BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780196|ref|YP_003064609.1| hypothetical protein
CLIBASIA_00405 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780196|ref|YP_003064609.1| hypothetical protein CLIBASIA_00405 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score =  245 bits (626), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MQIFLMVVHLIVVVGLVCVILIQSSDSSAFGSSSNFTSVRSTAHSLGRFTAILAFFFFAT 60
           MQIFLMVVHLIVVVGLVCVILIQSSDSSAFGSSSNFTSVRSTAHSLGRFTAILAFFFFAT
Sbjct: 1   MQIFLMVVHLIVVVGLVCVILIQSSDSSAFGSSSNFTSVRSTAHSLGRFTAILAFFFFAT 60

Query: 61  SIALGMISRYTSTRYKDNMHRSLVDSIKDQGNDNFGDGSSPKLDSVSAKSSSSVVAGKRS 120
           SIALGMISRYTSTRYKDNMHRSLVDSIKDQGNDNFGDGSSPKLDSVSAKSSSSVVAGKRS
Sbjct: 61  SIALGMISRYTSTRYKDNMHRSLVDSIKDQGNDNFGDGSSPKLDSVSAKSSSSVVAGKRS 120

Query: 121 SSRTK 125
           SSRTK
Sbjct: 121 SSRTK 125


>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 586

 Score = 23.5 bits (49), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 65  GMISRYTSTRYKDNMHRSLVDSIKDQGNDNFGDGSSPKLDSVSAKSSSSVVAG 117
           G I+ Y S  Y   +  S+V S  + G +  G G+   ++ VSA  +  +  G
Sbjct: 87  GFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVG 139


>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 682

 Score = 23.5 bits (49), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 97  DGSSPKLDSVSAKSSSSVVAGKRSSS 122
           +GS   LD  S+ S+SSV   KR  S
Sbjct: 87  EGSEDSLDLASSASNSSVFLQKRKDS 112


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 22.7 bits (47), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 83  LVDSIKDQGNDNFGDGSSPKLDSVSAKSSSSVV 115
           L+D I   G+D  GD S+  L+ +    +SS V
Sbjct: 438 LLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFV 470


>gi|254780536|ref|YP_003064949.1| acyl-carrier-protein S-malonyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 314

 Score = 21.6 bits (44), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 44  HSLGRFTAILAFFFFATS 61
           HSLG +TA+ A   F+ S
Sbjct: 93  HSLGEYTALCAAKAFSLS 110


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 21.2 bits (43), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 78  NMHRSLVDSIKDQGNDNFGDGSSPKLDSVSAKSSSSVVAGKRS 120
           NM R  V  +K +     G G    ++SV AKSS + +  KR+
Sbjct: 695 NMQRQAVPLLKAEA-PFVGTG----MESVVAKSSGAAIVAKRA 732


>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 21.2 bits (43), Expect = 7.4,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 38  SVRSTAHSLGRFTAILAF------FFFATS---IALGMISRYTSTRYKDNMHRSLVDSIK 88
           S+    HSL +  A L+F      + F ++   IA G IS        D++HR  + S  
Sbjct: 351 SLEKVNHSLEQDIATLSFEEGGKKYLFNSNTEGIARG-ISINRDCSLGDDVHRENMFSAP 409

Query: 89  DQGNDNFGDGSSPKLDSVSAKSSSSVVAGKR 119
           +   D F +GSS    ++ + S   V   ++
Sbjct: 410 EISVDGFHEGSSLVSPALKSNSKRDVAQNRK 440


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.129    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,708
Number of Sequences: 1233
Number of extensions: 2344
Number of successful extensions: 16
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 12
length of query: 125
length of database: 328,796
effective HSP length: 64
effective length of query: 61
effective length of database: 249,884
effective search space: 15242924
effective search space used: 15242924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 33 (17.3 bits)