HHsearch alignment for GI: 254780195 and conserved domain: TIGR00337

>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=100.00  E-value=0  Score=2131.87  Aligned_cols=534  Identities=55%  Similarity=0.947  Sum_probs=521.3

Q ss_pred             CCEEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
Q ss_conf             92399993750144444899999999999689828898544553348888886443507872798400255641133228
Q gi|254780195|r    1 MVKYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMG   80 (544)
Q Consensus         1 m~KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~   80 (544)
T Consensus         3 ~~KyifVTGGV~SslGKGI~AAS~grLL~~~gl~Vt~iKiDPYiN~DpGTMsP~qHGEVFVt~DG~EtDLDLGHYERFl~   82 (571)
T TIGR00337         3 MMKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLD   82 (571)
T ss_pred             CCEEEEEECCEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCCCHHHCC
T ss_conf             61179994438504026789999999998558806576307755668763778635427880688764366654212227


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCC--------CCCEEEEECCCCCCCCCCCHH
Q ss_conf             747754680125899999988857775774025646024898999970788--------987899972431222123068
Q gi|254780195|r   81 ISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE--------DADFVICEIGGTIGDIEVMPF  152 (544)
Q Consensus        81 ~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~--------~~Dv~ivEiGGTVGDIEs~pF  152 (544)
T Consensus        83 ~~l~~~~NiTTGkIY~~Vi~kERkGdYLG~TVQiIPHiTnEIK~~I~~~A~~P~eDtG~~~Dv~IvEiGGTVGDIEs~PF  162 (571)
T TIGR00337        83 TNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAKKPVEDTGSGADVVIVEIGGTVGDIESLPF  162 (571)
T ss_pred             CCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHH
T ss_conf             66774566100668998841037712148827984255467899999960377645679974799983770000036258


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf             99999999874977685799997467542256620034789999999974998768999238758999999998641988
Q gi|254780195|r  153 VEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVP  232 (544)
Q Consensus       153 lEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~  232 (544)
T Consensus       163 LEAiRQ~~~e~G~--Env~~iHvTLVP~i~aagE~KTKPTQhSVKeLRs~Gi~PD~i~cRs~~~l~~~~k~KiAlFCdV~  240 (571)
T TIGR00337       163 LEAIRQLKKEVGR--ENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSLGIQPDIIICRSSEPLDKSLKKKIALFCDVE  240 (571)
T ss_pred             HHHHHHHHHHHCC--CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCC
T ss_conf             9999999987389--86799984002631448747877512789999860988868998188768977764521005889


Q ss_pred             HHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC---------CCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCC
Q ss_conf             677240389862026689887649488999983878888---------62047899999874184343799995200148
Q gi|254780195|r  233 MSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVS---------LPQIDNWQTFCDRTLSLKNEVKVAIVGKYIHL  303 (544)
Q Consensus       233 ~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~---------~~~l~~W~~~~~~~~~~~~~V~IaiVGKY~~l  303 (544)
T Consensus       241 ~~aVI~~~Da~sIY~vPl~L~~egl~~~~~~rl~L~~~~~~ee~k~rG~~~Ls~W~~~v~~~~~~~~~v~Ig~VGKY~eL  320 (571)
T TIGR00337       241 EEAVINAEDASSIYEVPLLLKKEGLDDYLCRRLNLNEKPLIEEEKERGEADLSEWEELVEKLINPKEEVTIGLVGKYVEL  320 (571)
T ss_pred             CCCEEEEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCH
T ss_conf             73257865552401135210004335799998437877742012213755489999999863055251679897400251


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH----HHHHCC------CCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf             1346888888888878736724167722565672344----566216------983997377786550168889988740
Q gi|254780195|r  304 KDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDP----VKHFYG------VHGILVPGGFGKRGSEGKIAAIKFARE  373 (544)
Q Consensus       304 ~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~----~~~L~~------~dGIlVPGGFG~RGieGkI~Ai~yARe  373 (544)
T Consensus       321 ~DaY~Sv~EAL~Hag~~~d~~v~i~Wi~s~d~e~~~~e~~k~~~l~~~~~~~~~DGILVPGGFG~RG~EGKI~Ai~yARE  400 (571)
T TIGR00337       321 KDAYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEEQEVDKAELLDGWNELSEVDGILVPGGFGERGVEGKIRAIKYARE  400 (571)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             35678899999876776374256898621013200120013555322445430680683688897660247899999876


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCC---CEECCCHHCC-CCCCCCCCCCCCCCCEEEECCEEEE
Q ss_conf             47632235576999999998751688999700035-66664---1211501123-4653001565546740231652578
Q gi|254780195|r  374 NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFS-EAGVP---VIALMSEWMK-GDQQEKRLPSDDLGATMRLGAYDVS  448 (544)
Q Consensus       374 n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~-~~~~p---vI~~l~e~~~-~~~~~~~~~~~~~GGTMRLG~~~~~  448 (544)
T Consensus       401 N~iPFLGICLGmQ~A~IEFARNV~Gl~~AnStEf~~~t~~p~~~Vv~LlpEq~d~~~~~~VRt~~~~lGGTMRLG~ypc~  480 (571)
T TIGR00337       401 NNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPKSPVVDLLPEQKDQNGNKEVRTEIEDLGGTMRLGLYPCI  480 (571)
T ss_pred             CCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCCCEECCEEECCCCCEEECCCCCEE
T ss_conf             36973302177788899997653479888741246455777331114253222446760013010138724305872217


Q ss_pred             ECCC---CHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf             5587---0668863798476602523332788998999789599998699986899983899849997248773278769
Q gi|254780195|r  449 LKEE---TLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLD  525 (544)
Q Consensus       449 l~~~---S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~  525 (544)
T Consensus       481 l~~~~eWt~a~klYg~~~v~ERHRHRYE~Nn~~~~~~E~~GL~vsG~S~dg~l~EiiE~~~HP~FvA~QFHPEF~Srp~~  560 (571)
T TIGR00337       481 LKPGSEWTLAFKLYGKEEVYERHRHRYEVNNEYREELENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNR  560 (571)
T ss_pred             ECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
T ss_conf             71787232675533786788712444122757898998579589998699838999984797868886226751167788


Q ss_pred             CCHHHHHHHHH
Q ss_conf             88415899999
Q gi|254780195|r  526 PHPLFVSFIQA  536 (544)
Q Consensus       526 phPLF~~fi~A  536 (544)
T Consensus       561 p~plF~Gfv~A  571 (571)
T TIGR00337       561 PHPLFLGFVKA  571 (571)
T ss_pred             CCCCCHHHHCC
T ss_conf             88750553249