Query gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 74
No_of_seqs 107 out of 844
Neff 5.1
Searched_HMMs 33803
Date Mon May 23 09:45:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780194.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3f1f_4 50S ribosomal protein 99.9 1.2E-27 3.5E-32 184.7 0.6 69 1-74 27-95 (97)
2 >2j01_4 50S ribosomal protein 99.9 7.5E-29 2.2E-33 191.8 -7.0 69 1-74 1-69 (71)
3 >1nkw_Y 50S ribosomal protein 99.9 2.1E-23 6.2E-28 159.6 6.9 56 1-61 1-56 (56)
4 >3bbo_1 Ribosomal protein L31; 99.9 1.7E-25 5E-30 172.0 -9.4 68 1-73 49-118 (144)
5 >1vs6_Z 50S ribosomal protein 99.5 1.7E-16 4.9E-21 118.8 -3.8 41 33-74 2-42 (42)
6 >1vs6_Z 50S ribosomal protein 98.8 4.9E-10 1.5E-14 80.5 -1.4 28 1-28 1-28 (28)
7 >3f1f_4 50S ribosomal protein 96.8 0.00022 6.5E-09 47.1 0.1 27 1-27 1-28 (97)
8 >1pp9_D Cytochrome C-1, cytoch 35.8 7.1 0.00021 20.5 -0.5 12 35-46 32-43 (142)
9 >2f7s_A C25KG, RAS-related pro 28.6 48 0.0014 15.5 4.2 42 24-66 2-47 (55)
10 >3cx5_D Cytochrome C1, heme pr 28.1 11 0.00034 19.3 -0.5 12 35-46 35-46 (146)
11 >2ywe_A GTP-binding protein LE 26.9 22 0.00066 17.5 0.8 54 1-58 37-90 (117)
12 >3cb4_D GTP-binding protein LE 25.6 18 0.00054 18.0 0.2 66 1-70 37-102 (121)
13 >2ket_A Cathelicidin-6; antimi 21.1 34 0.001 16.5 0.8 13 59-71 1-13 (27)
No 1
>>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4 (4:)
Probab=99.93 E-value=1.2e-27 Score=184.71 Aligned_cols=69 Identities=25% Similarity=0.410 Sum_probs=64.3
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE 74 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k 74 (74)
||++|||+|+++++.|+||++|++.||. |++.|||||+||| ||||+|+++|++|||||||+||+.+..+
T Consensus 27 MKk~IHP~y~~~~v~c~cg~~~~~~sT~----~~i~vdVcs~cHP-FyTG~q~~~dt~GRVekF~krf~~~~~~ 95 (97)
T 3f1f_4 27 VKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK 95 (97)
T ss_dssp ---------CCCEEEETTEEEEECCCSS----CCEEESSCTTC-------------------------------
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 5667898878899997899999973525----6589887689877-4818787871567399999987232324
No 2
>>2j01_4 50S ribosomal protein L31; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (4:)
Probab=99.93 E-value=7.5e-29 Score=191.82 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=64.9
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE 74 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k 74 (74)
||+||||+|++++|.|+||++|+++||. |+|.|||||+||| ||||+|+++|++|||||||+||+.+..+
T Consensus 1 MKk~IHP~y~~v~~~ct~g~~f~~~ST~----~~i~vdv~s~~HP-fyTG~q~~~~~~GRv~kF~krf~~~~~~ 69 (71)
T 2j01_4 1 MKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK 69 (71)
T ss_dssp CCGGGCCCCTTTTTCTTSCGGGSCSSSS----CCSSCCSCCCCCS-SSCCCSCC--------------------
T ss_pred CCCCCCCCCEEEEEEECCCCEEEECCCC----CEEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 9887799878899998999889953026----1299987689877-4828788882467599999877253425
No 3
>>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (Y:1-56)
Probab=99.89 E-value=2.1e-23 Score=159.61 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=53.8
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHH
Q ss_conf 9887889840799998799979988765476886999854877897116817897213648
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQV 61 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~Grv 61 (74)
|||+|||+|+++.|.|+||++|.++||. ++++|||||+||| ||||+|+++|++|||
T Consensus 1 MKk~IHP~y~~v~v~c~cg~~~~~~ST~----~~~~vdvcs~cHP-FyTG~q~~vdt~GRV 56 (56)
T 1nkw_Y 1 MQKDLHPKAVPCKIIYQGQVVMETMSTR----PEIHVDVWSGVHP-FWTGEERFLDTEGRV 56 (56)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEECCCC----CCEEEEECCCCCC-CEECCEEEEECCCCH
T ss_conf 9887799988899998999899966345----4589988689877-282888887247549
No 4
>>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (1:)
Probab=99.86 E-value=1.7e-25 Score=171.97 Aligned_cols=68 Identities=32% Similarity=0.334 Sum_probs=60.8
Q ss_pred CCCCCCCCCEEEEEE-ECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEEC-CCHHHHHHHHHHCCCC
Q ss_conf 988788984079999-879997998876547688699985487789711681789721-3648999977602678
Q gi|254780194|r 1 MKKNIHPETHLITVV-MTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDR-GGQVSRFKKRFAGLSI 73 (74)
Q Consensus 1 MKk~IHP~y~~v~v~-~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt-~GrveKF~kkfg~~~~ 73 (74)
||++|||+|++++++ |+||++|.++||. |+|+|||||.||| ||||+|+.+++ +||||||++|||++..
T Consensus 49 mKk~IHP~y~~~~~v~~s~g~~f~~~ST~----~~i~idv~s~~HP-fytG~~~~~~~~aGRv~kF~kRf~~~~~ 118 (144)
T 3bbo_1 49 RKKELHPEFHEDAKVYCNGELVMTTGGTK----KEYVVDVWSGNHP-FYLGNRSALMVDADQVEKFRKRFAGLSE 118 (144)
T ss_dssp -CTTTCCCCCHHHHHCSSSCTTTSCSSCS----CSSSCCSSCCCCC-SSSSSSSCCCCCCCCCCCSSCCCCCCSS
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEECC----CCEEEEECCCCCC-EEECCEEEEECCCCHHHHHHHHHCCCCH
T ss_conf 45777989825539987999789972457----7368877389875-0767704885355339999988615001
No 5
>>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} (Z:29-70)
Probab=99.52 E-value=1.7e-16 Score=118.82 Aligned_cols=41 Identities=32% Similarity=0.502 Sum_probs=38.4
Q ss_pred CEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 869998548778971168178972136489999776026789
Q gi|254780194|r 33 AVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE 74 (74)
Q Consensus 33 ~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k 74 (74)
.+|.|||||+||| ||||+|+++|++||||||++||+.++.|
T Consensus 2 ~~~~vdv~s~~HP-fyTG~q~~~d~~GrV~kF~kky~~~~~k 42 (42)
T 1vs6_Z 2 HDLNLDVCSKCHP-FFTGKQRDVATGGRVDRFNKRFNIPGSK 42 (42)
T ss_dssp CCCCCBCCSSSCC-BCCCCCTTTTTHHHHSCSSTTTTTTSCC
T ss_pred CCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 7289987799887-4918787871467599998766553579
No 6
>>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} (Z:1-28)
Probab=98.77 E-value=4.9e-10 Score=80.54 Aligned_cols=28 Identities=43% Similarity=0.519 Sum_probs=27.1
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 9887889840799998799979988765
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTW 28 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~ 28 (74)
||+||||+|+++.|.|+||++|+|+||+
T Consensus 1 MK~~IHP~Y~~~~v~CsCGn~f~TrST~ 28 (28)
T 1vs6_Z 1 MKKDIHPKYEEITASCSCGNVMKIRSTV 28 (28)
T ss_dssp CCCTTSCCCCCCBCCCCSSCCCCCBCCC
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEE
T ss_conf 9798799998799997899999981695
No 7
>>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4 (4:)
Probab=96.82 E-value=0.00022 Score=47.14 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCCCCCCCCEEEEEEE-CCCCEEEEEEE
Q ss_conf 9887889840799998-79997998876
Q gi|254780194|r 1 MKKNIHPETHLITVVM-TDGTQYQTRST 27 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~-t~g~~~~t~sT 27 (74)
||+||||+|++|++.. +++..|.+...
T Consensus 1 mk~~ihP~y~~v~f~d~~~~~~~~~~MK 28 (97)
T 3f1f_4 1 MPLGVHPLYTKRWLAHGQDRAKKEANVK 28 (97)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 9877686131556523754442345656
No 8
>>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (D:1-40,D:95-196)
Probab=35.84 E-value=7.1 Score=20.46 Aligned_cols=12 Identities=0% Similarity=-0.266 Sum_probs=9.2
Q ss_pred EEEEECCCCCCC
Q ss_conf 999854877897
Q gi|254780194|r 35 MKLDIDPLSHFA 46 (74)
Q Consensus 35 ~~vdi~s~~HP~ 46 (74)
+.-+|||.|||.
T Consensus 32 vy~evc~~chs~ 43 (142)
T 1pp9_D 32 VYKQVCSSCYPN 43 (142)
T ss_dssp HHHHTGGGTSSS
T ss_pred HHHHHCHHCCCC
T ss_conf 999965312888
No 9
>>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} (A:53-107)
Probab=28.63 E-value=48 Score=15.55 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=25.9
Q ss_pred EEEEECCCCCEEEEEECCCCCCCEECC----CEEEEECCCHHHHHHH
Q ss_conf 887654768869998548778971168----1789721364899997
Q gi|254780194|r 24 TRSTWKEEGAVMKLDIDPLSHFAWIGG----RQKITDRGGQVSRFKK 66 (74)
Q Consensus 24 t~sT~g~~~~~~~vdi~s~~HP~fytg----kq~~~dt~GrveKF~k 66 (74)
-++|+|-+.-.-.|+|....++..... +-.+=|++|+ |||+.
T Consensus 2 ~~~TIG~df~~k~v~~~~~~~~~~~~~~~~vklqiWDTAGQ-Erfrs 47 (55)
T 2f7s_A 2 FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-ERFRS 47 (55)
T ss_dssp EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-HHHHH
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC-HHHHH
T ss_conf 47855527899999961433211235540588535547864-56789
No 10
>>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} (D:1-43,D:98-200)
Probab=28.09 E-value=11 Score=19.26 Aligned_cols=12 Identities=0% Similarity=-0.197 Sum_probs=9.1
Q ss_pred EEEEECCCCCCC
Q ss_conf 999854877897
Q gi|254780194|r 35 MKLDIDPLSHFA 46 (74)
Q Consensus 35 ~~vdi~s~~HP~ 46 (74)
+.-+|||.|||.
T Consensus 35 vy~~vc~~chs~ 46 (146)
T 3cx5_D 35 VYREVCAACYPN 46 (146)
T ss_dssp HHHHTGGGTCSS
T ss_pred HHHHHCHHCCCC
T ss_conf 999976423983
No 11
>>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A* (A:484-600)
Probab=26.95 E-value=22 Score=17.54 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=41.2
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECC
Q ss_conf 9887889840799998799979988765476886999854877897116817897213
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRG 58 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~ 58 (74)
||+-|-+..++|.+..+-|+...-+.|+.- ++=||..+||.-=.+-+++++...
T Consensus 37 LK~~IPrq~f~v~IQA~ig~kiIARetIk~----~RKdVtak~ygGDisRK~KLL~kQ 90 (117)
T 2ywe_A 37 LRETIPRQLFEVHIQVAKGGKVIASERIKP----LRANVTAKCYGGDVTRKKKLLENQ 90 (117)
T ss_dssp HHHHSCCCSSCEEEEEEETTEEEEEEEECC----CC----------------------
T ss_pred HHHCCCCCCCCHHHEEEECCEEEECCCCCH----HHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 761188500100241132588999775716----751430322188751889999988
No 12
>>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* (D:479-599)
Probab=25.58 E-value=18 Score=18.05 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=45.3
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHC
Q ss_conf 9887889840799998799979988765476886999854877897116817897213648999977602
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAG 70 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~ 70 (74)
||+-|-+..++|.+...-|+...-+.|++. ++-||...||.-=.|-+++++.....=-|=.+.+|.
T Consensus 37 LKe~IPrq~fev~IQA~ig~kiiARe~Ik~----~RKdV~ak~ygGDisRK~KLL~kQK~GKKrmk~~G~ 102 (121)
T 3cb4_D 37 MKDLIPRQQFDIAIQAAIGTHIIARSTVKQ----LRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGN 102 (121)
T ss_dssp HHHHSCSCSSCEEEEEEETTEEEEEEEECC----CCTTCCCCCCC-------------------------
T ss_pred HHHCCCCCCCCCHHHHHHCCEEEEEECCHH----HHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 253187443047220210687999003504----406510031088871788999987642677860689
No 13
>>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus} (A:)
Probab=21.06 E-value=34 Score=16.45 Aligned_cols=13 Identities=46% Similarity=0.976 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHCC
Q ss_conf 6489999776026
Q gi|254780194|r 59 GQVSRFKKRFAGL 71 (74)
Q Consensus 59 GrveKF~kkfg~~ 71 (74)
||..+|++||..+
T Consensus 1 grfkrfrkkfkkl 13 (27)
T 2ket_A 1 GRFKRFRKKFKKL 13 (27)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9378999999999
Done!