELIVCKL 269
++ IFF + S G I I + SLR+ REL +
Sbjct: 412 YPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGIEAIITPLLDEFYLSLRKHRELFTLLV 471
Query: 270 DISSPISS 277
+ S +
Sbjct: 472 CLFSFLLG 479
>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 27.8 bits (62), Expect = 8.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 316 GETIALVGDSGAGKTSIFSLILRFYDPCSGSV----------EIEGIDLRLLSLEEIRRF 365
G I L G SG GK+++ +L D SV E++G+D ++ EE
Sbjct: 4 GLLIVLSGPSGVGKSTLVKALLE-DDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEEL 62
Query: 366 IA 367
I
Sbjct: 63 IE 64
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 27.5 bits (61), Expect = 8.3
Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 29/188 (15%)
Query: 309 VNFT-VQPGETIALVGDSGAGKTSIFSLI-LRFYDPCSGSVEIEGIDLRLLSLEEIRRFI 366
++FT + + G +GAGK++I I Y E + E+
Sbjct: 20 IDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79
Query: 367 AWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH 426
Y + +L Q +D L
Sbjct: 80 FTFQLGGK-----KYR--VERSRGLDYDQFTRIVLLPQ---------GEFDRFLARPVST 123
Query: 427 LSTGQIQRIAIARAILKDSPI----------LLLDEMGSALDIENEQKIWKVLREQRR-G 475
LS G+ +++ A+ + L +DE LD E + + L R
Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN 183
Query: 476 RTTIFASH 483
R SH
Sbjct: 184 RMVGVISH 191
>gnl|CDD|35551 KOG0330, KOG0330, KOG0330, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 476
Score = 27.6 bits (61), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 448 LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
L+LDE LD++ E+++ +L+ R R T S
Sbjct: 208 LVLDEADRLLDMDFEEELDYILKVIPRERQTFLFS 242
>gnl|CDD|35307 KOG0084, KOG0084, KOG0084, GTPase Rab1/YPT1, small G protein
superfamily, and related GTP-binding proteins [Signal
transduction mechanisms, Intracellular trafficking,
secretion, and vesicular transport].
Length = 205
Score = 27.5 bits (61), Expect = 8.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 11/47 (23%)
Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGS-----VEIEGIDLRLLSLE 360
I L+GDSG GKT L+LRF + + G+D ++ ++E
Sbjct: 12 IILIGDSGVGKT---CLLLRF---KDDTFTESYISTIGVDFKIRTVE 52
>gnl|CDD|73001 cd03242, ABC_RecF, RecF is a recombinational DNA repair ATPase that
maintains replication in the presence of DNA damage.
When replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 270
Score = 27.5 bits (61), Expect = 8.8
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 428 STGQIQR----------IAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRT 477
S GQ QR I + + + + P+LLLD++ + LD+ + + + + R +T
Sbjct: 185 SQGQ-QRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAI--EGRVQT 241
Query: 478 TIFASHR 484
+ +
Sbjct: 242 FVTTTDL 248
>gnl|CDD|30103 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 671
Score = 27.6 bits (61), Expect = 9.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 317 ETIALVGDSGAGKTSIFSLILRFYDPCSG 345
+ I + G+SGAGKT LIL++ SG
Sbjct: 87 QCIIISGESGAGKTESTKLILQYLAAISG 115
>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 27.5 bits (61), Expect = 9.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 313 VQPGETIALVGDSGAGKTSIFSLILRFYD 341
++ G+ + L GD GAGKT++ I +
Sbjct: 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.328 0.141 0.408
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,317,836
Number of extensions: 353568
Number of successful extensions: 2258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2061
Number of HSP's successfully gapped: 315
Length of query: 528
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 430
Effective length of database: 4,146,055
Effective search space: 1782803650
Effective search space used: 1782803650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.8 bits)