HHsearch alignment for GI: 254780195 and conserved domain: cd01653

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.75  E-value=7e-05  Score=55.80  Aligned_cols=79  Identities=27%  Similarity=0.455  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCC----HHHHHHHHHHHCCCCCH
Q ss_conf             81346888888888878736724167722565672344566216983997377786550----16888998874047632
Q gi|254780195|r  303 LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGS----EGKIAAIKFARENKIPF  378 (544)
Q Consensus       303 l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGi----eGkI~Ai~yARen~iP~  378 (544)
T Consensus        10 ~~~~~~~~~~~l~~~~------~~~~~i~~~~~~~~~-~~~~~~~d~liipgg~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (115)
T cd01653          10 EELELASPLDALREAG------AEVDVVSPDGGPVES-DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPI   82 (115)
T ss_pred             CHHHHHHHHHHHHHCC------CEEEEEECCCCCCCC-CCCHHCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHCCCEE
T ss_conf             2899999999999779------979999658998666-576200899998998632999863999999999999869989


Q ss_pred             HHHHHHHHHH
Q ss_conf             2355769999
Q gi|254780195|r  379 LGICFGMQMA  388 (544)
Q Consensus       379 LGIClGmQ~a  388 (544)
T Consensus        83 ~~~c~g~~~l   92 (115)
T cd01653          83 LGICLGAQLL   92 (115)
T ss_pred             EEECHHHHHH
T ss_conf             9988588999