BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31 [Candidatus Liberibacter asiaticus str. psy62] (74 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31 [Candidatus Liberibacter asiaticus str. psy62] Length = 74 Score = 155 bits (392), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 74/74 (100%), Positives = 74/74 (100%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ Sbjct: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 Query: 61 VSRFKKRFAGLSIE 74 VSRFKKRFAGLSIE Sbjct: 61 VSRFKKRFAGLSIE 74 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 21.9 bits (45), Expect = 1.9, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 17/37 (45%) Query: 4 NIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDID 40 +I P H+ ++ T Y + W EG + + ID Sbjct: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.407 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,080 Number of Sequences: 1233 Number of extensions: 1528 Number of successful extensions: 2 Number of sequences better than 100.0: 2 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2 length of query: 74 length of database: 328,796 effective HSP length: 44 effective length of query: 30 effective length of database: 274,544 effective search space: 8236320 effective search space used: 8236320 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.3 bits) S2: 31 (16.5 bits)