RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family,
fused ATPase and inner membrane subunits [Candidatus Liberibacter
asiaticus str. psy62]
         (528 letters)



>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
            This protein is related to a Proteobacterial ATP
           transporter that exports lipid A and to eukaryotic
           P-glycoproteins.
          Length = 576

 Score =  433 bits (1115), Expect = e-122
 Identities = 209/515 (40%), Positives = 300/515 (58%), Gaps = 21/515 (4%)

Query: 18  MFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKD 77
           + V L+LA+ ++ R+Y  T LGER++  ++R V A +I LSPSFF+    GE+ S L  D
Sbjct: 65  LVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTD 124

Query: 78  TERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKF------ 131
           T  ++++IG  +S+ LR+ LM  G + MMF+ S KL+ +V+  V L L+ ++ F      
Sbjct: 125 TTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRK 184

Query: 132 -SRKKTNTL-----YADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFL 185
            SR+  + +     YA E          + ++  +Q+F         +    +K Y+   
Sbjct: 185 LSRESQDRIADAGSYAGE---------TLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235

Query: 186 RSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCL 245
           +    R  +   VI  V   I  V  +GAH V   +M  G L +FV YA +   SI +  
Sbjct: 236 QRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLS 295

Query: 246 GFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSI 305
              G + +A  +  RL EL+  + DI +P   +T P P+ G + F  V+F YP +  +  
Sbjct: 296 EVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA 355

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           L  +N TV+PGET+ALVG SGAGK+++F L+LRFYDP SG + ++G+DLR L   E+R  
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415

Query: 366 IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAV 425
           +A VPQ P++ AASV +NI  G P AT +E++ AA  A AHEFI  L  GYDT LG+  V
Sbjct: 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGV 475

Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485
            LS GQ QRIAIARAILKD+PILLLDE  SALD E+EQ + + L    +GRTT+  +HRL
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL 535

Query: 486 SAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAH 520
           + +  AD + V+    IV +G H EL+ K G YA 
Sbjct: 536 ATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYAR 570


>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. 
          Length = 711

 Score =  294 bits (754), Expect = 4e-80
 Identities = 156/526 (29%), Positives = 261/526 (49%), Gaps = 43/526 (8%)

Query: 18  MFVLLLLAVASS----LRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSI 73
           +F + LL++ASS    LR         R+ L ++ D+   +++    FF+    GE+ S 
Sbjct: 204 IFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSR 263

Query: 74  LVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR 133
           L  DT+ +   + + ++++LR+L+M  G +  M  +S +L++     VTL  + ++  + 
Sbjct: 264 LSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTM-----VTLINLPLVFLAE 318

Query: 134 KKTNTLY-ADEKKLLNIF---SDMIKSVM----VLQSF-NAGKEAIRLYDIQSQKTYKGF 184
           K     Y    ++L       + + +  +     ++SF     EA R         +K  
Sbjct: 319 KVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASR---------FKEA 369

Query: 185 LRS--ALIRTCIACFVIFFVS---CGIFIVFLI---GAHYVATAEMPRGKLAEFVVYAFI 236
           L     L +     +  +  +    G+ I  L+   G   V T ++  G L  F++Y   
Sbjct: 370 LEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQ 429

Query: 237 FFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFV 296
              ++R       G+ QA+ +  ++ E +  K +I    +    P  + G + F+ VSF 
Sbjct: 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA--PLNLEGLIEFQDVSFS 487

Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356
           YP +    +LK + FT+ PGE +ALVG SG+GK+++ +L+   Y P  G V ++G+ L  
Sbjct: 488 YPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ 547

Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416
                + R +A V Q P++ + SV +NIA G      +EI  AA  A AH+FI    NGY
Sbjct: 548 YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGY 607

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI--WKVLREQRR 474
           DT +G+    LS GQ QRIAIARA+++   +L+LDE  SALD E EQ +   +     R 
Sbjct: 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESR----SRA 663

Query: 475 GRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAH 520
            RT +  +HRLS ++ AD + VL    +VE G H++L++  G Y H
Sbjct: 664 SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
           MsbA.  This family consists of a single polypeptide
           chain transporter in the ATP-binding cassette (ABC)
           transporter family, MsbA, which exports lipid A. It may
           also act in multidrug resistance. Lipid A, a part of
           lipopolysaccharide, is found in the outer leaflet of the
           outer membrane of most Gram-negative bacteria. Members
           of this family are restricted to the Proteobacteria
           (although lipid A is more broadly distributed) and often
           are clustered with lipid A biosynthesis genes.
          Length = 571

 Score =  272 bits (697), Expect = 2e-73
 Identities = 158/533 (29%), Positives = 269/533 (50%), Gaps = 20/533 (3%)

Query: 8   KRDVSLYLWGMFVLLLLAV----ASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFN 63
            RD S+  W   V++ LAV     S +  Y  + +  +++  ++  +  K++ L  SFF+
Sbjct: 47  GRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD 106

Query: 64  SRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTL 123
            +  G + S +  D+E++ +       +++R  L   G   ++   S +L+LIVV ++ +
Sbjct: 107 RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV 166

Query: 124 FLMVMIKFSR------KKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQS 177
             ++M + S+      K+          +  +  + ++   V++ F       R +D  S
Sbjct: 167 LSILMRRVSKRLRRISKEIQNSMGQ---VTTVAEETLQGYRVVKLFGGQAYETRRFDAVS 223

Query: 178 QKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIF 237
            +  +  ++     +  +       S  + +V  I         +  G    F+      
Sbjct: 224 NRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIAL 283

Query: 238 FASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSP-VLGSVSFRSVSFV 296
              ++S       + + +A+   L  L    LD      + T       G V FR+V+F 
Sbjct: 284 IRPLKSLTNVNAPMQRGLAAAESLFTL----LDSPPEKDTGTRAIERARGDVEFRNVTFR 339

Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356
           YPG+  R  L +++  ++PGET+ALVG SG+GK+++ +LI RFY+P SG + ++G DL  
Sbjct: 340 YPGRD-RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398

Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENG 415
            +L  +RR +A V Q  ++   ++ +NIA G    A R EI+ A   A A +F+  L  G
Sbjct: 399 YTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG 458

Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRG 475
            DT +G+  V LS GQ QR+AIARA+LKD+PIL+LDE  SALD E+E+ +   L    +G
Sbjct: 459 LDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518

Query: 476 RTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMSQ 528
           RTT+  +HRLS I+ AD + V+ D  IVE+G H ELL ++G YA  H +   +
Sbjct: 519 RTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQFRE 571


>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
           Provisional.
          Length = 588

 Score =  268 bits (688), Expect = 2e-72
 Identities = 146/429 (34%), Positives = 234/429 (54%), Gaps = 28/429 (6%)

Query: 105 MMFVISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYAD-EKKLLNIF---SDMIKSVMVL 160
           +   ++ +LSL++V +  ++ + +     +KT    A  E+   ++F   SD I +V V+
Sbjct: 150 LALFMNWRLSLVLVVLGIVYTL-ITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVV 208

Query: 161 QSFN---AGKEAIR-----LYDIQSQKTYKGFLRSALIR--TCIACFVIFFVSCGIFIVF 210
           QS+N   A  +A+R     L   Q        L S L R  + I           +  + 
Sbjct: 209 QSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTIT----------MLAIL 258

Query: 211 LIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLD 270
           ++GA  V   ++  G++  FV +A +    +   + FI  +  A   L    E+     D
Sbjct: 259 VLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD 318

Query: 271 ISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKT 330
           +  P  +      V G+V F  VSF Y     R  +++V+F  +PG+T+A+VG +GAGK+
Sbjct: 319 VRDPPGAID-LGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKS 375

Query: 331 SIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPH 390
           ++ +L+ R +DP SG + I+G D+R ++   +RR IA V Q   +   S+ DNI +G P 
Sbjct: 376 TLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435

Query: 391 ATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLL 450
           AT +E++ AA  AQAH+FI    +GYDT++G+    LS G+ QR+AIARA+LKD PIL+L
Sbjct: 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495

Query: 451 DEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEE 510
           DE  SALD+E E K+   L E  +GRTT   +HRLS +++AD + V  +  +VE G  +E
Sbjct: 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555

Query: 511 LLKKSGFYA 519
           L+ + G +A
Sbjct: 556 LVARGGRFA 564


>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
           Provisional.
          Length = 582

 Score =  249 bits (637), Expect = 2e-66
 Identities = 175/568 (30%), Positives = 281/568 (49%), Gaps = 90/568 (15%)

Query: 8   KRDVSLYLWGMFVLLLL----AVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFN 63
           K D S+  W   V++ L     + S +  YC + +  ++++ M+R +   ++ +  SFF+
Sbjct: 58  KADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD 117

Query: 64  SRGHGEIFSILVKDTERI-----KAIIGI---GMSIVLRSLLMGFGAMCMMFVISIKLSL 115
            +  G + S +  D+E++      A+I +   G SI+        G   MMF  S +LSL
Sbjct: 118 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASII--------GLFIMMFYYSWQLSL 169

Query: 116 IVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSD-------MIKSVMVLQSFNAGKE 168
           I++ ++   + + I+   K+   +    K + N           M+K    +  F   + 
Sbjct: 170 ILI-VIAPIVSIAIRVVSKRFRNI---SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEV 225

Query: 169 AIRLYDIQS----QKTYKGFLRSAL---IRTCIACFVIFFVSCGIFIVFLIGAHYVATAE 221
             + +D  S    Q+  K    S++   I   IA   + FV             Y A+  
Sbjct: 226 ETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVL------------YAAS-- 271

Query: 222 MPRGKLAEFVVYAFIFFASIRSCL--GFIGGI-SQAIASLRRLREL-----------IVC 267
                           F S+   L  G I  + S  IA +R L+ L             C
Sbjct: 272 ----------------FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315

Query: 268 K-----LDISSPISSRTF-PSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIAL 321
           +     LD+               G + FR+V+F YPGK   + L+N+NF +  G+T+AL
Sbjct: 316 QTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPA-LRNINFKIPAGKTVAL 374

Query: 322 VGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVY 381
           VG SG+GK++I +L+ RFYD   G + ++G DLR  +L  +R  +A V Q+  +   ++ 
Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434

Query: 382 DNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARA 440
           +NIA       +R++I+ AA +A A +FI  ++NG DT++G+  V LS GQ QRIAIARA
Sbjct: 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494

Query: 441 ILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQ 500
           +L+DSPIL+LDE  SALD E+E+ I   L E ++ RT++  +HRLS I+ AD + V+ D 
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG 554

Query: 501 VIVEKGVHEELLKKSGFYAHYHILGMSQ 528
            IVE+G H ELL ++G YA  H +   Q
Sbjct: 555 EIVERGTHAELLAQNGVYAQLHKMQFGQ 582


>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein.  This model
           describes glucan exporter ATP binding protein in
           bacteria. It belongs to the larger ABC transporter
           superfamily with the characteristic ATP binding motif.
           The In general, this protein is in some ways implicated
           in osmoregulation and suggested to participate in the
           export of glucan from the cytoplasm to periplasm. The
           cyclic beta-1,2-glucan in the bactrerial periplasmic
           space is suggested to confer the property of high
           osmolority. It has also been demonstrated that mutants
           in this loci have lost functions of virulence and
           motility. It is unclear as to how virulence and
           osmoadaptaion are related.
          Length = 585

 Score =  230 bits (589), Expect = 5e-61
 Identities = 160/534 (29%), Positives = 265/534 (49%), Gaps = 41/534 (7%)

Query: 7   DKRDVS--LYLWGMF----VLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPS 60
            K DV   L LW  F     +  + VA       A  L       +  +   +II +  S
Sbjct: 51  SKSDVLPTLALWAGFGVFNTIAYVLVARE-----ADRLAHGRRATLLTEAFGRIISMPLS 105

Query: 61  FFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMM----FVISIKLSLI 116
           +   RG       L++ TE    + G+ +   +R  L  F A+ ++    F +  +LS++
Sbjct: 106 WHQQRGTSNALHTLLRATE---TLFGLWLEF-MRQHLATFVALFLLIPTAFAMDWRLSIV 161

Query: 117 VVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIF---SDMIKSVMVLQSFNAGKEAIRLY 173
           ++ +  L++++     ++  N   A E    N+F   SD I +V V+ S+N  +      
Sbjct: 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSAL 221

Query: 174 DIQSQKTYKG--------FLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRG 225
              +               L S L R           +  +  + +IG   V   E+  G
Sbjct: 222 KQFTNNLLSAQYPVLDWWALASGLNRMA--------STISMMCILVIGTVLVIKGELSVG 273

Query: 226 KLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVL 285
           ++  F+ +A +    +    GFI  I +A A L    +L         P  +   P+ V 
Sbjct: 274 EVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPN-VK 332

Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
           G+V FR ++F +   S+   + +V+F  + G+T+A+VG +GAGKT++ +L+ R YDP  G
Sbjct: 333 GAVEFRHITFEFANSSQG--VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390

Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
            + I+GID+  ++ E +R+ IA V Q   +   S+ +NI +G   AT +E+  AA  A A
Sbjct: 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAA 450

Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
           H+FI    NGYDT++G+    LS G+ QR+AIARAILK++PIL+LDE  SALD+E E ++
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510

Query: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
              +   R+ RTT   +HRLS +++AD+V  L    ++EKG  +EL++K G + 
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFY 564


>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
           Unfortunately, the gene symbol nomenclature adopted
           based on this operon in B. subtilis assigns cydC to the
           third gene in the operon where this gene is actually
           homologous to the E. coli cydD gene. We have chosen to
           name all homologs in this family in accordance with the
           precedence of publication of the E. coli name, CydD.
          Length = 529

 Score =  229 bits (585), Expect = 2e-60
 Identities = 146/510 (28%), Positives = 243/510 (47%), Gaps = 50/510 (9%)

Query: 15  LWGMFVLLLLAVASSLRYYCATMLGERMILF--------MQRDVIAKIIKLSPSFFNSRG 66
           L      L LAV   LR      LGER            ++  ++A +  L P +   R 
Sbjct: 43  LLPALGALALAVL--LRA-LLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRP 99

Query: 67  HGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVI------SIKLSLIVVSI 120
            GE+ ++     E ++A+ G     + + +L     + ++  +      S  + L+   +
Sbjct: 100 SGELATLA---LEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPL 156

Query: 121 VTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGK-EAIRLYDIQSQK 179
           + +F++++   ++      +A   +L   F D ++ +  L+ F   K +A  +     + 
Sbjct: 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEE- 215

Query: 180 TYKGFLRSALIRTC-IA---CFVI-FFVSCGIFIVFL-IGAHYVATAEMPRGKL----AE 229
                 R   +R   IA     V+  F +  + +V + IG   +A      G L      
Sbjct: 216 -----YRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLA------GDLDLATGL 264

Query: 230 FV-VYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRT-FPSPVLGS 287
           FV + A  F+  +R         +  +A+   L  +    LD   P++ +    +    S
Sbjct: 265 FVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAV----LDAPRPLAGKAPVTAAPAPS 320

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + F  +S  YPG+     L+ V+FTV PGE +ALVG SGAGK+++ +L+L F DP  GS+
Sbjct: 321 LEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379

Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
            + G+ L     +  R  IAWVPQHP + A ++ +NI +  P A+  EI+ A   A   E
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDE 439

Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
           F+  L  G DT++G+G   LS GQ QR+A+ARA L+D+P+LLLDE  + LD E E  + +
Sbjct: 440 FVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE 499

Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVL 497
            LR   +GRT +  +HRL+  + AD + VL
Sbjct: 500 ALRALAQGRTVLLVTHRLALAERADRIVVL 529


>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
           family.  Type I protein secretion is a system in some
           Gram-negative bacteria to export proteins (often
           proteases) across both inner and outer membranes to the
           extracellular medium. This is one of three proteins of
           the type I secretion apparatus. Targeted proteins are
           not cleaved at the N-terminus, but rather carry signals
           located toward the extreme C-terminus to direct type I
           secretion. This model is related to models TIGR01842 and
           TIGR01846, and to bacteriocin ABC transporters that
           cleave their substrates during export.
          Length = 694

 Score =  218 bits (557), Expect = 3e-57
 Identities = 101/264 (38%), Positives = 159/264 (60%), Gaps = 4/264 (1%)

Query: 252 SQAIASLRRLRELIVCKLDISSPISSRTFPSPVL-GSVSFRSVSFVYPGKSKRSILKNVN 310
            QA  +L+ L EL+  +L +  P  +R    P L G + FR+VSF YPG  +   L NV+
Sbjct: 429 QQAKTALQSLDELM--QLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVS 485

Query: 311 FTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVP 370
            T++PGE +A++G  G+GK+++  L+L  Y P  GSV ++G+D+R +   ++RR I +VP
Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545

Query: 371 QHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTG 430
           Q P +   ++ DNIA+G P+A  +EI  AA LA   EF+    +G D  +G+    LS G
Sbjct: 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605

Query: 431 QIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQD 490
           Q Q +A+ARA+L+D PILLLDE  SA+D  +E++    L+    G+T +  +HR S +  
Sbjct: 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL 665

Query: 491 ADMVFVLHDQVIVEKGVHEELLKK 514
            D + V+ +  IV  G  +++L+ 
Sbjct: 666 VDRIIVMDNGRIVADGPKDQVLEA 689


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score =  214 bits (547), Expect = 4e-56
 Identities = 158/538 (29%), Positives = 249/538 (46%), Gaps = 64/538 (11%)

Query: 17  GMFVLLLLAVA-SSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILV 75
            M  + +   A   LR Y    L  R+ + +   +   ++ L   +F SR  G+  +  V
Sbjct: 184 AMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVA-RV 242

Query: 76  KDTERIKAII-GIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVV-SIVTLFLMVMI---- 129
           ++ E+I+  + G  +++VL  LL     + +MF  S  L+ +V+ S+V   L+ +     
Sbjct: 243 RELEQIRNFLTGSALTVVL-DLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPI 301

Query: 130 -------KFSRKKTNTLY--------------ADEKKLLNIFSDMIKSVMVLQSFNAGKE 168
                  KF R    T +              A E +  N +   +          A   
Sbjct: 302 LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLA-----AYVAASFR 356

Query: 169 AIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLA 228
              L +I  Q          LI+      +++F           GAH V    +  G+L 
Sbjct: 357 VTNLGNIAGQAI-------ELIQKLTFAILLWF-----------GAHLVIGGALSPGQLV 398

Query: 229 EFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRT---FPSPVL 285
            F + A      +           Q   +L RL +++      +SP   R+      P L
Sbjct: 399 AFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDIL------NSPTEPRSAGLAALPEL 452

Query: 286 -GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344
            G+++F ++ F Y   S   +L N+N  ++PGE I +VG SG+GK+++  L+ R Y P  
Sbjct: 453 RGAITFENIRFRYAPDSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511

Query: 345 GSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQ 404
           G V ++G+DL +     +RR +  V Q  ++ + S+ DNIA+  P A  + + +AA LA 
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAG 571

Query: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464
           AH+FI  L  GY+T +G+   +LS GQ QRIAIARA++ +  IL+ DE  SALD E+E  
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631

Query: 465 IWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYH 522
           I + +RE  RGRT I  +HRLS ++  D + VL    I E G HEELL   G YA   
Sbjct: 632 IMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLW 689


>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 588

 Score =  210 bits (537), Expect = 7e-55
 Identities = 86/215 (40%), Positives = 134/215 (62%), Gaps = 1/215 (0%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
           +   +NFT+  G+ IALVG SGAGKTS+ + +L F  P  GS++I GI+LR L  E  R+
Sbjct: 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK 423

Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424
            ++WV Q+P +   ++ DN+ +G P A+ +++Q A   A   EF+  L  G DT +GD A
Sbjct: 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483

Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHR 484
             LS GQ QR+A+ARA+L+   +LLLDE  ++LD  +EQ + + L    R +TT+  +H+
Sbjct: 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ 543

Query: 485 LSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
           L  +   D ++V+ D  IV++G + EL +  G +A
Sbjct: 544 LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFA 578


>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 569

 Score =  208 bits (532), Expect = 2e-54
 Identities = 93/225 (41%), Positives = 143/225 (63%), Gaps = 1/225 (0%)

Query: 294 SFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGID 353
            F YP  +    L+NVNFT++PG+ + + G +G+GK+++ SLI R +D   G +    I 
Sbjct: 320 QFTYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378

Query: 354 LRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLE 413
           L  L L+  R  +A V Q P + + +V +NIA+G P AT++EI++ A LA  H+ I  L 
Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP 438

Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473
            GYDT +G+  V LS GQ QRI+IARA+L ++ IL+LD+  SA+D   E +I   LR+  
Sbjct: 439 QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498

Query: 474 RGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFY 518
            GRT I ++HRLSA+ +A  + V+    I ++G H++L ++SG+Y
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWY 543


>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
           transporter, peptidase/ATP-binding protein.  This
           protein describes an multidomain ABC transporter subunit
           that is one of three protein families associated with
           some regularity with a distinctive family of putative
           bacteriocins. It includes a bacteriocin-processing
           peptidase domain at the N-terminus. Model TIGR03793
           describes a conserved propeptide region for this
           bacteriocin family, unusual because it shows obvious
           homology a region of the enzyme nitrile hydratase up to
           the classic Gly-Gly cleavage motif. This family is
           therefore predicted to be a subunit of a bacteriocin
           processing and export system characteristic to this
           system that we designate NHPM, Nitrile Hydratase
           Propeptide Microcin.
          Length = 710

 Score =  201 bits (513), Expect = 4e-52
 Identities = 144/517 (27%), Positives = 247/517 (47%), Gaps = 19/517 (3%)

Query: 15  LWGMFVLLLL-AVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSI 73
           L GM +  LL  V + L+ Y    L  ++ + M    +  I++L   FF  R  G+I + 
Sbjct: 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDI-AS 255

Query: 74  LVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR 133
            V+  +++   +   ++      +M      +M +    L+LI ++   + ++ +   SR
Sbjct: 256 RVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSR 315

Query: 134 KKTNT---LYADEKKLLNIFSDMIKSVMVLQSFNAGKEA---IRLYDIQSQKTYKGFLRS 187
           ++ +    L  D  KL  +    ++S+  L++  +G E+    R    Q+ K        
Sbjct: 316 RRVDANRRLQQDAGKLTGVAISGLQSIETLKA--SGLESDFFSRWAGYQA-KLLNAQQEL 372

Query: 188 ALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGF 247
            ++   +        S    ++ ++G   V   ++  G L  F      F   + + +GF
Sbjct: 373 GVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGF 432

Query: 248 IGGISQAIASLRRLRELIVCKLDI----SSPISSRTFPSPVL-GSVSFRSVSFVYPGKSK 302
            G + +    L RL +++   +D         ++ + PSP L G V  R+++F Y    +
Sbjct: 433 GGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLE 491

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
             +++N + T+QPG+ +ALVG SG+GK++I  L+   Y P SG +  +GI    +  E +
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551

Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
              +A V Q   +   +V DN+ +  P     ++  A   A  H+ I     GYD  L +
Sbjct: 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611

Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
           G  +LS GQ QR+ IARA++++  IL+LDE  SALD E E+ I   LR  RRG T I  +
Sbjct: 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR--RRGCTCIIVA 669

Query: 483 HRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
           HRLS I+D D + VL    +V++G HEEL    G YA
Sbjct: 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYA 706


>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 574

 Score =  193 bits (493), Expect = 9e-50
 Identities = 99/319 (31%), Positives = 172/319 (53%), Gaps = 24/319 (7%)

Query: 214 AHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGG----ISQAIASLRRLRELIVCKL 269
           A  V     P   +A FV   F   A+  + L  + G    + Q IAS RR+ E+   K 
Sbjct: 267 AGGVGGNAQPGALIALFV---FAALAAFEA-LMPVAGAFQHLGQVIASARRINEITEQKP 322

Query: 270 DISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGK 329
           +++ P +S    +    S++  +VSF YP    + +LK ++  ++ GE +AL+G +G GK
Sbjct: 323 EVTFPTTST--AAADQVSLTLNNVSFTYPD-QPQPVLKGLSLQIKAGEKVALLGRTGCGK 379

Query: 330 TSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP 389
           +++  L+ R +DP  G + + G  +   S   +R+ I+ V Q   + +A++ DN+ +  P
Sbjct: 380 STLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP 439

Query: 390 HATRKEIQNAAMLAQAHEFIGCLEN------GYDTILGDGAVHLSTGQIQRIAIARAILK 443
           +A+ + +    +L Q    +G LE       G +  LG+G   LS G+ +R+ IARA+L 
Sbjct: 440 NASDEAL--IEVLQQ----VG-LEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492

Query: 444 DSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503
           D+P+LLLDE    LD E E++I ++L E  + +T +  +HRL+ ++  D + V+ +  I+
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552

Query: 504 EKGVHEELLKKSGFYAHYH 522
           E+G H+ELL + G Y    
Sbjct: 553 EQGTHQELLAQQGRYYQLK 571


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score =  189 bits (482), Expect = 1e-48
 Identities = 133/511 (26%), Positives = 252/511 (49%), Gaps = 19/511 (3%)

Query: 18  MFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKD 77
           +   ++  + S ++ +   +LG+R+ + +    I  + +L  SFF++R  GEI S     
Sbjct: 203 IIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDA 262

Query: 78  TERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR--KK 135
           +  I A+    +S+ L  + +       +   ++ L L+ +  + ++ +++I F R   K
Sbjct: 263 SSIIDALASTILSLFL-DMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNK 321

Query: 136 TNTLYADEKKLLNIFSDMIKSVMVLQSFNA-GKEAIRLYDIQSQKTYKGFLRSALIRTCI 194
            N        +LN  S +I+ +  +++  +   EA R   I S+  +  +L  +      
Sbjct: 322 LNHDAMQANAVLN--SSIIEDLNGIETIKSLTSEAERYSKIDSE--FGDYLNKSFKYQKA 377

Query: 195 -----ACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIG 249
                A   +  +   + I++  GA+ V   ++  G+L  F      F   + + +    
Sbjct: 378 DQGQQAIKAVTKLILNVVILW-TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQP 436

Query: 250 GISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNV 309
            +  A  +  RL E+ +   +  +    RT  + + G +    VS+ Y   S   IL ++
Sbjct: 437 KLQAARVANNRLNEVYLVDSEFINK-KKRTELNNLNGDIVINDVSYSYGYGSN--ILSDI 493

Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369
           + T++      +VG SG+GK+++  L++ F+   SG + + G  L+ +    +R+FI ++
Sbjct: 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553

Query: 370 PQHPIMIAASVYDNIAIGC-PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428
           PQ P + + S+ +N+ +G   + ++ EI  A  +A+  + I  +  GY T L +    +S
Sbjct: 554 PQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613

Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAI 488
            GQ QRIA+ARA+L DS +L+LDE  S LD   E+KI   L   +  +T IF +HRLS  
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-KTIIFVAHRLSVA 672

Query: 489 QDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
           + +D + VL    I+E+G H+ELL ++GFYA
Sbjct: 673 KQSDKIIVLDHGKIIEQGSHDELLDRNGFYA 703


>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
           transporter, ATP-binding protein.  Members of this
           protein family are ABC transporter ATP-binding subunits,
           part of a three-gene putative bacteriocin transport
           operon. The other subunits include another ATP-binding
           subunit (TIGR03796), which has an N-terminal propeptide
           cleavage domain, and an HlyD homolog (TIGR03794). In a
           number of genomes, a conserved propeptide sequence with
           a classic Gly-Gly motif.
          Length = 686

 Score =  184 bits (470), Expect = 4e-47
 Identities = 130/487 (26%), Positives = 225/487 (46%), Gaps = 31/487 (6%)

Query: 46  MQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCM 105
           +Q  V  ++++L  SFF     G++ S       +I+ I+       L S +     + +
Sbjct: 211 LQAAVWDRLLRLPVSFFRQYSTGDLAS-RAMGISQIRRILSGSTLTTLLSGIFALLNLGL 269

Query: 106 MFVISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFN- 164
           MF  S KL+L+ V  + L  + +              E++LL +   +  S + +Q  N 
Sbjct: 270 MFYYSWKLALVAV-ALALVAIAVTLVLGLLQVRK---ERRLLELSGKI--SGLTVQLING 323

Query: 165 ------AGKEAIRLYDI-----QSQKTYKGFLRSALIRTCIACF-VIFFVSCGIFIVFLI 212
                 AG E            + +K     L +  I   +  F  +  V      +F  
Sbjct: 324 ISKLRVAGAENRAFARWAKLFSRQRKLE---LSAQRIENLLTVFNAVLPVLTSA-ALFAA 379

Query: 213 GAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDIS 272
               +  A +  G    F      F  ++      +  I   I    R + ++    ++ 
Sbjct: 380 AISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439

Query: 273 SPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSI 332
               ++T P  + G++    V+F Y       IL +V+  ++PGE +A+VG SG+GK+++
Sbjct: 440 E---AKTDPGKLSGAIEVDRVTFRY-RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTL 495

Query: 333 FSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHAT 392
             L+L F  P SGSV  +G DL  L ++ +RR +  V Q+  +++ S+++NIA G P  T
Sbjct: 496 LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LT 554

Query: 393 RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
             E   AA +A   E I  +  G  T++ +G   LS GQ QR+ IARA+++   ILL DE
Sbjct: 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614

Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512
             SALD   +  + + L   +  R  I  +HRLS I++AD ++VL    +V++G ++EL+
Sbjct: 615 ATSALDNRTQAIVSESLERLKVTRIVI--AHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672

Query: 513 KKSGFYA 519
            + G +A
Sbjct: 673 AREGLFA 679


>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
           transporter, PrtD family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 544

 Score =  181 bits (461), Expect = 4e-46
 Identities = 97/266 (36%), Positives = 148/266 (55%), Gaps = 8/266 (3%)

Query: 251 ISQAIASLRRLRELIVCKLDISSPISSRTFPSP-VLGSVSFRSVSFVYPGKSKRSILKNV 309
            S A  + +RL EL+      + P      P P   G +S  +V+ V PG  K+  L+ +
Sbjct: 284 FSGARQAYKRLNELL-----ANYPSRDPAMPLPEPEGHLSVENVTIVPPG-GKKPTLRGI 337

Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369
           +F +Q GE +A++G SG+GK+++  LI+  + P SGSV ++G DL+    E   + I ++
Sbjct: 338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397

Query: 370 PQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLST 429
           PQ   +   +V +NIA    +A  ++I  AA LA  HE I  L +GYDT++G G   LS 
Sbjct: 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG 457

Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLSAI 488
           GQ QRIA+ARA+  D  +++LDE  S LD E EQ +   ++  + RG T +  +HR S +
Sbjct: 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL 517

Query: 489 QDADMVFVLHDQVIVEKGVHEELLKK 514
              D + VL D  I   G  +E+L K
Sbjct: 518 GCVDKILVLQDGRIARFGERDEVLAK 543


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score =  179 bits (455), Expect = 2e-45
 Identities = 144/529 (27%), Positives = 255/529 (48%), Gaps = 63/529 (11%)

Query: 21  LLLLAVASSLRYYCATMLGERMILFMQR---DVIAKIIKLSPSFFNSRGHGEIFSILVKD 77
           + L  +A+ L Y  + +     +  +Q+   DV+   ++   S F+++  G++ S +  D
Sbjct: 72  VGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTND 131

Query: 78  TERIKAIIGIGMSIVLRSLLMGFGAMCM-MFVISIKLSLIVVSIVTLFLMVMIKFSRKKT 136
           TE I+ +    ++ VLRS  +  GAM + MF +  +++L+ + I    L+VM+ + R  T
Sbjct: 132 TEVIRDLYVTVVATVLRSAAL-IGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYST 190

Query: 137 NTLYADEKKLLNI---FSDMIKSVMVLQSFNA----GK---EAIRLYDIQSQKTYK--GF 184
             +      L +I   F+++I  + V+Q F      G+   EA R + +   +T +  GF
Sbjct: 191 PIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250

Query: 185 LRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFF------ 238
           L   L+    A      + CG+ ++F              G +   V+YAFI +      
Sbjct: 251 LLRPLLSLFSA-----LILCGLLMLFGFS---------ASGTIEVGVLYAFISYLGRLNE 296

Query: 239 -----ASIRSCLGFIGGISQAIASLRRLRELIVCKL----DISSPISSRTFPSPVLGSVS 289
                 + +S L       QA+ +  R+ EL+        +   P+ S        G + 
Sbjct: 297 PLIELTTQQSML------QQAVVAGERVFELMDGPRQQYGNDDRPLQS--------GRID 342

Query: 290 FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349
             +VSF Y  +    +L+N+N +V     +ALVG +G+GK+++ SL++ +Y    G + +
Sbjct: 343 IDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400

Query: 350 EGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFI 409
           +G  L  LS   +R+ +A V Q P+++A +   N+ +G    + +++  A    Q  E  
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-RDISEEQVWQALETVQLAELA 459

Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
             L +G  T LG+   +LS GQ Q +A+AR +++   IL+LDE  + +D   EQ I + L
Sbjct: 460 RSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519

Query: 470 REQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFY 518
              R   T +  +HRLS I +AD + VLH    VE+G H++LL   G Y
Sbjct: 520 AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRY 568


>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit.  The
           gene pair cydCD encodes an ABC-family transporter in
           which each gene contains an N-terminal membrane-spanning
           domain (pfam00664) and a C-terminal ATP-binding domain
           (pfam00005). In E. coli these genes were discovered as
           mutants which caused the terminal heme-copper oxidase
           complex cytochrome bd to fail to assemble. Recent work
           has shown that the transporter is involved in export of
           redox-active thiol compounds such as cysteine and
           glutathione. The linkage to assembly of the cytochrome
           bd complex is further supported by the conserved operon
           structure found outside the gammaproteobacteria
           (cydABCD) containing both the transporter and oxidase
           genes components. The genes used as the seed members for
           this model are all either found in the
           gammproteobacterial context or the CydABCD context. All
           members of this family scoring above trusted at the time
           of its creation were from genomes which encode a
           cytochrome bd complex.
          Length = 529

 Score =  172 bits (439), Expect = 1e-43
 Identities = 109/454 (24%), Positives = 204/454 (44%), Gaps = 16/454 (3%)

Query: 41  RMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGF 100
           R +  ++  V  ++ +L+ +       G++   L  D + ++ +    +  ++ +L++G 
Sbjct: 83  RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142

Query: 101 GAMCMMFVISIKLSLIVVSIVTLFLMVMIKFS----RKKTNTLYADEKKLLNIFSDMIKS 156
            A+  + ++S+  +L++ + + L   V    S    R     L     +L    +D +  
Sbjct: 143 AAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDG 202

Query: 157 VMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHY 216
              L ++ A   A+   +   ++      R+A      A   +      +      G   
Sbjct: 203 AADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPA 262

Query: 217 VATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPIS 276
           VA   +    LA  V+     F +          +++  A+  R+ E+         P  
Sbjct: 263 VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEV----TGAKGPRP 318

Query: 277 SRTFPSP---VLGSVS--FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTS 331
               P+     LG  +   R +SF YPG     +L  V+  + PGE +A++G SG+GK++
Sbjct: 319 EGVVPAAGALGLGKPTLELRDLSFGYPGSPP--VLDGVSLDLPPGERVAILGPSGSGKST 376

Query: 332 IFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA 391
           +  L+    DP  G V ++G+ +  L  +E+RR I+   Q   +   +V DN+ +G P A
Sbjct: 377 LLMLLTGLLDPLQGEVTLDGVSVSSLQ-DELRRRISVFAQDAHLFDTTVRDNLRLGRPDA 435

Query: 392 TRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLD 451
           T +E+  A       +++  L +G DT+LG+G   LS G+ QR+A+ARA+L D+PILLLD
Sbjct: 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 495

Query: 452 EMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485
           E    LD   E ++ + L     G+T +  +H L
Sbjct: 496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529


>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
            (MRP).  This model describes multi drug
            resistance-associated protein (MRP) in eukaryotes. The
            multidrug resistance-associated protein is an integral
            membrane protein that causes multidrug resistance when
            overexpressed in mammalian cells. It belongs to ABC
            transporter superfamily. The protein topology and
            function was experimentally demonstrated by epitope
            tagging and immunofluorescence. Insertion of tags in the
            critical regions associated with drug efflux, abrogated
            its function. The C-terminal domain seem to highly
            conserved.
          Length = 1522

 Score =  140 bits (355), Expect = 7e-34
 Identities = 111/484 (22%), Positives = 225/484 (46%), Gaps = 18/484 (3%)

Query: 46   MQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCM 105
            + +D++   ++   SFF     G + +   K+ + + ++I   + + + SL    GA  +
Sbjct: 1040 LHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA-LI 1098

Query: 106  MFVISIKLSLIVVSIVTLFLMVMIKF----SRKKTNTLYADEKKLLNIFSDMIKSVMVLQ 161
            + +++  ++ +++  + L    + +F    SR+           + + F++ +  V V++
Sbjct: 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIR 1158

Query: 162  SFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAE 221
            +F   +  I   D++  +  K +  S +    +A  +    +C +    L     ++   
Sbjct: 1159 AFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV--ISRHS 1216

Query: 222  MPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFP 281
            +  G +   V Y+      +   +     +   I ++ RL+E    + +    I     P
Sbjct: 1217 LSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPP 1276

Query: 282  S--PVLGSVSFRSVSFVY-PGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338
            S  P  G V FR+    Y        +L+++N T+  GE + +VG +GAGK+S+   + R
Sbjct: 1277 SGWPPRGRVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334

Query: 339  FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TRKEI 396
              +   G + I+G+++  + L ++R  I  +PQ P++ + S+  N+    P +  + +E+
Sbjct: 1335 INESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLD---PFSQYSDEEV 1391

Query: 397  QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
              A  LA    F+  L +  D    +G  +LS GQ Q + +ARA+L+ + IL+LDE  +A
Sbjct: 1392 WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAA 1451

Query: 457  LDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516
            +D+E +  I   +R Q    T +  +HRL+ I D   V VL    + E G    LL++ G
Sbjct: 1452 VDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG 1511

Query: 517  -FYA 519
             FY+
Sbjct: 1512 IFYS 1515



 Score =  109 bits (274), Expect = 2e-24
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 26/281 (9%)

Query: 248 IGGISQAIASLRRLRELIVCK-LDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSIL 306
           I  I QA  SL+RLR  +  + L+  S I  RT       S++  + +F +  +     L
Sbjct: 597 ISSIVQASVSLKRLRIFLSHEELEPDS-IERRTIKPGEGNSITVHNATFTW-ARDLPPTL 654

Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFI 366
             + F++  G  +A+VG  G GK+S+ S +L   D   G V ++G              +
Sbjct: 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-------------V 701

Query: 367 AWVPQHPIMIAASVYDNIAIGC---PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
           A+VPQ   +   S+ +NI  G        ++ ++  A+L      +  L +G  T +G+ 
Sbjct: 702 AYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD----LEILPSGDRTEIGEK 757

Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQ--RRGRTTIF 480
            V+LS GQ QR+++ARA+  ++ I L D+  SA+D    + I+  V+  +   + +T I 
Sbjct: 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL 817

Query: 481 ASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHY 521
            +H +S +   D++ V+    I E G ++ELL++ G +A +
Sbjct: 818 VTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEF 858


>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
          Length = 1466

 Score =  120 bits (303), Expect = 7e-28
 Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 8/186 (4%)

Query: 344  SGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403
            SG + ++G+D+   +L+++R   + V Q P++   S+Y+NI  G   ATR++++ A   A
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335

Query: 404  QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
               EFI  L N YDT +G     LS GQ QRIAIARA+L++  ILLLDE  S+LD  +E+
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395

Query: 464  KIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHD-----QVIVEKGVHEELLK-KS 515
             I K + +   +  +T I  +HR+++I+ +D + V ++       +   G HEELL  + 
Sbjct: 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455

Query: 516  GFYAHY 521
            G Y  Y
Sbjct: 1456 GVYKKY 1461



 Score = 82.8 bits (204), Expect = 2e-16
 Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 2/108 (1%)

Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454
           E+ + +     H+F+  L + Y+T++G  A  LS GQ QRI+IARAI+++  IL+LDE  
Sbjct: 548 EVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607

Query: 455 SALDIENEQKIWKVLREQR--RGRTTIFASHRLSAIQDADMVFVLHDQ 500
           S+LD ++E  + K +   +    R TI  +HRLS I+ A+ +FVL ++
Sbjct: 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655



 Score = 72.0 bits (176), Expect = 3e-13
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 283 PVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP 342
             +  + F++V F Y  +    I K++NFT+  G+T A VG+SG GK++I  LI R YDP
Sbjct: 378 KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437

Query: 343 CSGSVEI-EGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNI 384
             G + I +  +L+ ++L+  R  I  V Q P++ + S+ +NI
Sbjct: 438 TEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNI 480



 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 89/368 (24%), Positives = 170/368 (46%), Gaps = 55/368 (14%)

Query: 12   SLYLWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGH--GE 69
            SLY+  + + + + ++ +L+ Y   ++GE++   M+R +   I+    SFF+   H  G 
Sbjct: 869  SLYI--LVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926

Query: 70   IFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSL----IVVSIVT-LF 124
            + + + +D   +K   G+  +IV+      F    ++F++S+ +S     IV +++T  +
Sbjct: 927  LSAHINRDVHLLKT--GLVNNIVI------FTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978

Query: 125  LMVMIKFSRKKTNTLYAD-EKKLLN-------------IFSDMIKSVMVLQSF------- 163
             + M  F+ +   T   D EKK +N             IF D   S ++ ++F       
Sbjct: 979  FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKD--PSFLIQEAFYNMNTVI 1036

Query: 164  NAGKEAIRLYDIQSQKTY--KGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAE 221
              G E      I+    Y  KG  R  L+ + +  F     S  +FI     A++  +  
Sbjct: 1037 IYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFS---QSAQLFINSF--AYWFGSFL 1091

Query: 222  MPRGKLA--EFV--VYAFIFFASIRSCLGFIGGISQ-AIASLRRLRELIVCK--LDISSP 274
            + RG +   +F+  ++ F+F  S    L  + G S+ A  S  +   LI+ K  +D+   
Sbjct: 1092 IRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDN 1151

Query: 275  ISSRTFPSPVL-GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIF 333
               R      + G +    V+F Y  +    I K++ F+    +T A+VG++G+GK+++ 
Sbjct: 1152 GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM 1211

Query: 334  SLILRFYD 341
            SL++RFYD
Sbjct: 1212 SLLMRFYD 1219


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score =  120 bits (302), Expect = 1e-27
 Identities = 80/267 (29%), Positives = 144/267 (53%), Gaps = 20/267 (7%)

Query: 251 ISQAI---ASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILK 307
           I+QA+    SL+RL EL++ +  +  P        P L ++S ++  F +  K++R  L 
Sbjct: 578 ITQAVNANVSLKRLEELLLAEERVLLPNPPL---EPGLPAISIKNGYFSWDSKAERPTLS 634

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIA 367
           N+N  V  G  +A+VG +G GKTS+ S +L    P S +  +            IR  +A
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVA 682

Query: 368 WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHL 427
           +VPQ   +  A+V DNI  G P    +  +   + A  H+ +  L  G  T +G+  V++
Sbjct: 683 YVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHD-LDLLPGGDLTEIGERGVNI 741

Query: 428 STGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQRRGRTTIFASHRLS 486
           S GQ QR+++ARA+  +S + + D+  SALD    ++++ K ++++ RG+T +  +++L 
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLH 801

Query: 487 AIQDADMVFVLHDQVIVEKGVHEELLK 513
            +   D + ++H+ +I E+G +EEL  
Sbjct: 802 FLSQVDRIILVHEGMIKEEGTYEELSN 828



 Score =  117 bits (296), Expect = 5e-27
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 14/240 (5%)

Query: 283  PVLGSVSFRSVSFVYPGKSKRS----ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338
            P  GS+ F  V   Y     R     +L  ++F + P E + +VG +GAGK+S+ + + R
Sbjct: 1233 PSSGSIKFEDVVLRY-----RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR 1287

Query: 339  FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQN 398
              +   G + I+G D+    L ++R+ +  +PQ P++ + +V  N+    P     +   
Sbjct: 1288 IVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLD---PFNEHNDADL 1344

Query: 399  AAMLAQAH--EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
               L +AH  + I     G D  + +   + S GQ Q +++ARA+L+ S IL+LDE  +A
Sbjct: 1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAA 1404

Query: 457  LDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516
            +D+  +  I K +RE+ +  T +  +HRL+ I D D + VL    +VE    E LL   G
Sbjct: 1405 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464


>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score =  119 bits (300), Expect = 2e-27
 Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 10/248 (4%)

Query: 283  PVLGSVSFRSVSFVY-PGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341
            P  GS+ F  V   Y PG     +L  ++F V P E + +VG +GAGK+S+ + + R  +
Sbjct: 1230 PSRGSIKFEDVHLRYRPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE 1287

Query: 342  PCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM 401
               G + I+  D+    L ++RR ++ +PQ P++ + +V  NI    P +   +      
Sbjct: 1288 LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID---PFSEHNDADLWEA 1344

Query: 402  LAQAH--EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
            L +AH  + I     G D  + +G  + S GQ Q +++ARA+L+ S IL+LDE  +++D+
Sbjct: 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV 1404

Query: 460  ENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK--SGF 517
              +  I + +RE+ +  T +  +HRL+ I D D + VL    ++E    +ELL +  S F
Sbjct: 1405 RTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAF 1464

Query: 518  YAHYHILG 525
            +   H  G
Sbjct: 1465 FRMVHSTG 1472



 Score =  103 bits (259), Expect = 1e-22
 Identities = 119/537 (22%), Positives = 237/537 (44%), Gaps = 76/537 (14%)

Query: 13  LYLWGMFVLLLLAVASSLRYYCATM-LGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIF 71
           +Y + +F  +   V    +Y+     +G R+   +   +  K ++L+     +   G++ 
Sbjct: 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVT 401

Query: 72  SILVKDTERIKAI-----------IGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI 120
           +++  D   ++ I             I +S+VL    +G        V S+  SLI+  +
Sbjct: 402 NMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLG--------VASLFGSLILFLL 453

Query: 121 VTLFLMVMIKFSRKKTNTLYADEKKLLNIFS-----DMIKSVMVLQSFNAGKEAIRLYDI 175
           + L  +++ K  +     L   +K++  I       D +K     +SF +  + IR  ++
Sbjct: 454 IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEEL 513

Query: 176 QSQKTYKGFLRSALIRTCIACF-------VIFFVSCGIFIVFLIGAHYVATAEMPRGKLA 228
                   + R A + +    F       V+  VS G+F+  L+G           G L 
Sbjct: 514 S-------WFRKAQLLSAFNSFILNSIPVVVTLVSFGVFV--LLG-----------GDLT 553

Query: 229 EFVVY-AFIFFASIRSCLGFIGG-ISQAI---ASLRRLRELIVCKLDISSPISSRTFPSP 283
               + +   FA +RS L  +   +SQ +    SL+R+ EL++ +  I +         P
Sbjct: 554 PARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPL---QP 610

Query: 284 VLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC 343
              ++S ++  F +  K+ +  L ++N  +  G  +A+VG +G GKTS+ S +L      
Sbjct: 611 GAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670

Query: 344 SGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403
             S  +            IR  +A+VPQ   +  A+V +NI  G    + +  +   + A
Sbjct: 671 ETSSVV------------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTA 718

Query: 404 QAHEFIGCLENGYD-TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462
             H+    L  G D T +G+  V++S GQ QR+++ARA+  +S I + D+  SALD    
Sbjct: 719 LQHDLD--LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776

Query: 463 QKIW-KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFY 518
            +++   ++++ +G+T +  +++L  +   D + ++ + +I E+G   EL K    +
Sbjct: 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLF 833


>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
           transporter, lactococcin 972 group.  A gene pair with a
           fairly wide distribution consists of a polypeptide
           related to the lactococcin 972 (see TIGR01653) and
           multiple-membrane-spanning putative immunity protein
           (see TIGR01654). This model represents a small clade
           within the ABC transporters that regularly are found
           adjacent to these bacteriocin system gene pairs and are
           likely serve as export proteins.
          Length = 206

 Score =  111 bits (280), Expect = 5e-25
 Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 13/199 (6%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
           + IL ++N T++ G+  A++G+SG+GK+++ ++I       SG V + G +   L+ ++ 
Sbjct: 11  KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKA 70

Query: 363 RRF----IAWVPQHPIMI-AASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417
            +F    + ++ Q+  +I   +V +N+ +G  +    + +      +A E +G L     
Sbjct: 71  SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG-LNLKLK 129

Query: 418 TILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRG 475
                  ++ LS G+ QR+A+ARAILKD P++L DE   +LD +N  ++  +L E    G
Sbjct: 130 QK-----IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184

Query: 476 RTTIFASHRLSAIQDADMV 494
           +T I  +H     + AD V
Sbjct: 185 KTIIIVTHDPEVAKQADRV 203


>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE.  This
           model describes FtsE, a member of the ABC transporter
           ATP-binding protein family. This protein, and its
           permease partner FtsX, localize to the division site. In
           a number of species, the ftsEX gene pair is located next
           to FtsY, the signal recognition particle-docking
           protein.
          Length = 214

 Score =  111 bits (280), Expect = 5e-25
 Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 24/213 (11%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + F +VS  YPG    + L +V+  ++ GE + L G SGAGKT++  L+     P  G V
Sbjct: 2   IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

Query: 348 EIEGIDLRLLSLEEI---RRFIAWVPQ-HPIMIAASVYDNIAIG------CPHATRKEIQ 397
            I G D+  L   ++   RR I  V Q   ++   +VY+N+A+            ++ + 
Sbjct: 60  RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119

Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
            A         +G LE+  D         LS G+ QR+AIARAI+   P+LL DE    L
Sbjct: 120 AAL------RQVG-LEHKADAF----PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168

Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQ 489
           D +  ++I  +L+   +RG T I A+H LS + 
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201


>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
           Family protein. 
          Length = 216

 Score =  108 bits (271), Expect = 4e-24
 Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 21/213 (9%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + F  VS  YPG   +  L N+NF +  GE + LVG SGAGK++   LIL    P  G +
Sbjct: 2   IRFEQVSKAYPG-GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60

Query: 348 EIEGIDLRLLSLEEI---RRFIAWVPQ-HPIMIAASVYDNIA-----IGCPHATRKEIQN 398
              G DL  L   EI   RR I  V Q H ++   +VYDN+A     IG P    ++   
Sbjct: 61  RFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVP---PRDANE 117

Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
               A   E +G     +        + LS G+ QR+AIARAI+   P+LL DE    LD
Sbjct: 118 RVSAAL--EKVGLEGKAHAL-----PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLD 170

Query: 459 IENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD 490
            E  + I ++  E  RRG T + A+H ++ ++ 
Sbjct: 171 PELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203


>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
           PQQ-dependent alcohol dehydrogenase system.  Members of
           this protein family are the ATP-binding subunit of an
           ABC transporter system that is associated with PQQ
           biosynthesis and PQQ-dependent alcohol dehydrogenases.
           While this family shows homology to several efflux ABC
           transporter subunits, the presence of a periplasmic
           substrate-binding protein and association with systems
           for catabolism of alcohols suggests a role in import
           rather than detoxification.
          Length = 236

 Score =  105 bits (263), Expect = 4e-23
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 12/233 (5%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
           ++    +SF Y     R  L +V+FTV+PGE +AL+G +GAGK+++FSL+ R Y    G 
Sbjct: 1   ALEVAGLSFAY---GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57

Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIM-IAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
           + + G DLR      + R +  V Q P + +  SV  N+     HA    +  A    + 
Sbjct: 58  ISVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARERI 113

Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
              +  L  G      D    L+ G  +R+ IARA+L    +LLLDE    LD  +   I
Sbjct: 114 AALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171

Query: 466 WKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516
              +R   + +G + ++A+H +  I+  D + VLH   ++  G   EL    G
Sbjct: 172 VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALG 224


>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score =  101 bits (254), Expect = 4e-22
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 24/237 (10%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           +    +SF YP  +  + LK+V+F+V  GE +A+VG +G+GK+++  L+     P +G++
Sbjct: 6   IRVEHISFRYPDAATYA-LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64

Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIA-----IGCPHATRKE-IQNA 399
            + G+ L   ++ ++RR +  V Q+P    + A+V D++A     IG P     E +  A
Sbjct: 65  TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124

Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALD 458
                  +F           L      LS GQ QR+AIA  +L   P I++LDE  S LD
Sbjct: 125 LRQVGMEDF-----------LNREPHRLSGGQKQRVAIA-GVLALQPDIIILDEATSMLD 172

Query: 459 IENEQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLK 513
               +++ + +R+  +++G T +  +H L     AD V V++   I+E+G  EE+ K
Sbjct: 173 PRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229


>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score =  100 bits (252), Expect = 7e-22
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 14/232 (6%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           +   +VSF YP  S+ + LKNV+F +  GE +A++G +G+GK++I  ++     P SG +
Sbjct: 8   IKVENVSFSYP-NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHA--TRKEIQNAAMLA 403
           +I+GI +   +L+EIR+ I  + Q+P    I A+V D+IA G  +     K+++   +  
Sbjct: 67  KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK-DIIDD 125

Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
            A +       G +  L     +LS GQ QR+AIA  +  +  I++ DE  S LD + ++
Sbjct: 126 LAKKV------GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179

Query: 464 KIWKVLREQR--RGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLK 513
           +I K++ + R  R +T I  +H +     AD V V  +  ++ +G  +E+L 
Sbjct: 180 EIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231


>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
           protein; Reviewed.
          Length = 375

 Score =  100 bits (251), Expect = 9e-22
 Identities = 80/247 (32%), Positives = 118/247 (47%), Gaps = 50/247 (20%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           V  R +S  + GK    ++ N++ T+  GE + L+G SG GKT++  LI  F  P SG +
Sbjct: 15  VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71

Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQH----PIMIAASVYDNIAIG-----CPHATRKEIQN 398
            ++G D+  +  E   R +  V Q     P M   +V++N+A G      P A   EI  
Sbjct: 72  MLDGQDITHVPAE--NRHVNTVFQSYALFPHM---TVFENVAFGLRMQKTPAA---EITP 123

Query: 399 AAM--LAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGS 455
             M  L         LE            H LS GQ QR+AIARA++    +LLLDE  S
Sbjct: 124 RVMEALRMVQ-----LEE-----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173

Query: 456 ALD------IENEQKIWKVLREQRR-GRTTIFASH-RLSAIQDADMVFVLHDQVIVEKG- 506
           ALD      ++NE K       QR+ G T +F +H +  A+  +D + V+ D  I + G 
Sbjct: 174 ALDYKLRKQMQNELK-----ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228

Query: 507 ---VHEE 510
              ++EE
Sbjct: 229 PREIYEE 235


>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
           Provisional.
          Length = 343

 Score = 99.9 bits (250), Expect = 2e-21
 Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 29/233 (12%)

Query: 290 FRSVSFVYPGKSKR-SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
            +++S V+P   +    L NV+  +  GE   ++G SGAGK+++   I     P SG V 
Sbjct: 4   LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63

Query: 349 IEGIDLRLLS---LEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCP----HATRKEIQNAA 400
           ++G DL  LS   L + RR I  + QH  ++++ +V+DN+A+  P       + EI+  A
Sbjct: 64  VDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL--PLELAGTPKAEIK--A 119

Query: 401 MLAQAHEFIGCLENGYDTILGDGA----VHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
            + +  E +G         L D A      LS GQ QR+AIARA+  +  +LL DE  SA
Sbjct: 120 RVTELLELVG---------LSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 457 LDIENEQKIWKVLRE-QRR-GRTTIFASHRLSAI-QDADMVFVLHDQVIVEKG 506
           LD    + I ++L++  R  G T +  +H +  + +  D V V+    +VE+G
Sbjct: 171 LDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223


>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
           protein.  Phosphonates are a class of
           phosphorus-containing organic compound with a stable
           direct C-P bond rather than a C-O-P linkage. A number of
           bacterial species have operons, typically about 14 genes
           in size, with genes for ATP-dependent transport of
           phosphonates, degradation, and regulation of the
           expression of the system. Members of this protein family
           are the ATP-binding cassette component of tripartite ABC
           transporters of phosphonates.
          Length = 243

 Score = 97.8 bits (244), Expect = 6e-21
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 28/240 (11%)

Query: 290 FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349
             ++S VYP   +   LKN+N  + PGE +A++G SGAGK+++   I R  +P SGS+ +
Sbjct: 4   VENLSKVYPNGKQ--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61

Query: 350 EGIDLRLLS---LEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHA-----------TRK 394
           EG D+  L    L ++RR I  + QH  +I   +V +N+  G               + +
Sbjct: 62  EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121

Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454
           + + A     A E +G  +  Y       A  LS GQ QR+AIARA+ +   ++L DE  
Sbjct: 122 DKERA---LSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLILADEPI 173

Query: 455 SALDIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
           ++LD +  +++   L+   +  G T I   H++  A + AD +  L    IV  G   EL
Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233


>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 282

 Score = 97.6 bits (243), Expect = 7e-21
 Identities = 76/237 (32%), Positives = 128/237 (54%), Gaps = 19/237 (8%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI---LRFYDPCS 344
           V F+ VSF YP  SK+  L +++F++  G   AL+G +G+GK++I  LI   L   D  +
Sbjct: 6   VEFKHVSFTYP-DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64

Query: 345 GSVEIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPH--ATRKEIQNAA 400
             + ++GI L   ++ +IR  +  V Q+P    + A+V D++A G  +    R E+    
Sbjct: 65  SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-- 122

Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALDI 459
           ++      +G L    D I  + A +LS GQ QR+AIA  IL   P I++LDE  S LD 
Sbjct: 123 IVRDVLADVGML----DYIDSEPA-NLSGGQKQRVAIA-GILAVEPKIIILDESTSMLDP 176

Query: 460 ENEQKIWKVLRE-QRRGRTTIFA-SHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514
             +++I K++R+ +++   T+ + +H +     AD V VL D  ++ +G   E+  K
Sbjct: 177 AGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233


>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 241

 Score = 97.6 bits (243), Expect = 8e-21
 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 14/222 (6%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + F+ VS+       + ILK+++   + G    +VG SGAGK+++  LI R  DP  GS+
Sbjct: 4   IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60

Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
            I+G+D++ + + ++RR I  V Q P +   +V DNI  G      K +     L     
Sbjct: 61  LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYL----S 116

Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
            +G L   Y T       +LS G+ QR++IAR +  +  +LLLDE  SALD  + + I +
Sbjct: 117 IVG-LNKEYATRDVK---NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172

Query: 468 VLRE--QRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKG 506
           ++ +   +   T I+ +H +  A +  D    L+  ++VE  
Sbjct: 173 LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214


>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
            regulator (CFTR).  The model describes the cystis
            fibrosis transmembrane conductor regulator (CFTR) in
            eukaryotes. The principal role of this protein is
            chloride ion conductance. The protein is predicted to
            consist of 12 transmembrane domains. Mutations or lesions
            in the genetic loci have been linked to the aetiology of
            asthma, bronchiectasis, chronic obstructive pulmonary
            disease etc. Disease-causing mutations have been studied
            by 36Cl efflux assays in vitro cell cultures and
            electrophysiology, all of which point to the impairment
            of chloride channel stability and not the biosynthetic
            processing per se.
          Length = 1490

 Score = 96.5 bits (240), Expect = 1e-20
 Identities = 99/455 (21%), Positives = 202/455 (44%), Gaps = 39/455 (8%)

Query: 60   SFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVS 119
            +  N+   G I +   KD   I  ++ + +   ++  L+  GA+ ++ V+   + +  + 
Sbjct: 974  AVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033

Query: 120  IVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNA-GKEA---IRLYDI 175
            +  +F+M+   F R        + +    IFS +I S+  L +  A G+++      +  
Sbjct: 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093

Query: 176  QSQKTYKGFLRSALIR----TCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFV 231
             +  T   FL  + +R         FV FF++   FI        + T +   G++   +
Sbjct: 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAV-TFIA-------IGTNQDGEGEVGIIL 1145

Query: 232  VYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISS--RTFPSPVL---- 285
              A    ++++  +     +   + S+ R+ + I    +   P     +   S VL    
Sbjct: 1146 TLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIEN 1205

Query: 286  ----------GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL 335
                      G +  + ++  Y  ++ R++L++++F+V+ G+ + L+G +G+GK+++ S 
Sbjct: 1206 PHAQKCWPSGGQMDVQGLTAKYT-EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264

Query: 336  ILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TR 393
            +LR      G ++I+G+    ++L+  R+    +PQ   + + +   N+    P+   + 
Sbjct: 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD---PYEQWSD 1320

Query: 394  KEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453
            +EI   A        I    +  D +L DG   LS G  Q + +AR+IL  + ILLLDE 
Sbjct: 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380

Query: 454  GSALDIENEQKIWKVLREQRRGRTTIFASHRLSAI 488
             + LD    Q I K L++     T I + HR+ A+
Sbjct: 1381 SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415



 Score = 94.2 bits (234), Expect = 8e-20
 Identities = 60/210 (28%), Positives = 110/210 (52%), Gaps = 19/210 (9%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
           +LKN++F ++ G+ +A+ G +G+GK+S+  +I+   +P  G ++  G             
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487

Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAML--AQAHEFIGCLENGYDTILGD 422
            I++ PQ   ++  ++ DNI  G    +  E +  +++   Q  E I        T+LG+
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544

Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQRRGRTTIFA 481
           G + LS GQ  RI++ARA+ KD+ + LLD   + LD+  E++I+   L +    +T I  
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604

Query: 482 SHRLSAIQDADMVFVLHDQVIVEKGVHEEL 511
           + +L  ++ AD + +LH+ V    G   EL
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSEL 634


>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
           YbbL; Provisional.
          Length = 225

 Score = 95.9 bits (239), Expect = 3e-20
 Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
             IL N++F+++ GE   + G SG GK+++  ++     P SG++  EG D+  L  E  
Sbjct: 20  AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79

Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKE-IQNAAMLAQAHEFIGCLENGYDTILG 421
           R+ +++  Q P +   +VYDN+    P   R +    A  L     F        DTIL 
Sbjct: 80  RQQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFLDDLERF-----ALPDTILT 132

Query: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK----IWKVLREQRRGRT 477
                LS G+ QRI++ R +     +LLLDE+ SALD  N+      I + +REQ     
Sbjct: 133 KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ--NIA 190

Query: 478 TIFASHRLSAIQDADMVFVL 497
            ++ +H    I  AD V  L
Sbjct: 191 VLWVTHDKDEINHADKVITL 210


>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding protein
           of a family of ABC transporters for inorganic phosphate.
           In the model species Escherichia coli, a constitutive
           transporter for inorganic phosphate, with low affinity,
           is also present. The high affinity transporter that
           includes this polypeptide is induced when extracellular
           phosphate concentrations are low. The proteins most
           similar to the members of this family but not included
           appear to be amino acid transporters.
          Length = 247

 Score = 92.7 bits (231), Expect = 2e-19
 Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 20/223 (8%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358
           LKN+N  +   +  AL+G SG GK+++   + R  D        G V  +G D+  + + 
Sbjct: 17  LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76

Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA----TRKEIQNAA--MLAQAHEFIGCL 412
           + E+RR +  V Q P     S+YDNIA G P       +KE+       L +A      L
Sbjct: 77  VVELRRRVGMVFQKPNPFPMSIYDNIAYG-PRLHGIKDKKELDEIVEESLKKA-----AL 130

Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
            +     L D A+ LS GQ QR+ IARA+  +  +LLLDE  SALD     KI ++++E 
Sbjct: 131 WDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190

Query: 473 RRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK 514
           ++  T +  +H +  A + +D     +D  +VE G  E++   
Sbjct: 191 KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233


>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
           This model describes the energy-transducing ATPase
           subunit ThiQ of the ThiBPQ thiamine (and thiamine
           pyrophosphate) ABC transporter in several
           Proteobacteria. This protein is found so far only in
           Proteobacteria, and is found in complete genomes only if
           the ThiB and ThiP subunits are also found.
          Length = 213

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%)

Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369
           +  V  GE +A++G SGAGK+++ +LI  F +P SGS+++       L+  + R      
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQ-RPVSMLF 76

Query: 370 PQHPIMIAASVYDNIAIGC-PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428
            ++ +    +V  NI +G  P       Q   ++  A +       G    L      LS
Sbjct: 77  QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQV------GIADYLDRLPEQLS 130

Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLS 486
            GQ QR+A+AR +++ +PILLLDE  SALD    +++  ++++    R RT +  +H LS
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190

Query: 487 -AIQDADMVFVLHD 499
            A   A  + V+  
Sbjct: 191 DARAIASQIAVVSQ 204


>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
          Length = 402

 Score = 91.8 bits (228), Expect = 3e-19
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 13/231 (5%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
            VS  SV F        ++L  V+ +V+ G  + LVG +GAGKT++   I     P +G+
Sbjct: 5   DVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT 59

Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQH-PIMIAASVYDNIAIG-CPHATRKEIQNAAMLAQ 404
           V + G D+  LS     R +A VPQ   +     V   + +G  PH +R +       A 
Sbjct: 60  VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA 119

Query: 405 AHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
                  +E        D  V  LS G+ QR+ +ARA+ + +P+LLLDE  ++LDI ++ 
Sbjct: 120 VER---AMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176

Query: 464 KIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
           +  +++R     G+T + A H L  A +  D + +L D  +   G   ++L
Sbjct: 177 RTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227


>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
          Length = 1560

 Score = 91.4 bits (227), Expect = 6e-19
 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 10/244 (4%)

Query: 272  SSPISSRTFPSPVL-GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKT 330
            +SP S    P PV  GS+ F  V   Y  +    +L+ V+F + P E + +VG +G+GK+
Sbjct: 1294 ASPTS--AAPHPVQAGSLVFEGVQMRYR-EGLPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350

Query: 331  SIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP- 389
            ++    +R  + C G + + G ++    L E+RR  + +PQ P++   +V  N+    P 
Sbjct: 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD---PF 1407

Query: 390  -HATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILK-DSPI 447
              A+  E+  A  L    E +     G D+ + +G  + S GQ Q + +ARA+LK  S  
Sbjct: 1408 LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467

Query: 448  LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGV 507
            +L+DE  + +D   +++I   +       T I  +HRL  +   D + V+    + E G 
Sbjct: 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGS 1527

Query: 508  HEEL 511
              EL
Sbjct: 1528 PREL 1531



 Score = 82.1 bits (203), Expect = 3e-16
 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 15/212 (7%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
           +L++V+ +V  G+   ++G +G+GK+++   +L  ++   G V  E             R
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------R 721

Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424
            IA+VPQ   ++ A+V  NI         + + +A  ++Q    +  L  G +T +G+  
Sbjct: 722 SIAYVPQQAWIMNATVRGNILFFDEEDAAR-LADAVRVSQLEADLAQLGGGLETEIGEKG 780

Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK-VLREQRRGRTTIFASH 483
           V+LS GQ  R+++ARA+  +  + LLD+  SALD    +++ +        G+T + A+H
Sbjct: 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATH 840

Query: 484 RLSAIQDADMVFVLHDQVIVEKGVHEELLKKS 515
           ++  +  AD V  L D  +   G   + ++ S
Sbjct: 841 QVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872


>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 91.0 bits (226), Expect = 7e-19
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 12/238 (5%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350
           R + + Y     +  L N+NF       IA++G +GAGK+++F        P SGSV I 
Sbjct: 7   RDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIR 64

Query: 351 GIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408
           G  +   ++ E+R+F+  V Q+P   + + +V  +IA G  +    E   A  ++ A   
Sbjct: 65  GEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHM 124

Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468
           +G LE   D +      HLS G+ +R+AIA  I  +  +L+LDE  + LD +  +++   
Sbjct: 125 LG-LEELRDRV----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179

Query: 469 LRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHI 523
           L +  +  G T IF++H+L  + + AD ++V+    IV  G  EE+  +    A  H+
Sbjct: 180 LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHL 237


>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
           This family represents the NikE subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
          Length = 265

 Score = 90.6 bits (225), Expect = 9e-19
 Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 21/236 (8%)

Query: 290 FRSVSFVYPGKSKR-SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
           +R+      G  +R  +L NV+ +++ GET+ L+G SG GK+++  L+L    P  G+V 
Sbjct: 12  YRTGGLF--GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69

Query: 349 IEGIDLRLLSLEEIRRF---IAWVPQ------HPIMIAASVYDNIAIGCPHATRKEIQNA 399
             G DL  L  ++ R F   +  V Q      +P M    +     IG P      +  +
Sbjct: 70  FRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQI-----IGEPLRHLTSLDES 124

Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
              A+  E +  +              LS GQ+QRI IARA+     +++LDE  S LD+
Sbjct: 125 EQKARIAELLDMVGLR-SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183

Query: 460 ENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
             +  I ++LR+  Q  G   +F +H L  +Q     V V+    IVE+    +LL
Sbjct: 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239


>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 90.1 bits (224), Expect = 1e-18
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 14/222 (6%)

Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358
           G   + IL +++ ++  G+  AL+G +G GK+++     R   P SG+V +    + +LS
Sbjct: 11  GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLS 70

Query: 359 LEEIRRFIAWVPQ-HPIMIAASVYDNIAIG-CPHAT---RKEIQNAAMLAQAHEFIGCLE 413
             ++ R +A +PQ H      +V + +A G  P  +   R   ++ A + QA E      
Sbjct: 71  SRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH 130

Query: 414 NGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471
                 L D  +  LS GQ QR  +A  + +D+P++LLDE  + LDI ++ ++ +++RE 
Sbjct: 131 ------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184

Query: 472 QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
             +G+T +   H L+ A +  D + VL +  ++ +G  EE++
Sbjct: 185 NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226


>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 258

 Score = 90.2 bits (225), Expect = 1e-18
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 19/223 (8%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
            R++L +V+ T++PGE +A++G +GAGK+++   +     P SG V + G  L   S  E
Sbjct: 14  GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73

Query: 362 IRRFIAWVPQHPIMIAA-SVYDNIAIG-CPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419
           + R  A +PQH  +    +V + +A+G  PH   +  ++ A++A A   +          
Sbjct: 74  LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRA-EDDALVAAALAQVDLAH------ 126

Query: 420 LGDGAVH-LSTGQIQRIAIARAIL------KDSPILLLDEMGSALDIENEQKIWKVLRE- 471
           L       LS G+ QR+ +AR +            LLLDE  SALD+ ++  + ++ R+ 
Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186

Query: 472 -QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
              RG   I   H L+ A + AD + +LH   +V  G   E+L
Sbjct: 187 AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229


>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
           protein.  This model represents LolD, a member of the
           ABC transporter family (pfam00005). LolD is involved in
           localization of lipoproteins in some bacteria. It works
           with a transmembrane protein LolC, which in some species
           is a paralogous pair LolC and LolE. Depending on whether
           the residue immediately following the new, modified
           N-terminal Cys residue, the nascent lipoprotein may be
           carried further by LolA and LolB to the outer membrane,
           or remain at the inner membrane. The top scoring
           proteins excluded by this model include homologs from
           the archaeal genus Methanosarcina.
          Length = 221

 Score = 89.7 bits (223), Expect = 2e-18
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 32/225 (14%)

Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356
             GK    +LK V+ ++  GE +A+VG SG+GK+++  L+    +P SG V   G  L  
Sbjct: 12  QEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSK 71

Query: 357 LSLEEIRRF----IAWVPQ-HPIMIAASVYDNIA----IGCPHATRKEIQNAA--MLAQA 405
           LS  E  +     + ++ Q H ++   +  +N+A    IG    + KE +  A  ML + 
Sbjct: 72  LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG--KKSVKEAKERAYEMLEKV 129

Query: 406 HEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
                         L     H    LS G+ QR+AIARA++    ++L DE    LD  N
Sbjct: 130 G-------------LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176

Query: 462 EQKIWKVLREQRRGRTTIF--ASHRLSAIQDADMVFVLHDQVIVE 504
            + I+ ++ E  R   T F   +H L   +  D V  + D  +  
Sbjct: 177 AKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221


>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 89.6 bits (222), Expect = 2e-18
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 12/223 (5%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLR- 355
           ++  +KNV   +   +  A++G SG GKT++   I R  D        G +  +G D+  
Sbjct: 15  EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74

Query: 356 -LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HAT-RKEIQNAAMLAQAHEFIGCL 412
             L + E R+ +  V Q P     S+YDN+A G   H    K   +  +     +    L
Sbjct: 75  PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKK--AAL 132

Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
            +   + L      LS GQ QR+ IARA+  +  ++LLDE  SALD    Q+I K+L E 
Sbjct: 133 WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL 192

Query: 473 RRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK 514
               T +  +H +  AI+ AD +  ++   ++E G   E++++
Sbjct: 193 SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235


>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
           
          Length = 237

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           L +VN  V  G  +AL+G SG+GK+++  +I     P SG + + G D   +      R 
Sbjct: 16  LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73

Query: 366 IAWVPQHPIMIA-ASVYDNIAIGC------PHATRKEIQNAAMLAQAHEFIGCLENGYDT 418
           I +V QH  +    +V DNIA G           +  ++    L Q         + Y  
Sbjct: 74  IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL----GDRYPN 129

Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGR 476
                   LS GQ QR+A+ARA+  +  +LLLDE   ALD +  +++   LR+       
Sbjct: 130 -------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182

Query: 477 TTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
           TT+F +H    A++ AD + V+ +  I + G  +E+
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218


>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
           ATP-binding component PhnT.  This ATP-binding component
           of an ABC transport system is found in Salmonella and
           Burkholderia lineages in the vicinity of enzymes for the
           breakdown of 2-aminoethylphosphonate.
          Length = 362

 Score = 88.9 bits (220), Expect = 3e-18
 Identities = 71/249 (28%), Positives = 110/249 (44%), Gaps = 27/249 (10%)

Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP--C 343
           G +    +   Y      ++L +++  ++ GE +AL+G SG GKT++   I  F      
Sbjct: 4   GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60

Query: 344 SGSVEIEGIDLRLLSLEEIRRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAML 402
           +G + I   DL        +R +A + Q + +     V DN+A G       +   A  +
Sbjct: 61  TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118

Query: 403 AQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
           A A + +G         LGD A H    LS G  QRIAIARAI  +  +LLLDE  SALD
Sbjct: 119 ADALKLVG---------LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD 169

Query: 459 IE---NEQKIWKVLREQRRGRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514
                N ++    L E+    T +  +H +  A+  AD   ++ D  +   G  + L   
Sbjct: 170 ANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229

Query: 515 --SGFYAHY 521
              GF A +
Sbjct: 230 PADGFAAEF 238


>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 275

 Score = 88.2 bits (219), Expect = 4e-18
 Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 31/236 (13%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF---YDPCSGSV 347
           R + + YP  +    LK +NF  + GE +AL+G +GAGK+++F   L F     P SG V
Sbjct: 5   RDLKYSYPDGT--EALKGINFKAEKGEMVALLGPNGAGKSTLF---LHFNGILKPTSGEV 59

Query: 348 EIEG--IDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIA-----IGCPHATRKEIQN 398
            I+G  I     SL E+R+ +  V Q+P   + A +V +++A     +G      +E++ 
Sbjct: 60  LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSK---EEVEK 116

Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSAL 457
                +A + +G    G++        HLS GQ +R+AIA  IL   P I++LDE  S L
Sbjct: 117 RVK--EALKAVGM--EGFEN---KPPHHLSGGQKKRVAIA-GILAMKPEIIVLDEPTSGL 168

Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
           D     +I K+L +  + G T I ++H +  +   AD V+V+ D  I+++G  +E+
Sbjct: 169 DPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224


>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
           subunit.  This model describes the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea. This transport system belong
           to the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Functionally, this transport system is involved
           in osmoregulation. Under conditions of stress, the
           organism recruits these transport system to accumulate
           glycine betaine and other solutes which offer
           osmo-protection. It has been demonstrated that glycine
           betaine uptake is accompanied by symport with sodium
           ions. The locus has been named variously as proU or
           opuA. A gene library from L.lactis functionally
           complements an E.coli proU mutant. The comlementing
           locus is similar to a opuA locus in B.sutlis. This
           clarifies the differences in nomenclature.
          Length = 363

 Score = 88.4 bits (219), Expect = 4e-18
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 13/216 (6%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI--- 362
           + + +  +  GE   ++G SG+GK++   ++ R  +P +G + I+G ++   S  E+   
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68

Query: 363 -RRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
            R+ I  V Q   +    ++  N ++G       E +      +  + +G LE       
Sbjct: 69  RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG-LEEYEHRYP 127

Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD--IENEQKIWKVLREQRRGRTT 478
            +    LS G  QR+ +ARA+  +  ILL+DE  SALD  I +  +      +    +T 
Sbjct: 128 DE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183

Query: 479 IFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLK 513
           +F +H L  AI+  D + ++    IV+ G  +E+L+
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219


>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
           subunit; Provisional.
          Length = 400

 Score = 88.2 bits (218), Expect = 5e-18
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 26/248 (10%)

Query: 284 VLGSVSFRSVSFVYPGKSKRSIL---------KNVNFTVQPGETIALVGDSGAGKTSIFS 334
           + G    R+  ++  G SK  IL         K+ +  ++ GE   ++G SG+GK+++  
Sbjct: 13  IFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVR 72

Query: 335 LILRFYDPCSGSVEIEGIDLRLLS---LEEIRR-FIAWVPQH-PIMIAASVYDNIAIGCP 389
           L+ R  +P  G V I+G+D+  +S   L E+RR  IA V Q   +M   +V DN A G  
Sbjct: 73  LLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132

Query: 390 HA--TRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPI 447
            A    +E +  A+ A     +    + Y          LS G  QR+ +ARA+  +  I
Sbjct: 133 LAGINAEERREKALDALRQVGLENYAHSYPD-------ELSGGMRQRVGLARALAINPDI 185

Query: 448 LLLDEMGSALD--IENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVE 504
           LL+DE  SALD  I  E +   V  + +  RT +F SH L  A++  D + ++ +  +V+
Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245

Query: 505 KGVHEELL 512
            G  +E+L
Sbjct: 246 VGTPDEIL 253


>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
           protein.  Members of this family are the ATP-binding
           protein of the D-methionine ABC transporter complex.
           Known members belong to the Proteobacteria.
          Length = 343

 Score = 87.6 bits (217), Expect = 7e-18
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 12/223 (5%)

Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356
           + G      L NV+  V  G+   ++G SGAGK+++   +     P SGSV ++G DL  
Sbjct: 12  HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71

Query: 357 LSLEEI---RRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412
           LS  E+   RR I  + QH  ++ + +V+ N+A+        + +    + +    +G L
Sbjct: 72  LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG-L 130

Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
            + +D+       +LS GQ QR+AIARA+  +  +LL DE  SALD    Q I ++L+E 
Sbjct: 131 GDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186

Query: 473 RR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
            R  G T +  +H +  ++   D V V+ +  ++E+G   E+ 
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229


>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
           Provisional.
          Length = 232

 Score = 87.3 bits (217), Expect = 9e-18
 Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%)

Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369
           + TV+ GE +A++G SGAGK+++ +LI  F  P SGS+ + G D         RR ++ +
Sbjct: 19  DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76

Query: 370 PQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428
            Q   + +  +V  NI +G     +        L      +G +E+    + G     LS
Sbjct: 77  FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-IEDLLARLPG----QLS 131

Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLS 486
            GQ QR+A+AR ++++ PILLLDE  SALD    Q++  ++ +  Q R  T +  SH L 
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191

Query: 487 -AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMS 527
            A + A    V+ D  I   G  +ELL  SG  +   +LG+ 
Sbjct: 192 DAARIAPRSLVVADGRIAWDGPTDELL--SGKASASALLGIK 231


>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350
           ++++F Y    ++  L +V+F V+ GE ++++G +G+GK++   LI    +  SG + I+
Sbjct: 8   KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIID 67

Query: 351 GIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAI-----GCPHATRKEIQNAAMLA 403
           G  L   ++ +IR  I  V Q+P    + A+V D++A      G PH   KE  N     
Sbjct: 68  GDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN----- 122

Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
           +A E +G  +             LS GQ QR+AIA A+     I++LDE  S LD E   
Sbjct: 123 EALELVGMQD-----FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL 177

Query: 464 KIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHD 499
           ++ K ++        T I  +H L  +  +D V V+ +
Sbjct: 178 ELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKN 215


>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
           protein LsrA; Provisional.
          Length = 510

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 19/235 (8%)

Query: 281 PSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY 340
             P+L     RS+S  Y G     +LK ++FT+  GE  AL+G +GAGK+++  +I    
Sbjct: 8   APPLL---CARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61

Query: 341 DPCSGSVEIEGIDLRLLSLEEIRRF-IAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQN 398
            P SG++EI G     L+  +  +  I  VPQ P++    SV +NI  G P       + 
Sbjct: 62  PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKM 121

Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
             +LA     +GC  +     L   A  L     Q + I R +++DS IL+LDE  ++L 
Sbjct: 122 KQLLAA----LGCQLD-----LDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172

Query: 459 IENEQKIWKVLRE-QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEEL 511
               ++++  +RE   +G   +F SH+L  I Q AD + V+ D  I   G   +L
Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227



 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 16/207 (7%)

Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LEEIRRF 365
           +N++  V+ GE + L G  GAG+T +   +        G + + G ++  LS  + + R 
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339

Query: 366 IAWVP----QHPIMIAASVYDNIAIGCPHATR----KEIQNAAMLAQAHEFIGCLENGYD 417
           + ++P       + + A +  N+     H  R    K  +  A+L +    +    N  +
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNVC-ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE 398

Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGR 476
                    LS G  Q++ IA+ +     +L++DE    +D+     I++++R    +  
Sbjct: 399 QAART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454

Query: 477 TTIFASHRLSAI-QDADMVFVLHDQVI 502
             +F S  L  I Q AD V V+H   I
Sbjct: 455 AVLFISSDLEEIEQMADRVLVMHQGEI 481


>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
           This family represents the NikD subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
           NikD and NikE are homologous.
          Length = 230

 Score = 85.5 bits (212), Expect = 3e-17
 Identities = 66/214 (30%), Positives = 112/214 (52%), Gaps = 14/214 (6%)

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP----CSGSVEIEGIDLRLLSLEEIR 363
           ++N +++ GE +ALVG+SG+GK+     IL    P     SG + ++G  L  LS+    
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI--RG 61

Query: 364 RFIAWVPQHPIMI---AASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
           R IA + Q+P        ++ ++         +   Q  A++ +A E +G L +  + +L
Sbjct: 62  RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG-LPDP-EEVL 119

Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTT 478
                 LS G +QR+ IA A+L + P L+ DE  + LD+ N+ ++ K+LRE  Q  G   
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179

Query: 479 IFASHRLSAI-QDADMVFVLHDQVIVEKGVHEEL 511
           +  +H L  + + AD V V+ D  IVE+G  +E+
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213


>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
          Length = 222

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 12/206 (5%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + F  VS  Y G   R  L+ V F ++PGE   L G SGAGK+++  LI     P +G +
Sbjct: 2   IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59

Query: 348 EIEGIDLRLLSLEEI---RRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403
              G D+  L   E+   RR I  + Q H +++  +VYDN+AI    A          ++
Sbjct: 60  WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119

Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
            A + +G L+   +       + LS G+ QR+ IARA++    +LL DE    LD    +
Sbjct: 120 AALDKVGLLDKAKNF-----PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174

Query: 464 KIWKVLRE-QRRGRTTIFASHRLSAI 488
            I ++  E  R G T + A+H +  I
Sbjct: 175 GILRLFEEFNRVGVTVLMATHDIGLI 200


>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
           ATP-binding protein.  This small clade of ABC-type
           transporter ATP-binding protein components is found as a
           three gene cassette along with a periplasmic
           substrate-binding protein (TIGR03868) and a permease
           (TIGR03869). The organisms containing this cassette are
           all Actinobacteria and all contain numerous genes
           requiring the coenzyme F420. This model was defined
           based on five such organisms, four of which are lacking
           all F420 biosynthetic capability save the final
           side-chain polyglutamate attachment step (via the gene
           cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
           marine actinobacterium PHSC20C1 this cassette is in an
           apparent operon with the cofE gene and, in PHSC20C1,
           also with a F420-dependent glucose-6-phosphate
           dehydrogenase (TIGR03554). Based on these observations
           we propose that this ATP-binding protein is a component
           of an F420-0 (that is, F420 lacking only the
           polyglutamate tail) transporter.
          Length = 256

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 8/215 (3%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
           R I+  V+ T  PG    L+G +G+GK+++  L+     P +G+V++ G+DL  LS    
Sbjct: 14  RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73

Query: 363 RRFIAWVPQH-PIMIAASVYDNIAIG-CPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
            R +A V Q     +  +V D +A+G  PH +     +    A     +   E    + L
Sbjct: 74  ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL---SHL 130

Query: 421 GDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRTT 478
            D  +  LS G+ QR+ +ARA+ ++  +LLLDE  + LD+  + +   ++RE    G T 
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190

Query: 479 IFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
           + A H L+ A    D V VL    +V  G   E+L
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225


>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
           family.  Members of this protein family are found mostly
           in the Cyanobacteria, but also in the Planctomycetes.
           Cyanobacterial examples are involved in heterocyst
           formation, by which some fraction of members of the
           colony undergo a developmental change and become capable
           of nitrogen fixation. The DevBCA proteins are thought
           export of either heterocyst-specific glycolipids or an
           enzyme essential for formation of the laminated layer
           found in heterocysts.
          Length = 220

 Score = 85.1 bits (211), Expect = 4e-17
 Identities = 62/225 (27%), Positives = 115/225 (51%), Gaps = 32/225 (14%)

Query: 288 VSFRSVSFVY-PGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
           +S R+++  Y  G  ++ +L ++N  + PGE + L G SG+GKT++ +LI        GS
Sbjct: 2   ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61

Query: 347 VEIEGIDLRLLS---LEEIRRFIAWVPQ-HPIMIAASVYDNIAIGC---PHATRKEI--Q 397
           +++ G +L   S   L ++RR I ++ Q H ++   +   N+ +     P+ + +E   +
Sbjct: 62  LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER 121

Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
             AML    E +G L +  D    +    LS GQ QR+AIARA++    ++L DE  +AL
Sbjct: 122 ARAML----EAVG-LGDHLDYYPHN----LSGGQKQRVAIARALVHRPKLVLADEPTAAL 172

Query: 458 DIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVI 502
           D ++ + + ++++             +L+  Q   ++ V HD  I
Sbjct: 173 DSKSGRDVVELMQ-------------KLAREQGCTILIVTHDNRI 204


>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 85.1 bits (210), Expect = 5e-17
 Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 13/221 (5%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRLL 357
           +  +KNVN  VQ G   AL+G SG GKT+    I R +D       +G + ++G D+   
Sbjct: 17  KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76

Query: 358 SLEEI--RRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN 414
            ++ +  RR +  V Q P      SV+DN+  G   A  ++  +   +A+       L +
Sbjct: 77  RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136

Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
                L   A  LS GQ QR+ IARA+  +  ILL+DE  SALD  +  +I  ++ + ++
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196

Query: 475 GRTTIFASHRL---SAIQDADMVFVLHDQVIVEKGVHEELL 512
             T I  +H +   + + D    F++ D  +VE G  ++L 
Sbjct: 197 VTTIIIVTHNMHQAARVSDTTSFFLVGD--LVEHGPTDQLF 235


>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 246

 Score = 84.7 bits (209), Expect = 5e-17
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 7/218 (3%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS---GSVEIEGIDLRLLS 358
           K+  L ++N  ++  +  AL+G SG GK++      R  D  +   G VEIEG D++   
Sbjct: 14  KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73

Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HAT-RKEIQNAAMLAQAHEFIGCLENGY 416
           +  +R+ +  V Q P +   S+Y+NI+     H   + + +  A++    + +G  E   
Sbjct: 74  VVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476
           D  L   A+ LS GQ QR+ IARA+     +LLLDE  SALD  +   I ++L+E     
Sbjct: 134 DK-LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192

Query: 477 TTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLK 513
           + I  +H +    + AD     H   ++E G  +E  +
Sbjct: 193 SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230


>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
            Members of this family are the PhnL protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated C-P lysase complex. This protein
           (PhnL) and the adjacent-encoded PhnK (TIGR02323)
           resemble transporter ATP-binding proteins but are
           suggested, based on mutatgenesis studies, to be part of
           this C-P lyase complex rather than part of a transporter
           per se.
          Length = 224

 Score = 84.4 bits (209), Expect = 7e-17
 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 25/198 (12%)

Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI----EGIDL 354
           G  +  +LKNV+ TV  GE +AL G SGAGK+++   +   Y P SG + +      +DL
Sbjct: 17  GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76

Query: 355 RLLS---LEEIRRF-IAWVPQH----PIMIAASVYDN--IAIGCPHATRKEIQNAAMLAQ 404
              S   + E+RR  I +V Q     P + A  V     +  G P       +  A    
Sbjct: 77  AQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE---AARARARELL 133

Query: 405 AHEFIGCLENGYDTILGDGA-VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
           A   I          L        S G+ QR+ IAR  + D PILLLDE  ++LD  N Q
Sbjct: 134 ARLNI-------PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186

Query: 464 KIWKVLREQRRGRTTIFA 481
            + +++ E +     +  
Sbjct: 187 VVVELIAEAKARGAALIG 204


>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
           transporter ATP-binding subunit GldA.  Members of this
           protein family are exclusive to the Bacteroidetes phylum
           (previously Cytophaga-Flavobacteria-Bacteroides). GldA
           is an ABC transporter ATP-binding protein (pfam00005)
           linked to a type of rapid surface gliding motility found
           in certain Bacteroidetes, such as Flavobacterium
           johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
           abolish the gliding phenotype. Gliding motility appears
           closely linked to chitin utilization in the model
           species Flavobacterium johnsoniae. Bacteroidetes with
           members of this protein family appear to have all of the
           genes associated with gliding motility.
          Length = 301

 Score = 83.3 bits (206), Expect = 1e-16
 Identities = 57/232 (24%), Positives = 110/232 (47%), Gaps = 37/232 (15%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
           S+   S++ +Y     ++ L  V+F  Q G  +  +G +GAGK++   +I  +  P SGS
Sbjct: 2   SIRVSSLTKLY---GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58

Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQH-PIMIAASVYDNIAI-----GCPHATRKEIQNAA 400
           V++ G D+ L + +E++R I ++P+H P+ +   V + +       G      K+ +   
Sbjct: 59  VQVCGEDV-LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-RVEE 116

Query: 401 MLAQ------AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454
           M+         H+ IG L  GY                QR+ +A+A++ D  +L+LDE  
Sbjct: 117 MIELVGLRPEQHKKIGQLSKGYR---------------QRVGLAQALIHDPKVLILDEPT 161

Query: 455 SALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
           + LD     +I  V++   + +T I ++H +  ++      +    +I+ KG
Sbjct: 162 TGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA-----ICDRVIIINKG 208


>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 83.5 bits (206), Expect = 1e-16
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 23/235 (9%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           +   +VS+ YP  +    L+N+N  ++ GE I ++G +G+GK+++   +     P  G V
Sbjct: 2   IRLENVSYSYPDGT--PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59

Query: 348 EIEGIDLRLLS-LEEIRRFIAWVPQHP--IMIAASVYDNIAIG----C--PHATRKEIQN 398
            + GID    S L+ IR+ +  V Q+P    +  +V +++A G    C  P   RK +  
Sbjct: 60  LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119

Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
           A  LA         E G +         LS GQ Q +A+A  +  +   L+ DE+ S LD
Sbjct: 120 A--LA---------EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168

Query: 459 IENEQKIW-KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512
            ++   +  ++ +   +G+T ++ +H L  + DAD + V+    IV +G  E +L
Sbjct: 169 PDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223


>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
           This model describes the ATP binding subunit of the
           multisubunit cobalt transporter in bacteria and its
           equivalents in archaea. The model is restricted to ATP
           subunit that is a part of the cobalt transporter, which
           belongs to the ABC transporter superfamily (ATP Binding
           Cassette). The model excludes ATP binding subunit that
           are associated with other transporters belonging to ABC
           transporter superfamily. This superfamily includes two
           groups, one which catalyze the uptake of small
           molecules, including ions from the external milieu and
           the other group which is engaged in the efflux of small
           molecular weight compounds and ions from within the
           cell. Energy derived from the hydrolysis of ATP drive
           the both the process of uptake and efflux.
          Length = 190

 Score = 82.9 bits (205), Expect = 2e-16
 Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 14/193 (7%)

Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--IDL 354
           YPG  +  +LK +NF  + GE +AL+G +GAGK+++   +     P SG+V I+G  +D 
Sbjct: 1   YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58

Query: 355 RLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412
               L E R+ +  V Q P   + AA V  ++A G  +    E +    + +A   +G  
Sbjct: 59  SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118

Query: 413 ENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
                  L +   H LS G+ +R+AIA A+     +LLLDE  + LD    +++  +LR 
Sbjct: 119 G------LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172

Query: 472 QR-RGRTTIFASH 483
            R  G T + ++H
Sbjct: 173 LRAEGMTVVISTH 185


>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 82.8 bits (205), Expect = 2e-16
 Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 16/238 (6%)

Query: 287 SVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344
           S+   +++ +Y   +  ++  L NVN  ++ GE + L+G +G+GK+++   +     P S
Sbjct: 2   SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61

Query: 345 GSVEIEGIDL--RLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPH--ATRKEIQN 398
           G + I+G+D+  + + L +IR+ +  V Q+P   +   ++  +IA G  +   + +EI+N
Sbjct: 62  GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIEN 121

Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
              + +A   +G     Y+         LS GQ +R+AIA  +  +  IL+LDE  + LD
Sbjct: 122 R--VKRAMNIVGL---DYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176

Query: 459 IENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
            +   +I   ++E  +    T I  SH +  +   AD + V++      +G   E+ K
Sbjct: 177 PKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234


>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 13/223 (5%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS-----GSVEIEGIDL-- 354
            + IL ++N  +   E  A +G SG GK++      R  D        G ++I+GID+  
Sbjct: 17  SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76

Query: 355 RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNA-AMLAQAHEFIGC 411
              ++  +R  +  V Q P     S+YDN+A G P  H   K  +    ++ ++   +G 
Sbjct: 77  VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-PKLHGLAKNKKKLDEIVEKSLTSVGL 135

Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
            E   D  L D A  LS GQ QR+ IARAI     +LL+DE  SALD      I  +++E
Sbjct: 136 WEELGDR-LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194

Query: 472 QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
            ++  T I  +H +   +  +D V       IVE    +E+ K
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237


>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 61/229 (26%), Positives = 119/229 (51%), Gaps = 19/229 (8%)

Query: 287 SVSFRSVSFVY-PGKSKRSI-LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344
           S+ F +V ++Y PG       L N++F ++ G  +ALVG +G+GK+++         P S
Sbjct: 2   SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61

Query: 345 GSVEIEGIDLRL----LSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPH--ATRKEI 396
           G++ I G  +       +L+++R+ ++ V Q P   +   +V  ++  G  +   +  E 
Sbjct: 62  GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121

Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
           +  A+  +  + +G  E+    ++      LS GQ++R+AIA  +  +  IL LDE  + 
Sbjct: 122 KEKAL--KWLKKVGLSED----LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175

Query: 457 LDIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVL-HDQVI 502
           LD E  +++ ++ ++ Q+ G T I  +H +  + + AD V VL H ++I
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224


>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 269

 Score = 81.4 bits (201), Expect = 5e-16
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 27/222 (12%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD---PC 343
            +S ++V+  Y G  +   +KNV   +  G+  AL+G SG GK+++   + R  D    C
Sbjct: 13  IISLQNVTISY-GTFE--AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGC 69

Query: 344 S--GSVEIEGIDLRLLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNA 399
           S  G V  +G DL    ++  E+RR I  V Q P     S+Y+NIA G     R      
Sbjct: 70  SLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG----ARINGYTG 125

Query: 400 AM-------LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
            M       L +A  +  C +      L +    LS GQ QR+ IAR I  +  ++L+DE
Sbjct: 126 DMDELVERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180

Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADM 493
             SALD  +  KI + + E ++  T +  +H +  A++ +DM
Sbjct: 181 PCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDM 222


>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 80.9 bits (200), Expect = 8e-16
 Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 16/221 (7%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358
           LK +N  ++  +  AL+G SG GK++    + R  D        G V ++G D+    + 
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78

Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENGY 416
           + ++R+ +  V Q P     S+YDN+A G P  H  + + +   ++ ++ +     +   
Sbjct: 79  VNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGAALWDEVK 137

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476
           D  L   A+ LS GQ QR+ IARA+  +  +LL+DE  SALD  +  KI ++++E ++  
Sbjct: 138 DR-LKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196

Query: 477 TTIFASHRL---SAIQDADMVFVLHDQVIVEKGVHEELLKK 514
           T +  +H +   S I D    F+  +  IVE G   +L   
Sbjct: 197 TIVIVTHNMQQASRISDKTAFFLNGE--IVEFGDTVDLFTN 235


>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
           Provisional.
          Length = 353

 Score = 80.9 bits (200), Expect = 8e-16
 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 29/225 (12%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
           +  +L +++  +  G+ +AL+G SG+GKT++  +I       SG +   G D+  L   +
Sbjct: 14  RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD 73

Query: 362 IRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAA-----------MLAQAHEFI 409
             R + +V QH  +    +V+DNIA G     R+E  NAA           M+  AH   
Sbjct: 74  --RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH--- 128

Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
             L + Y          LS GQ QR+A+ARA+  +  ILLLDE   ALD +  +++ + L
Sbjct: 129 --LADRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179

Query: 470 RE--QRRGRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEEL 511
           R+  +    T++F +H +  A++ AD V V+    I + G  +++
Sbjct: 180 RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224


>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 257

 Score = 80.5 bits (198), Expect = 1e-15
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 10/230 (4%)

Query: 292 SVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF---YDP---CSG 345
           ++S +Y   + ++ILK++   +       ++G SG+GK+++  ++ R    YD      G
Sbjct: 12  NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71

Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGC-PHATRKEIQNAAMLA 403
            V   G D+  +   ++R+ +  V Q P      S+YDNIA     H  +++ +   ++ 
Sbjct: 72  KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131

Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
           +    +G  +  YD  L   A  LS GQ QR+ IARA+     +LL+DE  S +DI N Q
Sbjct: 132 ECLRKVGLWKEVYDR-LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190

Query: 464 KIWKVLREQRRGRTTIFASHR-LSAIQDADMVFVLHDQVIVEKGVHEELL 512
            I K++ E +     +  SH      + AD V  L++  +VE G   E+ 
Sbjct: 191 AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240


>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
           ATP-binding protein.  This ABC transporter ATP-binding
           protein is found in a number of genomes in operon-like
           contexts strongly suggesting a substrate specificity for
           2-aminoethylphosphonate (2-AEP). The characterized
           PhnSTUV system is absent in the genomes in which this
           system is found. These genomes encode systems for the
           catabolism of 2-AEP, making the need for a
           2-AEP-specific transporter likely.
          Length = 353

 Score = 80.1 bits (198), Expect = 1e-15
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 23/218 (10%)

Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIR 363
           + LK+++ +V+ GE + L+G SG GKT++  +I       +G++   G D+  L  +  +
Sbjct: 18  TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75

Query: 364 RFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL--ENGYD 417
           R    V Q     P +   +V DNIA G  +      + A  +A+  + +G    E  Y 
Sbjct: 76  RDYGIVFQSYALFPNL---TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP 132

Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALDIENEQKIWKVLRE-QRR- 474
                    LS GQ QR+A+ARA L  SP +LLLDE  SALD    + +   +R+ QRR 
Sbjct: 133 G-------QLSGGQQQRVALARA-LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL 184

Query: 475 GRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEEL 511
           G TTI  +H +  A+  AD + V++  VI + G  +E+
Sbjct: 185 GVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222


>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 14/219 (6%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRLLSL 359
           +L  VN  +      AL+G SG+GK+++  +  R  +       SG V ++G D+  + +
Sbjct: 18  VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77

Query: 360 EEIRRFIAWVPQHPIMIAA-SVYDNIAIGCP----HATRKEIQNAAMLAQAHEFIGCLEN 414
            E+RR +  V Q P  I   S+++N+A+G        ++KE+Q    +  A E     + 
Sbjct: 78  IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ--ERVRWALEKAQLWDE 135

Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
             D  L   A  LS GQ QR+ IARA+     +LL DE  + LD EN  KI  +  E ++
Sbjct: 136 VKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK 194

Query: 475 GRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEELL 512
             T +  +H    A + +D V  L+   IVE G   E+ 
Sbjct: 195 DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233


>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
           subunit.  This model describes spermidine/putrescine ABC
           transporter, ATP binding subunit in bacteria and its
           equivalents in archaea. This transport system belong to
           the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Polyamines like spermidine and putrescine play
           vital role in cell proliferation, differentiation, and
           ion homeostasis. The concentration of polyamines within
           the cell are regulated by biosynthesis, degradation and
           transport (uptake and efflux included).
          Length = 325

 Score = 79.8 bits (197), Expect = 2e-15
 Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 31/205 (15%)

Query: 321 LVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQH----PIMI 376
           L+G SG GKT++  L+  F  P SGS+ ++G D+  +      R I  V Q     P M 
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHM- 57

Query: 377 AASVYDNIAIGC-----PHATRKEIQNAAM-LAQAHEFIGCLENGYDTILGDGAVH-LST 429
             +V +N+A G      P A  K     A+ L Q  EF             D   H LS 
Sbjct: 58  --TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEF------------ADRKPHQLSG 103

Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIE-NEQKIWKVLREQRR-GRTTIFASHRLS- 486
           GQ QR+A+ARA++    ILLLDE  SALD +  +Q   ++   Q + G T +F +H    
Sbjct: 104 GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEE 163

Query: 487 AIQDADMVFVLHDQVIVEKGVHEEL 511
           A+  +D + ++    I + G  EE+
Sbjct: 164 AMTMSDRIAIMRKGKIAQIGTPEEI 188


>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
           Provisional.
          Length = 268

 Score = 79.0 bits (195), Expect = 3e-15
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 13/227 (5%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
           S  +         + +  +L NV+ +++ GET+AL+G SG GK+++  L++    P  G+
Sbjct: 10  SHHYAHGGLSGKHQHQT-VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68

Query: 347 VEIEGIDLRLLSLEEIRRF---IAWVPQHPIMIA---ASVYDNIAIGCPHATRKEIQNAA 400
           V   G  L  L+  + + F   I  V Q  I       +V + I     H     +  A 
Sbjct: 69  VSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAE 126

Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
            LA+A E +  ++   D++L      LS GQ+QR+ +ARA+  +  +L+LDE  S LD+ 
Sbjct: 127 RLARASEMLRAVDLD-DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185

Query: 461 NEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVE 504
            +  + ++L++  Q+ G   +F +H L  ++     V V+ +  IVE
Sbjct: 186 LQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232


>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
           Provisional.
          Length = 351

 Score = 78.6 bits (194), Expect = 4e-15
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 33/236 (13%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
             +++ N+N T++ G  + L+G SG GKT++  L+     P  G + I+G D+   S+++
Sbjct: 18  SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ 77

Query: 362 IRRFIAWVPQH----PIMIAASVYDNIA-----IGCPHATRKE-IQNAAMLAQAHEFIGC 411
             R I  V Q     P M   S+ +N+      +G P   RK+ ++ A  L     F   
Sbjct: 78  --RDICMVFQSYALFPHM---SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF--- 129

Query: 412 LENGY-DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
            E+ Y D I        S GQ QR+A+ARA++    +LL DE  S LD    + + + +R
Sbjct: 130 -EDRYVDQI--------SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180

Query: 471 E--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK--SGFYAHY 521
           E  Q+   T+++ +H  S A   +D V V++   I++ G  +EL ++  S F A +
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF 236


>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
           protein.  Members of this protein family are the
           ATP-binding subunit of a three-protein transporter. This
           family belongs, more broadly, to the family of proline
           and glycine-betaine transporters, but members have been
           identified by direct characterization and by
           bioinformatic means as choline transporters. Many
           species have several closely-related members of this
           family, probably with variable abilities to act
           additionally on related quaternary amines.
          Length = 382

 Score = 78.3 bits (193), Expect = 4e-15
 Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 32/255 (12%)

Query: 299 GKSKRSILK---------NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349
           GK++  IL          N +  ++ GE   L+G SG+GK+S+   +        GSV +
Sbjct: 24  GKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLV 83

Query: 350 EG----IDLRLLSLEEIRRF----IAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAA 400
           +     ID+       +RR     ++ V Q   +M   +V +N+A G       E +   
Sbjct: 84  KDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRK 143

Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
            + +  E +G L    D   G+    LS G  QR+ +ARA   D+ ILL+DE  SALD  
Sbjct: 144 RVDEQLELVG-LAQWADKKPGE----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPL 198

Query: 461 NEQKIW-KVLREQRRGRTTI-FASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKKSG- 516
              ++  ++L  Q +   TI F SH L  A++  + + ++    I++ G  EE++     
Sbjct: 199 IRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPAN 258

Query: 517 -----FYAHYHILGM 526
                F AH + L +
Sbjct: 259 DYVADFVAHTNPLNV 273


>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 78.5 bits (193), Expect = 4e-15
 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--------I 352
            ++  L ++N  +   +  AL+G SG GK++    + R  D  S  V+IEG        I
Sbjct: 15  GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISN-VKIEGEVLLDGKNI 73

Query: 353 DLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIG 410
             + + + E+R+ +  V Q P     S+YDN+A G P  H  + + +   ++  A +   
Sbjct: 74  YDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG-PRIHGIKDKKELDKIVEWALKKAA 132

Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
             +   D  L   A+ LS GQ QR+ IAR I     ++L+DE  SALD  +  KI  ++ 
Sbjct: 133 LWDEVKDD-LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191

Query: 471 EQRRGRTTIFASHRL---SAIQDADMVFVLHDQVIVEKGVHEELL 512
           E ++  T +  +H +   S + D    F++ D  ++E    E++ 
Sbjct: 192 ELKKEYTIVIVTHNMQQASRVSDYTAFFLMGD--LIEFNKTEKIF 234


>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 78.2 bits (192), Expect = 4e-15
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 295 FVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL 354
           F Y  +S  + L  V+F++  GE ++++G +G+GK++   LI   ++   G V+I+G  L
Sbjct: 12  FKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71

Query: 355 RLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412
              ++  +RR I  V Q+P    + A+V D++A G  +   + I    M+ +  E +  +
Sbjct: 72  TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMEN---QGIPREEMIKRVDEALLAV 128

Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471
            N  D    + A  LS GQ QR+A+A  I     I++LDE  S LD    Q+I +V+ E 
Sbjct: 129 -NMLDFKTREPA-RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186

Query: 472 -QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKS 515
            ++   T +  +H L     +D + V+    I+++    EL   S
Sbjct: 187 KEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231


>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 78.0 bits (192), Expect = 6e-15
 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 38/202 (18%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR- 364
           L++ +FTV  G   ALVG +G+GK+++F  ++ F    SG + I G   R    + +++ 
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78

Query: 365 FIAWVPQH-------PIMIAASV----YDNIA-IGCPHATRKEIQNAA-----MLAQAHE 407
            +A+VPQ        P+++   V    Y ++  +       ++I  AA     M+   H 
Sbjct: 79  LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR 138

Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
            IG                LS GQ +R+ +ARAI +   ++LLDE  + +D++ E +I  
Sbjct: 139 QIG---------------ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS 183

Query: 468 VLREQR-RGRTTIFASHRLSAI 488
           +LRE R  G+T + ++H L ++
Sbjct: 184 LLRELRDEGKTMLVSTHNLGSV 205


>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 77.7 bits (191), Expect = 6e-15
 Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 18/221 (8%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS-----GSVEIEGIDL--RLL 357
           ILKNVN  +      AL+G SG GK++    + R  D        G + ++G+D+    +
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77

Query: 358 SLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGY 416
            + E+R+ +  V Q P     S++DN+A G   H    E      + ++ +     +   
Sbjct: 78  DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476
           D  L   A+ LS GQ QR+ IAR I     ++L+DE  SALD  +  KI  ++ + +   
Sbjct: 138 DK-LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDY 196

Query: 477 TTIFASHRLSAIQDADMV-----FVLHDQVIVEKGVHEELL 512
           T +  +H +   Q A  V     F L+ + I+E G+ +++ 
Sbjct: 197 TIVIVTHNM---QQATRVSKYTSFFLNGE-IIESGLTDQIF 233


>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
           protein YecC; Provisional.
          Length = 250

 Score = 77.9 bits (192), Expect = 7e-15
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 29/228 (12%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL---RLLS- 358
           +++L  ++  V+PGE +A++G SG+GKT++   I     P +G++ +  I +   R LS 
Sbjct: 16  QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75

Query: 359 ----LEEIRRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL- 412
               + ++R+ + +V Q+  +    +V +NI  G P   + E +  A  A+A E +  + 
Sbjct: 76  QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEAT-ARARELLAKVG 133

Query: 413 ----ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468
               E  Y          LS GQ QR+AIARA+     ++L DE  SALD E   ++   
Sbjct: 134 LAGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186

Query: 469 LR---EQRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
           +R   +++  RT +  +H +S  +D AD    +    IVE+G  + L 
Sbjct: 187 IRQLAQEK--RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232


>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 77.4 bits (190), Expect = 8e-15
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 32/213 (15%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--PCS---G 345
           R V+F Y        LK ++  ++    +A +G SG GK++   L  R  D  P +   G
Sbjct: 7   RDVNFWY---GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63

Query: 346 SVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIG-----------CPHAT 392
            + I+G ++  + + ++E+R+ +  V Q P     S+++N+A G                
Sbjct: 64  EIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV 123

Query: 393 RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
            + ++ AA+  +  +            L + A  LS GQ QR+ IARA+     +LL+DE
Sbjct: 124 EETLKGAALWDEVKD-----------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172

Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485
             SALD  +  K+ +++ E ++  T +  +H +
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNM 205


>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
           Provisional.
          Length = 233

 Score = 77.2 bits (190), Expect = 9e-15
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 24/201 (11%)

Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358
           G  +  +L NV+F++  GE +A+VG SG+GK+++  L+     P SG V   G  +  LS
Sbjct: 18  GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS 77

Query: 359 LE---EIR-RFIAWVPQ-HPIMIAASVYDNIA----IGCPHATRKEIQNAA--MLAQAHE 407
                E+R + + ++ Q H ++   +  +N+A    IG       EI + A  MLA    
Sbjct: 78  SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG--KKKPAEINSRALEMLAA--- 132

Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
            +G                LS G+ QR+AIARA++ +  ++L DE    LD  N   I++
Sbjct: 133 -VGLEHRANHR-----PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186

Query: 468 VLRE--QRRGRTTIFASHRLS 486
           +L E  + +G   +  +H L 
Sbjct: 187 LLGELNRLQGTAFLVVTHDLQ 207


>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 265

 Score = 77.0 bits (189), Expect = 1e-14
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341
           SP         ++F Y G      LKN+N  V   +  AL+G SG GK++      R +D
Sbjct: 11  SPTQQKSEVNKLNFYYGGYQA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67

Query: 342 --PCS---GSVEIEGIDLRLLSLE----EIRRFIAWVPQHPIMIAASVYDNIAIGCPHAT 392
             P +   G + +   ++ +LS E    E+R  I+ V Q P     S+++N+A G     
Sbjct: 68  LYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGL---R 124

Query: 393 RKEIQNAAMLAQAHEFIGCLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPI 447
            + ++  ++L +  E    L N   +D +   LGD A +LS GQ QR+ IARA+  D  I
Sbjct: 125 IRGVKRRSILEERVE--NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEI 182

Query: 448 LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKG 506
           LL DE  SALD      I +++ + +   T +  +H +  A + +D    ++   ++E G
Sbjct: 183 LLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242

Query: 507 VHEELLKK 514
             + +  K
Sbjct: 243 ATDTIFIK 250


>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 20/209 (9%)

Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350
           VY  K K   L +V+    P E  AL+G SG+GK+++   I R  D       +GS+   
Sbjct: 13  VYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYN 70

Query: 351 GIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE- 407
           G ++        ++R+ I  V Q P     S+Y+N+  G      K I++  +L +A E 
Sbjct: 71  GHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGL---RLKGIKDKQVLDEAVEK 127

Query: 408 -FIGC-LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALDIENEQK 464
              G  + +     L D A+ LS GQ QR+ IAR +L  SP I+LLDE  SALD  +  K
Sbjct: 128 SLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR-VLATSPKIILLDEPTSALDPISAGK 186

Query: 465 IWKVLREQRRGRTTIFASHRL---SAIQD 490
           I + L   +   T +  +  +   S I D
Sbjct: 187 IEETLLGLKDDYTMLLVTRSMQQASRISD 215


>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 76.6 bits (188), Expect = 2e-14
 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 16/208 (7%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRL 356
           K   LK ++      E  AL+G SG GK++    + R  D       +G+V + G ++  
Sbjct: 17  KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76

Query: 357 LSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN 414
            + +  ++R+ +  V Q P     S+Y+N+  G        +++ A+L +A E       
Sbjct: 77  PNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGL---RLAGVKDKAVLDEAVETSLKQAA 133

Query: 415 GYDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
            +D +   L + A+ LS GQ QR+ IAR +     ++LLDE  SALD  +  +I  +L E
Sbjct: 134 IWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193

Query: 472 QRRGRTTIFASHRL---SAIQDADMVFV 496
            R   T I  +H +   S I D    F+
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFL 221


>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 286

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 59/249 (23%), Positives = 122/249 (48%), Gaps = 17/249 (6%)

Query: 287 SVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344
           ++ F +VS+ Y   +  +   + +VN   + G+  A+VG +G+GK+++   I     P +
Sbjct: 2   TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61

Query: 345 GSVEIEGIDLRLLS----LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQN 398
           G+V ++ I +   +    +  +R+ I  V Q P   +   +V   I  G P   +  +  
Sbjct: 62  GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNFKMNLDE 120

Query: 399 AAMLAQAHEFIGCLENGYD-TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
                 AH  +  ++ G+   ++      +S GQ+++IAI   +  +  I++LDE  + L
Sbjct: 121 VK--NYAHRLL--MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176

Query: 458 DIENEQKIWKVLRE--QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEELLKK 514
           D ++++++ ++L+       +T I  SH ++ + + AD V V+ +  IV +   +EL K 
Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236

Query: 515 SGFYAHYHI 523
               A +HI
Sbjct: 237 KKKLADWHI 245


>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 41/223 (18%)

Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356
           Y GK     L+++N T++ GE + ++G SG GKT++ +LI  F     GS+ ++G  +  
Sbjct: 11  YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67

Query: 357 LSLEEIRRFIAWVPQHPIMIA-ASVYDNIAI-----GCPHATRKEIQNAAMLAQAHEFIG 410
              E        V Q+  ++   +V DN+A      G     R EI    ML +    +G
Sbjct: 68  PGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA-HQMLKK----VG 117

Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD-IENEQ------ 463
                   I       LS GQ QR+ IARA+  +  +LLLDE   ALD    EQ      
Sbjct: 118 LEGAEKRYIW-----QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLL 172

Query: 464 KIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
           K+W     Q  G+  +  +H    I++A  VF+  + V++  G
Sbjct: 173 KLW-----QETGKQVLLITHD---IEEA--VFMATELVLLSPG 205


>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 269

 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 32/242 (13%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + F++VSF Y   +  + LK+V+F +  G+  ++VG +G+GK++I  L++      SG +
Sbjct: 8   IVFKNVSFQYQSDASFT-LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66

Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIG-----CPHATRKEIQNAA 400
                 +   + E++R+ I  V Q+P    + + V  ++A G      P+       + A
Sbjct: 67  FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126

Query: 401 -----MLAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMG 454
                ML +A                D   + LS GQ QR+AIA  +  +  +++LDE  
Sbjct: 127 LKQVDMLERA----------------DYEPNALSGGQKQRVAIAGVLALNPSVIILDEAT 170

Query: 455 SALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512
           S LD +  Q +  ++R+       T I  +H LS   +AD V V++   + ++G   E+ 
Sbjct: 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIF 230

Query: 513 KK 514
             
Sbjct: 231 DH 232


>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 76.2 bits (187), Expect = 2e-14
 Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 18/220 (8%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358
           L  ++   +  E  AL+G SG GK++    + R  D       +G ++ EG ++    + 
Sbjct: 20  LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79

Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TRKEIQNAAM---LAQAHEFIGCLE 413
           L E+R+ +  V Q P     SVYDN+A G   A    KE+ +  +   L QA  +    +
Sbjct: 80  LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139

Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473
           N     L   A   S GQ QRI IARA+     ++LLDE  SALD  +  +I + L E +
Sbjct: 140 N-----LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194

Query: 474 RGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELL 512
              T I  +H L  A + +D    L +  ++E G  EE+ 
Sbjct: 195 HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234


>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 305

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 32/218 (14%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS-----GSVEIEGIDLRL--LS 358
           LK V+  +      AL+G SG GK++    + R  D        GSVE++G D+    ++
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120

Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRK--EIQNAAMLA---------QAHE 407
           L E+R+ +  V Q P     S+ +NI+ G     RK  +I N  +LA            E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYG----PRKHGDI-NTGLLARLLGRDDKDAEDE 175

Query: 408 FIG-CLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
            +   L     +D +   L D A+ LS GQ QR+ IAR +  D  ++L+DE  SALD   
Sbjct: 176 LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235

Query: 462 EQKIWKVLREQRRGRTTIFASHRL---SAIQDADMVFV 496
             KI  ++ E     T +  +H +   + I D   VF+
Sbjct: 236 TSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273


>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
           protein UrtE.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 230

 Score = 76.0 bits (188), Expect = 2e-14
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 12/212 (5%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL-RLLSLEEIR 363
           IL+ V+  V  GE   ++G +G GKT++   ++      SGS+ ++G D+ +L   E  R
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74

Query: 364 RFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
             IA+VPQ   I    +V +N+  G     R+      +  + +E    L+       GD
Sbjct: 75  AGIAYVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGD 131

Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIF 480
               LS GQ Q++AIARA++    +LLLDE    +     + I +V+R      G   + 
Sbjct: 132 ----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL 187

Query: 481 ASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511
               L  A + AD  +V+    +V  G  +EL
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAGDEL 219


>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 23/237 (9%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF---YDPCS 344
           +    + F Y   +K   LK ++ ++  G   AL+G +GAGK+   +L+L     Y P  
Sbjct: 5   IEVEDLHFRYKDGTK--ALKGLSLSIPEGSKTALLGPNGAGKS---TLLLHLNGIYLPQR 59

Query: 345 GSVEIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHA--TRKEIQNAA 400
           G V++ G ++   + + +R  +  V Q P   + +++V+D++A G  +    + E++   
Sbjct: 60  GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119

Query: 401 MLAQAHEFIGCLENGYDTILGDGA-VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
             A            +D    D    HLS GQ +R+AIA  +  D  +++LDE  + LD 
Sbjct: 120 EEALK------AVRMWD--FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171

Query: 460 ENEQKIWKVL-REQRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK 514
             ++ + ++L R   +G+T I A+H +  A + AD V VL +  ++ +G    L  +
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228


>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
           Provisional.
          Length = 501

 Score = 75.3 bits (186), Expect = 4e-14
 Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 22/224 (9%)

Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
           SF  +   +PG      L +++F  + G+  AL+G++GAGK+++  ++   Y P +GS+ 
Sbjct: 6   SFDGIGKTFPGVKA---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62

Query: 349 IEGIDLRLLSLEE-IRRFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403
           I+G ++R  S    +   +A + Q     P M   +V +N+ +G        +    +  
Sbjct: 63  IDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNY 119

Query: 404 QAHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462
           +A E    LE+    I  D  + +LS GQ Q + IA+A+ +++ ++  DE  S+L     
Sbjct: 120 EARE---QLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176

Query: 463 QKIWKVLREQR-RGRTTIFASHRLSAIQDADMVFVLHDQVIVEK 505
           +++++V+RE R  GR  ++ SHR+      + +F L D + V K
Sbjct: 177 EQLFRVIRELRAEGRVILYVSHRM------EEIFALCDAITVFK 214



 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LEEIRRFIA 367
           ++F+V+ GE + L G  GAG++ +  L+       +G V ++G  + + S  + IR  I 
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331

Query: 368 WVP----QHPIMIAASVYDNIAIGCPHATRKE---IQNAAMLAQAHEFIGCLE----NGY 416
             P       I+   SV DNI I       +    I N      A  FI  L     +  
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRG 475
             I     ++LS G  Q+  + R + +D  ++LLDE    +D+  + +I+ V+ E   +G
Sbjct: 392 QLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQG 446

Query: 476 RTTIFASHRL 485
              +F S  L
Sbjct: 447 VAVLFVSSDL 456


>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
            model describes the photoreceptor protein (rim protein)
            in eukaryotes. It is the member of ABC transporter
            superfamily. Rim protein is a membrane glycoprotein which
            is localized in the photoreceptor outer segment discs.
            Mutation/s in its genetic loci is implicated in the
            recessive Stargardt's disease.
          Length = 2272

 Score = 75.0 bits (184), Expect = 5e-14
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 20/222 (9%)

Query: 278  RTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL 337
            R  P  V G      V    P  S R  +  +N T    +  A +G +GAGKT+  S++ 
Sbjct: 920  RELPGLVPGVCVKNLVKIFEP--SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILT 977

Query: 338  RFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRK-- 394
                P SG+V + G D+   +L+ +R+ +   PQH I+    +V ++I        R   
Sbjct: 978  GLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036

Query: 395  --EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
              +++  AML          + G      + A  LS G  +++++A A + D+ +++LDE
Sbjct: 1037 EAQLEMEAMLE---------DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087

Query: 453  MGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMV 494
              S +D  + + IW +L + R GRT I ++H +    +AD++
Sbjct: 1088 PTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EADLL 1126



 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 33/204 (16%)

Query: 296  VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLR 355
            VY G S  ++   +   V+PGE   L+G +GAGKT+ F ++       SG   + G  + 
Sbjct: 1946 VYSGTSSPAV-DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI- 2003

Query: 356  LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPH---------ATRKEIQNAAMLA--- 403
            L ++ ++ + + + PQ   +      D++  G  H            +EI+  A  +   
Sbjct: 2004 LTNISDVHQNMGYCPQFDAI------DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057

Query: 404  -QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462
                 +   L   Y           S G  ++++ A A++   P++LLDE  + +D +  
Sbjct: 2058 LGLSLYADRLAGTY-----------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106

Query: 463  QKIWKVLRE-QRRGRTTIFASHRL 485
            + +W  +    R GR  +  SH +
Sbjct: 2107 RMLWNTIVSIIREGRAVVLTSHSM 2130


>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
           protein OppF; Provisional.
          Length = 331

 Score = 74.7 bits (184), Expect = 5e-14
 Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 31/222 (13%)

Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS---LEEIRRF 365
           V   +  GET+ +VG+SG GK++    I+       G V   G DL  +       +R  
Sbjct: 40  VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSD 99

Query: 366 IAWVPQHPIMIAASVYDNIAIG----------CPHATRKEIQN--AAMLAQAHEFIGCLE 413
           I  + Q P+   AS+   + IG           P  +R+E+++   AM+ +    +G L 
Sbjct: 100 IQMIFQDPL---ASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK----VGLLP 152

Query: 414 NGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
           N     L +   H  S GQ QRI IARA++ +  +++ DE  SALD+  + ++  +L++ 
Sbjct: 153 N-----LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207

Query: 473 RR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
           +R  G + IF +H L+ ++  +D V V++    VE G ++E+
Sbjct: 208 QREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249


>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 74.4 bits (183), Expect = 7e-14
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 20/210 (9%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--PCS- 344
           +  R +SF Y        L +++   +  +  AL+G SG GK++    + R  D  P + 
Sbjct: 7   MEARGLSFFYGDFQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63

Query: 345 --GSVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA 400
             G + ++G ++    + + E+RR +  V Q P     S+++N+A G        +++ A
Sbjct: 64  VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGL---RVNGVKDKA 120

Query: 401 MLAQAHEFIGCLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGS 455
            LA+  E    L +   +D +   L + A+ LS GQ QR+ IARA+  +  +LL+DE  S
Sbjct: 121 YLAERVE--RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS 178

Query: 456 ALDIENEQKIWKVLREQRRGRTTIFASHRL 485
           ALD    QKI +++ E +   T I  +H +
Sbjct: 179 ALDPIATQKIEELIHELKARYTIIIVTHNM 208


>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 74.3 bits (182), Expect = 8e-14
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 17/238 (7%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS- 346
           +  R V+F Y    K  +LKN+N      +  A++G SG GK+++   + R  D  SG+ 
Sbjct: 5   IKIRGVNFFY---HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61

Query: 347 ------VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPH---ATRKEIQ 397
                 ++ E I    L +  +R+ +  V Q P     S++DN+A G P     T +   
Sbjct: 62  LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG-PRMLGTTAQSRL 120

Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
           +  +     +    L +     L    + LS GQ QR+ IAR +  +  ++L+DE  SAL
Sbjct: 121 DEVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178

Query: 458 DIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKK 514
           D  +  +I ++++E ++  T    +H +  A + +D    L    +VE G   E+  +
Sbjct: 179 DPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236


>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 327

 Score = 74.2 bits (183), Expect = 9e-14
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 26/222 (11%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI--- 362
           L  V+FT++ G+T+A+VG+SG GK+++  L+     P  G +  +G DL     E     
Sbjct: 31  LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90

Query: 363 RRFIAWVPQHPI-------MIAASVYDNIAIGC--PHATRKEIQNAAMLAQAHEFIGCLE 413
           R+ I  V Q+P         +   + + + I      A R+E +  AM+A+    +G   
Sbjct: 91  RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE-KALAMMAK----VGLRP 145

Query: 414 NGYDTILGDGAVHL-STGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR-- 470
             YD        H+ S GQ QRIAIARA++ D  +++ DE  SALD+  + ++  ++   
Sbjct: 146 EHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200

Query: 471 EQRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
           +Q  G + +F SH LS ++  AD V V++    VEKG  E++
Sbjct: 201 QQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242


>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
           Provisional.
          Length = 242

 Score = 73.9 bits (182), Expect = 1e-13
 Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 30/236 (12%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
           S+    ++  Y G  +   L ++      GET+ L+G SGAGK+S+  ++     P SG+
Sbjct: 2   SIQLNGINCFY-GAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58

Query: 347 VEIEGIDLRLLS------LEEIRRFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEI 396
           + I G             + E+RR +  V Q     P +   +V  N+ I  P       
Sbjct: 59  LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNL-IEAPCRVLGLS 114

Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGA----VHLSTGQIQRIAIARAILKDSPILLLDE 452
           ++ A+ A+A + +  L       L   A    +HLS GQ QR+AIARA++ +  +LL DE
Sbjct: 115 KDQAL-ARAEKLLERLR------LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167

Query: 453 MGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKG 506
             +ALD E   +I  ++RE    G T +  +H +  A + A  V  + +  IVE+G
Sbjct: 168 PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223


>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
           This model describes the ATP binding subunits of nitrate
           transport in bacteria and archaea. This protein belongs
           to the ATP-binding cassette (ABC) superfamily. It is
           thought that the two subunits encoded by ntrC and ntrD
           form the binding surface for interaction with ATP. This
           model is restricted in identifying ATP binding subunit
           associated with the nitrate transport. Nitrate
           assimilation is aided by other proteins derived from the
           operon which among others include products of ntrA - a
           regulatory protein; ntrB - a hydropbobic transmembrane
           permease and narB - a reductase.
          Length = 230

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 29/207 (14%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           LK VN T+Q GE I+L+G SG GK+++ +LI     P SG V +EG  +     + +  F
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 366 IAWVPQHPIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
                 + ++   +V +NI  A+        + +  A++ +    +G L    D   G  
Sbjct: 61  ----QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVG-LTEAADKRPGQ- 114

Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI---ENEQ----KIWKVLREQRRGR 476
              LS G  QR+AIARA+     +LLLDE   ALD     N Q    +IW     +    
Sbjct: 115 ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW-----EEHRV 166

Query: 477 TTIFASHRLSAIQDADMVFVLHDQVIV 503
           T +  +H      D D   +L D+V++
Sbjct: 167 TVLMVTH------DVDEALLLSDRVVM 187


>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
           subunit; Provisional.
          Length = 257

 Score = 73.5 bits (180), Expect = 1e-13
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 25/227 (11%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLL------- 357
           +LK V+     G+ I+++G SG+GK++    I     P  GS+ + G  + L+       
Sbjct: 20  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79

Query: 358 ------SLEEIRRFIAWVPQH-PIMIAASVYDNI---AIGCPHATRKEIQNAAMLAQAHE 407
                  L  +R  +  V QH  +    +V +N+    I     +++E +  A+   A  
Sbjct: 80  KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAK- 138

Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467
            +G  E       G   VHLS GQ QR++IARA+  +  +LL DE  SALD E   ++ +
Sbjct: 139 -VGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193

Query: 468 VLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
           ++++    G+T +  +H +  A   +  V  LH   I E+G  E+L 
Sbjct: 194 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240


>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
           protein; Provisional.
          Length = 648

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 26/227 (11%)

Query: 291 RSVSFVYP-GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-PCSGSVE 348
           + +   YP G+ +  +LK ++  +  GE +A+VG SG+GK+++ + IL   D P SG+  
Sbjct: 8   KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYR 66

Query: 349 IEGIDLRLL---SLEEIRR----FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM 401
           + G D+  L   +L ++RR    FI    ++ ++   +   N+ +   +A    ++    
Sbjct: 67  VAGQDVATLDADALAQLRREHFGFI--FQRYHLLSHLTAAQNVEVPAVYAG---LERKQR 121

Query: 402 LAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
           L +A E +  L       L D   +    LS GQ QR++IARA++    ++L DE   AL
Sbjct: 122 LLRAQELLQRLG------LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175

Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503
           D  + +++  +L + + RG T I  +H       A+ V  + D  IV
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222


>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 286

 Score = 73.4 bits (180), Expect = 2e-13
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD---PC--SGSVEIEGIDLRLLSLE 360
           +K VN  +      A++G SG GK++    I R  D    C  +G++  +G D+     +
Sbjct: 55  VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114

Query: 361 EI--RRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENGY 416
           E+  R+ I  V Q P     S++DNIA G P  H    + Q   ++ ++       +   
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYG-PRLHGINDKKQLEEIVEKSLRKAALWDEVS 173

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476
           D  L   A+ LS GQ QR+ +AR +  +  ILLLDE  SALD +   KI  +++E R   
Sbjct: 174 DR-LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232

Query: 477 TTIFASHRL---SAIQDADMVFVLHDQVIVE 504
           T +  +H +   S + D  M F  ++ V+VE
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFF--YEGVLVE 261


>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
           ATP-binding protein.  Members of this family are the
           ATP-binding protein of a conserved four gene ABC
           transporter operon found next to ectoine unilization
           operons and ectoine biosynthesis operons. Ectoine is a
           compatible solute that protects enzymes from high
           osmolarity. It is released by some species in response
           to hypoosmotic shock, and it is taken up by a number of
           bacteria as a compatible solute or for consumption. This
           family shows strong sequence similiarity to a number of
           amino acid ABC transporter ATP-binding proteins.
          Length = 252

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 38/250 (15%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           V F  V+  +      ++L  +NF+V  GE +AL+G SG+GK++I  +++       G +
Sbjct: 1   VRFSDVTKRF---GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57

Query: 348 EIEGIDLRLLS-------------LEEIRRFIAWVPQH----PIMIAASVYDNIAIGCPH 390
           ++EG  L  +              L ++R  I  V Q     P     +V DN+      
Sbjct: 58  QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK---TVLDNVTEAPVL 114

Query: 391 ATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSP 446
                +  A    +A E +  +       L D A H    LS GQ QR+AIARA+     
Sbjct: 115 V--LGMARAEAEKRAMELLDMVG------LADKADHMPAQLSGGQQQRVAIARALAMRPK 166

Query: 447 ILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIV 503
           ++L DE+ SALD E   ++  V+R        T +  +H +   ++ AD V       IV
Sbjct: 167 VMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226

Query: 504 EKGVHEELLK 513
           E+G  +E+ +
Sbjct: 227 EQGKPDEIFR 236


>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 268

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 16/228 (7%)

Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350
           +Y G+ KR++  +++  ++     AL+G SG GK++    I R  D        G +  E
Sbjct: 29  IYYGE-KRAV-NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYE 86

Query: 351 GIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408
           G+++    +++  +RR I  V Q P     S+Y+NI     +A  +     ++L +  E 
Sbjct: 87  GLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGER---RKSVLDEIVEE 143

Query: 409 IGCLENGYDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
                  +D +   L   A+ LS GQ QR+ IAR +     +LLLDE  SALD  +  KI
Sbjct: 144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203

Query: 466 WKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELL 512
            +++ E +   + I  +H +  A++ +D      +  +VE    E++ 
Sbjct: 204 EELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251


>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
           YejF; Provisional.
          Length = 529

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 36/250 (14%)

Query: 281 PSPVLGSVSFRSVSF-VYPGKSKR-----SILKNVNFTVQPGETIALVGDSGAGKTSIFS 334
           P+  L  V    V+F +  G  KR      ++KN++FT++PGET+ LVG+SG+GK++   
Sbjct: 271 PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGL 330

Query: 335 LILRFYDPCSGSVEIEGIDLRLLSLEE---IRRFIAWVPQHP-------IMIAASVYDNI 384
            +LR      G +  +G  L  L+  +   +R  I  V Q P       + +   + + +
Sbjct: 331 ALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389

Query: 385 AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH-----LSTGQIQRIAIAR 439
            +  P  +  + +   +           E G D        H      S GQ QRIAIAR
Sbjct: 390 RVHQPTLSAAQREQQVIAVME-------EVGLDP----ETRHRYPAEFSGGQRQRIAIAR 438

Query: 440 AILKDSPILLLDEMGSALDIENEQKIWKVLR--EQRRGRTTIFASHRLSAIQD-ADMVFV 496
           A++    +++LDE  S+LD   + +I  +L+  +Q+     +F SH L  ++     V V
Sbjct: 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIV 498

Query: 497 LHDQVIVEKG 506
           L    +VE+G
Sbjct: 499 LRQGEVVEQG 508



 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 46/253 (18%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL-ILRFYDPC-- 343
           SV+FR        ++ R+++ +V+  ++ GET+ALVG+SG+GK S+ +L ILR   P   
Sbjct: 12  SVAFRQ------QQTVRTVVNDVSLQIEAGETLALVGESGSGK-SVTALSILRLL-PSPP 63

Query: 344 ----SGSVEIEGIDLRLLSLEEIRRF----IAWVPQHPIMIAASVYDNIAIGCPHATRKE 395
               SG +   G  L   S + +R      IA + Q P M++ +    +          E
Sbjct: 64  VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP-MVSLNPLHTL----------E 112

Query: 396 IQNAAML---------AQAHEFIGCLE----NGYDTILGDGAVHLSTGQIQRIAIARAIL 442
            Q   +L         A   E + CL+          L D    LS G+ QR+ IA A+L
Sbjct: 113 KQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172

Query: 443 KDSPILLLDEMGSALDIENEQKIWKVLREQRR--GRTTIFASHRLSAI-QDADMVFVLHD 499
               +L+ DE  +ALD+  + +I ++LRE ++      +F +H LS + + AD V V+ +
Sbjct: 173 TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232

Query: 500 QVIVEKGVHEELL 512
              VE+     L 
Sbjct: 233 GRCVEQNRAATLF 245


>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein. 
          Length = 617

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 62/216 (28%), Positives = 109/216 (50%), Gaps = 23/216 (10%)

Query: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP----CSGSVEIEGIDLR 355
           + ++ +LKNV+   +PGE +A++G SGAGKT++ +  L F  P     SGSV + G    
Sbjct: 35  RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMN-ALAFRSPKGVKGSGSVLLNG---M 90

Query: 356 LLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGC----PHATRKEIQNAAMLAQAHEFIG 410
            +  +E+R   A+V Q  + I   +V +++        P    K+ +    + +  + +G
Sbjct: 91  PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKK-EKRERVDEVLQALG 149

Query: 411 CLENGYDTILGDGAVH--LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468
            L    +T +G       LS G+ +R+A A  +L D P+L  DE  S LD      + +V
Sbjct: 150 -LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208

Query: 469 LRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503
           L+   ++G+T I   H+ S+      +F L D++I+
Sbjct: 209 LKGLAQKGKTIICTIHQPSS-----ELFELFDKIIL 239


>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 283

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 19/220 (8%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--IDLRLLSLEEIR 363
           LK +N  ++ GE  A++G +GAGK+++F  +     P SG +  +G  ID     L ++R
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81

Query: 364 RFIAWVPQHP--IMIAASVYDNIAIGCPHAT--RKEIQNAAMLAQAHEFIGCLENGYDTI 419
             +  V Q P   + +ASVY +++ G  +      E++     A     I  L++     
Sbjct: 82  ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD----- 136

Query: 420 LGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR--GR 476
                 H LS GQ +R+AIA  ++ +  +L+LDE  + LD     +I K+L E ++  G 
Sbjct: 137 ---KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193

Query: 477 TTIFASHRLSAIQ-DADMVFVLHD-QVIVEKGVHEELLKK 514
           T I A+H +  +    D VFV+ + +VI++    E   +K
Sbjct: 194 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233


>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 285

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 20/205 (9%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRLLSLE 360
           L +V+  +   +  A++G SG GK++    I R  D        G +   G ++    ++
Sbjct: 55  LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114

Query: 361 EI--RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQ--NAAMLAQAHEFI--GCLEN 414
            +  RR I  V Q P     S+YDN+A G       +IQ  +  +  +  E +    L +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGL------KIQGYDGDIDERVEESLRRAALWD 168

Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
                L    + LS GQ QR+ IARAI  D  ++L+DE  SALD     KI  ++ E   
Sbjct: 169 EVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE 228

Query: 475 GRTTIFASHRL---SAIQDADMVFV 496
             T +  +H +   + I D   VF+
Sbjct: 229 EYTVVIVTHNMQQAARISDKTAVFL 253


>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 254

 Score = 72.4 bits (177), Expect = 3e-13
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 9/188 (4%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--------IDLRLL 357
           L N+N  +      AL+G SG GK++    + R  D   G ++IEG        I     
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81

Query: 358 SLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417
            + E+RR I  V Q P     S+YDNI+ G      K+ +    + +       L N   
Sbjct: 82  DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK 141

Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRT 477
             L   A+ LS GQ QR+ IAR +  +  ++L+DE  SALD  +  KI +++   +   T
Sbjct: 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYT 201

Query: 478 TIFASHRL 485
            I  +H +
Sbjct: 202 IIIVTHNM 209


>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 72.0 bits (176), Expect = 3e-13
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD---PC--SGSVEIEGIDLRL 356
           ++  LKNV+  +      AL+G SG GK++    + R  D    C   G V IEG D+  
Sbjct: 24  EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83

Query: 357 LSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCPH---ATRKEIQNAAMLAQAHEFIGC 411
             ++  E+R+ +  V Q P     S+YDN+A G P    A +K++    ++  A      
Sbjct: 84  PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG-PRIHGANKKDLD--GVVENALRSAAL 140

Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
            +   D  L   A+ LS GQ QR+ IAR +     I+L DE  SALD  +  +I  ++  
Sbjct: 141 WDETSDR-LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199

Query: 472 QRRGRTTIFASHRL 485
            ++  T +  +H +
Sbjct: 200 LKKDYTIVIVTHNM 213


>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter.  This model
           describes cyclic peptide transporter in bacteria.
           Bacteria have elaborate pathways for the production of
           toxins and secondary metabolites. Many such compounds,
           including syringomycin and pyoverdine are synthesized on
           non-ribosomal templates consisting of a multienzyme
           complex. On several occasions the proteins of the
           complex and transporter protein are present on the same
           operon. Often times these compounds cross the biological
           membrane by specific transporters. Syringomycin is an
           amphipathic, cylclic lipodepsipeptide when inserted into
           host causes formation of channels, permeable to variety
           of cations. On the other hand, pyoverdine is a cyclic
           octa-peptidyl dihydroxyquinoline, which is efficient in
           sequestering iron for uptake.
          Length = 555

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 100/502 (19%), Positives = 185/502 (36%), Gaps = 68/502 (13%)

Query: 39  GERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLM 98
           G  +I  ++  +  KI+       + RG   +  +L  D ++I A + I   I +   + 
Sbjct: 81  GMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIF 140

Query: 99  GFGAMCM------MFVISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSD 152
            F    +      MF I+I   +I  +   L  M   KF          DE+   N  + 
Sbjct: 141 FFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAAR-----DEEDAFNEHTH 195

Query: 153 MIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIV--- 209
            I           G + ++++ I+       F   A+  +      +  +   IFI    
Sbjct: 196 AIAF---------GAKELKIHGIRR----LSFAHGAIQESANNIADLHIIEILIFIAAEN 242

Query: 210 -------FLIGAHYVATAEMPR---GKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLR 259
                   LIG    A A         ++ FV+        +   +  +  ++QA  + +
Sbjct: 243 FGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQ 302

Query: 260 RLRELIVCKLDISSP----------ISSRTFPSPVLGSVSFRSVSFVYPGKSKRS--ILK 307
           RL +        + P                    + S+  + V              L 
Sbjct: 303 RLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG 359

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIA 367
            ++  +  G+ + +VG++G GK+++  L    Y P  G + ++G  +   S ++ R   +
Sbjct: 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419

Query: 368 WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF---IGCLENGYDTILGDGA 424
                 I     ++D++ IG        + NA    Q  E    +   + G+ T      
Sbjct: 420 -----AIFADFHLFDDL-IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-----T 468

Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFAS 482
             LSTGQ +R+A+  A L+D PILL DE  +  D   ++  ++ L    +R+G+T I  S
Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528

Query: 483 HRLSAIQDADMVFVLHDQVIVE 504
           H     + AD +  L    IV+
Sbjct: 529 HDDQYFELADQIIKLAAGCIVK 550


>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 31/206 (15%)

Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP-----CSGSVEIE 350
           VY GK +   +K ++   +  +  AL+G SG+GK++    + R  D       +G +   
Sbjct: 28  VYYGKKEA--IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYR 85

Query: 351 GIDLRL--LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQ----------- 397
           GID+    +++ E+R+ I  V Q P   A S+Y+NI      A  K+ +           
Sbjct: 86  GIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLK 145

Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
            AA+  Q  +            L   A+ LS GQ QR+ IARAI     ILL+DE  SAL
Sbjct: 146 QAALWDQVKD-----------DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194

Query: 458 DIENEQKIWKVLREQRRGRTTIFASH 483
           D  +  ++ + + E ++  T I  +H
Sbjct: 195 DPISTMQLEETMFELKKNYTIIIVTH 220


>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
           Reviewed.
          Length = 240

 Score = 72.0 bits (177), Expect = 4e-13
 Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 28/238 (11%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + F++VS  + G ++  +L N++  +  GE + ++G SG+GK+++   I +  +  SG +
Sbjct: 2   IEFKNVSKHF-GPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58

Query: 348 EIEGIDLR--LLSLEEIRRFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAM 401
            ++G+ +    +    IR+    V Q     P + A    +N+  G P   R   +  A 
Sbjct: 59  IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA---LENVMFG-PLRVRGASKEEAE 114

Query: 402 LAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
             QA E +  +       L + A H    LS GQ QR+AIARA+     ++L DE  SAL
Sbjct: 115 -KQARELLAKVG------LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167

Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD--ADMVFVLHDQVIVEKGVHEELL 512
           D E   ++ KV+++    G T +  +H +   +   + ++F+   + I E G  + L+
Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR-IAEDGDPQVLI 224


>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 329

 Score = 70.9 bits (173), Expect = 7e-13
 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 30/217 (13%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS---- 346
           R+ +F Y  ++K  +L ++N  ++  +  A +G SG GK++    + +  D   G+    
Sbjct: 84  RNFNFWYMNRTKH-VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEG 142

Query: 347 -VEIEGIDLRL--LSLEEIRRFIAWVPQHPIMIAASVYDNIAIG-----------CPHAT 392
            +   G + R   +S  E+R  I  V Q P     S++DN+A G                
Sbjct: 143 EIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIV 202

Query: 393 RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
            K +++AA+  +  + +    N            LS GQ QR+ IARAI  +  +LL+DE
Sbjct: 203 EKSLKSAALWDEVKDDLDKAGNA-----------LSGGQQQRLCIARAIALEPEVLLMDE 251

Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQ 489
             SALD     KI +++ E ++  + I  +H ++  Q
Sbjct: 252 PTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ 288


>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 18/232 (7%)

Query: 287 SVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344
            ++ ++VS+ Y   +  +   L +VN T++ G   A +G +G+GK++I  L+   + P  
Sbjct: 2   GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61

Query: 345 GSVEIEGIDLRLLS----LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQN 398
           GSV ++   +   S    +++IR+ +  V Q P   +   +V  ++A G P       + 
Sbjct: 62  GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEE 120

Query: 399 AAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSA 456
           A  LA+     +G  E+ ++         LS GQ++R+AIA  IL   P IL+LDE  + 
Sbjct: 121 AEALAREKLALVGISESLFEK----NPFELSGGQMRRVAIA-GILAMEPKILVLDEPTAG 175

Query: 457 LDIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
           LD +  +++  + ++  + G T +  +H +  + + AD V+VL    +V  G
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227


>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 260

 Score = 70.8 bits (174), Expect = 9e-13
 Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 24/210 (11%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--P--- 342
           +  R+++F Y GK     LKN+N  +   +  A +G SG GK+++     R Y+  P   
Sbjct: 14  IQVRNLNFYY-GKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70

Query: 343 CSGSVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA 400
             G + ++G ++      +  +R  +  V Q P     S+YDNIA G     +  +  A 
Sbjct: 71  AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEK--LSRAE 128

Query: 401 M-------LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453
           M       L +A      L N     L      LS GQ QR+ IAR I     +LLLDE 
Sbjct: 129 MDERVEWALTKA-----ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183

Query: 454 GSALDIENEQKIWKVLREQRRGRTTIFASH 483
            SALD  +  +I +++ E ++  T +  +H
Sbjct: 184 CSALDPISTGRIEELITELKQDYTVVIVTH 213


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score = 70.7 bits (173), Expect = 9e-13
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 41/238 (17%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG----------IDLR 355
           ++N++F++Q GET+A+VG+SG+GK+     ++R  +   G V+ +           I+L 
Sbjct: 32  VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91

Query: 356 LLSLEEIRRF----IAWVPQHPI-----------MIAASVYDNIAIGCPHATR--KEIQN 398
             S  ++R      +A + Q P+            IA S+  +       A    K + +
Sbjct: 92  EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151

Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
              + +A            TIL      LS G  QR+ IA A+     +L+ DE  +ALD
Sbjct: 152 QVRIPEAQ-----------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200

Query: 459 IENEQKIWKVLR--EQRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
           +  + +I ++++  ++      IF +H +  + + AD V V++    VE G  E++  
Sbjct: 201 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258



 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 22/215 (10%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS---LEEI 362
           ++ V+F + PGET++LVG+SG+GK++    +LR  +   G +   G  +  LS   L+ +
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399

Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCP-------HATRKEIQNAAMLAQAHEFIGCL-EN 414
           RR I ++ Q P    AS+     +G         H        AA +A   E +G L E+
Sbjct: 400 RRDIQFIFQDPY---ASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH 456

Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
            +           S GQ QRI IARA+  +  +++ DE  SALD+    +I  +L + +R
Sbjct: 457 AWRY-----PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511

Query: 475 --GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506
             G   +F SH ++ ++  +  V V++   IVE G
Sbjct: 512 DFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546


>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
           Provisional.
          Length = 340

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 18/210 (8%)

Query: 282 SPVLGSVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF 339
           + + GS+S  ++      KS   ++++  ++FTV  GE   L+G +GAGK++I  +IL  
Sbjct: 31  ASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90

Query: 340 YDPCSGSVEIEGIDL----RLLSLEEIRRFIAWVPQHPIM-IAASVYDNIAIGCPHATRK 394
             P +G + + G+ +    RL      R  I  VPQ   + +  +V +N+ +   +    
Sbjct: 91  TSPDAGKITVLGVPVPARARL-----ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145

Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454
             +  A++    EF   LE+  D  + D    LS G  +R+ +ARA++ D  +L+LDE  
Sbjct: 146 TREIEAVIPSLLEF-ARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPT 200

Query: 455 SALDIENEQKIWKVLRE-QRRGRTTIFASH 483
           + LD      IW+ LR    RG+T +  +H
Sbjct: 201 TGLDPHARHLIWERLRSLLARGKTILLTTH 230


>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
           Provisional.
          Length = 510

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 12/203 (5%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           LK+VN TV PGE  AL+G++GAGK+++  ++   ++P  G++ I  I+   L  +   + 
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80

Query: 366 -IAWVPQHPIMI-AASVYDNIAIGCPHATRKE-----IQNAAMLAQAHEFIGCLENGYDT 418
            I  + Q   +I   +V +N+ IG  H T+K      I    M  +A   +  L  G   
Sbjct: 81  GIGIIYQELSVIDELTVLENLYIG-RHLTKKVCGVNIIDWREMRVRAAMML--LRVGLKV 137

Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRT 477
            L +   +LS    Q + IA+ ++ D+ ++++DE  S+L  +    ++ ++ + R+ G  
Sbjct: 138 DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTA 197

Query: 478 TIFASHRLSAIQD-ADMVFVLHD 499
            ++ SH+L+ I+   D   V+ D
Sbjct: 198 IVYISHKLAEIRRICDRYTVMKD 220



 Score = 38.2 bits (89), Expect = 0.005
 Identities = 40/206 (19%), Positives = 87/206 (42%), Gaps = 27/206 (13%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LE 360
            R  +++++F+V  GE +   G  G+G+T + + +        G + + G D+   S L+
Sbjct: 275 DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLD 334

Query: 361 EIRRFIAWVPQ----HPIMIAASVYDNIAI-------------GCPHATRKEIQNAAMLA 403
            +++ +A++ +    +      S+  N+AI             G  H    + Q  A   
Sbjct: 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE--VDEQRTAENQ 392

Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
           +    + C        +      LS G  Q++ I++ +     +++ DE    +D+  + 
Sbjct: 393 RELLALKC------HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKA 446

Query: 464 KIWKVLRE-QRRGRTTIFASHRLSAI 488
           +I+KV+R+    G+  +  S  L  I
Sbjct: 447 EIYKVMRQLADDGKVILMVSSELPEI 472


>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR---FYDPC- 343
           +  R+++  Y  K     L +++  +      A +G SG GK+++     R     D C 
Sbjct: 26  LEVRNLNLFYGDKQ---ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82

Query: 344 -SGSVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKE-IQNA 399
             G + ++G ++  + + + E+RR +  V Q P     S+Y+N+  G     R + I N 
Sbjct: 83  IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG----LRLQGINNR 138

Query: 400 AMLAQAHEFIGCLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454
            +L +A E    L     +D +   L + A  LS GQ QR+ IARAI  +  +LLLDE  
Sbjct: 139 RVLDEAVER--SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196

Query: 455 SALDIENEQKIWKVLREQRRGRTTIFASH 483
           SALD  +  KI +++ E +   T +  +H
Sbjct: 197 SALDPISTLKIEELITELKSKYTIVIVTH 225


>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 276

 Score = 69.7 bits (170), Expect = 2e-12
 Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 13/224 (5%)

Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG-----SVEIEGID 353
           G + +++L  V+         +L+G +G+GKT+    + R  D  SG      V + G  
Sbjct: 30  GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS 89

Query: 354 L-RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC-PH--ATRKEIQNAAMLAQAHEFI 409
           +     + E RR +  + Q P     S+ DN+  G   H    RKE +    +AQA    
Sbjct: 90  IFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG---VAQARLTE 146

Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
             L +     L D    LS GQ Q + +AR +  +  +LLLDE  SALD    +KI + +
Sbjct: 147 VGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI 206

Query: 470 REQRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
           R      T I  +H L+ A + +D   +  D  +VE+G  E+L 
Sbjct: 207 RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250


>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
          Length = 306

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 15/200 (7%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           + FR+V   Y     + ++  ++F VQ GE   L+G +GAGKT+   ++L    P +GS+
Sbjct: 8   IDFRNVEKRY---GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64

Query: 348 EI--EGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQ 404
            +  E +  R       R+ +  VPQ   +    +V +N+ +   +         A++  
Sbjct: 65  SLCGEPVPSR---ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPP 121

Query: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464
             EF   LEN  D  +G+    LS G  +R+ +ARA++ D  +L+LDE  + LD +    
Sbjct: 122 LLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176

Query: 465 IWKVLRE-QRRGRTTIFASH 483
           +W+ LR    RG+T +  +H
Sbjct: 177 MWERLRSLLARGKTILLTTH 196


>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
           protein; Provisional.
          Length = 265

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 15/223 (6%)

Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358
           G  K ++ +N+   +  G   A++G +G GK+++   + R   P  G V ++G  ++  +
Sbjct: 16  GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA 75

Query: 359 LEEIRRFIAWVPQHPIMIA-ASVYDNIAIG-CPHA---TRKEIQNAAMLAQAHEFIGCLE 413
            +E+ R I  + Q+       +V + +A G  PH    TR   ++   + +A +  G   
Sbjct: 76  SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-- 133

Query: 414 NGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
               T L D +V  LS GQ QR  IA  + +++ I+LLDE  + LDI ++  + ++L E 
Sbjct: 134 ----THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSEL 189

Query: 473 RR--GRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
            R  G T     H L+ A + A  +  L +  IV +G  +E++
Sbjct: 190 NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232


>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 249

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 6/186 (3%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL-RLLSL 359
           LK++N  +   +  AL+G SG GK+++   + R  D       +G + ++G D+   + +
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 360 EEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419
            ++R  +  V Q P     S+Y+N+A G      K+ +    + +       L +     
Sbjct: 79  ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDR 138

Query: 420 LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTI 479
           L   A  LS GQ QR+ IAR I  +  ++L+DE  SALD     KI +++ E ++  T +
Sbjct: 139 LKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIV 198

Query: 480 FASHRL 485
             +H +
Sbjct: 199 IVTHSM 204


>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 21/195 (10%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL--------- 356
           L ++  ++      AL+G SG GK+++     R  D   G   I G D+           
Sbjct: 22  LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG-CRITG-DILYNGENIMDSG 79

Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG- 415
             +  +RR I  V Q P     S+Y+N+A G P       +N   L    E    L+   
Sbjct: 80  ADVVALRRKIGMVFQRPNPFPKSIYENVAYG-PRI--HGEKNKKTLDTIVE--KSLKGAA 134

Query: 416 -YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
            +D +   L D A+ LS GQ QR+ IAR +  +  ++L+DE  SALD     KI  ++ +
Sbjct: 135 LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194

Query: 472 QRRGRTTIFASHRLS 486
            ++  T I  +H + 
Sbjct: 195 LKKEYTVIIVTHNMQ 209


>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
           subunit; Provisional.
          Length = 265

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 28/239 (11%)

Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
           + R+VSF  PG   R++L  ++ T   G+   L+G +G+GK+++  ++ R   P  G + 
Sbjct: 13  ALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69

Query: 349 IEGIDLRLLSLEEIRRFIAWVPQH-PIMIAASVYDNIAIG-CP-H--------ATRKEIQ 397
           ++   L   S +   R +A++PQ  P     +V + +AIG  P H        A R++++
Sbjct: 70  LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE 129

Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
            A  L         L +            LS G+ QR  IA  + +DS  LLLDE  SAL
Sbjct: 130 EAISLVGLKPLAHRLVDS-----------LSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178

Query: 458 DIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513
           DI ++  +  ++    Q RG T I   H ++ A +  D +  L    ++ +G   EL++
Sbjct: 179 DIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237


>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
           protein; Provisional.
          Length = 369

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 44/226 (19%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
           SV+ R+V+  Y       I K++N  +  GE +  VG SG GK+++  +I    D  SG 
Sbjct: 3   SVTLRNVTKAYGDVV---ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59

Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQ----HPIMIAASVYDNIAIG--CPHATRKEI---- 396
           + I     R+  +    R +  V Q    +P +   SV +N++ G     A ++EI    
Sbjct: 60  LFIGEK--RMNDVPPAERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEEINQRV 114

Query: 397 -QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGS 455
            Q A +L  AH            +L      LS GQ QR+AI R ++ +  + LLDE  S
Sbjct: 115 NQVAEVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162

Query: 456 ALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501
            LD          LR Q R   +     RL       M++V HDQV
Sbjct: 163 NLD--------AALRVQMRIEIS-----RLHKRLGRTMIYVTHDQV 195


>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
           protein; Provisional.
          Length = 241

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL-EE 361
           R ++++V+ TV  GE + L+G +GAGKT+ F +++      +G++ I+  D+ LL L   
Sbjct: 16  RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75

Query: 362 IRRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
            RR I ++PQ   I    SVYDN+        R ++       +A+E    +E  +   L
Sbjct: 76  ARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANEL---MEEFHIEHL 130

Query: 421 GDG-AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473
            D     LS G+ +R+ IARA+  +   +LLDE  + +D  +   I +++   R
Sbjct: 131 RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184


>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 27/237 (11%)

Query: 293 VSFVY--PGKSKRSI-LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349
           VS+ Y    +S   + L +VN  V+ GE + ++G +G+GK++I   +     P  G V +
Sbjct: 10  VSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV 69

Query: 350 EGIDLRLLS-LEEIRRFIAWVPQHP--IMIAASVYDNIAIG------CPHATRKEIQNAA 400
           +G+D      L +IR     V Q+P   ++A  V +++A G       P   R+ +  + 
Sbjct: 70  DGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESL 129

Query: 401 MLAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
                +E+               A H LS GQ QR+AIA  +      ++ DE  + LD 
Sbjct: 130 KKVGMYEY------------RRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177

Query: 460 ENEQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514
              +++   ++E  ++ G T I  +H +    +AD + V+    +V +G  +E+ K+
Sbjct: 178 SGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234


>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 68.5 bits (167), Expect = 4e-12
 Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 26/219 (11%)

Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341
             ++ ++  + +SF Y   SK   ++ ++  +   +  A++G SG GK++    + R  +
Sbjct: 2   QQLIPAIKVKDLSFYY-NTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58

Query: 342 PCSGSVEIEGI---------DLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC---- 388
              G V++EG+         D R+ ++  +RR I  V Q P     S+Y+N+A G     
Sbjct: 59  -LEGPVKVEGVVDFFGQNIYDPRI-NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA 116

Query: 389 --PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP 446
             P A   EI  +A+   A      L       L   A+ LS GQ QR+ IARA+     
Sbjct: 117 KLPQADLDEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPK 170

Query: 447 ILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485
           +LL+DE  SALD     K+ +++   R   T    +H +
Sbjct: 171 VLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 68.4 bits (168), Expect = 5e-12
 Identities = 56/202 (27%), Positives = 107/202 (52%), Gaps = 12/202 (5%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC---SGSVEIEGIDLRLLSLEEI 362
           L NV+  V+ GE ++L G++GAGK+++  ++   Y P     G +  EG +L+  ++ + 
Sbjct: 21  LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDT 79

Query: 363 -RRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
            R  IA + Q   ++   SV +NI +G        +   AM  +A + +  L+   +   
Sbjct: 80  ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT 139

Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI-WKVLRE-QRRGRTT 478
             G  +L  GQ Q + IA+A+ K + +L+LDE  ++L  E+E  +   ++R+ +  G   
Sbjct: 140 PVG--NLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196

Query: 479 IFASHRLSAIQD-ADMVFVLHD 499
           I+ SH+L+ ++  +D + V+ D
Sbjct: 197 IYISHKLNEVKAISDTICVIRD 218



 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 13/220 (5%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-PCSGSVEI 349
           R+++   P       + +V+F+++ GE + + G  GAG+T +   +   Y     G + I
Sbjct: 263 RNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322

Query: 350 EGIDLRLLS-LEEIRRFIAWVP----QHPIMIAASVYDNIAIGC--PHATRKEIQNAAML 402
           +G  +++ +  + I + IA VP    +  I+    V  NI +           I +AA L
Sbjct: 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL 382

Query: 403 AQAHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
               E I  L+    T   + A+  LS G  Q+  +A+ +L +  IL+LDE    +D+  
Sbjct: 383 KTILESIQRLK--VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440

Query: 462 EQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHD 499
           + +I+K++ +  ++G   I  S  L  +   +D V V+H+
Sbjct: 441 KYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHE 480


>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
           ATP-binding subunit.  This protein family is the
           ATP-binding cassette subunit of binding
           protein-dependent ABC transporter complex that strictly
           co-occurs with TIGR03769. TIGRFAMs model TIGR03769
           describes a protein domain that occurs singly or as one
           of up to three repeats in proteins of a number of
           Actinobacteria, including Propionibacterium acnes
           KPA171202. The TIGR03769 domain occurs both in an
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           ATP-binding subunits outside the scope of this family
           include manganese transporter MntA in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 223

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 20/211 (9%)

Query: 311 FTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVP 370
            +   GE + L+G +GAGKT++   IL    P  G+V++ G         +  R I +VP
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55

Query: 371 Q-------HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
           Q        PI +A +V            R  + + A +  A   +G  E      L D 
Sbjct: 56  QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE------LADR 109

Query: 424 AV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFA 481
            V  LS GQ QR+ +ARA+     +LLLDE  + LD+  ++ + ++  E    G   +  
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169

Query: 482 SHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512
           +H L+         VL +  ++  G  ++L 
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200


>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 67.8 bits (166), Expect = 6e-12
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 22/202 (10%)

Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP-----CSGSVEIE 350
           V+ G  K+++  +V+  +      A +G SG GK++    + R  D       +G + ++
Sbjct: 27  VFYG-EKQAL-FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84

Query: 351 GIDLRLLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCP-----HATRKEIQNAAM-- 401
           G D+    L+  E+R  +  V Q P     S+Y+N+A G P       ++ E+       
Sbjct: 85  GEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG-PRIHGLARSKAELDEIVETS 143

Query: 402 LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461
           L +A    G  E   D  L +    LS GQ QR+ IARAI     ++L+DE  SALD   
Sbjct: 144 LRKA----GLWEEVKDR-LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198

Query: 462 EQKIWKVLREQRRGRTTIFASH 483
             K+ +++ E R+  T +  +H
Sbjct: 199 TAKVEELIDELRQNYTIVIVTH 220


>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
           Provisional.
          Length = 377

 Score = 67.9 bits (166), Expect = 6e-12
 Identities = 61/203 (30%), Positives = 89/203 (43%), Gaps = 58/203 (28%)

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIA 367
           +V+ T+  GE  AL+G SG GK+++  ++  F  P +G + ++G+DL            +
Sbjct: 37  DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL------------S 84

Query: 368 WVP--QHPI-MIAAS--------VYDNIAIGCPH--ATRKEIQN--AAMLAQAH--EFIG 410
            VP  Q PI M+  S        V  NIA G       + EI +    ML   H  EF  
Sbjct: 85  HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144

Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
              +            LS GQ QR+A+AR++ K   +LLLDE   ALD        K LR
Sbjct: 145 RKPH-----------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALD--------KKLR 185

Query: 471 E----------QRRGRTTIFASH 483
           +          +R G T +  +H
Sbjct: 186 DRMQLEVVDILERVGVTCVMVTH 208


>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
           ATP-binding subunit.  This model describes daunorubicin
           resistance ABC transporter, ATP binding subunit in
           bacteria and archaea. This model is restricted in its
           scope to preferentially recognize the ATP binding
           subunit associated with effux of the drug, daunorubicin.
           This transport system belong to the larger ATP-Binding
           Cassette (ABC) transporter superfamily. The
           characteristic feature of these transporter is the
           obligatory coupling of ATP hydrolysis to substrate
           translocation. The minimal configuration of bacterial
           ABC transport system: an ATPase or ATP binding subunit;
           An integral membrane protein; a hydrophilic polypetpide,
           which likely functions as substrate binding protein. In
           eukaryotes proteins of similar function include p-gyco
           proteins, multidrug resistance protein etc.
          Length = 302

 Score = 67.8 bits (166), Expect = 6e-12
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 33/226 (14%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           +  VNF V+ GE    +G +GAGKT+   ++     P SG+  + G D+ +    ++RR 
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRS 67

Query: 366 IAWVPQHPIMIAASVYDNIA-----------IGCPHATRKEIQNAAMLAQAHEFIGCLEN 414
           I  VPQ+     ASV +++             G P    +E        +A E +   E 
Sbjct: 68  IGIVPQY-----ASVDEDLTGRENLEMMGRLYGLPKDEAEE--------RAEELLELFEL 114

Query: 415 GY--DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
           G   D  +G      S G  +R+ IA +++    +L LDE  + LD    + IW  +R  
Sbjct: 115 GEAADRPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170

Query: 473 RRGRTTIF-ASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516
           +    TI   +H +  A +  D + ++    I+ +G  EEL ++ G
Sbjct: 171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG 216


>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 67.7 bits (165), Expect = 7e-12
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358
           +K+V+         A++G SG GK+++   I R +D       +G + ++  D+  R + 
Sbjct: 20  VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79

Query: 359 LEEIRRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417
              IRR +  V Q P    A S+YDN+  G     R     A  + ++      L +   
Sbjct: 80  PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139

Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRT 477
             L   A+ LS GQ QR+ IAR I     ++L+DE  SALD  +  KI +++ E +   T
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYT 199

Query: 478 TIFASHRL---SAIQDADMVFVLHDQVIVEKG 506
            I  +H +   + + D    F + D  +VE G
Sbjct: 200 IIIVTHNMQQAARVSDYTAFFYMGD--LVECG 229


>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 288

 Score = 67.8 bits (165), Expect = 7e-12
 Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 15/251 (5%)

Query: 288 VSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
           + F  V++ Y   S      L +++  V+ G   AL+G +G+GK+++   +     P  G
Sbjct: 2   IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 346 SVEIEGIDLRLLS----LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNA 399
            V +  I +   S    ++ +R+ +  V Q P   +   +V  ++A G  +    + +  
Sbjct: 62  KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121

Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
            + A+  E +G  +  ++         LS GQ++R+AIA  +  +  +L+LDE  + LD 
Sbjct: 122 KIAAEKLEMVGLADEFWEK----SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177

Query: 460 ENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSGF 517
           +   ++ ++     + G+T +  +H +  + D AD V++L    I+  G   ++ ++  F
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237

Query: 518 YAHYHILGMSQ 528
               H LG+ +
Sbjct: 238 LKA-HELGVPK 247


>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
          Length = 248

 Score = 67.3 bits (165), Expect = 1e-11
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%)

Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLI---LRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           ++  V+ GE + LVG +GAGK+++ + +   L    P SGS++  G  L   S  E+ R 
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELARH 70

Query: 366 IAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424
            A++ Q      A  V+  + +  P  T    +  A+ +  +E    L  G D  LG   
Sbjct: 71  RAYLSQQQTPPFAMPVFQYLTLHQPDKT----RTEAVASALNEVAEAL--GLDDKLGRSV 124

Query: 425 VHLSTGQIQRIAIARAILKDSP-------ILLLDEMGSALDIENEQKIWKVLRE-QRRGR 476
             LS G+ QR+ +A  +L+  P       +LLLDE  ++LD+  +  + ++L E  ++G 
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGI 184

Query: 477 TTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513
             + +SH L+  ++ AD V++L    ++  G  +E+L 
Sbjct: 185 AVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222


>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 26/223 (11%)

Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341
           S ++ ++   ++SF Y     + IL+ V+  +   +  A++G SG GK++    + R  +
Sbjct: 2   SKLIPAIKVNNLSFYY---DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58

Query: 342 PCSGSVEIEG--------IDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC----- 388
                V +EG        I  R ++L  +RR ++ V   P +   SVYDN+A G      
Sbjct: 59  -LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117

Query: 389 -PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPI 447
            P     +I  +A+  +  +    +++     +   A+ LS GQ QR+ IARA+     +
Sbjct: 118 RPKLEIDDIVESAL--KDADLWDEIKHK----IHKSALDLSGGQQQRLCIARALAVKPKV 171

Query: 448 LLLDEMGSALDIENEQKIWKVLREQ--RRGRTTIFASHRLSAI 488
           LL+DE    LD     K+  +++    R   T +  SH L  +
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214


>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
           subunit; Provisional.
          Length = 356

 Score = 66.8 bits (164), Expect = 1e-11
 Identities = 68/239 (28%), Positives = 99/239 (41%), Gaps = 69/239 (28%)

Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346
            +  ++V   Y GK    ++K ++  V  GE I LVG SG GK+++  ++       SG 
Sbjct: 3   GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60

Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQ----HPIMIAASVYDNIAIG-----CPHATRKE-I 396
           + I G    +  LE   R IA V Q    +P M   SV +N+A G      P A  +E +
Sbjct: 61  IWIGG--RVVNELEPADRDIAMVFQNYALYPHM---SVRENMAYGLKIRGMPKAEIEERV 115

Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAV------HLSTGQIQRIAIARAILKDSPILLL 450
             AA                  IL    +       LS GQ QR+A+ RAI+++  + L 
Sbjct: 116 AEAA-----------------RILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158

Query: 451 DEMGSALD--------IENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501
           DE  S LD        +E       + R  RR +TT               ++V HDQV
Sbjct: 159 DEPLSNLDAKLRVQMRLE-------IQRLHRRLKTT--------------SLYVTHDQV 196


>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 66.6 bits (162), Expect = 2e-11
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 10/195 (5%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC-----SGSVEIEGIDLRLLSLE 360
           +++ +  ++  E    +G SG GK+++   + R  D        G V   G D+    ++
Sbjct: 24  VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83

Query: 361 EI--RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDT 418
            +  RR+I  V Q P   + S++DN+A G     R +      +  A +     +   D 
Sbjct: 84  PVVVRRYIGMVFQQPNPFSMSIFDNVAFGL-RLNRYKGDLGDRVKHALQGAALWDEVKDK 142

Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTT 478
           +   G + LS GQ QR+ IARAI  +  +LLLDE  SALD    +++ +++ E ++  T 
Sbjct: 143 LKVSG-LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTI 201

Query: 479 IFASHRL-SAIQDAD 492
              +H +  AI+ AD
Sbjct: 202 ALVTHNMQQAIRVAD 216


>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
           ABC transporter, ATP-binding subunit.  Model TIGR03731
           represents the family of all lantibiotics related to
           gallidermin, including epidermin, mutatin, and nisin.
           This protein family describes the ATP-binding subunit of
           a gallidermin/epidermin class lantibiotic protection
           transporter. It is largely restricted to
           gallidermin-family lantibiotic biosynthesis and export
           cassettes, but also occurs in orphan transporter
           cassettes in species that lack candidate lantibiotic
           precursor and synthetase genes.
          Length = 223

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 28/210 (13%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361
           K++ + N++ TV       L+G +GAGK+++  +I     P SG +  +G       L +
Sbjct: 12  KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK 71

Query: 362 IRRFIAWVPQHPIMIAASVYDNIAI-----GCPHATRKEIQNAAMLAQAHEFIGCLENGY 416
           I   I      P+    +  +N+ +     G P +   E+ N          I  L N  
Sbjct: 72  IGSLIE---SPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNTG 118

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD---IENEQKIWKVLREQR 473
                      S G  QR+ IA A+L    +L+LDE  + LD   I+  +++ +   EQ 
Sbjct: 119 KKKAKQ----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ- 173

Query: 474 RGRTTIFASHRLSAIQD-ADMVFVLHDQVI 502
            G T I +SH LS +Q  AD + ++ + V+
Sbjct: 174 -GITVILSSHILSEVQQLADHIGIISEGVL 202


>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 272

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 44/236 (18%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIF-SLILRFYDPC-------SGSVEIEGIDL 354
           R+IL++++  ++PG   AL+G +GAGK+++  +L               +G V + G  L
Sbjct: 14  RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73

Query: 355 RLLSLEEIRRFIAWVPQ--HPIMIAASVYDNIAIGC-PHATR--------KEIQNAAMLA 403
             +    + R  A +PQ   P   A S  + + +G  PHA R         EI   A LA
Sbjct: 74  AAIDAPRLARLRAVLPQAAQP-AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA-LA 131

Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP---------ILLLDEMG 454
            A         G   ++G     LS G++ R+  AR + +  P          LLLDE  
Sbjct: 132 LA---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182

Query: 455 SALDIENEQKIW----KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
           +ALD+ ++ ++     ++ R+   G   I     L+A + AD + +L D  IV  G
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHG 237


>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding cassette
           (ABC) protein of the three subunit molybdate ABC
           transporter. The three proteins of this complex are
           homologous to proteins of the sulfate ABC transporter.
           Molybdenum may be used in nitrogenases of
           nitrogen-fixing bacteria and in molybdopterin cofactors.
           In some cases, molybdate may be transported by a sulfate
           transporter rather than by a specific molybdate
           transporter.
          Length = 354

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 15/217 (6%)

Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL----RLLSLEEIRR 364
            +FT+      A+ G SG+GKT++  LI     P  G + + G  L    + + L   +R
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75

Query: 365 FIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
            I +V Q   +    SV  N+  G   A   E +           I  L  G   +LG  
Sbjct: 76  RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRL 128

Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR--GRTTIFA 481
              LS G+ QR+AI RA+L    +LL+DE  +ALD   + +I   L       G   ++ 
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188

Query: 482 SHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSGF 517
           SH L  +   AD V VL D  +   G   E+      
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225


>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 18/231 (7%)

Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350
           VY G +   ++K V+  +      AL+G SG GK+++     R  +        G V + 
Sbjct: 12  VYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLF 69

Query: 351 GIDLRLLSLE--EIRRFIAWVPQHPIMIA-ASVYDNIAIGCPH----ATRKEIQNAAMLA 403
           G ++    ++  E+RR +  V Q+P      ++YDN+AIG        ++KE+      A
Sbjct: 70  GRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA 129

Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
                   L +     L D   +LS GQ QR+ IARA+     ILL+DE  + +D     
Sbjct: 130 LKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTA 186

Query: 464 KIWKVLREQRRGRTTIFASHR-LSAIQDADMVFVLHDQVIVEKGVHEELLK 513
           KI ++L E ++  T +  +H    A + +D V  L+   ++E G   ++ +
Sbjct: 187 KIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237


>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 264

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 36/218 (16%)

Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350
           VY G      +KNV   +   +  A +G SG GK++I     R  D        G V   
Sbjct: 18  VYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFH 75

Query: 351 GIDLRLLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGC---------PHATRKEIQNA 399
           G +L    ++  E+RR I  V Q P     S+YDNIA G               + ++ A
Sbjct: 76  GKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA 135

Query: 400 AMLAQAHEFIGCLENGYDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
           A+              +D +   L    + LS GQ QR+ IARAI     ++L+DE  SA
Sbjct: 136 AL--------------WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181

Query: 457 LDIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADM 493
           LD  +  +I +++ E +   T I  +H +  A + +DM
Sbjct: 182 LDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDM 219


>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
           YbbA; Provisional.
          Length = 228

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 14/193 (7%)

Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358
           G+ + SIL  V   V+ GETIAL+G+SG+GK+++ +++    D  SG V + G  L  + 
Sbjct: 19  GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD 78

Query: 359 LEEIR-----RFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412
            EE R     + + +V Q  ++I   +  +N+ +  P   R E    +    A   +  L
Sbjct: 79  -EEARAKLRAKHVGFVFQSFMLIPTLNALENVEL--PALLRGESSRQSR-NGAKALLEQL 134

Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472
             G    L      LS G+ QR+A+ARA      +L  DE    LD +   KI  +L   
Sbjct: 135 --GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192

Query: 473 RR--GRTTIFASH 483
            R  G T I  +H
Sbjct: 193 NREHGTTLILVTH 205


>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 290

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 58/242 (23%), Positives = 116/242 (47%), Gaps = 21/242 (8%)

Query: 288 VSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
           ++F+ V   Y  K+  +R  L +VN ++  G  +A++G +G+GK+++   +     P SG
Sbjct: 3   ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62

Query: 346 SVEIEGIDLRLLS-------LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEI 396
           +V I     R+++       L+ +R+ +  V Q P   +   +V  +I  G  +    E 
Sbjct: 63  TVTIGE---RVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119

Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
                  +  E +G  E     +L      LS GQ++R+AIA  +  +  +L+LDE  + 
Sbjct: 120 DAKQKAREMIELVGLPEE----LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175

Query: 457 LDIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513
           LD +  +++ ++  +  + +G TT+  +H +  A + AD + V+H   +  +G   E+  
Sbjct: 176 LDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235

Query: 514 KS 515
             
Sbjct: 236 DP 237


>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 271

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 21/194 (10%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358
           LKN+N  +   E  A++G SG GK++    + R  +       +G +     ++  +  S
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99

Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENG- 415
           +EE+R  +  V Q P     S+YDN+  G P  H     I++   L +  E    L    
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHG----IKDKKTLDEIVE--KSLRGAA 152

Query: 416 -YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
            +D +   L D A  LS GQ QR+ IAR +  +  ++L+DE  SALD  +  K+ ++++E
Sbjct: 153 IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212

Query: 472 QRRGRTTIFASHRL 485
            ++  + I  +H +
Sbjct: 213 LKKDYSIIIVTHNM 226


>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
            Members of this family are the PhnK protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated complex. This protein (PhnK) and the
           adjacent-encoded PhnL resemble transporter ATP-binding
           proteins but are suggested, based on mutatgenesis
           studies, to be part of this complex rather than part of
           a transporter per se.
          Length = 253

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 28/226 (12%)

Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE---GIDLRLLSLEEI- 362
           ++V+F + PGE + +VG+SG+GK+++   +     P  G+       G +L L  L E  
Sbjct: 20  RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79

Query: 363 RRFIA---W--VPQHP---IMIAASVYDNI-----AIGCPHATRKEIQNAAMLAQAHEFI 409
           RR +    W  V Q+P   + +  S   NI     AIG  H          + A AH+++
Sbjct: 80  RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-------IRAAAHDWL 132

Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
             +E     I  D     S G  QR+ IAR ++    ++ +DE    LD+  + ++  +L
Sbjct: 133 EEVEIDPTRI-DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191

Query: 470 REQRR--GRTTIFASHRLSAIQ-DADMVFVLHDQVIVEKGVHEELL 512
           R   R  G   I  +H L   +  A  + V+    +VE G+ +++L
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237


>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 207

 Score = 64.9 bits (159), Expect = 6e-11
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
           R +   ++FT+  GE + L G +G+GKT++  LI     P +G+++++G D+    + E 
Sbjct: 15  RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA 74

Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
             ++    ++ +  A +V +N+                 L      +  +  G   +   
Sbjct: 75  CHYLG--HRNAMKPALTVAENLEFW------AAFLGGEELD-IAAALEAV--GLAPLAHL 123

Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGRTTIFA 481
              +LS GQ +R+A+AR ++ + PI +LDE  +ALD        +++R    +G   I A
Sbjct: 124 PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183

Query: 482 SH 483
           +H
Sbjct: 184 TH 185


>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 64.2 bits (156), Expect = 7e-11
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSI---FSLILRFYDPCSGSVEIEGIDLRLLS---- 358
           LKN+N ++   E  A++G SG GK++     +L+++       + E+      +L     
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATR-----KEIQNAAMLAQAHEFIGC 411
           L E+R+ I  V Q       S++DN+A G P  H T+     +EI   ++   A      
Sbjct: 88  LVELRKNIGMVFQKGNPFPQSIFDNVAYG-PRIHGTKNKKKLQEIVEKSLKDVA------ 140

Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
           L +     L   A+ LS GQ QR+ IARA+  +  +LL+DE  SALD  + +KI +++ +
Sbjct: 141 LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200

Query: 472 QRRGRTTIFASHRL 485
            +   T +  +H +
Sbjct: 201 LKEKYTIVIVTHNM 214


>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
           Provisional.
          Length = 257

 Score = 63.9 bits (156), Expect = 9e-11
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 50/216 (23%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS---- 358
           R++L  ++  +  G+ +A+VG SG GK+++  L+     P +G          LL+    
Sbjct: 25  RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE---------LLAGTAP 75

Query: 359 LEEIR----------RFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408
           L E R          R + W           V DN+ +G     + + ++AA+  QA   
Sbjct: 76  LAEAREDTRLMFQDARLLPW---------KKVIDNVGLG----LKGQWRDAAL--QALAA 120

Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD----IENEQK 464
           +G  +        +    LS GQ QR+A+ARA++    +LLLDE   ALD    IE +  
Sbjct: 121 VGLADRA-----NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL 175

Query: 465 IWKVLREQRRGRTTIFASHRLS-AIQDADMVFVLHD 499
           I  + ++   G T +  +H +S A+  AD V ++ +
Sbjct: 176 IESLWQQH--GFTVLLVTHDVSEAVAMADRVLLIEE 209


>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
           Provisional.
          Length = 254

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 28/225 (12%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP----CSGSVEIEGIDLRLLS 358
           + ++  V+ T+Q G  +ALVG SG+GK+   +  L          +G V ++G  +   +
Sbjct: 16  QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV---A 72

Query: 359 LEEIR-RFIAWVPQHP--------IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFI 409
              +R R IA + Q+P         M   +    +A+G P        + A L  A E +
Sbjct: 73  PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP-------ADDATLTAALEAV 125

Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
           G LEN    +L      +S G +QR+ IA A+L ++P ++ DE  + LD+  + +I  +L
Sbjct: 126 G-LENA-ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLL 183

Query: 470 RE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
               Q+R    +  +H +  +   AD V V+    IVE+G  E L
Sbjct: 184 ESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228


>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 274

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 13/189 (6%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG---------IDLRL 356
           L +V+  +   + IA +G SG GK+++     R  D   G+ ++EG          D ++
Sbjct: 36  LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA-KVEGRLLYRDRNIYDSQI 94

Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416
            S++ +RR +  V Q P     S+Y+NIA   P A   +     ++  +       E   
Sbjct: 95  NSVK-LRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIWEEVK 152

Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476
           D +   G   LS GQ QR+ IARAI     +LL+DE  SALD  + +++ ++  E +   
Sbjct: 153 DKLKEKGTA-LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211

Query: 477 TTIFASHRL 485
           T I  +H +
Sbjct: 212 TIIMVTHNM 220


>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA.  This
           model describes the cyt c biogenesis protein encoded by
           ccmA in bacteria. An exception is, an arabidopsis
           protein. Quite likely this is encoded by an organelle.
           Bacterial c-type cytocromes are located on the
           periplasmic side of the cytoplasmic membrane. Several
           gene products encoded in a locus designated as 'ccm' are
           implicated in the transport and assembly of the
           functional cytochrome C. This cluster includes genes:
           ccmA;B;C;D;E;F;G and H. The posttranslational pathway
           includes the transport of heme moiety, the secretion of
           the apoprotein and the covalent attachment of the heme
           with the apoprotein. The proteins ccmA and B represent
           an ABC transporter; ccmC and D participate in heme
           transfer to ccmE, which function as a periplasmic heme
           chaperone. The presence of ccmF, G and H is suggested to
           be obligatory for the final functional assembly of
           cytochrome c.
          Length = 198

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
           R + + ++FT+  GE + + G +G GKT++  ++     P SG V   G  L     +E 
Sbjct: 13  RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEP 71

Query: 363 RRFIAWVPQHPIMIAA-SVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
            R I ++   P +    S  +N+      H   +       +  A   +G    G++ + 
Sbjct: 72  HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR-----TIEDALAAVGL--TGFEDLP 124

Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRGRTTI 479
              A  LS GQ +R+A+AR  L  +P+ +LDE  +ALD      +  +LR    RG   +
Sbjct: 125 ---AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVL 181

Query: 480 FASH 483
             +H
Sbjct: 182 LTTH 185


>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
           Several bacterial species have enzymes xylose isomerase
           and xylulokinase enzymes for xylose utilization. Members
           of this protein family are the ATP-binding cassette
           (ABC) subunit of the known or predicted high-affinity
           xylose ABC transporter for xylose import. These genes,
           which closely resemble other sugar transport ABC
           transporter genes, typically are encoded near xylose
           utilization enzymes and regulatory proteins. Note that
           this form of the transporter contains two copies of the
           ABC transporter domain (pfam00005).
          Length = 500

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 16/205 (7%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC---SGSVEIEGIDLRLLSLEEI 362
           L  ++  V+PGE + L G++GAGK+++  ++   Y P     G +   G  L+  ++ + 
Sbjct: 17  LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDT 75

Query: 363 -RRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQN-AAMLAQAHEFIGCLENGYDTI 419
            R  I  + Q   ++   SV +NI +G             AM  +A   +  L+   D +
Sbjct: 76  ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135

Query: 420 ---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRG 475
              +GD       GQ Q + IA+A+ K + +L+LDE  S+L  +  + +  ++R+ +  G
Sbjct: 136 TRPVGD----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191

Query: 476 RTTIFASHRLSAIQD-ADMVFVLHD 499
              ++ SH+L+ ++   D + V+ D
Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRD 216



 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 15/221 (6%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-PCSGSVEI 349
           R+++        R  + +V+F+++ GE + + G  GAG+T +   +   Y     G+V I
Sbjct: 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320

Query: 350 EG--IDLRLLSLEEIRRFIAWVPQ----HPIMIAASVYDNIAIGC--PHATRKEIQNAAM 401
            G  +D+R    + IR  IA VP+    H I+    V  NI +        +  I  AA 
Sbjct: 321 NGKPVDIRN-PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE 379

Query: 402 LAQAHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
           L      I  L+    T      +  LS G  Q+  +A+ +L +  +L+LDE    +D+ 
Sbjct: 380 LQIIGSAIQRLK--VKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437

Query: 461 NEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHD 499
            + +I+K++ +  + G   I  S  L+ +   +D V V+ +
Sbjct: 438 AKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGE 478


>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
           protein UrtD.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 242

 Score = 61.8 bits (151), Expect = 5e-10
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 31/218 (14%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI--- 362
           L +++  V PGE   ++G +GAGKT++  +I     P  GSV   G DL  L   +I   
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77

Query: 363 ---RRFIAWVPQHP-IMIAASVYDNIAIGCP----------HATRKEIQNAAMLAQAHEF 408
              R+F     Q P +    +V++N+ +  P               E ++   + +  E 
Sbjct: 78  GIGRKF-----QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR--IEEVLET 130

Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468
           IG  +          A  LS GQ Q + I   +++D  +LLLDE  + +  E  +K  ++
Sbjct: 131 IGLADE-----ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL 185

Query: 469 LREQRRGRTTIFASHRLSAIQD-ADMVFVLHD-QVIVE 504
           L+      + +   H +  ++  AD V VLH   V+ E
Sbjct: 186 LKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223


>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC.  SufC is part of the SUF
           system, shown in E. coli to consist of six proteins and
           believed to act in Fe-S cluster formation during
           oxidative stress. SufC forms a complex with SufB and
           SufD. SufC belongs to the ATP-binding cassette
           transporter family (pfam00005) but is no longer thought
           to be part of a transporter. The complex is reported as
           cytosolic (PubMed:12554644) or associated with the
           membrane (PubMed:11943156). The SUF system also includes
           a cysteine desulfurase (SufS, enhanced by SufE) and a
           probable iron-sulfur cluster assembly scaffold protein,
           SufA.
          Length = 243

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 21/221 (9%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL--RFYDPCSGSVEIEGIDLRLLSL 359
            + ILK VN TV+ GE  A++G +G+GK+++   I     Y+  SG++  +G DL  L  
Sbjct: 12  DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71

Query: 360 EEIRR---FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416
           +E  R   F+A   Q+P  I             +A R       +     +F+  L+   
Sbjct: 72  DERARAGLFLA--FQYPEEIPGVSNLEFLRSALNARRSARGEEPL--DLLDFLKLLKAKL 127

Query: 417 DTILGDGA-------VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469
             +  D            S G+ +R  I +  L +  + +LDE+ S LDI+  + + + +
Sbjct: 128 ALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187

Query: 470 REQR-RGRTTIFASHR---LSAIQDADMVFVLHDQVIVEKG 506
              R   R+ +  +H    L+ I+  D V VL D  IV+ G
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIK-PDYVHVLLDGRIVKSG 227


>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 214

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
           +   ++F V  GE + + GD+GAGKT++  ++       SG ++I+G   +  +  +  R
Sbjct: 26  VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG---KTATRGDRSR 82

Query: 365 FIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
           F+A++   P + A  S  +N+   C    R+  Q   M   A   +G L    DT++   
Sbjct: 83  FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ---MPGSALAIVG-LAGYEDTLVR-- 136

Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
              LS GQ +R+A+AR  L  +P+ LLDE  + LD+E
Sbjct: 137 --QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171


>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 10/171 (5%)

Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--P---CSGSVEIE 350
           +Y G      +++VN  ++P    A +G SG GK+++   + R ++  P     G V ++
Sbjct: 12  IYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69

Query: 351 GIDLRLLSLE--EIRRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
           G DL    ++   +RR I  V Q P      S+ DN+  G      +  ++   L +   
Sbjct: 70  GEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSL 129

Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
               L N     L      LS GQ QR+ IARAI  +  +LL+DE  SALD
Sbjct: 130 RGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180


>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
           Provisional.
          Length = 501

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 26/219 (11%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE---- 361
           L      V PG  +ALVG++GAGK+++  ++   Y   +GS+   G ++     +     
Sbjct: 20  LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79

Query: 362 ----IRRFIAWVPQHPIMIAASVYDNIAIGCPHATR-KEIQNAAMLAQAHEFIGCLENGY 416
               I + +  +PQ  + IA    +NI +G     R   I    M A+A + +  L   +
Sbjct: 80  GIGIIHQELNLIPQ--LTIA----ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF 133

Query: 417 --DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL-DIENEQKIWKVLREQR 473
             D ++G+    LS G+ Q + IA+ +  +S ++++DE   AL D E E  +++V+RE +
Sbjct: 134 SSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES-LFRVIRELK 188

Query: 474 -RGRTTIFASHRLSAI-QDADMVFVLHD-QVIVEKGVHE 509
            +GR  ++ SHRL  I +  D V V  D Q I E+ V +
Sbjct: 189 SQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227



 Score = 33.4 bits (77), Expect = 0.13
 Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE-IRR 364
           + +V+FT++ GE + + G  GAG+T +  ++       SG V ++G ++   S ++ +  
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327

Query: 365 FIAWVPQHP----IMIAASVYDNIAI-GCPHATRK--EIQNAAMLAQAHEFIGCLEN--- 414
            I ++ +      +++  SV +N+++    + +R    +++A       +FI  L N   
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR-LFNIKT 386

Query: 415 -GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
              +  +G     LS G  Q++AIAR ++    +L+LDE
Sbjct: 387 PSMEQAIGL----LSGGNQQKVAIARGLMTRPKVLILDE 421


>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 237

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           +SF  VS  Y    K   L  V+  +  GE + L+G +GAGKT++   +       SG +
Sbjct: 6   LSFDKVSAHY---GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62

Query: 348 EIEGIDLRLLSLEEI-RRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
             +G D+      +I R  +A VP+   +    +V +N+A+G   A R + Q    +   
Sbjct: 63  VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWV 120

Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
           +E    L        G     +S G+ Q +AI RA++    +LLLDE    L     Q+I
Sbjct: 121 YELFPRLHERRIQRAGT----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176

Query: 466 WKVLREQRRGRTTIFASHRLS--AIQDADMVFVLHDQVIVEKGVHEELL 512
           +  + + R    TIF   + +  A++ AD  +VL +  +V +   + LL
Sbjct: 177 FDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225


>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
          Length = 718

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 57/204 (27%), Positives = 81/204 (39%), Gaps = 44/204 (21%)

Query: 271 ISSPISSRTFPSP----VLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSG 326
           ++ P     FP+P        +SF   SF YPG     + KN+NF +     IA+VG +G
Sbjct: 488 VNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNG 545

Query: 327 AGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAI 386
            GK++I  LI     P SG+V             ++R  +A   QH              
Sbjct: 546 IGKSTILKLISGELQPSSGTV---------FRSAKVR--MAVFSQH-------------- 580

Query: 387 GCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH----------LSTGQIQRIA 436
              H    ++ +  +L     F G  E      LG   V           LS GQ  R+A
Sbjct: 581 ---HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 637

Query: 437 IARAILKDSPILLLDEMGSALDIE 460
            A+   K   ILLLDE  + LD++
Sbjct: 638 FAKITFKKPHILLLDEPSNHLDLD 661



 Score = 30.2 bits (68), Expect = 1.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 428 STGQIQRIAIARAILKDSPILLLDEMGSALDI 459
           S G   RIA+ARA+  +  +LLLDE  + LD+
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377


>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 204

 Score = 58.7 bits (143), Expect = 4e-09
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
           R +   ++FT+  GE + + G +GAGKTS+  ++     P +G V  +G  +R    +E 
Sbjct: 14  RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEY 72

Query: 363 RRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421
            + + ++   P I    +  +N+             +   L +A   +G    G++ +  
Sbjct: 73  HQDLLYLGHQPGIKTELTALENLRFYQRLH---GPGDDEALWEALAQVGLA--GFEDVP- 126

Query: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458
                LS GQ +R+A+AR  L  +P+ +LDE  +A+D
Sbjct: 127 --VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161


>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
           protein NodI.  This model does not recognize the highly
           divergent NodI from Azorhizobium caulinodans.
          Length = 303

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 21/208 (10%)

Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341
           S V  ++    VS  Y  K    ++ +++FT+  GE   L+G +GAGK++I  ++L    
Sbjct: 1   SNV--AIDLVGVSKSYGDKV---VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55

Query: 342 PCSGSVEIEGIDL----RLLSLEEIRRFIAWVPQHPIM-IAASVYDNIAIGCPHATRKEI 396
           P  G + + G  +    RL      R  I  VPQ   +    +V +N+ +   +      
Sbjct: 56  PDRGKITVLGEPVPSRARL-----ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR 110

Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
           +  A++    EF   LE+  D  +      LS G  +R+ +ARA++ D  +L+LDE  + 
Sbjct: 111 EIEAVIPSLLEF-ARLESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTG 165

Query: 457 LDIENEQKIWKVLRE-QRRGRTTIFASH 483
           LD      IW+ LR    RG+T +  +H
Sbjct: 166 LDPHARHLIWERLRSLLARGKTILLTTH 193


>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
          Length = 635

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 56/187 (29%)

Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGI 352
           V++   GK    ++K+ +  VQ G+ IAL+G +G GKT++  L+L      SG +   G 
Sbjct: 325 VNYQIDGKQ---LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380

Query: 353 DLRLLSLEEIRRFIAWVPQHPIMIAA-----SVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
            L           +A+  QH    A      +V DN+A G     ++E+    M+     
Sbjct: 381 KLE----------VAYFDQHR---AELDPEKTVMDNLAEG-----KQEV----MV----- 413

Query: 408 FIGCLENGYDT-ILG---DGAVH----------LSTGQIQRIAIARAILKDSPILLLDEM 453
                 NG    +LG   D   H          LS G+  R+ +AR  LK S +L+LDE 
Sbjct: 414 ------NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP 467

Query: 454 GSALDIE 460
            + LD+E
Sbjct: 468 TNDLDVE 474



 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 47/216 (21%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
           +L N    ++  E + LVG +GAGK+++  ++        G +  E  DL +  L++   
Sbjct: 18  LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQ--- 73

Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRK------------------------------ 394
                   P  +  +VYD +A G                                     
Sbjct: 74  ------DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127

Query: 395 EIQNAAML-AQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453
           +  N   L  + +E +  L    D  L      LS G +++ A+ RA++ +  +LLLDE 
Sbjct: 128 DHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEP 183

Query: 454 GSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQ 489
            + LDIE  + +   L+   +G + IF SH  S I+
Sbjct: 184 TNHLDIETIEWLEGFLKT-FQG-SIIFISHDRSFIR 217


>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
           ATP-binding protein; Provisional.
          Length = 491

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 13/215 (6%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350
            ++S  +PG      L NVN  V+P    AL+G++GAGK+++   +   Y   SGS+  +
Sbjct: 2   SNISKSFPGVKA---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 58

Query: 351 GIDLRLLSLEE-IRRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408
           G ++   S +E +   I+ V Q   +++  SV DN+ +G        +    M       
Sbjct: 59  GKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAI 118

Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL---DIENEQKI 465
               E   D         LS  Q+Q I IA+A   ++ I+++DE  S+L   ++ +   I
Sbjct: 119 FD--ELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176

Query: 466 WKVLREQRRGRTTIFASHRLSAI-QDADMVFVLHD 499
            + L+E  RG   ++ SH++  I Q  D + +L D
Sbjct: 177 IRKLKE--RGCGIVYISHKMEEIFQLCDEITILRD 209



 Score = 31.2 bits (71), Expect = 0.75
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 33/186 (17%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LEEIRR 364
           +++V+F +  GE + + G  GA +T I   +    +  +G++ + G  +   +  E I  
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323

Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN---------- 414
             A V +     +  +Y  + IG        I N   +      +G L+N          
Sbjct: 324 GFALVTEE--RRSTGIYAYLDIG----FNSLISN---IRNYKNKVGLLDNSRMKSDTQWV 374

Query: 415 ---------GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
                    G+ T +G     LS G  Q++ I R +L    IL+LDE    +D+  + +I
Sbjct: 375 IDSMRVKTPGHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430

Query: 466 WKVLRE 471
           ++++ E
Sbjct: 431 YQLIAE 436


>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
           protein SapF; Provisional.
          Length = 267

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 51/223 (22%), Positives = 110/223 (49%), Gaps = 29/223 (13%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           +K ++FT++ G+T+A++G++G+GK+++  ++    +P SG + I+   L         + 
Sbjct: 29  VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88

Query: 366 IAWVPQHPIMIAASVYDNIAIG----CPHATRKEIQNAAMLAQAHEFIGCLENGYDTI-- 419
           I  + Q P   + S+     I      P        N  +  +  E     +   +T+  
Sbjct: 89  IRMIFQDP---STSLNPRQRISQILDFPL-----RLNTDLEPEQRE-----KQIIETLRQ 135

Query: 420 ---LGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471
              L D A +    L+ GQ QR+ +ARA++    +++ DE  ++LD+    ++  ++ E 
Sbjct: 136 VGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195

Query: 472 -QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
            +++G + I+ +  L  ++  +D V V+H   +VE+G   ++L
Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238


>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 255

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 28/165 (16%)

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI-RRFI 366
           NVN  V+  E ++L+G +GAGKT++F+ +  FY P  G++ + G  +  L   +I R  +
Sbjct: 23  NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82

Query: 367 AWVPQH-----------PIMIAASVYDNIAI--------GCPHATRKEIQNAAMLAQAHE 407
               QH            +++A        +            A  + +  AA      E
Sbjct: 83  VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL---E 139

Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
            +G LE          A +L+ GQ +R+ IAR ++    IL+LDE
Sbjct: 140 RVGLLE-----HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179


>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
           component A2.  The enzyme that catalyzes the final step
           in methanogenesis, methyl coenzyme M reductase, contains
           alpha, beta, and gamma chains. In older literature, the
           complex of alpha, beta, and gamma chains was termed
           component C, while this single chain protein was termed
           methyl coenzyme M reductase system component A2.
          Length = 520

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 24/222 (10%)

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI----EGIDL---RLLSLE 360
           NV+  V+ GE   +VG SGAGKT++  +I    +P SG V +    E +D+         
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361

Query: 361 EIRRFIAWVPQ-HPIMIAASVYDN----IAIGCPH--ATRKEIQNAAMLAQAHEFIGCLE 413
             +R+I  + Q + +    +V DN    I +  P   A  K +    M       +G  E
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKM-------VGFDE 414

Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473
              + IL      LS G+  R+A+A+ ++K+  I++LDE    +D   +  +   + + R
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474

Query: 474 R--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512
               +T I  SH +  + D  D   ++ D  IV+ G  EE++
Sbjct: 475 EEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516



 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 53/254 (20%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLI--LRFYDP-------------------- 342
           +LKN++FT++ GE + ++G SGAGK+ +  ++  +  Y+P                    
Sbjct: 15  VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74

Query: 343 ----------CSGSVEIEGIDLRLLSLEEIRRF---IAWVPQHPIMIAA--SVYDNIAIG 387
                     C G++E E +D   LS +  RR    IA + Q    +    +V DN+   
Sbjct: 75  PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134

Query: 388 CPHA---TRKEIQNAA-MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILK 443
                   ++ +  A  ++         L +    I  D    LS G+ QR+ +AR + K
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQ-----LSHRITHIARD----LSGGEKQRVVLARQLAK 185

Query: 444 DSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQ 500
           +  + L DE    LD +  + +   L E  +  G + +  SH    I+D +D    L + 
Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245

Query: 501 VIVEKGVHEELLKK 514
            I E+G  +E++  
Sbjct: 246 EIKEEGTPDEVVAV 259


>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
          Length = 251

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 43/204 (21%)

Query: 292 SVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG 351
           SVSF      +R +L +V+  ++PG+ + L+G +GAGK+++  ++L    P  G ++  G
Sbjct: 11  SVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG 65

Query: 352 IDLRLLSLEEIRRFIAWVPQH-------PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQ 404
             LR          I +VPQ        P+ +   +        P   +++I  A    Q
Sbjct: 66  -KLR----------IGYVPQKLYLDTTLPLTVNRFLRLR-----PGTKKEDILPALKRVQ 109

Query: 405 AHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
           A   I            D  +  LS G+ QR+ +ARA+L    +L+LDE    +D+  + 
Sbjct: 110 AGHLI------------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157

Query: 464 KIWKVLREQRR--GRTTIFASHRL 485
            ++ ++ + RR      +  SH L
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHDL 181


>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
           YrbF; Provisional.
          Length = 269

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 28/238 (11%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
           V  R VSF    +  R I  N++ TV  G+  A++G SG GKT++  LI     P  G +
Sbjct: 8   VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64

Query: 348 EIEGIDLRLLS---LEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATR--KEIQNAAM 401
             +G ++  +S   L  +R+ ++ + Q   +    +V+DN+A      T+    + ++ +
Sbjct: 65  LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124

Query: 402 LAQAHEFIGCLENGYDTILGDGAVH-----LSTGQIQRIAIARAILKDSPILLLDEMGSA 456
           + +  E +G            GA       LS G  +R A+ARAI  +  +++ DE    
Sbjct: 125 MMKL-EAVGL----------RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVG 173

Query: 457 LDIENEQKIWKVLREQRR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
            D      + K++ E     G T +  SH +  +   AD  +++ D+ IV  G  + L
Sbjct: 174 QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231


>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 320

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 56/268 (20%), Positives = 120/268 (44%), Gaps = 30/268 (11%)

Query: 281 PSPVLGSVSFR--SVSFVYPGKSKRSI--LKNVNFTVQPGETIALVGDSGAGKTSIFSLI 336
           P+P+   +  R  ++  V+  K +  +  L N+++T +  +   ++G+SG+GK+++ +  
Sbjct: 13  PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHF 72

Query: 337 LRFYDPCSGSVEIEGIDL----------------RLLSLEEIRRFIAWVPQHP--IMIAA 378
                   G++++  I +                ++ + +E+RR ++ V Q P   +   
Sbjct: 73  NGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132

Query: 379 SVYDNIAIGCPHATRKEIQNAAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAI 437
           ++  +I  G P A   +   A  LA+ +   +G      D+ L      LS GQ +R+AI
Sbjct: 133 TIEKDIMFG-PVALGVKKSEAKKLAKFYLNKMGL----DDSYLERSPFGLSGGQKRRVAI 187

Query: 438 ARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRTTIFASHRLSAIQD-ADMVF 495
           A  +     IL+ DE  + LD + E ++ +++ + +   +T    +H +  + + AD V 
Sbjct: 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247

Query: 496 VLHDQVIVEKGVHEELLKKSGFYAHYHI 523
           V+    I++ G   E+           I
Sbjct: 248 VMDKGKILKTGTPYEIFTDQHIINSTSI 275


>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 37/235 (15%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--IDLRLLSLEEI 362
           +LK +N          LVG +G GK+++F  +     P  G+V  +G  +D     L  +
Sbjct: 16  VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75

Query: 363 RRFIAWVPQHP--IMIAASVYDNIA-----IGCPHA-TRKEIQNAAMLAQAHEF----IG 410
           R+ +A V Q P   +    +  +IA     +G P A   + +  A  L  A  F    I 
Sbjct: 76  RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135

Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE-QKIWKVL 469
           CL               S GQ +R+AIA A++  +  LLLDE  + LD     Q I  + 
Sbjct: 136 CL---------------SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180

Query: 470 REQRRGRTTIFASHRLSAIQD-ADMVFVL-HDQVIVEKGVHE-----ELLKKSGF 517
           R   +G   I +SH +  I + +D V+VL   Q++      E     E ++++G 
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGL 235


>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
           protein ModF; Provisional.
          Length = 490

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 43/206 (20%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI-----------LRFYDPCSGSVEIEG 351
           R IL N+++ V PGE   +VG +GAGK+++ SLI           L  +    GS E   
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE--- 329

Query: 352 IDLRLLSLEEIRRFIAWVPQHPIM---IAASVYDNI------AIGCPHATRKEIQNAAML 402
                 ++ +I++ I +V     +   ++ SV + I      +IG   A     Q  A  
Sbjct: 330 ------TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQ- 382

Query: 403 AQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIA-IARAILKDSPILLLDEMGSALDIE 460
               +++  L  G D    D   H LS GQ QR+A I RA++K   +L+LDE    LD  
Sbjct: 383 ----QWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPL 435

Query: 461 NEQKIWKVLREQ--RRGRTT-IFASH 483
           N Q + + + +     G T  +F SH
Sbjct: 436 NRQLVRRFV-DVLISEGETQLLFVSH 460



 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 34/222 (15%)

Query: 310 NFTVQPGETIALVGDSGAGKTSIF-----SLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
           + T+  G++ A VG +G+GK+++       L L      SG  + +   +  LS E++++
Sbjct: 23  SLTLNAGDSWAFVGANGSGKSALARALAGELPL-----LSGERQSQFSHITRLSFEQLQK 77

Query: 365 FIA--WVPQHPIMIAASVYDNIAIGCPHATRKEIQNA-------AMLAQAHEFIGCLENG 415
            ++  W   +  M++    D         T + IQ+          LAQ  +F      G
Sbjct: 78  LVSDEWQRNNTDMLSPGEDDT-----GRTTAEIIQDEVKDPARCEQLAQ--QF------G 124

Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRR 474
              +L     +LSTG+ ++  + +A++ +  +L+LDE    LD+ + Q++ ++L    + 
Sbjct: 125 ITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS 184

Query: 475 GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKS 515
           G T +   +R   I D      VL D  + E G  EE+L+++
Sbjct: 185 GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226


>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
           Provisional.
          Length = 258

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 28/225 (12%)

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL----EEIR 363
           +V+F + PGE + +VG+SG+GKT++ + +     P +G V     D +L  L    E  R
Sbjct: 24  DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83

Query: 364 RFIA---W--VPQHP---IMIAASVYDNI-----AIGCPHATRKEIQNAAMLAQAHEFIG 410
           R +    W  V QHP   + +  S   NI     A+G  H          + A A +++ 
Sbjct: 84  RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD-------IRATAGDWLE 136

Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
            +E     I  D     S G  QR+ IAR ++    ++ +DE    LD+  + ++  +LR
Sbjct: 137 RVEIDAARI-DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195

Query: 471 EQRR--GRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
              R  G   +  +H L+ A   A  + V+    +VE G+ +++L
Sbjct: 196 GLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240


>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 326

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 55/240 (22%)

Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSL-ILRFYD-P---CSGSVEIEGIDLRLLSLEEI 362
            ++++V+ GE + +VG+SG+GK S+ SL I+   D P    +  +E  G DL+ +S +E 
Sbjct: 25  RISYSVKQGEVVGIVGESGSGK-SVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83

Query: 363 RRFI----AWVPQHP-------------IMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
           R  +    A + Q P             IM A  V+     G    TR++        +A
Sbjct: 84  RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ----GGNKKTRRQ--------RA 131

Query: 406 HEFIGCLENGYDTILG--------DGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSA 456
            + +          +G        D   H LS G  QR+ IA AI     +L+ DE  +A
Sbjct: 132 IDLL--------NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTA 183

Query: 457 LDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513
           LD+  + +I ++L E  Q+     +  +H L+ + + A  + V++   +VE G   ++ +
Sbjct: 184 LDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243


>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
           activities.  AAA - ATPases associated with a variety of
           cellular activities. This profile/alignment only detects
           a fraction of this vast family. The poorly conserved
           N-terminal helix is missing from the alignment.
          Length = 148

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 59/199 (29%)

Query: 315 PGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPI 374
           PGE I +VG  G+GKT++   + R   P  G V         +  E+I            
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------IDGEDILE---------- 43

Query: 375 MIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQR 434
                                                L+     I+G      S     R
Sbjct: 44  -----------------------------------EVLDQLLLIIVGGKKASGSGELRLR 68

Query: 435 IAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-------RRGRTTIFASHRLSA 487
           +A+A A      +L+LDE+ S LD E E  +  +   +        +  T I  ++    
Sbjct: 69  LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128

Query: 488 IQDADMVFVLHDQVIVEKG 506
           +  A +      ++++   
Sbjct: 129 LGPALLRRRFDRRIVLLLI 147


>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
           subunit; Provisional.
          Length = 262

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 30/202 (14%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLI--LRFYDPCSGS-VEIEGIDLRLLS--LE 360
           L  V+  +  GE +AL+G SG+GK+++   +  L   D  +GS +E+ G  ++       
Sbjct: 20  LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79

Query: 361 EIRRFIAWV----PQHPIMIAASVYDNIAIGCPHAT-----------RKEIQNAAMLAQA 405
           +IR+  A       Q  ++   SV +N+ IG   +T           R++ Q A    QA
Sbjct: 80  DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL---QA 136

Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
              +G +   +  +       LS GQ QR+AIARA+++ + ++L DE  ++LD E+ + +
Sbjct: 137 LTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191

Query: 466 WKVLRE--QRRGRTTIFASHRL 485
              LR+  Q  G T +   H++
Sbjct: 192 MDTLRDINQNDGITVVVTLHQV 213


>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
          Length = 590

 Score = 51.0 bits (123), Expect = 7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485
            LS G++QR+AIA A+L+D+     DE  S LDI     + +++RE   G+  +   H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271

Query: 486 SAIQD--ADMVFVL 497
            A+ D  AD V + 
Sbjct: 272 -AVLDYLADNVHIA 284



 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
           LE   D  + D    LS G++QR+AIA  + +D+ + LLDE  + LD+E    + K +R 
Sbjct: 443 LERLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498

Query: 472 --QRRGRTTIFASHRLSAIQ---DADMVF 495
             + R  T +   H +  I    D  MVF
Sbjct: 499 IAEEREATALVVDHDIYMIDYISDRLMVF 527


>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 305

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 44/262 (16%)

Query: 291 RSVSFVYPGKSKRSI--LKNVNFTVQPGETIALVGDSGAGKTSIF----SLILRFYDPCS 344
           +++  ++  K    +  L NV+  +  GE IA++G +G+GKT+      +L+L    P +
Sbjct: 6   KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL----PDT 61

Query: 345 GSV----------------EIEGIDL--------RLLSLEEIRRFIAWVPQHP--IMIAA 378
           G++                E     L        ++  ++EIRR +  V Q     +   
Sbjct: 62  GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121

Query: 379 SVYDNIAIGCPHATRKEIQNAAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAI 437
           ++  +I  G P +     + A   A  + E +G  E+     L      LS GQ +R+A+
Sbjct: 122 TIEKDIIFG-PVSMGVSKEEAKKRAAKYIELVGLDES----YLQRSPFELSGGQKRRVAL 176

Query: 438 ARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRL-SAIQDADMVF 495
           A  +  +   L+ DE  + LD +  ++I ++     ++G+T I  +H L + ++      
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236

Query: 496 VLHDQVIVEKGVHEELLKKSGF 517
              D  I++ G   ++L  + F
Sbjct: 237 FFKDGKIIKDGDTYDILSDNKF 258


>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
           Provisional.
          Length = 352

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 43/227 (18%)

Query: 306 LKNVNFTVQ---PGETI-ALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS--- 358
           L ++  TV    P + I A+ G SGAGKTS+ + I     P  G + + G   R+L    
Sbjct: 10  LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNG---RVLFDAE 66

Query: 359 ----LEEIRRFIAWVPQ------HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408
               L   +R I +V Q      H       V  N+  G            +M+AQ  + 
Sbjct: 67  KGICLPPEKRRIGYVFQDARLFPH-----YKVRGNLRYGM---------AKSMVAQFDKI 112

Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468
           +  L  G + +L      LS G+ QR+AI RA+L    +LL+DE  ++LD+  ++++   
Sbjct: 113 VALL--GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170

Query: 469 LREQRRGRTT----IFASHRLSAI-QDADMVFVLHDQVIVEKGVHEE 510
           L  +R  R      ++ SH L  I + AD V VL    +   G  EE
Sbjct: 171 L--ERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215


>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 289

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 52/247 (21%), Positives = 105/247 (42%), Gaps = 22/247 (8%)

Query: 286 GSVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL-----ILR 338
             +   +VS+ Y  K+  +   L N + T +  +   ++G +G+GK+++  L     I  
Sbjct: 5   KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64

Query: 339 FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEI 396
                 G   I     ++  ++ +R+ I  V Q P   +   ++  +IA G  +    + 
Sbjct: 65  TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124

Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456
           +    + +  + +   E+     +      LS GQ +R+A+A  I  D   L+LDE    
Sbjct: 125 EAYKKVPELLKLVQLPED----YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180

Query: 457 LDIENEQKIWKVLRE--QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKG------V 507
           LD + E+    +     +   +  I  +H +  + + AD V V+H+  ++  G       
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240

Query: 508 HEELLKK 514
           ++ELL K
Sbjct: 241 NQELLTK 247


>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 24/224 (10%)

Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR-FYDPCSGS 346
           +  R+V+F Y   +  S +  +N T++ GE + L+G +G+GK S  +++L   Y P SG 
Sbjct: 323 LELRNVTFAY-QDNGFS-VGPINLTIKRGELLFLIGGNGSGK-STLAMLLTGLYQPQSGE 379

Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
           + ++G  +     E+ R+             ++V+ +  +        E +  A  A   
Sbjct: 380 ILLDGKPVTAEQPEDYRKLF-----------SAVFTDFHL-FDQLLGPEGK-PANPALVE 426

Query: 407 EFIGCLENGYDTILGDGAV---HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
           +++  L+  +   L DG +    LS GQ +R+A+  A+ ++  ILLLDE  +  D    +
Sbjct: 427 KWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486

Query: 464 KIWKVL--REQRRGRTTIFA-SHRLSAIQDADMVFVLHDQVIVE 504
           + ++VL    Q  G+ TIFA SH       AD +  + +  + E
Sbjct: 487 EFYQVLLPLLQEMGK-TIFAISHDDHYFIHADRLLEMRNGQLSE 529



 Score = 28.4 bits (64), Expect = 4.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 10 DVSLYLWGMFVLLLLAVASSLRYYCA-TMLGERMILFMQRDVIAKII 55
             L L     LLLL +A +L    A T LG   +  ++ + I +I+
Sbjct: 46 TSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRIL 92


>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
          Length = 248

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 19/219 (8%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL--RFYDPCSGSVEIEGIDLRLLSLE 360
           ++IL+ +N  V+PGE  A++G +G+GK+++ + +     Y+   G+VE +G DL  LS E
Sbjct: 14  KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73

Query: 361 EIRR-----FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM-----LAQAHEFIG 410
           +  R     F+A+  Q+P+ I             +A R       +          E I 
Sbjct: 74  D--RAGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIA 129

Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470
            L+   D +     V  S G+ +R  I +  + +  + +LDE  S LDI+  + +   + 
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189

Query: 471 EQRRG-RTTIFASH--RLSAIQDADMVFVLHDQVIVEKG 506
             R G R+ I  +H  R+      D V VL+   IV+ G
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein. 
          Length = 1394

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 42/212 (19%)

Query: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL 359
           K KR IL NV+  V+PG   AL+G SGAGKT++ +++    +  +  V   G   RL++ 
Sbjct: 773 KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVL---AERVTTGVITGGD--RLVNG 827

Query: 360 EEI----RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415
             +    +R I +V Q  + +  S             R+ ++ +A L Q        +  
Sbjct: 828 RPLDSSFQRSIGYVQQQDLHLPTS-----------TVRESLRFSAYLRQPKSVSKSEKME 876

Query: 416 Y--------------DTILGDGAVHLSTGQIQRIAIA-RAILKDSPILLLDEMGSALDIE 460
           Y              D ++G     L+  Q +R+ I    + K   +L LDE  S LD  
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD-- 934

Query: 461 NEQKIWKVLREQRR----GRTTIFASHRLSAI 488
             Q  W + +  R+    G+  +   H+ SAI
Sbjct: 935 -SQTAWSICKLMRKLADHGQAILCTIHQPSAI 965



 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 43/228 (18%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKT----SIFSLILRFYDPCSGSVEIEGIDLRLL 357
              ILK ++  ++PGE   ++G  G+G +    +I S    F+    G +  +GI     
Sbjct: 73  TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI----- 127

Query: 358 SLEEIRRF-------IAWVPQH-PIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHE 407
           + EEI++         A    H P +   +V + +  A  C     K  QN        E
Sbjct: 128 TPEEIKKHYRGDVVYNAETDVHFPHL---TVGETLDFAARC-----KTPQNRPDGVSREE 179

Query: 408 FIG----------CLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSA 456
           +             L +  +T +G+  V  +S G+ +R++IA A L  + I   D     
Sbjct: 180 YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRG 239

Query: 457 LDIENEQKIWKVLREQRR-GRTTIFASHRLSAIQDADMVFVLHDQVIV 503
           LD     +  + L+       TT      ++  Q +   + L D+VIV
Sbjct: 240 LDSATALEFIRALKTSANILDTTPL----VAIYQCSQDAYELFDKVIV 283


>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 20/211 (9%)

Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL-RFYDPC-SGSVEIEGIDLRLLSL 359
           +R+IL  V     PGE +A++G SG+GK+++ + +  R      +G++       R  + 
Sbjct: 80  ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTK 136

Query: 360 EEIRRFIAWVPQHPIMIAASVYDNIAIGC-----PHATRKEIQNAAMLAQAHEFIGCLEN 414
           + ++R   +V Q  I+          + C     P +  K+ +     +   E    L  
Sbjct: 137 QILKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL--GLTK 193

Query: 415 GYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-Q 472
             +TI+G+  +  +S G+ +R++IA  +L +  +L+LDE  S LD     ++   L    
Sbjct: 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253

Query: 473 RRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503
           ++G+T + + H     Q +  V+ + D V+V
Sbjct: 254 QKGKTIVTSMH-----QPSSRVYQMFDSVLV 279


>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 195

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 20/198 (10%)

Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
            ++  L +++ T  P     + G +G GK+S+  +I     P SG++  +  ++  ++  
Sbjct: 11  IEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-- 68

Query: 361 EIRRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA--HEFIGCLENGYD 417
             + +  ++  +  + +  +V++N+          EI N+A    A  H F         
Sbjct: 69  --KPYCTYIGHNLGLKLEMTVFENLKFW------SEIYNSAETLYAAIHYF------KLH 114

Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK-VLREQRRGR 476
            +L +    LS+G  + +AIAR I   S + LLDE+ + L  EN   +   ++ +   G 
Sbjct: 115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGG 174

Query: 477 TTIFASHRLSAIQDADMV 494
             + +SH  S+I+ A ++
Sbjct: 175 IVLLSSHLESSIKSAQIL 192


>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
            Members of this protein family have two copies of the
           ABC transporter ATP-binding cassette, but are found
           outside the common ABC transporter operon structure that
           features integral membrane permease proteins and
           substrate-binding proteins encoded next to the
           ATP-binding cassette (ABC domain) protein. The member
           protein ChvD from Agrobacterium tumefaciens was
           identified as both a candidate to interact with VirB8,
           based on yeast two-hybrid analysis, and as an apparent
           regulator of VirG. The general function of this protein
           family is unknown.
          Length = 552

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 52/203 (25%)

Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGI 352
           VS V P K  + ILK+++ +  PG  I ++G +GAGK    S +LR          + G+
Sbjct: 10  VSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGK----STLLRI---------MAGV 54

Query: 353 DLRLLSLEEIRRF----IAWVPQHPIM-IAASVYDNIAIGCPHATRK------------- 394
           D       E R      + ++PQ P +    +V +N+  G                    
Sbjct: 55  DKEFNG--EARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE 112

Query: 395 -------------EIQNAAMLAQAHEFIGCLENGYDTIL---GDGAV-HLSTGQIQRIAI 437
                        E+Q     A A +    LE   D +     D  V  LS G+ +R+A+
Sbjct: 113 PDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVAL 172

Query: 438 ARAILKDSPILLLDEMGSALDIE 460
            R +L    +LLLDE  + LD E
Sbjct: 173 CRLLLSKPDMLLLDEPTNHLDAE 195



 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 30/187 (16%)

Query: 281 PSPVLGS--VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338
           P P LG   +   ++S  +     + ++ +++F + PG  + ++G +GAGK+++F +I  
Sbjct: 314 PGPRLGDKVIEAENLSKGF---GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370

Query: 339 FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHAT--RKEI 396
              P SG+++I G  ++L  +++ R  +   P        +V++ I+ G       ++E+
Sbjct: 371 QEQPDSGTIKI-GETVKLAYVDQSRDALD--PNK------TVWEEISGGLDIIQLGKREV 421

Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDG---AVHLSTGQIQRIAIARAILKDSPILLLDEM 453
            + A +     F G           D       LS G+  R+ +A+ +     +LLLDE 
Sbjct: 422 PSRAYVG-RFNFKG----------SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470

Query: 454 GSALDIE 460
            + LD+E
Sbjct: 471 TNDLDVE 477


>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
           Family protei. 
          Length = 659

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 20/183 (10%)

Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369
           +F V  G  + + G +G GK+S+F ++   + P  G         RL    + + F  +V
Sbjct: 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGG--------RLTKPAKGKLF--YV 520

Query: 370 PQHPIMIAASVYDNI--AIGCPHATRKEIQNA---AMLAQAH-EFIGCLENGYDTILGDG 423
           PQ P M   ++ D I          R+ + +     +L       I   E G+   + D 
Sbjct: 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS-AVQDW 579

Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASH 483
              LS G+ QRIA+AR         +LDE  SA+ ++ E  ++++ RE   G T    SH
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSH 637

Query: 484 RLS 486
           R S
Sbjct: 638 RKS 640


>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 200

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 25/196 (12%)

Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
           +L+ ++F +  G  + L G +GAGKT++  LI    +P  G +  E         + I++
Sbjct: 16  LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER--------QSIKK 67

Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKE-------IQNAAMLAQAHEFIGCLENGYD 417
            +    +    +      N     P+ T +E           A+       +  LE+  D
Sbjct: 68  DLCTYQKQLCFVGHRSGIN-----PYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID 122

Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGR 476
              G     LS+GQ +++A+ R  +  + + LLDE   ALD  +   I   ++E R +G 
Sbjct: 123 YPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178

Query: 477 TTIFASHRLSAIQDAD 492
             +  SH+   +  AD
Sbjct: 179 AVLLTSHQDLPLNKAD 194


>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
           Provisional.
          Length = 330

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 69/251 (27%)

Query: 310 NFTVQPGETIALVGDSGAGKT-SIFSL--ILRFYDPCSGSVEIEGIDLRLLSLEEIRRF- 365
           NF+++ GET+ +VG+SG+GK+ + F+L  +L       GS    G ++  L  +E+ +  
Sbjct: 36  NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLR 95

Query: 366 ---IAWVPQHPIMIAASVYDNI----------------------------AIGCPHATRK 394
              I+ + Q P M + + Y  +                            A+  P A RK
Sbjct: 96  AEQISMIFQDP-MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA-RK 153

Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454
                 M    HEF G                   G  QR+ IA A+L    +L+ DE  
Sbjct: 154 R-----MKMYPHEFSG-------------------GMRQRVMIAMALLCRPKLLIADEPT 189

Query: 455 SALDIENEQKIWKVLREQRRGRTT--IFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511
           +ALD+  + +I  +L E +R   T  I  +H L  +    D V V++    +E G   ++
Sbjct: 190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249

Query: 512 LKKSGFYAHYH 522
                FY   H
Sbjct: 250 -----FYQPSH 255


>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
           ATP-binding protein; Provisional.
          Length = 330

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 38/232 (16%)

Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLI--------------LRFYDPCSGSVEIEGIDL 354
           V+ T+  GE   LVG+SG+GK+ I   I              +RF D          IDL
Sbjct: 26  VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD----------IDL 75

Query: 355 RLLSLEEIRRFIA-------WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407
             LS  E R+ +          PQ  +  +  V   +    P  T K         +   
Sbjct: 76  LRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRR 135

Query: 408 FIGCLE----NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463
            I  L       +   +      L+ G+ Q++ IA A+     +L+ DE  +A++   + 
Sbjct: 136 AIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQA 195

Query: 464 KIWKVLRE--QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEELL 512
           +I+++L    Q    T +  SH L  + Q AD + VL+    VE    +EL+
Sbjct: 196 QIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247


>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
           Provisional.
          Length = 638

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 63/253 (24%), Positives = 100/253 (39%), Gaps = 62/253 (24%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
           R +L N   T+ PG+ + LVG +G GK+++ +L+        GS    G           
Sbjct: 14  RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----------- 62

Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE-----FIGCLENGYD 417
              +AWV Q    +     + +  G     R+  Q  A L  A+E      I  +    D
Sbjct: 63  NWQLAWVNQETPALPQPALEYVIDG----DREYRQLEAQLHDANERNDGHAIATIHGKLD 118

Query: 418 TI---------------LGDGAVHL-------STGQIQRIAIARAILKDSPILLLDEMGS 455
            I               LG     L       S G   R+ +A+A++  S +LLLDE  +
Sbjct: 119 AIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTN 178

Query: 456 ALDIENEQKIW--KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVH---EE 510
            LD+  +  IW  K L+  +   T I  SH      D D +       IV+K +H   + 
Sbjct: 179 HLDL--DAVIWLEKWLKSYQ--GTLILISH------DRDFL-----DPIVDKIIHIEQQS 223

Query: 511 LLKKSGFYAHYHI 523
           L + +G Y+ + +
Sbjct: 224 LFEYTGNYSSFEV 236



 Score = 37.8 bits (88), Expect = 0.006
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 279 TFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338
           + P+P+L       +  V  G   R IL ++   + PG  I L+G +GAGK+++  L+  
Sbjct: 307 SLPNPLL------KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360

Query: 339 FYDPCSGSVEI-EGIDL 354
              P SG + + +GI L
Sbjct: 361 ELAPVSGEIGLAKGIKL 377


>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
           Provisional.
          Length = 549

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 40/196 (20%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE----------GIDLR 355
           L N++F V  GE + ++G +G+GK+++ +LI     P  G+V+I+          G++ +
Sbjct: 40  LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99

Query: 356 LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM-LAQAHEFIGCLEN 414
           L  +E I                     + +G      KEI    +  A   +FI     
Sbjct: 100 LTGIENIE-----------------LKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVK 142

Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QR 473
            Y           S+G   R+  A ++  +  IL++DE  S  D    +K    + E + 
Sbjct: 143 TY-----------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE 191

Query: 474 RGRTTIFASHRLSAIQ 489
           +G+T  F SH LS ++
Sbjct: 192 QGKTIFFISHSLSQVK 207


>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
          Length = 1470

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 24/202 (11%)

Query: 299  GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE---IEGIDLR 355
             + +  +L+ V    +PG   AL+G SGAGKT++        D  +G      IEG D+R
Sbjct: 889  TEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIR 940

Query: 356  LLSL----EEIRRFIAWVPQHPI-----MIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406
            +       E   R   +  Q+ I      +  S+  +  +  P    KE +    + +  
Sbjct: 941  ISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKE-EKMMFVDEVM 999

Query: 407  EFIGCLENGYDTILG-DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
            E +  L+N  D I+G  G   LST Q +R+ IA  ++ +  I+ +DE  S LD      +
Sbjct: 1000 ELVE-LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058

Query: 466  WKVLREQ-RRGRTTIFASHRLS 486
             + +R     GRT +   H+ S
Sbjct: 1059 MRTVRNTVDTGRTVVCTIHQPS 1080



 Score = 33.7 bits (77), Expect = 0.11
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 417 DTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRR 474
           DTI+GD  +  +S GQ +R+     I+  +  L +DE+ + LD     +I K L++    
Sbjct: 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385

Query: 475 GRTTIFASHRLSAIQDADMVFVLHDQVIV 503
              T+     +S +Q A   F L D +I+
Sbjct: 386 TEATVL----MSLLQPAPETFDLFDDIIL 410


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 15/45 (33%), Positives = 30/45 (66%)

Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
             + KN+N  ++ GE +A++G++G GKT++   ++   +P SG+V
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376



 Score = 30.2 bits (69), Expect = 1.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 434 RIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASH 483
           R+ +A+A+  +  ILLLDE  + LDI   + +  VL E  R  T I  SH
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISH 210


>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
           Reviewed.
          Length = 556

 Score = 37.4 bits (88), Expect = 0.008
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 9/73 (12%)

Query: 281 PSPVLGS--VSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI 336
           P P LG   +   ++S     KS   R ++ +++F++ PG  + ++G +GAGK+++F +I
Sbjct: 316 PGPRLGDKVIEAENLS-----KSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMI 370

Query: 337 LRFYDPCSGSVEI 349
                P SG+++I
Sbjct: 371 TGQEQPDSGTIKI 383



 Score = 36.3 bits (85), Expect = 0.023
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSI 332
           VS V P K  + ILK+++ +  PG  I ++G +GAGK+++
Sbjct: 12  VSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTL 49



 Score = 30.9 bits (71), Expect = 0.78
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 421 GDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
            D  V  LS G+ +R+A+ R +L+   +LLLDE  + LD E
Sbjct: 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197


>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
           subunit; Provisional.
          Length = 264

 Score = 37.1 bits (86), Expect = 0.010
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 38/196 (19%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE----------GIDLR 355
           L +++     G+ I LVG +G+GK+++ ++I     P  G V+            G+  +
Sbjct: 40  LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99

Query: 356 LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415
           L  +E I                       + C    RKEI+  AM  +  EF    E  
Sbjct: 100 LTGIENIE--------------------FKMLCMGFKRKEIK--AMTPKIIEFSELGEFI 137

Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK-IWKVLREQRR 474
           Y  +        S+G   ++  +  I  +  IL++DE  S  D    QK + K+   + +
Sbjct: 138 YQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192

Query: 475 GRTTIFASHRLSAIQD 490
            +T  F SH L  ++ 
Sbjct: 193 NKTIFFVSHNLGQVRQ 208


>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
          Length = 356

 Score = 34.1 bits (79), Expect = 0.087
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 313 VQPGETIALVGDSGAGKTSI 332
           +  G+T+AL+G SG GK+++
Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211


>gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal
           protein S1; Provisional.
          Length = 863

 Score = 33.1 bits (75), Expect = 0.16
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)

Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGET--IALVGDSGAGKTSIFSLIL-RFYDPCSGSV 347
           R  SFV+P     ++        +P  T  IAL G +G+GK+S+  L+  R    C  + 
Sbjct: 7   RERSFVHPRTRCVAVRARTVLQCRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNT- 65

Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC---PHATRKEIQNAAMLAQ 404
              G   R  +L  +RR      Q     + S   + A+GC   PHAT  +   A + AQ
Sbjct: 66  ---GSFYRAFTLAALRRVSELAVQ---ACSPSPDPDAAVGCAAVPHATNLDTSYAPLTAQ 119


>gnl|CDD|129694 TIGR00606, rad50, rad50.  This family is based on the phylogenomic
            analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
            University).
          Length = 1311

 Score = 31.9 bits (72), Expect = 0.40
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 27/99 (27%)

Query: 421  GDGAVHL----STGQ------IQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL- 469
            GD A+ +    S GQ      I R+A+A     +  I+ LDE  + LD EN + +   L 
Sbjct: 1190 GDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALV 1249

Query: 470  ---REQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEK 505
               + + + R             +  ++ + HD+  VE 
Sbjct: 1250 EIIKSRSQQR-------------NFQLLVITHDEDFVEL 1275


>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 31.7 bits (72), Expect = 0.54
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSI 332
           LKN++    P E + L G SG+GK+S+
Sbjct: 16  LKNISIEFCPREIVLLTGVSGSGKSSL 42



 Score = 30.2 bits (68), Expect = 1.5
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 420 LGDGAVHLSTGQIQRIAIARAILKDSP---ILLLDEMGSALDIENEQKIWKVLRE-QRRG 475
           LG     LS G+IQR+ +A  +L  S    + +LDE  + L   + + +  VL+    +G
Sbjct: 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862

Query: 476 RTTIFASHRLSAIQDADMVFVL 497
            T +   H +  ++ AD V  L
Sbjct: 863 HTVVIIEHNMHVVKVADYVLEL 884



 Score = 29.8 bits (67), Expect = 1.9
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 420  LGDGAVHLSTGQIQRIAIARAIL---KDSPILLLDEMGSALDIENEQKIWKVLREQ-RRG 475
            LG     LS  +   I IA+ +    K   + LLDE+ ++LD + +  +   LR     G
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752

Query: 476  RTTIFASHRLSAIQDAD 492
             + I+  H  + ++ AD
Sbjct: 1753 HSVIYIDHDPALLKQAD 1769


>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
            archaeal type.  SMC (structural maintenance of
            chromosomes) proteins bind DNA and act in organizing and
            segregating chromosomes for partition. SMC proteins are
            found in bacteria, archaea, and eukaryotes. It is found
            in a single copy and is homodimeric in prokaryotes, but
            six paralogs (excluded from this family) are found in
            eukarotes, where SMC proteins are heterodimeric. This
            family represents the SMC protein of archaea and a few
            bacteria (Aquifex, Synechocystis, etc); the SMC of other
            bacteria is described by TIGR02168. The N- and C-terminal
            domains of this protein are well conserved, but the
            central hinge region is skewed in composition and highly
            divergent.
          Length = 1164

 Score = 31.2 bits (71), Expect = 0.68
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 441  ILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDAD 492
              K SP    DE+   LD  N +++ K++RE+      I  S R   I+ AD
Sbjct: 1093 RYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYAD 1144


>gnl|CDD|184938 PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase;
           Provisional.
          Length = 553

 Score = 31.1 bits (71), Expect = 0.71
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 484 RLSAIQDADMVFVLHDQVIVE 504
           RL+   DA++VF +HD+V+VE
Sbjct: 489 RLAEGLDAELVFFVHDEVVVE 509


>gnl|CDD|185327 PRK15429, PRK15429, formate hydrogenlyase transcriptional activator
           FhlA; Provisional.
          Length = 686

 Score = 30.2 bits (68), Expect = 1.5
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 15/88 (17%)

Query: 435 IAIARAILKDSPILLLDEMGSALDIE-----NEQKIWKVLREQRRGRTTIFASHRLSAIQ 489
           +AI  A+L     L +DE+ S +  E     +   I  VLR  R+ +  I+++H L    
Sbjct: 188 VAITNAVLSR---LDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYL---- 240

Query: 490 DADMVFVLHDQVIV-EKGVHEELLKKSG 516
             D     H+Q  V E G   E + KS 
Sbjct: 241 --DKQHPAHEQSEVDEAGTLTERVFKSK 266


>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase.  Members of this family
           are the enzyme guanylate kinase, also called GMP kinase.
           This enzyme transfers a phosphate from ATP to GMP,
           yielding ADP and GDP.
          Length = 180

 Score = 29.8 bits (68), Expect = 1.6
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGSV----------EIEGIDLRLLSLEEIRRFIA 367
           I + G SG GK+++   +L        S+          E++G+D   +S EE    IA
Sbjct: 4   IVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIA 62


>gnl|CDD|173315 PTZ00014, PTZ00014, myosin-A; Provisional.
          Length = 821

 Score = 30.0 bits (68), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 317 ETIALVGDSGAGKTSIFSLILRFY 340
           +TI + G+SGAGKT     I+R++
Sbjct: 184 QTIIVSGESGAGKTEATKQIMRYF 207


>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
          Length = 334

 Score = 29.8 bits (67), Expect = 1.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 321 LVGDSGAGKTSIFSLILR 338
           +VGDSG GK+S+  LI++
Sbjct: 26  VVGDSGVGKSSLVHLIVK 43


>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
           Provisional.
          Length = 559

 Score = 29.6 bits (66), Expect = 1.9
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 312 TVQP---GETIALVGDSGAGK-TSIFSLILRF 339
            V P   G  IALVG +GAGK T+I  L  RF
Sbjct: 343 PVDPLERGGVIALVGPTGAGKTTTIAKLAQRF 374


>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
          Length = 361

 Score = 29.7 bits (68), Expect = 1.9
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 11/42 (26%)

Query: 427 LSTGQIQR---IAI----ARAILKDS---PILLLDEMGSALD 458
            STGQ Q+   +A+    A  + +++   PILLLD++ S LD
Sbjct: 274 GSTGQ-QKLLLLALKLAEAELLKEETGEAPILLLDDVASELD 314


>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
            bacterial type.  SMC (structural maintenance of
            chromosomes) proteins bind DNA and act in organizing and
            segregating chromosomes for partition. SMC proteins are
            found in bacteria, archaea, and eukaryotes. This family
            represents the SMC protein of most bacteria. The smc gene
            is often associated with scpB (TIGR00281) and scpA genes,
            where scp stands for segregation and condensation
            protein. SMC was shown (in Caulobacter crescentus) to be
            induced early in S phase but present and bound to DNA
            throughout the cell cycle.
          Length = 1179

 Score = 29.6 bits (67), Expect = 2.0
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 427  LSTGQIQRIAIAR--AIL--KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482
            LS G+    A+A   AI   K +P  +LDE+ + LD  N ++   +L+E  +    I  +
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVIT 1149

Query: 483  HRLSAIQDADMVFVLHDQVIVEKGV 507
            H    ++ AD    L+   + EKGV
Sbjct: 1150 HNKGTMEVADQ---LYGVTMQEKGV 1171


>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha; Provisional.
          Length = 762

 Score = 29.4 bits (66), Expect = 2.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIAR 439
           I  LE+ Y   L D   HL+   IQR+ IAR
Sbjct: 128 IISLESKYQQALKDLYTHLTP--IQRVNIAR 156


>gnl|CDD|183249 PRK11637, PRK11637, AmiB activator; Provisional.
          Length = 428

 Score = 29.3 bits (66), Expect = 2.7
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 304 SILKNVNFTVQPGETIALVGDSGA-GKTSIFSLILR 338
           S L +V   V+ G+ IALVG SG  G+ S++  I R
Sbjct: 380 SALVSVGAQVRAGQPIALVGSSGGQGRPSLYFEIRR 415


>gnl|CDD|161878 TIGR00437, feoB, ferrous iron transporter FeoB.  FeoB (773 amino
           acids in E. coli), a cytoplasmic membrane protein
           required for iron(II) update, is encoded in an operon
           with FeoA (75 amino acids), which is also required, and
           is regulated by Fur. There appear to be two copies in
           Archaeoglobus fulgidus and Clostridium acetobutylicum.
          Length = 591

 Score = 28.9 bits (65), Expect = 2.9
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 168 EAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKL 227
               + D       K   R  L R       +F +     + FL+G   V   E     L
Sbjct: 226 SPTEIADEDRVLVEKSIGRKILDRFLGLPIFLFVMFILFLLTFLVGQPLVDLIETGFSFL 285

Query: 228 AEFVVYAFIFFASIRSCL--GFIGGI 251
           +E  V +FI    + S L  G IGG+
Sbjct: 286 SE-AVKSFIGNYWLASLLGDGLIGGV 310


>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC.  This family is based on the
           phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
           Stanford University).
          Length = 1042

 Score = 28.8 bits (64), Expect = 3.9
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 10/46 (21%)

Query: 300 KSKRSILKNVN---------FTVQPGETIALVGDSGAGKTSIFSLI 336
           K  R  LKN           FT        + G +GAGKT++   I
Sbjct: 2   KPLRLTLKNFGSYKGTHTIDFTALGP-IFLICGKTGAGKTTLLDAI 46


>gnl|CDD|180613 PRK06545, PRK06545, prephenate dehydrogenase; Validated.
          Length = 359

 Score = 28.7 bits (65), Expect = 4.1
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 449 LLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVL-HDQVIVEKGV 507
            LD    AL+  + + I ++    + GR  +       AI     ++V   D+  V   V
Sbjct: 249 DLDRARDALESGDAEAIAELFDAGKAGRDRL-PGKHGGAIPSFYDLYVDVPDEPGVIARV 307

Query: 508 HEEL 511
              L
Sbjct: 308 TAIL 311


>gnl|CDD|132060 TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM
           locus subfamily.  Members of this protein are marked as
           probable ATPases by the nucleotide binding P-loop motif
           GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of
           helicases, and extensive homology to ATPases of
           MSHA-type pilus systems and to GspA proteins associated
           with type II protein secretion systems.
          Length = 269

 Score = 28.5 bits (64), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 294 SFVYPGKSKRSILKNVNFTVQPGET-IALVGDSGAGKTSIFSLILRFYDP 342
            F YP K  +  +  + + +   E  I + G+ GAGKT++   +L+  D 
Sbjct: 20  DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69


>gnl|CDD|148992 pfam07693, KAP_NTPase, KAP family P-loop domain.  The KAP (after
           Kidins220/ARMS and PifA) family of predicted NTPases are
           sporadically distributed across a wide phylogenetic
           range in bacteria and in animals. Many of the
           prokaryotic KAP NTPases are encoded in plasmids and tend
           to undergo disruption to form pseudogenes. A unique
           feature of all eukaryotic and certain bacterial KAP
           NTPases is the presence of two or four transmembrane
           helices inserted into the P-loop NTPase domain. These
           transmembrane helices anchor KAP NTPases in the membrane
           such that the P-loop domain is located on the
           intracellular side.
          Length = 301

 Score = 28.1 bits (63), Expect = 5.3
 Identities = 29/163 (17%), Positives = 44/163 (26%), Gaps = 26/163 (15%)

Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAW 368
           V  ++ PG  I L G  G+GKTS  +L+            I   D              W
Sbjct: 13  VEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHIVYFD-------------PW 59

Query: 369 VPQHPIMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHL 427
           +        AS+   +A       +    +           IG          G G    
Sbjct: 60  LFSGQDDAVASLLAALADALEEEYSALATKLLIGKKLLALVIGA---KIGGNFGVGTALA 116

Query: 428 STGQIQRIAIARAI---------LKDSPILLLDEMGSALDIEN 461
            TG +  +               L+     L  ++ S LD   
Sbjct: 117 LTGLVASVEGKSLKLLSIEPLKKLQTEIEELRTDIASTLDDLQ 159


>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional.
          Length = 216

 Score = 28.0 bits (62), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 319 IALVGDSGAGKTSIFSLILR 338
           I L+GDSG GK++I S   R
Sbjct: 15  IVLIGDSGVGKSNILSRFTR 34


>gnl|CDD|128472 smart00175, RAB, Rab subfamily of small GTPases.  Rab GTPases are
           implicated in vesicle trafficking.
          Length = 164

 Score = 28.2 bits (64), Expect = 5.7
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)

Query: 319 IALVGDSGAGKTSIFSLILRF 339
           I L+GDSG GK+   SL+ RF
Sbjct: 3   IILIGDSGVGKS---SLLSRF 20


>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
          Length = 205

 Score = 28.1 bits (64), Expect = 6.5
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 25/81 (30%)

Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGSV----------EIEGIDLRLLSLEEIRR---- 364
           I L G SGAGK+++   +L        SV          E++G+D   +S EE       
Sbjct: 8   IVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIEN 67

Query: 365 --FIAWVPQHPIMIAASVYDN 383
             F+ W         A V+ N
Sbjct: 68  GEFLEW---------AEVFGN 79


>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
          Length = 327

 Score = 28.1 bits (63), Expect = 6.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 319 IALVGDSGAGKTSI 332
           + + GDSG GKT+ 
Sbjct: 11  LGVAGDSGCGKTTF 24


>gnl|CDD|161885 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE.  TrmE,
           also called MnmE and previously designated ThdF
           (thiophene and furan oxidation protein), is a GTPase
           involved in tRNA modification to create
           5-methylaminomethyl-2-thiouridine in the wobble position
           of some tRNAs. This protein and GidA form an
           alpha2/beta2 heterotetramer.
          Length = 442

 Score = 27.8 bits (62), Expect = 6.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 316 GETIALVGDSGAGKTSIFSLILR------------FYDPCSGSVEIEGIDLRLLSLEEIR 363
           G  +A+VG    GK+S+ + +L+              D   G  E+ GI ++LL    IR
Sbjct: 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIR 262


>gnl|CDD|149505 pfam08477, Miro, Miro-like protein.  Mitochondrial Rho proteins
           (Miro-1 and Miro-2), are atypical Rho GTPases. They have
           a unique domain organisation, with tandem GTP-binding
           domains and two EF hand domains (pfam00036), that may
           bind calcium. They are also larger than classical small
           GTPases. It has been proposed that they are involved in
           mitochondrial homeostasis and apoptosis.
          Length = 118

 Score = 27.8 bits (62), Expect = 7.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
           + ++GD G+GK+S+ S ++    P     EI+G  L + +LE
Sbjct: 2   VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLE 43


>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
          Length = 175

 Score = 27.7 bits (62), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 313 VQPGETIALVGDSGAGKTSI 332
            Q G T+   G SGAGKT+I
Sbjct: 1   KQRGVTVWFTGLSGAGKTTI 20


>gnl|CDD|162247 TIGR01198, pgl, 6-phosphogluconolactonase.  This enzyme of the
           pentose phosphate pathway is often found as a part of a
           multifunctional protein with.
          Length = 233

 Score = 27.7 bits (62), Expect = 7.8
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 262 RELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGET-IA 320
           R + V       P    T   P + +   R V  +  G+ KR+ L      V+     + 
Sbjct: 155 RLVTVLTKSPKPPHERITLTLPAINAA--RKVFLLIAGEEKRNALAEA-LAVEAEPYPLP 211

Query: 321 LVGDSGAGKTSIF 333
             G   +GKT   
Sbjct: 212 AAGVLHSGKTLWL 224


>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain.  This model
           recognizes a large number of small GTP-binding proteins
           and related domains in larger proteins. Note that the
           alpha chains of heterotrimeric G proteins are larger
           proteins in which the NKXD motif is separated from the
           GxxxxGK[ST] motif (P-loop) by a long insert and are not
           easily detected by this model.
          Length = 161

 Score = 27.7 bits (62), Expect = 7.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 319 IALVGDSGAGKTSIFSLILR 338
           I +VGD   GK+++ + +L 
Sbjct: 4   IVIVGDPNVGKSTLLNRLLG 23


>gnl|CDD|163200 TIGR03285, methan_mark_14, putative methanogenesis marker protein
           14.  Members of this protein family, to date, are found
           in a completed prokaryotic genome if and only if the
           species is one of the archaeal methanogens. The exact
           function is unknown, but likely is linked to
           methanogenesis or a process closely connected to it.
          Length = 445

 Score = 27.5 bits (61), Expect = 8.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 436 AIARAILKDSPILLLDEMGSALDIENEQK----IWKVLRE 471
           AI  AI++   ++  + MG+ALD+ N+Q       K  RE
Sbjct: 228 AIPDAIIRGCGVID-ERMGAALDLANKQNPPQFNEKKARE 266


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,623,964
Number of extensions: 582562
Number of successful extensions: 2544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2285
Number of HSP's successfully gapped: 373
Length of query: 528
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 430
Effective length of database: 3,876,889
Effective search space: 1667062270
Effective search space used: 1667062270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.7 bits)