HHsearch alignment for GI: 254780195 and conserved domain: COG0505
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=99.30 E-value=3.6e-11 Score=101.11 Aligned_cols=173 Identities=25% Similarity=0.371 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH-CCCCEEEECCCCCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 888888888787367241677225656723445662-16983997377786-5501688899887404763223557699
Q gi|254780195|r 309 SLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHF-YGVHGILVPGGFGK-RGSEGKIAAIKFARENKIPFLGICFGMQ 386 (544)
Q Consensus 309 Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L-~~~dGIlVPGGFG~-RGieGkI~Ai~yARen~iP~LGIClGmQ 386 (544)
T Consensus 192 nIlr~L~----~rg~--~vtVVP~~t----~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQ 261 (368)
T COG0505 192 NILRELV----KRGC--RVTVVPADT----SAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQ 261 (368)
T ss_pred HHHHHHH----HCCC--EEEEECCCC----CHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHH
T ss_conf 7999999----7798--499976989----99999851899799748998806778999999998646898378868889
Q ss_pred HHHHHHHHHCCCCCCCCHHHCC--CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEE
Q ss_conf 9999998751688999700035--66664121150112346530015655467402316525785587066886379847
Q gi|254780195|r 387 MAVIEAARNLAGIPNACSTEFS--EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLI 464 (544)
Q Consensus 387 ~avIEfARnvlgl~dAnStEf~--~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I 464 (544)
T Consensus 262 llalA~Ga~T~Kmk------FGHrG~NhPV~dl~tg-------------------------rv~---------------I 295 (368)
T COG0505 262 LLALALGAKTYKMK------FGHRGANHPVKDLDTG-------------------------RVY---------------I 295 (368)
T ss_pred HHHHHCCCCEEECC------CCCCCCCCCCCCCCCC-------------------------EEE---------------E
T ss_conf 99986678643203------6887789676316588-------------------------089---------------9
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 6602523332788998999789599998699986899983899849997248773278769884158999999987644
Q gi|254780195|r 465 PERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQS 543 (544)
Q Consensus 465 ~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~~ 543 (544)
T Consensus 296 -TSQNHGyaVd~~---s~~~~~-~vth~nlnDgTvEGi~h~~~P~-fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~~ 368 (368)
T COG0505 296 -TSQNHGYAVDED---SLVETL-KVTHVNLNDGTVEGIRHKDLPA-FSVQYHPEASPGPHDTRYLFDEFIELMEAAKKE 368 (368)
T ss_pred -EECCCCEECCHH---HCCCCC-EEEEEECCCCCCCCEECCCCCE-EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf -946886013822---327776-0589817999700245279863-787148999989864477999999999875249