HHsearch alignment for GI: 254780195 and conserved domain: COG0505

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=99.30  E-value=3.6e-11  Score=101.11  Aligned_cols=173  Identities=25%  Similarity=0.371  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH-CCCCEEEECCCCCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             888888888787367241677225656723445662-16983997377786-5501688899887404763223557699
Q gi|254780195|r  309 SLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHF-YGVHGILVPGGFGK-RGSEGKIAAIKFARENKIPFLGICFGMQ  386 (544)
Q Consensus       309 Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L-~~~dGIlVPGGFG~-RGieGkI~Ai~yARen~iP~LGIClGmQ  386 (544)
T Consensus       192 nIlr~L~----~rg~--~vtVVP~~t----~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQ  261 (368)
T COG0505         192 NILRELV----KRGC--RVTVVPADT----SAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQ  261 (368)
T ss_pred             HHHHHHH----HCCC--EEEEECCCC----CHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHH
T ss_conf             7999999----7798--499976989----99999851899799748998806778999999998646898378868889


Q ss_pred             HHHHHHHHHCCCCCCCCHHHCC--CCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEE
Q ss_conf             9999998751688999700035--66664121150112346530015655467402316525785587066886379847
Q gi|254780195|r  387 MAVIEAARNLAGIPNACSTEFS--EAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLI  464 (544)
Q Consensus       387 ~avIEfARnvlgl~dAnStEf~--~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I  464 (544)
T Consensus       262 llalA~Ga~T~Kmk------FGHrG~NhPV~dl~tg-------------------------rv~---------------I  295 (368)
T COG0505         262 LLALALGAKTYKMK------FGHRGANHPVKDLDTG-------------------------RVY---------------I  295 (368)
T ss_pred             HHHHHCCCCEEECC------CCCCCCCCCCCCCCCC-------------------------EEE---------------E
T ss_conf             99986678643203------6887789676316588-------------------------089---------------9


Q ss_pred             EEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             6602523332788998999789599998699986899983899849997248773278769884158999999987644
Q gi|254780195|r  465 PERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQS  543 (544)
Q Consensus       465 ~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~~  543 (544)
T Consensus       296 -TSQNHGyaVd~~---s~~~~~-~vth~nlnDgTvEGi~h~~~P~-fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~~  368 (368)
T COG0505         296 -TSQNHGYAVDED---SLVETL-KVTHVNLNDGTVEGIRHKDLPA-FSVQYHPEASPGPHDTRYLFDEFIELMEAAKKE  368 (368)
T ss_pred             -EECCCCEECCHH---HCCCCC-EEEEEECCCCCCCCEECCCCCE-EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             -946886013822---327776-0589817999700245279863-787148999989864477999999999875249