HHsearch alignment for GI: 254780195 and conserved domain: CHL00188

Probab=99.48  E-value=3.4e-14  Score=122.97  Aligned_cols=191  Identities=21%  Similarity=0.251  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC--CCC--CCC--HHHHHHHHHHHCCCCCH
Q ss_conf             346888888888878736724167722565672344566216983997377--786--550--16888998874047632
Q gi|254780195|r  305 DAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG--FGK--RGS--EGKIAAIKFARENKIPF  378 (544)
Q Consensus       305 DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG--FG~--RGi--eGkI~Ai~yARen~iP~  378 (544)
T Consensus        12 GNi~Sv~~al~~~g~------~~~ii~-------~-~~~i~~~d~lILPGVGsf~~~m~~L~~~~l~~~i~~~~~~g~pi   77 (210)
T CHL00188         12 GNLHSVSRAIQQAGQ------QPCIIN-------S-ESELAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPF   77 (210)
T ss_pred             HHHHHHHHHHHHCCC------CEEEEC-------C-HHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf             789999999998699------879979-------9-99996489689888673899999886305169999999769986


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCE-EEECCEEEEECCCCHHHH
Q ss_conf             2355769999999987516889997000356666412115011234653001565546740-231652578558706688
Q gi|254780195|r  379 LGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGAT-MRLGAYDVSLKEETLISR  457 (544)
Q Consensus       379 LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGT-MRLG~~~~~l~~~S~~~~  457 (544)
T Consensus        78 LGICLGmQlLf-----------~-~seEg~~---~GLgli~G~v~k~~~~~~~kvPh~GWn~i~~~~~~~~~~~~~~~~~  142 (210)
T CHL00188         78 IGICLGLHLLF-----------E-TSEEGKE---EGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKA  142 (210)
T ss_pred             EEEEHHEEEEE-----------H-HCCCCCC---CCCCEECCEEEECCCCCCCCCCCCCHHHEECCCCCCCCCCCCHHHC
T ss_conf             99842102210-----------2-2115676---7734566689993788664673205423244576433444511215


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             637984766025233327889989997895999986-9998689998389984999724877327876988415899999
Q gi|254780195|r  458 IYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFS-VDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQA  536 (544)
Q Consensus       458 iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~-~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~A  536 (544)
T Consensus       143 ~~~~~~~--YFvHSY~~~~~------~~~~~~~~~~yg~~~~~a~v~k~N---i~G~QFHPE-KS~~-~Gl~lL~nFl~~  209 (210)
T CHL00188        143 WPLNPWA--YFVHSYGVMPK------SQACATTTTFYGKQQMVAAIEYDN---IFAMQFHPE-KSGE-FGLWLLREFMKK  209 (210)
T ss_pred             CCCCCCE--EEEEEEEECCC------CCCEEEEEEEECCEEEEEEEEECC---EEEEECCCC-CCCH-HHHHHHHHHHHC
T ss_conf             7767707--99741355279------843799999639989999997199---999948800-0768-799999999755


Q ss_pred             H
Q ss_conf             9
Q gi|254780195|r  537 T  537 (544)
Q Consensus       537 a  537 (544)
T Consensus       210 ~  210 (210)
T CHL00188        210 A  210 (210)
T ss_pred             C
T ss_conf             9