RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780196|ref|YP_003064609.1| hypothetical protein
CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
           olivochromogenes [TaxId: 1963]}
          Length = 386

 Score = 25.7 bits (56), Expect = 1.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
           QG D FGD + P LD V  
Sbjct: 20  QGRDPFGDATRPALDPVET 38


>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
           [TaxId: 1050]}
          Length = 318

 Score = 25.5 bits (56), Expect = 1.4
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 4   FLMVVHLIVVVGLVCVILIQSSDSSAFG----SSSNFTSVRSTAHS---LGRFTAILAFF 56
           F   +   +V+G +  ++   S + A         ++T+  S  +       F  +   F
Sbjct: 149 FAAAIFFYLVLGFIRPVM-MGSWAKAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMLSIAF 207

Query: 57  FFATSIALGM 66
            + +++   M
Sbjct: 208 LYGSALLFAM 217


>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
           Thermophilus [TaxId: 271]}
          Length = 387

 Score = 25.4 bits (55), Expect = 1.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 89  DQGNDNFGDGSSPKLDSVSA 108
           + G D FGD    +LD V  
Sbjct: 19  NVGRDPFGDAVRERLDPVYV 38


>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
           b3728 [TaxId: 1663]}
          Length = 393

 Score = 25.3 bits (55), Expect = 1.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
            G D FG  +   LD V A
Sbjct: 19  TGADPFGVATRKNLDPVEA 37


>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 323

 Score = 25.1 bits (55), Expect = 2.0
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 4   FLMVVHLIVVVGLVCVILIQS-SDSSAFGSSSNFTSVRSTAHSLGRFT-----AILAFFF 57
           F   +  ++ +G +   L+ S S+   FG   +   + + +   G F           F 
Sbjct: 148 FAAAIFFVLCIGCIHPTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYYCPWHGFSIGFA 207

Query: 58  FATSIALGM 66
           +   +    
Sbjct: 208 YGCGLLFAA 216


>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
           missouriensis [TaxId: 1866]}
          Length = 392

 Score = 24.9 bits (54), Expect = 2.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 90  QGNDNFGDGSSPKLDSVSA 108
           Q  D FGD +   LD V A
Sbjct: 19  QARDAFGDATRTALDPVEA 37


>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
           protein PsbB {Thermosynechococcus elongatus [TaxId:
           146786]}
          Length = 488

 Score = 24.8 bits (54), Expect = 2.4
 Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 10/41 (24%)

Query: 22  IQSSDSSAFGSSS-NFTSVRS---TAHSLGRFTAILAFFFF 58
           I   D+    S     TS R     AH      A+ A  FF
Sbjct: 428 IFEFDTETLNSDGIFRTSPRGWFTFAH------AVFALLFF 462


>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 447

 Score = 23.6 bits (51), Expect = 5.1
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 10/41 (24%)

Query: 22  IQSSDSSAFGSSS-NFTSVR---STAHSLGRFTAILAFFFF 58
           + S    A   +S NF S R   +T+H       +LAFFF 
Sbjct: 378 LNSVGGVATEINSVNFVSPRSWLATSH------FVLAFFFL 412


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,086
Number of extensions: 12945
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 13
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.0 bits)