Query gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 74
No_of_seqs 107 out of 844
Neff 5.1
Searched_HMMs 13730
Date Mon May 23 13:46:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780194.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vs6z1 d.325.1.2 (Z:1-70) Rib 99.9 6.5E-30 4.7E-34 195.8 -5.0 70 1-74 1-70 (70)
2 d2j0141 d.325.1.2 (4:1-50) Rib 99.7 1.5E-20 1.1E-24 140.3 -7.2 50 1-55 1-50 (50)
3 d2ob5a1 c.133.1.1 (A:1-147) Hy 18.4 16 0.0011 16.1 0.6 11 1-11 1-11 (147)
4 d1x6ha1 g.37.1.1 (A:44-80) Tra 14.0 22 0.0016 15.3 0.5 17 12-28 3-20 (37)
5 d2clyb1 f.53.1.1 (B:4-123) ATP 12.3 43 0.0031 13.5 1.5 20 53-72 55-74 (120)
6 d3bzka2 a.60.2.6 (A:564-636) T 11.6 13 0.00097 16.5 -1.2 11 3-13 7-17 (73)
7 d2csba4 a.60.2.4 (A:465-519) T 10.7 38 0.0027 13.9 0.8 14 59-72 15-28 (55)
8 d2fiya1 e.59.1.1 (A:19-308) Fd 10.6 52 0.0038 13.0 1.7 12 34-45 232-243 (290)
9 d1iufa2 a.4.1.7 (A:76-141) Ars 9.8 46 0.0034 13.3 1.0 17 53-69 48-64 (66)
10 d1a9xa1 a.92.1.1 (A:403-555) C 9.6 20 0.0015 15.5 -0.9 20 2-24 117-136 (153)
No 1
>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=6.5e-30 Score=195.78 Aligned_cols=70 Identities=36% Similarity=0.529 Sum_probs=66.7
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE 74 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k 74 (74)
||+||||+|++|++.|+||++|.++||++.+ +.|||||+||| ||||+|+++|++|||||||+|||.+++|
T Consensus 1 MKk~IHP~y~~v~~~~s~g~~f~~~sT~~~e---~~vdi~s~~HP-fyTG~q~~~dt~GRVekF~krf~~~~~K 70 (70)
T d1vs6z1 1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD---LNLDVCSKCHP-FFTGKQRDVATGGRVDRFNKRFNIPGSK 70 (70)
T ss_dssp CCCTTSCCCCCCBCCCCSSCCCCCBCCCCCC---CCCBCCSSSCC-BCCCCCTTTTTHHHHSCSSTTTTTTSCC
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCC---EEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 9798799998699997899999973684773---88875788887-5929787861467499998766553579
No 2
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=99.70 E-value=1.5e-20 Score=140.34 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=46.4
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEE
Q ss_conf 9887889840799998799979988765476886999854877897116817897
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKIT 55 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~ 55 (74)
|||||||+|++++|.|+||++|.++||. ++++|||||+||| ||||+|+++
T Consensus 1 MKk~IHP~y~~v~~~cscg~~f~~~ST~----~~~~vdIcs~cHP-FyTG~qk~v 50 (50)
T d2j0141 1 MKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFV 50 (50)
T ss_dssp CCGGGCCCCTTTTTCTTSCGGGSCSSSS----CCSSCCSCCCCCS-SSCCCSCC-
T ss_pred CCCCCCCCCEEEEEEECCCCEEEECCCC----CCEEEEECCCCCC-CCCCEEEEC
T ss_conf 9887799888899998999999943058----7688888999978-697809839
No 3
>d2ob5a1 c.133.1.1 (A:1-147) Hypothetical protein Atu2016 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=18.39 E-value=16 Score=16.10 Aligned_cols=11 Identities=45% Similarity=0.604 Sum_probs=9.3
Q ss_pred CCCCCCCCCEE
Q ss_conf 98878898407
Q gi|254780194|r 1 MKKNIHPETHL 11 (74)
Q Consensus 1 MKk~IHP~y~~ 11 (74)
|.|||||-.++
T Consensus 1 MLK~i~~iLnp 11 (147)
T d2ob5a1 1 MLKNIDPALNA 11 (147)
T ss_dssp CCTTSCTTSCH
T ss_pred CCCCCCCCCCH
T ss_conf 98888877499
No 4
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.03 E-value=22 Score=15.25 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=11.3
Q ss_pred EEEEEC-CCCEEEEEEEE
Q ss_conf 999987-99979988765
Q gi|254780194|r 12 ITVVMT-DGTQYQTRSTW 28 (74)
Q Consensus 12 v~v~~t-~g~~~~t~sT~ 28 (74)
..|+|+ ||.+|.-+-|.
T Consensus 3 ~afvcskcgktftrrntm 20 (37)
T d1x6ha1 3 AAFVCSKCGKTFTRRNTM 20 (37)
T ss_dssp CCEECSSSCCEESCHHHH
T ss_pred CEEEECCCCCCHHCCHHH
T ss_conf 223330034411000378
No 5
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.28 E-value=43 Score=13.52 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=15.9
Q ss_pred EEEECCCHHHHHHHHHHCCC
Q ss_conf 89721364899997760267
Q gi|254780194|r 53 KITDRGGQVSRFKKRFAGLS 72 (74)
Q Consensus 53 ~~~dt~GrveKF~kkfg~~~ 72 (74)
..+...|-|+.|.+.|..|.
T Consensus 55 ~~v~~~~~VD~fek~y~alk 74 (120)
T d2clyb1 55 ANVAKAGLVDDFEKKFNALK 74 (120)
T ss_dssp HTCSSTTHHHHHHHHHTTCC
T ss_pred HHCCCHHHHHHHHHHHHCCC
T ss_conf 75663779999999983426
No 6
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.62 E-value=13 Score=16.53 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=7.8
Q ss_pred CCCCCCCEEEE
Q ss_conf 87889840799
Q gi|254780194|r 3 KNIHPETHLIT 13 (74)
Q Consensus 3 k~IHP~y~~v~ 13 (74)
..||||.|+++
T Consensus 7 T~IHPESY~~a 17 (73)
T d3bzka2 7 SAVHPETYPLV 17 (73)
T ss_dssp SSCCGGGHHHH
T ss_pred CCCCCCCHHHH
T ss_conf 89898766999
No 7
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=10.72 E-value=38 Score=13.87 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 64899997760267
Q gi|254780194|r 59 GQVSRFKKRFAGLS 72 (74)
Q Consensus 59 GrveKF~kkfg~~~ 72 (74)
-|+|+.-+||||.+
T Consensus 15 eraerllkkyggys 28 (55)
T d2csba4 15 ERAERLLKKYGGYS 28 (55)
T ss_dssp HHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHCCHH
T ss_conf 99999999946826
No 8
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.56 E-value=52 Score=13.02 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=11.0
Q ss_pred EEEEEECCCCCC
Q ss_conf 699985487789
Q gi|254780194|r 34 VMKLDIDPLSHF 45 (74)
Q Consensus 34 ~~~vdi~s~~HP 45 (74)
-+++|+|..||-
T Consensus 232 ~~r~e~C~~C~~ 243 (290)
T d2fiya1 232 VLRAETCPSCQG 243 (290)
T ss_dssp SEEEEEETTTTE
T ss_pred CEEEEECCCCCC
T ss_conf 567777677688
No 9
>d1iufa2 a.4.1.7 (A:76-141) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=9.76 E-value=46 Score=13.34 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=13.5
Q ss_pred EEEECCCHHHHHHHHHH
Q ss_conf 89721364899997760
Q gi|254780194|r 53 KITDRGGQVSRFKKRFA 69 (74)
Q Consensus 53 ~~~dt~GrveKF~kkfg 69 (74)
.+.-+.|=.++|++||.
T Consensus 48 ~f~aS~GWL~rFK~Rh~ 64 (66)
T d1iufa2 48 VPNFSNGWLEGFRKRHI 64 (66)
T ss_dssp CCSCCSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 88887699999999844
No 10
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=9.64 E-value=20 Score=15.48 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=14.1
Q ss_pred CCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 88788984079999879997998
Q gi|254780194|r 2 KKNIHPETHLITVVMTDGTQYQT 24 (74)
Q Consensus 2 Kk~IHP~y~~v~v~~t~g~~~~t 24 (74)
+.||+|.|+. +.||..+|..
T Consensus 117 ~~~i~p~yK~---VDTcAaEF~a 136 (153)
T d1a9xa1 117 QYDLHPVYKR---VDTCAAEFAT 136 (153)
T ss_dssp HTTCCCEEEE---CCSBTTSSCC
T ss_pred HCCCCCEEEE---CCCCCCCCCC
T ss_conf 7268884652---2886605578
Done!