HHsearch alignment for GI: 254780195 and conserved domain: KOG1559

>KOG1559 consensus.
Probab=97.72  E-value=0.00023  Score=52.08  Aligned_cols=171  Identities=23%  Similarity=0.350  Sum_probs=88.3

Q ss_pred             CCCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH--C-----CCCCHHHHHHHHHHHHHHHH--HHCCCCCCCCHHHC
Q ss_conf             234456621698399737778655016888998874--0-----47632235576999999998--75168899970003
Q gi|254780195|r  337 KEDPVKHFYGVHGILVPGGFGKRGSEGKIAAIKFAR--E-----NKIPFLGICFGMQMAVIEAA--RNLAGIPNACSTEF  407 (544)
Q Consensus       337 ~~~~~~~L~~~dGIlVPGGFG~RGieGkI~Ai~yAR--e-----n~iP~LGIClGmQ~avIEfA--Rnvlgl~dAnStEf  407 (544)
T Consensus       102 Ee~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~--vd-  178 (340)
T KOG1559         102 EEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDA--VD-  178 (340)
T ss_pred             HHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCC--CC-
T ss_conf             899999998736057417432224099999999988876067866362124345389999998557068775032--02-


Q ss_pred             CCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHH---HHHHH
Q ss_conf             566664121150112346530015655467402316525785587066886379847660252333278899---89997
Q gi|254780195|r  408 SEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYR---EKLEG  484 (544)
Q Consensus       408 ~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~---~~le~  484 (544)
T Consensus       179 --------~AssLqF~~--------nvn~~~t~F------QrFPpELLkkL~~dcLvm--q~Hk~gisp~nF~~N~~Ls~  234 (340)
T KOG1559         179 --------VASSLQFVG--------NVNIHGTMF------QRFPPELLKKLSTDCLVM--QNHKFGISPKNFQGNPALSS  234 (340)
T ss_pred             --------CCCCEEEEC--------CCCEEEHHH------HHCCHHHHHHHCCCHHEE--ECCCCCCCHHHCCCCHHHHH
T ss_conf             --------135302303--------554001157------548999998735231100--03323446230457988997


Q ss_pred             CCCEEEEECCCC---CEEEEEEECCCCEEEEEECCCC-----CCCCCCCCC---HHHHHHHHHH
Q ss_conf             895999986999---8689998389984999724877-----327876988---4158999999
Q gi|254780195|r  485 CGLKFSGFSVDH---ALPEVVEYINHPWFIGVQYHPE-----LKSRPLDPH---PLFVSFIQAT  537 (544)
Q Consensus       485 ~Gl~~sg~~~d~---~lvEiiEl~~HpffvgvQfHPE-----f~Srp~~ph---PLF~~fi~Aa  537 (544)
T Consensus       235 -FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafEWgss~-IpHsedAiqvtqhaA~  295 (340)
T KOG1559         235 -FFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFEWGSSD-IPHSEDAIQVTQHAAN  295 (340)
T ss_pred             -HHHHEEEECCCCCEEEEEEECCEECC-CEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHH
T ss_conf             -87653330179850798852030124-1004566755743235577-9987217899999999