Query gi|254780196|ref|YP_003064609.1| hypothetical protein CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs 126 out of 939
Neff 5.3
Searched_HMMs 23785
Date Mon May 23 12:41:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780196.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dl8_E Protein-export membrane 99.9 8.6E-28 3.6E-32 153.2 1.5 73 1-73 1-78 (107)
2 2akh_X Protein-export membrane 99.9 9.1E-26 3.8E-30 143.3 7.5 71 1-71 1-77 (77)
3 3din_E Preprotein translocase 99.9 1.9E-25 8E-30 141.7 1.7 70 1-70 1-76 (76)
4 2knc_B Integrin beta-3; transm 47.3 11 0.00046 15.5 3.1 19 4-22 11-29 (79)
5 3bz1_I Photosystem II reaction 28.5 23 0.00098 13.9 4.3 28 47-74 4-31 (38)
6 1fjk_A Cardiac phospholamban; 27.8 24 0.001 13.8 3.3 19 4-22 32-50 (52)
7 2k9j_B Integrin beta-3; transm 21.8 32 0.0013 13.2 3.3 19 4-22 10-28 (43)
8 1m56_D Cytochrome C oxidase; m 14.3 50 0.0021 12.2 4.2 25 44-68 26-50 (51)
9 1qle_D Cytochrome AA3, ccytoch 14.1 50 0.0021 12.2 4.0 25 44-68 18-42 (43)
10 1z65_A PRPLP, prion-like prote 13.7 47 0.002 12.4 0.9 14 50-63 7-20 (30)
No 1
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=99.93 E-value=8.6e-28 Score=153.17 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 93599899999999999999714776442-----22223333466566689999999999999999999997266777
Q gi|254780196|r 1 MQIFLMVVHLIVVVGLVCVILIQSSDSSA-----FGSSSNFTSVRSTAHSLGRFTAILAFFFFATSIALGMISRYTST 73 (125)
Q Consensus 1 M~~~llvi~vi~~~~Li~~VLlQ~~kg~g-----~G~~~~~~~~~g~~~~L~k~T~~la~~F~~~sl~l~~~s~~~~~ 73 (125)
||++++++|+|+|++||++||+|++||++ +|+++++|++||++|||+|+|||+|++||++|+.|+|++++++.
T Consensus 1 M~~~llii~vivsi~LI~~VLlQ~~Kg~~~~~~ggg~s~~~fg~r~~~~~L~K~T~~la~~F~v~sl~L~~~~~~~~s 78 (107)
T 3dl8_E 1 MYYALLTLFVIIAVVLIISTLLQKGRGDVGAAFGGGMGQSIFGVGGVETILTKATYWLGALFLVLALLLSVIPKEKGS 78 (107)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCCCCCSSCCCCCTTHHHHHHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 942899999999999999705026886602254566555566775342599999999999999999999999657886
No 2
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=99.92 E-value=9.1e-26 Score=143.26 Aligned_cols=71 Identities=35% Similarity=0.556 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 935998999999999999997147764422------22233334665666899999999999999999999972667
Q gi|254780196|r 1 MQIFLMVVHLIVVVGLVCVILIQSSDSSAF------GSSSNFTSVRSTAHSLGRFTAILAFFFFATSIALGMISRYT 71 (125)
Q Consensus 1 M~~~llvi~vi~~~~Li~~VLlQ~~kg~g~------G~~~~~~~~~g~~~~L~k~T~~la~~F~~~sl~l~~~s~~~ 71 (125)
||++++++|+++|++||.+||+|++||+|+ |+++++|++||++|||+|+|||+|++||++|+.|+|+++++
T Consensus 1 M~~~llii~viv~i~Li~~VLlQ~~Kg~glg~~~ggg~s~~~fg~~g~~~~L~k~T~ila~~F~i~sl~L~~l~~~~ 77 (77)
T 2akh_X 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFFIISLVLGNINSNK 77 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 93179999999999999981402698776423456776567757765020899999999999999999999987069
No 3
>3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga SP}
Probab=99.90 E-value=1.9e-25 Score=141.68 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 935998999999999999997147764422------2223333466566689999999999999999999997266
Q gi|254780196|r 1 MQIFLMVVHLIVVVGLVCVILIQSSDSSAF------GSSSNFTSVRSTAHSLGRFTAILAFFFFATSIALGMISRY 70 (125)
Q Consensus 1 M~~~llvi~vi~~~~Li~~VLlQ~~kg~g~------G~~~~~~~~~g~~~~L~k~T~~la~~F~~~sl~l~~~s~~ 70 (125)
||++++++|+++|++||++||+|++||+|+ |+++++|++||++|||+|+|||+|++||++|+.|+|++++
T Consensus 1 M~~~llii~viisi~LI~~VLlQ~~Kg~gl~~~~ggg~s~~~fg~~g~~~fL~K~T~~lA~~F~i~sl~L~~~~sk 76 (76)
T 3din_E 1 MKTFFLIVHTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLDTGGKITLVLSVLFFVSCVVTAFVLTR 76 (76)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTCCSSCCTTCCCCCCSSCSSCTTHHHHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9117999999999999999860468776532345677555765776502199999999999999999999998619
No 4
>2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=47.33 E-value=11 Score=15.45 Aligned_cols=19 Identities=5% Similarity=0.287 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999971
Q gi|254780196|r 4 FLMVVHLIVVVGLVCVILI 22 (125)
Q Consensus 4 ~llvi~vi~~~~Li~~VLl 22 (125)
+.+++-++.+++||++++|
T Consensus 11 ~~Ivlgvi~~IvliGl~~L 29 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAAL 29 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 3399999999999999999
No 5
>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3kzi_I* 3a0b_I* 3a0h_I*
Probab=28.49 E-value=23 Score=13.85 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999999972667776
Q gi|254780196|r 47 GRFTAILAFFFFATSIALGMISRYTSTR 74 (125)
Q Consensus 47 ~k~T~~la~~F~~~sl~l~~~s~~~~~~ 74 (125)
-|+.....++||+.-+..+++++..+..
T Consensus 4 LKi~Vy~vV~fFv~lFiFGFLSnDP~Rn 31 (38)
T 3bz1_I 4 LKITVYIVVTFFVLLFVFGFLSGDPARN 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTSS
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8864267899999999885305898899
No 6
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=27.80 E-value=24 Score=13.79 Aligned_cols=19 Identities=21% Similarity=0.737 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999971
Q gi|254780196|r 4 FLMVVHLIVVVGLVCVILI 22 (125)
Q Consensus 4 ~llvi~vi~~~~Li~~VLl 22 (125)
++-.-.+++|++||+.|.+
T Consensus 32 fvnf~lili~llliciivm 50 (52)
T 1fjk_A 32 FINFCLILIFLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 7
>2k9j_B Integrin beta-3; transmembrane complex, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues, disease mutation; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A
Probab=21.75 E-value=32 Score=13.18 Aligned_cols=19 Identities=5% Similarity=0.287 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999971
Q gi|254780196|r 4 FLMVVHLIVVVGLVCVILI 22 (125)
Q Consensus 4 ~llvi~vi~~~~Li~~VLl 22 (125)
..+++-++.+++||++++|
T Consensus 10 ~~ivlgvi~~ivliGl~~L 28 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAAL 28 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 8
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=14.27 E-value=50 Score=12.24 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899999999999999999999972
Q gi|254780196|r 44 HSLGRFTAILAFFFFATSIALGMIS 68 (125)
Q Consensus 44 ~~L~k~T~~la~~F~~~sl~l~~~s 68 (125)
+..-|+|.|.+++-++.-+.|++++
T Consensus 26 dgFik~~t~~~i~ii~iLiFlAi~n 50 (51)
T 1m56_D 26 AGFVRMVTWAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999999999999999999999962
No 9
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=14.13 E-value=50 Score=12.22 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899999999999999999999972
Q gi|254780196|r 44 HSLGRFTAILAFFFFATSIALGMIS 68 (125)
Q Consensus 44 ~~L~k~T~~la~~F~~~sl~l~~~s 68 (125)
+..-|+|.|.+++-++..+.|++++
T Consensus 18 ~gFik~~t~~~i~~i~~liFlAifn 42 (43)
T 1qle_D 18 AGFIKGATWVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999999999999999999999963
No 10
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=13.75 E-value=47 Score=12.37 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780196|r 50 TAILAFFFFATSIA 63 (125)
Q Consensus 50 T~~la~~F~~~sl~ 63 (125)
||+++++-+...--
T Consensus 7 tw~~~ilcmllash 20 (30)
T 1z65_A 7 TWWVAILCMLLASH 20 (30)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 08999999999999
Done!