BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family,
fused ATPase and inner membrane subunits [Candidatus Liberibacter
asiaticus str. psy62]
(528 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/528 (100%), Positives = 528/528 (100%)
Query: 1 MTSVFLDKRDVSLYLWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPS 60
MTSVFLDKRDVSLYLWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPS
Sbjct: 1 MTSVFLDKRDVSLYLWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPS 60
Query: 61 FFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI 120
FFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI
Sbjct: 61 FFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI 120
Query: 121 VTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKT 180
VTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKT
Sbjct: 121 VTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKT 180
Query: 181 YKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFAS 240
YKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFAS
Sbjct: 181 YKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFAS 240
Query: 241 IRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGK 300
IRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGK
Sbjct: 241 IRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGK 300
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE
Sbjct: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
Query: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL
Sbjct: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIF 480
GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIF
Sbjct: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIF 480
Query: 481 ASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMSQ 528
ASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMSQ
Sbjct: 481 ASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMSQ 528
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 197 bits (502), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 145/513 (28%), Positives = 252/513 (49%), Gaps = 37/513 (7%)
Query: 26 VASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAII 85
+++ +R + +G+ + V++ + KLS F + G++ S + I+ II
Sbjct: 92 ISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMII 151
Query: 86 GIGMSIVLRSLLMGFGAMCMMFVI----SIKLSLIVVSIVTLFLMVMIK------FSRKK 135
I + + L ++ F A+ M F+ I +S++ V+++ +I S+K
Sbjct: 152 RI-IVVHLIPTILEF-AISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKM 209
Query: 136 TNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIA 195
N L+ K+ D + + +Q FN+ K ++I + Y + + I +
Sbjct: 210 NNLLHECHAKVF----DTLINFETIQYFNSEK-----FEINRLEKYISKYKESAISVATS 260
Query: 196 CFVIFF-----VSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGG 250
+ F S G+ I +I +H V E G V+ + L +G
Sbjct: 261 LGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDF----VFINTLLTQLAIPLNILGT 316
Query: 251 I----SQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSIL 306
I Q+ + L ++ K++I + ++S+ G + F +VSF Y I
Sbjct: 317 IYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKN-GHIVFNNVSFSY--NHHNCIF 373
Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFI 366
K ++F + P + AL+G+SG GK+++ L+ R YD G + I+G D++ ++ E +R+ I
Sbjct: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
Query: 367 AWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH 426
+PQ I+ ++ NI G P+A+ +E+ A +AQ FI L NGYDT++G+ +
Sbjct: 434 GIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK 493
Query: 427 LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLS 486
LS G+ QR++IARAILK+ PI++ DE S+LDI E+ I L + RTT+ +HRLS
Sbjct: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLS 553
Query: 487 AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519
I DAD + V +VE G HE L+ + G Y
Sbjct: 554 TITDADNIIVFDQGTVVESGSHENLISQGGIYT 586
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 186 bits (471), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 142/229 (62%), Gaps = 2/229 (0%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
G+ FR V F Y K +L +N + G+ ALVG SG+GK++I +L++R YDP SG
Sbjct: 351 GTTVFRDVFFSY--KQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSG 408
Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405
S+EI+GI++R ++ +R I++V Q + + +V NI IG P AT +E+ A A A
Sbjct: 409 SIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANA 468
Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465
H+FI L GYDT +G+ +LS GQ QRIAIARA+L+D IL+LDE SALD E +
Sbjct: 469 HDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
Query: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514
+ L +GRTTI +HR+S I +AD + + D + E G + LL++
Sbjct: 529 RQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 11 VSLYLWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEI 70
VS + G+F++ +AS ++ Y + G +I QR + ++++ F++S E+
Sbjct: 75 VSSTVAGIFIVK--GIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSEL 132
Query: 71 FSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI 120
T+ +++++ I ++ LR L G + +MF+ LSL + I
Sbjct: 133 QVRFTHATQSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIII 182
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Query: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL 359
K+ R I +N++FT+ G + G SG GK++ +L G++ R +S
Sbjct: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISR 398
Query: 360 EEIRRF---IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416
+ I +F I ++ QH + S+ +NI + + Q A + HE I L+NGY
Sbjct: 399 DFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458
Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476
T + + +Q+I ++R I + ILL+DE LD E + + +L++ + +
Sbjct: 459 QTTYCSDEIPYNI--VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
Query: 477 TTI-FASHRLSAIQDADMVFVLH 498
TI SH + I +D + H
Sbjct: 517 KTIVIISHDPTIISMSDFSLIFH 539
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 70.1 bits (170), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 11/221 (4%)
Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369
+F V E I ++G SGAGK+++ SL+ F P GS+ + G + S R
Sbjct: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILF 77
Query: 370 PQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLST 429
++ + +V+ NIA+G R + A + Q E + LE+ ++ +S
Sbjct: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKV-FLEDFFNRF----PSQMSG 132
Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRL-S 486
GQ QR+A+AR +++ PILLLDE + D +I +L++ R T + SH L
Sbjct: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192
Query: 487 AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMS 527
++Q A V+ IV G + L+ +G +LG+
Sbjct: 193 SMQIATRFIVIAGGQIVYDGDPDRLM--NGLIPESTLLGIP 231
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY---DPC--SGSVEIEGIDLR 355
KR++ ++N + AL+G SG GK++ + R D C +G + ++G ++
Sbjct: 18 EKRALF-DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
Query: 356 LLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGC 411
S++ +R + V Q P S+YDN+A G P H + + +
Sbjct: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYG-PRIHGLGNNKADIDQIVEMSLKKAS 135
Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471
L N L A LS GQ QR+ IARA+ + ++L+DE SALD + +++ E
Sbjct: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
Query: 472 QRRGRTTIFASHRL 485
R T + +H +
Sbjct: 196 LRESLTIVIVTHSM 209
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347
+S + SF K+ IL+++NFT++P E + L+G +G+GK++I LI P GSV
Sbjct: 11 ISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIM---IAASVYDNIAIGCPHATRKEIQNAAMLAQ 404
+ + + +VPQ + + S+ + + P + +Q +
Sbjct: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ----ILD 112
Query: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464
IG Y+ + D LS G+ QR +A+A+L+ +L+LDE +D E
Sbjct: 113 RVNLIG----KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
Query: 465 IWKVLREQRR--GRTTIFASHRLSAIQ-DADMVFVLHDQV 501
+++++ R+ G + SH L + D V L++++
Sbjct: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRI 204
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 21/253 (8%)
Query: 272 SSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTS 331
++PI+S+ P + F+ L+++N V GE + + G SG+GK++
Sbjct: 3 NTPINSKNPPKNNFAV----EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKST 58
Query: 332 IFSLILRFYDPCSGSVEIEGIDLR--LLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGC 388
+ I +G + I GI L + ++ E+RR + V QH + + SV +N +G
Sbjct: 59 LIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLG- 117
Query: 389 PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA----VHLSTGQIQRIAIARAILKD 444
P RK + A H ++ ++ + D + LS G+ QR AIAR++
Sbjct: 118 PIWVRKMPKKDAEELAMH-YLNKVK------IADKSHRSSSLLSGGESQRAAIARSLCMQ 170
Query: 445 SPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVI 502
I+L DE SALD E +++ ++ E G T + +H + A Q AD V + I
Sbjct: 171 PKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
Query: 503 VEKGVHEELLKKS 515
VE+ EE
Sbjct: 231 VEQNSPEEFFNNP 243
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 11/216 (5%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
++K V+ V+PGE + L+G +GAGKT+ F ++ SGS++I+G D+ + + R
Sbjct: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
Query: 365 F-IAWVPQHP-IMIAASVYDNI-AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421
I+++PQ I +V +NI A+ + K+ ++ + + EF + +L
Sbjct: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN---ITKWRHVL- 155
Query: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIF 480
A LS GQ +R+ IAR+++ +LLDE + +D I ++R+ RG +
Sbjct: 156 --APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILI 213
Query: 481 ASHRLSAIQDA-DMVFVLHDQVIVEKGVHEELLKKS 515
H + I D +++H ++ G +E++
Sbjct: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 58.2 bits (139), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 30/229 (13%)
Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348
S+R V +P +L+NV+ +++ GE +ALV SG GK++I + P G+V
Sbjct: 15 SYRQVGKPFP------VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
Query: 349 IEGIDLRLLSLEEIRRF-----IAWVPQ-HPIMIAASVYDNIAI-----GCPHATRKEIQ 397
I LS ++ + F I +V Q H +++ SV +NI G H T +
Sbjct: 69 IANQLCNKLS-DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ-- 125
Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
+A + + ++ + +S G+ QR+AI RAI I+L DE L
Sbjct: 126 ------RAMDLLSYMD--MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
Query: 458 DIENEQKIWKVLREQ--RRGRTTIFASHRLSAIQDADMVFVLHDQVIVE 504
D++ Q+++ +L+ R G + A+H D + D +I +
Sbjct: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
+L VNF V GE + L+G SG+GK+++ +I P SG V +G ++ + +
Sbjct: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86
Query: 365 FIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
I+ V Q + +V +N+ +G + + A + IG +G+++
Sbjct: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL--DGFESA---H 141
Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
+S G +QR+ ARA + +LL+DE SALD+
Sbjct: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 29/193 (15%)
Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
G + + +S YP + L++VN + AL+G +GAGK+++F I+ G
Sbjct: 10 GGLELKDISVTYP--NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
Query: 346 SVEI--EGIDLRLLSLEEIRRFIAWVPQH-------PIMIAASVYDNIAIGCPHATRKEI 396
S+ I + ++ L + IA++PQ PI+ V D + +G R +
Sbjct: 68 SISIFNQTVENALKA-----DLIAYIPQTESIDWTFPIL----VEDVVMMG-----RYKH 113
Query: 397 QNAAMLAQAHEF---IGCLEN-GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
N +A +++ LEN G ++ LS GQ +R+ +ARA+ + S ++++DE
Sbjct: 114 MNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDE 173
Query: 453 MGSALDIENEQKI 465
+A+D + E+++
Sbjct: 174 PFAAIDFKTEREM 186
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 49.7 bits (117), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 310 NFTVQPGETIALVGDSGAGKTSIF------SLILR---FYDPCSGSVEIEGIDLRLLSLE 360
N V+ GE + L+G SGAGK+++ + ++R D G V D +L
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
Query: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
+ Q ++ +V N+ +G +++ + +A+ E + T
Sbjct: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL------TKW 162
Query: 421 GDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQRR-GRT 477
D ++ LS G QR+ ARA +PILL+DE S+LD ++ ++L QR+ +T
Sbjct: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
Query: 478 TIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512
+F SH ++ A + + + ++ I++ G +E++
Sbjct: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
+ R ++ N++F + PG + ++G +GAGKT++F ++ P SG++ + G + L ++
Sbjct: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVD 386
Query: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENGYDT 418
+ R + +V+++I+ G EI N+ A F G
Sbjct: 387 QSR--------DSLEAEKTVWEDISGGDDIVKLNGHEI-NSRAYCSAFNFKG-------- 429
Query: 419 ILGDGAVH---LSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
GD LS GQ R+ +A+ + ++LLDE + LD E
Sbjct: 430 --GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
Score = 31.6 bits (70), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
+ +L ++N + P I ++G +GAGK++I ++ +G +
Sbjct: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-----------AT 67
Query: 363 RRFIAWVPQHPIM-IAASVYDNIAIGCPH 390
+ ++PQ P + ++ +V +NI G H
Sbjct: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 43.1 bits (100), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 14/201 (6%)
Query: 316 GETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVP---QH 372
GE + ++G SG GK+ + IL SG V++ G L L ++ F A + QH
Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98
Query: 373 PIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQ--AHEFIGCLENGYDTILGDGAVHLST 429
+ ++ +V +NI++ ++ + A L + H I + +T LS
Sbjct: 99 GALFSSMTVQENISM----PIKEHLNLPADLIEHIVHTKIAIVGLPPETA-NLMPFQLSG 153
Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR--GRTTIFASHRLSA 487
G I+R+++ARA+ D +L LDE S LD ++ K+L + R G + +H L+
Sbjct: 154 GMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNN 213
Query: 488 -IQDADMVFVLHDQVIVEKGV 507
I + V V+ + I+++G
Sbjct: 214 LISTCNRVAVIQKKGIMKEGT 234
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 41.6 bits (96), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
R ++K+ + + GE I +VG +GAGKT++ L+ P G + + G +L++ ++++
Sbjct: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQK 355
Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA--------MLAQAHEFIGCLEN 414
R I + S D++ + R E ++ A QAH +
Sbjct: 356 REDIDPDKSLASYLTGSSGDSLMV------RGESRHVAGYIKDFLFHPDQAHSLMK---- 405
Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
HLS G+ R +AR + + L++DE + LD E
Sbjct: 406 -----------HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
Score = 40.4 bits (93), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIR 363
+L++V +++P E I LVG +G+GK+++ + +P SG+V + RL LE+
Sbjct: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-RLGYLEQNP 77
Query: 364 RFIAWVPQHPIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421
H I+ + D I I P++ ++ + Q
Sbjct: 78 DL-----SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ----------------- 115
Query: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFA 481
D +LS GQ + +A+ + ++ IL+LDE + LD RT +
Sbjct: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF----------------RTIHWM 159
Query: 482 SHRLSAIQDADMVFVLHDQVIVE 504
L I A ++FV HD+ +E
Sbjct: 160 EQELLKINSA-LIFVSHDRRFLE 181
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 41.2 bits (95), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 15/216 (6%)
Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLI--LRFYDPCSGSVEIEG---IDLRLLS 358
I++ +N V+P E +A++G +G+GK+++ L+ + Y+ +G + +G +D ++
Sbjct: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
Query: 359 LEEIRRFIAWVPQHPIMIAASV---YDNIAIGCPHATR--KEIQNAAMLAQAHEFIGCLE 413
F+A+ Q+P+ I + + IA+ R KE+ + + L
Sbjct: 77 RASKGIFLAF--QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ---KIWKVLR 470
D + + S G+ + I + L + + +LDE S LDI+ + + LR
Sbjct: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
Query: 471 EQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
Q R I RL D + VLH+ I++ G
Sbjct: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 34.3 bits (77), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 420 LGDGAVHLSTGQIQRIAIARAILKD---SPILLLDEMGSALDIENEQKIWKVLRE-QRRG 475
+G A LS G+ QR+ +A+ + K + + +LDE + L + K+ +L RG
Sbjct: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
Query: 476 RTTIFASHRLSAIQDADMVF 495
+ I H L I+ AD +
Sbjct: 899 NSIIVIEHNLEVIKTADWIL 918
Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 249 GGISQAIASLRRLR-ELIVCKLDISSPISSRTF-PSPVLGSVSFRSVSFVYPGKSKRSIL 306
G SQ IA L + + K+ I P R + P+ ++ ++ RS + L
Sbjct: 592 GSPSQIIAHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNN-----------L 640
Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS----GSVEIEGIDLRLLSLEEI 362
KNV ++ G A+ G SG GK++ LI Y + GS GI R+ LE I
Sbjct: 641 KNVTGSIPLGLFTAITGISGGGKSTF--LISTLYKAAARIIMGSKYNPGIYDRIDGLEYI 698
Query: 363 RRFIAWVPQHPI 374
+ ++ + Q PI
Sbjct: 699 DKVVS-INQSPI 709
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 26.9 bits (58), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 253 QAIASLRRLRELIVCKLDISSPISSRTFPS-PVLGSVSFRS---VSFVYPGKSKRSILKN 308
Q I L +R I LD S + F S VL + F S + GK
Sbjct: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-------- 211
Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILR 338
+ ++ G I ++G S AGK+S+F+ + +
Sbjct: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAK 241
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 445 SPILLLDEMGSALDIENEQKIWKVLRE 471
+PILLLDE+ + LD + +++++ +
Sbjct: 314 APILLLDEISAHLDEDKRNALFRIVTD 340
>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 492
Score = 25.0 bits (53), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 448 LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501
+L E A+ N++K K +E R R + + L DM+ HD +
Sbjct: 199 VLAKEWSRAITFLNQKK--KNAKEWNRNRAILLIARSLENADKGDMIASYHDAI 250
>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 24.3 bits (51), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 316 GETIALVGDSGAGKTSIFSLILRF 339
G+ + L GD G+GK+ + I+RF
Sbjct: 33 GDCLTLSGDLGSGKSFLARSIIRF 56
>gi|254780218|ref|YP_003064631.1| thymidylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 225
Score = 23.9 bits (50), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 319 IALVGDSGAGKTSIFSLILRF 339
I+ G GAGKT+ SL+ RF
Sbjct: 7 ISFEGIEGAGKTTHISLLKRF 27
>gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 299
Score = 23.5 bits (49), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 249 GGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKR 303
GI+Q I L +C+L I FP +LG+V SF+ S R
Sbjct: 173 AGIAQFIGQL-------ICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDR 220
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.328 0.141 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,318
Number of Sequences: 1233
Number of extensions: 12402
Number of successful extensions: 120
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 39
length of query: 528
length of database: 328,796
effective HSP length: 78
effective length of query: 450
effective length of database: 232,622
effective search space: 104679900
effective search space used: 104679900
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 40 (20.0 bits)