HHsearch alignment for GI: 254780195 and conserved domain: KOG1559
>KOG1559 consensus.
Probab=97.72 E-value=0.00023 Score=52.08 Aligned_cols=171 Identities=23% Similarity=0.350 Sum_probs=88.3
Q ss_pred CCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH--C-----CCCCHHHHHHHHHHHHHHHH--HHCCCCCCCCHHHC
Q ss_conf 234456621698399737778655016888998874--0-----47632235576999999998--75168899970003
Q gi|254780195|r 337 KEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAR--E-----NKIPFLGICFGMQMAVIEAA--RNLAGIPNACSTEF 407 (544)
Q Consensus 337 ~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yAR--e-----n~iP~LGIClGmQ~avIEfA--Rnvlgl~dAnStEf 407 (544)
T Consensus 102 Ee~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~--vd- 178 (340)
T KOG1559 102 EEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDA--VD- 178 (340)
T ss_pred HHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCC--CC-
T ss_conf 899999998736057417432224099999999988876067866362124345389999998557068775032--02-
Q ss_pred CCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHH---HHHHH
Q ss_conf 566664121150112346530015655467402316525785587066886379847660252333278899---89997
Q gi|254780195|r 408 SEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYR---EKLEG 484 (544)
Q Consensus 408 ~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~---~~le~ 484 (544)
T Consensus 179 --------~AssLqF~~--------nvn~~~t~F------QrFPpELLkkL~~dcLvm--q~Hk~gisp~nF~~N~~Ls~ 234 (340)
T KOG1559 179 --------VASSLQFVG--------NVNIHGTMF------QRFPPELLKKLSTDCLVM--QNHKFGISPKNFQGNPALSS 234 (340)
T ss_pred --------CCCCEEEEC--------CCCEEEHHH------HHCCHHHHHHHCCCHHEE--ECCCCCCCHHHCCCCHHHHH
T ss_conf --------135302303--------554001157------548999998735231100--03323446230457988997
Q ss_pred CCCEEEEECCCC---CEEEEEEECCCCEEEEEECCCC-----CCCCCCCCC---HHHHHHHHHH
Q ss_conf 895999986999---8689998389984999724877-----327876988---4158999999
Q gi|254780195|r 485 CGLKFSGFSVDH---ALPEVVEYINHPWFIGVQYHPE-----LKSRPLDPH---PLFVSFIQAT 537 (544)
Q Consensus 485 ~Gl~~sg~~~d~---~lvEiiEl~~HpffvgvQfHPE-----f~Srp~~ph---PLF~~fi~Aa 537 (544)
T Consensus 235 -FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafEWgss~-IpHsedAiqvtqhaA~ 295 (340)
T KOG1559 235 -FFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFEWGSSD-IPHSEDAIQVTQHAAN 295 (340)
T ss_pred -HHHHEEEECCCCCEEEEEEECCEECC-CEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHH
T ss_conf -87653330179850798852030124-1004566755743235577-9987217899999999