HHsearch alignment for GI: 254780195 and conserved domain: pfam00117

Probab=99.86  E-value=4.6e-21  Score=172.53  Aligned_cols=181  Identities=28%  Similarity=0.408  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC-CHHHHHHHHHHHCCCCCHHHH
Q ss_conf             8134688888888887873672416772256567234456621698399737778655-016888998874047632235
Q gi|254780195|r  303 LKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRG-SEGKIAAIKFARENKIPFLGI  381 (544)
Q Consensus       303 l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RG-ieGkI~Ai~yARen~iP~LGI  381 (544)
T Consensus         2 iiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~---~-~~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~~~~PiLGI   77 (187)
T pfam00117         2 LIDNGDSFTYNLARALRELGVEVEVVPNDTPAE---E-ILELLNPDGIIISPGPGSPGDAGGAIEAIKELRENKIPILGI   77 (187)
T ss_pred             EEECCCCHHHHHHHHHHHCCCEEEEEECCCCHH---H-HHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHHCCCCEEEE
T ss_conf             893786389999999986899799998999869---9-985259998999199861101345899999999779989999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHC-
Q ss_conf             5769999999987516889997000356666412115011234653001565546740231652578558706688637-
Q gi|254780195|r  382 CFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYDVSLKEETLISRIYG-  460 (544)
Q Consensus       382 ClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg-  460 (544)
T Consensus        78 ClG~Qll~~~~Gg~v~~~--------------------------------~~~~~G~~~~i~~-------~~~--~~~~~  116 (187)
T pfam00117        78 CLGHQLLALAFGGKVIKA--------------------------------KEPHHGKNSPVGH-------DKG--LFYGL  116 (187)
T ss_pred             EHHHHHHHHHCCCCCCCC--------------------------------CEEECCEEEEECC-------CHH--HHCCC
T ss_conf             888999999719986443--------------------------------1010570489732-------116--44279


Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             98476602523332788998999789599998699986899983899849997248773278769884158999
Q gi|254780195|r  461 LDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINHPWFIGVQYHPELKSRPLDPHPLFVSFI  534 (544)
Q Consensus       461 ~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~HpffvgvQfHPEf~Srp~~phPLF~~fi  534 (544)
T Consensus       117 ~~~~~~~~~Hs~~v~~~~----lp~~~~i~a~s~~~~~i~a~~~~~~~~~-gvQfHPE~~~t~~G~~-ll~nfl  184 (187)
T pfam00117       117 PNVFIVRRYHSYAVDPDT----LPDGLEVTAASDNGGEIMAIRHKENPIF-GVQFHPESSLTPGGPE-LLFNFL  184 (187)
T ss_pred             CCCCEEEEEEEEEEEECC----CCCCEEEEEECCCCCCEEEEEECCCCEE-EEEECCCCCCCCCCHH-HHHHHH
T ss_conf             977377760348998625----7886299998688871899998899899-9995997799977048-998777