Query gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 264
No_of_seqs 156 out of 3001
Neff 6.4
Searched_HMMs 39220
Date Mon May 23 14:06:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780197.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13962 bifunctional phosphog 100.0 0 0 655.3 21.2 246 4-249 402-650 (653)
2 PTZ00333 triosephosphate isome 100.0 0 0 654.3 22.0 250 1-252 1-252 (252)
3 PRK00042 tpiA triosephosphate 100.0 0 0 653.6 21.9 249 4-252 1-251 (251)
4 pfam00121 TIM Triosephosphate 100.0 0 0 627.0 20.6 241 7-247 1-243 (243)
5 cd00311 TIM Triosephosphate is 100.0 0 0 611.6 20.8 242 7-248 1-242 (242)
6 COG0149 TpiA Triosephosphate i 100.0 0 0 589.3 21.6 248 4-253 1-250 (251)
7 KOG1643 consensus 100.0 0 0 581.7 17.1 245 3-250 1-246 (247)
8 PRK04302 triosephosphate isome 100.0 0 0 478.9 18.3 218 4-252 1-220 (223)
9 TIGR00419 tim triosephosphate 100.0 0 0 479.5 14.6 234 8-241 1-244 (244)
10 PRK08745 ribulose-phosphate 3- 96.9 0.044 1.1E-06 33.8 12.2 145 83-257 78-222 (223)
11 cd04722 TIM_phosphate_binding 95.9 0.17 4.4E-06 30.1 10.3 150 54-235 50-200 (200)
12 pfam03437 BtpA BtpA family. Th 95.7 0.016 4E-07 36.6 4.4 49 174-237 182-230 (254)
13 COG0434 SgcQ Predicted TIM-bar 95.4 0.053 1.3E-06 33.3 6.0 66 174-254 187-261 (263)
14 PRK05581 ribulose-phosphate 3- 94.4 0.47 1.2E-05 27.4 10.6 141 83-253 77-217 (220)
15 cd04732 HisA HisA. Phosphorib 93.8 0.61 1.5E-05 26.6 9.3 130 82-239 87-224 (234)
16 PRK13124 consensus 93.1 0.8 2E-05 25.9 8.8 120 83-239 106-228 (257)
17 cd00429 RPE Ribulose-5-phospha 92.9 0.85 2.2E-05 25.7 8.9 136 83-248 73-208 (211)
18 pfam00834 Ribul_P_3_epim Ribul 92.3 1 2.6E-05 25.2 9.6 125 83-237 73-197 (201)
19 PRK13136 consensus 91.9 1.1 2.9E-05 24.9 8.9 122 79-237 104-229 (253)
20 TIGR00734 hisAF_rel hisA/hisF 91.9 0.11 2.8E-06 31.3 2.3 59 168-239 169-227 (230)
21 cd04723 HisA_HisF Phosphoribos 90.6 0.46 1.2E-05 27.4 4.4 137 75-240 85-224 (233)
22 COG0042 tRNA-dihydrouridine sy 90.5 0.71 1.8E-05 26.2 5.3 41 206-246 199-241 (323)
23 pfam00977 His_biosynth Histidi 90.1 0.69 1.8E-05 26.3 5.0 130 82-239 87-225 (229)
24 PRK08091 ribulose-phosphate 3- 89.7 1.8 4.7E-05 23.6 10.1 179 43-253 51-233 (235)
25 PRK10550 tRNA-dihydrouridine s 89.6 0.63 1.6E-05 26.5 4.4 35 205-239 194-229 (312)
26 cd04731 HisF The cyclase subun 89.5 0.6 1.5E-05 26.7 4.3 140 75-239 78-228 (243)
27 PRK08883 ribulose-phosphate 3- 89.4 1.9 4.9E-05 23.5 10.3 144 83-256 74-217 (220)
28 COG1411 Uncharacterized protei 89.4 0.4 1E-05 27.8 3.3 61 168-241 157-217 (229)
29 TIGR02311 HpaI 2,4-dihydroxyhe 89.1 0.64 1.6E-05 26.5 4.1 145 74-255 21-202 (249)
30 PRK13585 1-(5-phosphoribosyl)- 88.8 0.77 2E-05 26.0 4.4 129 82-239 89-226 (240)
31 PRK10415 tRNA-dihydrouridine s 88.8 1.2 3.1E-05 24.8 5.4 45 204-248 193-239 (321)
32 PRK13111 trpA tryptophan synth 88.5 2.2 5.7E-05 23.1 11.7 120 83-239 106-229 (256)
33 PRK02747 consensus 88.1 2.1 5.3E-05 23.3 6.2 137 82-239 88-235 (257)
34 PRK13132 consensus 88.1 2.4 6E-05 23.0 9.0 119 83-238 106-227 (246)
35 cd04724 Tryptophan_synthase_al 87.2 2.6 6.8E-05 22.6 9.6 120 82-238 96-219 (242)
36 cd01137 PsaA Metal binding pro 86.8 2.8 7.1E-05 22.5 6.4 98 149-256 165-284 (287)
37 PRK09722 allulose-6-phosphate 86.5 2.9 7.4E-05 22.4 10.6 175 43-253 38-216 (227)
38 TIGR00737 nifR3_yhdG putative 86.5 0.99 2.5E-05 25.3 3.8 45 205-249 208-254 (336)
39 PTZ00170 D-ribulose-5-phosphat 85.6 3.2 8.2E-05 22.1 10.7 141 83-255 79-219 (224)
40 PRK13597 imidazole glycerol ph 84.5 3.6 9.2E-05 21.8 5.9 137 75-239 82-230 (252)
41 PRK02083 imidazole glycerol ph 84.2 2 5E-05 23.4 4.5 134 82-239 88-232 (253)
42 COG2069 CdhD CO dehydrogenase/ 84.1 2.4 6E-05 23.0 4.8 75 171-252 171-249 (403)
43 PRK13116 consensus 84.0 3.8 9.7E-05 21.7 9.0 53 175-237 183-238 (278)
44 TIGR00259 TIGR00259 conserved 83.8 0.83 2.1E-05 25.8 2.4 105 106-237 125-234 (261)
45 cd01573 modD_like ModD; Quinol 82.9 2.3 5.9E-05 23.0 4.4 52 179-240 212-263 (272)
46 PRK10605 N-ethylmaleimide redu 82.3 3.2 8E-05 22.2 4.9 60 167-241 269-329 (362)
47 PRK02621 consensus 82.0 2.7 6.9E-05 22.6 4.4 138 82-240 88-234 (254)
48 PRK06015 keto-hydroxyglutarate 81.7 4.7 0.00012 21.1 6.3 60 188-254 143-208 (212)
49 PRK10128 putative aldolase; Pr 81.4 3.1 7.8E-05 22.3 4.5 159 80-257 12-192 (250)
50 cd02812 PcrB_like PcrB_like pr 80.9 2.4 6.1E-05 22.9 3.8 62 174-247 156-218 (219)
51 PRK08782 consensus 80.6 5.1 0.00013 20.9 6.2 58 189-253 146-209 (219)
52 pfam03932 CutC CutC family. Co 79.3 2.5 6.5E-05 22.7 3.6 159 42-231 34-196 (202)
53 COG0159 TrpA Tryptophan syntha 79.2 5.6 0.00014 20.6 11.7 125 83-249 115-242 (265)
54 TIGR00010 TIGR00010 hydrolase, 78.3 3.6 9.3E-05 21.8 4.1 99 112-233 79-187 (269)
55 PRK05211 consensus 78.3 2.2 5.7E-05 23.1 3.0 135 81-239 78-227 (248)
56 PRK13122 consensus 77.9 6.1 0.00016 20.4 11.1 54 175-239 164-219 (242)
57 PRK00748 1-(5-phosphoribosyl)- 77.9 6.1 0.00016 20.4 8.5 131 82-239 87-226 (241)
58 PRK02145 consensus 76.7 6.6 0.00017 20.1 5.5 136 82-238 89-235 (257)
59 PRK08104 consensus 76.2 6.9 0.00017 20.1 6.2 57 189-252 144-206 (212)
60 PRK13118 consensus 75.7 7.1 0.00018 20.0 10.4 54 175-239 183-238 (269)
61 PRK13127 consensus 75.6 7.1 0.00018 20.0 11.4 54 175-238 176-231 (262)
62 TIGR03239 GarL 2-dehydro-3-deo 75.4 2.4 6.1E-05 22.9 2.5 135 81-239 24-174 (249)
63 cd02801 DUS_like_FMN Dihydrour 75.2 7.3 0.00019 19.9 6.4 46 204-249 182-229 (231)
64 TIGR01182 eda 2-dehydro-3-deox 75.2 5.4 0.00014 20.7 4.3 143 48-253 48-201 (205)
65 pfam01207 Dus Dihydrouridine s 74.8 4 0.0001 21.5 3.5 43 205-247 183-227 (309)
66 PRK04169 geranylgeranylglycery 74.6 4.5 0.00011 21.2 3.7 43 204-246 184-227 (229)
67 PRK10558 alpha-dehydro-beta-de 74.5 2.6 6.7E-05 22.7 2.5 161 53-239 10-181 (256)
68 PRK04281 consensus 74.4 6.8 0.00017 20.1 4.6 139 79-238 85-232 (254)
69 PRK09198 putative nicotinate p 74.2 5.7 0.00014 20.6 4.2 60 179-239 293-369 (462)
70 cd02911 arch_FMN Archeal FMN-b 74.0 3.5 9E-05 21.9 3.1 36 204-240 190-226 (233)
71 PRK13587 1-(5-phosphoribosyl)- 73.6 8 0.0002 19.6 8.7 134 81-240 89-227 (234)
72 PRK13115 consensus 73.3 8.1 0.00021 19.6 9.0 123 80-239 117-243 (269)
73 PRK05718 keto-hydroxyglutarate 72.6 7.8 0.0002 19.7 4.6 58 189-253 144-207 (212)
74 PRK13114 consensus 72.5 8.5 0.00022 19.5 9.4 54 175-239 179-234 (266)
75 TIGR01394 TypA_BipA GTP-bindin 72.2 2.8 7.1E-05 22.5 2.2 57 116-177 115-173 (609)
76 PRK01033 imidazole glycerol ph 72.2 6.3 0.00016 20.3 4.0 133 82-237 88-229 (253)
77 cd01016 TroA Metal binding pro 71.7 8.9 0.00023 19.4 6.1 77 168-254 183-271 (276)
78 PRK10343 RNA-binding protein Y 71.1 7.4 0.00019 19.9 4.2 81 114-213 8-88 (97)
79 PRK13134 consensus 71.0 9.2 0.00023 19.3 9.0 52 175-237 184-237 (257)
80 cd02068 radical_SAM_B12_BD B12 70.9 8.1 0.00021 19.6 4.3 63 177-250 48-110 (127)
81 PRK13123 consensus 69.0 10 0.00026 19.0 10.6 53 175-238 178-232 (256)
82 PRK13126 consensus 69.0 10 0.00026 19.0 12.5 128 79-239 84-213 (237)
83 PRK13117 consensus 68.6 10 0.00026 19.0 9.1 121 83-239 115-239 (268)
84 TIGR03572 WbuZ glycosyl amidat 68.5 7.6 0.00019 19.8 3.8 132 82-237 88-230 (232)
85 pfam00290 Trp_syntA Tryptophan 68.5 10 0.00026 18.9 11.2 120 83-239 107-230 (258)
86 cd02931 ER_like_FMN Enoate red 68.3 7.9 0.0002 19.7 3.8 52 185-245 294-346 (382)
87 pfam03982 DAGAT Diacylglycerol 67.7 5.1 0.00013 20.9 2.8 85 116-201 172-281 (297)
88 PRK13121 consensus 66.3 11 0.00029 18.7 9.0 54 175-239 183-238 (265)
89 PRK13119 consensus 66.2 12 0.00029 18.6 9.0 53 175-238 181-235 (261)
90 COG3836 HpcH 2,4-dihydroxyhept 65.9 4.9 0.00013 21.0 2.4 158 53-239 8-180 (255)
91 cd01019 ZnuA Zinc binding prot 65.6 12 0.0003 18.6 7.1 86 161-256 179-284 (286)
92 CHL00200 trpA tryptophan synth 65.5 12 0.0003 18.6 11.4 58 172-239 176-236 (263)
93 PRK07455 keto-hydroxyglutarate 64.8 12 0.00031 18.5 5.0 58 189-253 142-205 (210)
94 PRK13139 consensus 64.8 12 0.00031 18.5 9.4 121 82-238 112-235 (254)
95 pfam01729 QRPTase_C Quinolinat 64.7 12 0.00031 18.5 5.0 52 179-239 109-160 (169)
96 PRK03220 consensus 64.5 12 0.00032 18.5 5.3 54 174-241 185-239 (257)
97 COG3142 CutC Uncharacterized p 63.5 8.3 0.00021 19.5 3.2 148 42-228 35-194 (241)
98 PRK13112 consensus 63.4 13 0.00033 18.3 9.2 52 175-237 184-237 (279)
99 PRK06857 consensus 63.0 13 0.00034 18.3 6.0 58 189-253 141-204 (209)
100 PRK01659 consensus 62.5 6.2 0.00016 20.3 2.4 136 81-240 87-233 (252)
101 cd06525 GH25_Lyc-like Lyc mura 61.7 14 0.00035 18.1 7.6 48 76-126 7-54 (184)
102 PRK11572 copper homeostasis pr 61.6 14 0.00036 18.1 5.2 157 42-233 35-197 (248)
103 TIGR00381 cdhD CO dehydrogenas 61.3 8.5 0.00022 19.5 2.9 75 171-252 164-242 (401)
104 PRK11815 tRNA-dihydrouridine s 61.1 9.4 0.00024 19.2 3.1 41 205-247 205-247 (333)
105 PRK04128 1-(5-phosphoribosyl)- 60.4 15 0.00037 18.0 5.6 35 204-239 181-216 (228)
106 TIGR01769 GGGP geranylgeranylg 59.7 12 0.0003 18.6 3.4 146 24-223 42-202 (212)
107 TIGR02026 BchE magnesium-proto 59.4 3.8 9.7E-05 21.7 0.8 13 88-100 62-74 (506)
108 cd01569 PBEF_like pre-B-cell c 59.2 15 0.00039 17.9 4.2 60 179-239 291-367 (407)
109 PRK13131 consensus 59.1 15 0.00039 17.8 9.5 56 173-238 173-231 (257)
110 pfam01183 Glyco_hydro_25 Glyco 58.8 13 0.00034 18.2 3.6 49 76-127 5-53 (177)
111 cd02933 OYE_like_FMN Old yello 57.7 13 0.00034 18.3 3.4 47 186-241 275-322 (338)
112 TIGR01083 nth endonuclease III 56.0 4.7 0.00012 21.1 0.9 41 185-228 68-115 (192)
113 PRK13125 trpA tryptophan synth 55.5 18 0.00045 17.5 12.7 124 83-239 97-222 (247)
114 cd00951 KDGDH 5-dehydro-4-deox 54.9 18 0.00046 17.4 5.0 48 204-252 175-222 (289)
115 COG1027 AspA Aspartate ammonia 54.7 7.8 0.0002 19.7 1.8 25 171-195 231-255 (471)
116 PRK08005 ribulose-phosphate 3- 54.4 18 0.00047 17.4 9.1 136 83-252 74-209 (210)
117 TIGR01817 nifA Nif-specific re 54.2 3 7.6E-05 22.3 -0.4 44 71-123 285-333 (574)
118 PRK13129 consensus 54.1 19 0.00048 17.3 11.0 57 173-239 181-240 (267)
119 cd06413 GH25_muramidase_1 Unch 54.0 19 0.00048 17.3 7.7 49 76-127 10-58 (191)
120 pfam01297 SBP_bac_9 Periplasmi 53.5 19 0.00049 17.3 7.1 96 146-253 152-266 (272)
121 PRK13586 1-(5-phosphoribosyl)- 53.5 19 0.00049 17.3 5.9 134 82-239 86-222 (231)
122 TIGR01149 mtrG tetrahydrometha 53.2 4.2 0.00011 21.4 0.2 33 181-213 23-56 (72)
123 PRK08057 cobalt-precorrin-6x r 53.1 13 0.00032 18.4 2.7 13 226-238 212-224 (241)
124 PRK06096 molybdenum transport 53.0 19 0.0005 17.2 4.6 50 179-238 218-267 (284)
125 pfam03328 HpcH_HpaI HpcH/HpaI 52.7 16 0.0004 17.8 3.1 62 177-239 92-155 (221)
126 COG0106 HisA Phosphoribosylfor 52.2 20 0.00051 17.1 10.3 137 82-239 89-226 (241)
127 TIGR00839 aspA aspartate ammon 51.2 7.4 0.00019 19.8 1.2 25 170-194 227-251 (469)
128 cd01571 NAPRTase_B Nicotinate 51.0 21 0.00053 17.0 5.4 54 183-240 226-279 (302)
129 cd06414 GH25_LytC-like The Lyt 50.5 21 0.00054 17.0 3.7 51 76-126 8-58 (191)
130 cd02803 OYE_like_FMN_family Ol 49.8 22 0.00056 16.9 3.6 151 82-245 146-322 (327)
131 TIGR00979 fumC_II fumarate hyd 49.5 8.7 0.00022 19.4 1.4 85 114-199 166-256 (459)
132 PRK08385 nicotinate-nucleotide 49.4 22 0.00057 16.9 4.3 55 179-240 212-266 (279)
133 pfam06948 consensus 48.8 8.9 0.00023 19.3 1.3 39 91-131 36-74 (112)
134 cd06412 GH25_CH-type CH-type ( 48.6 23 0.00058 16.8 3.6 48 76-126 8-55 (199)
135 pfam01745 IPT Isopentenyl tran 48.4 16 0.00041 17.7 2.6 33 184-219 73-105 (232)
136 cd01169 HMPP_kinase 4-amino-5- 48.2 9 0.00023 19.3 1.3 96 36-131 69-172 (242)
137 cd00599 GH25_muramidase Endo-N 48.2 23 0.00059 16.7 7.8 48 76-126 7-54 (186)
138 PRK08904 consensus 47.9 23 0.0006 16.7 4.4 160 36-253 36-202 (207)
139 cd00405 PRAI Phosphoribosylant 47.5 24 0.0006 16.7 3.5 47 173-234 135-181 (203)
140 PRK13138 consensus 47.0 24 0.00062 16.6 9.9 122 82-237 110-234 (264)
141 TIGR03249 KdgD 5-dehydro-4-deo 46.5 25 0.00063 16.6 4.9 132 85-251 94-226 (296)
142 TIGR00007 TIGR00007 phosphorib 46.5 18 0.00047 17.4 2.6 124 83-239 88-233 (241)
143 PRK07428 nicotinate-nucleotide 44.9 26 0.00066 16.4 4.4 49 179-236 222-270 (285)
144 cd02930 DCR_FMN 2,4-dienoyl-Co 44.8 23 0.00059 16.7 3.0 54 185-247 265-319 (353)
145 pfam01884 PcrB PcrB family. Th 44.1 27 0.00068 16.4 3.9 37 204-240 181-217 (231)
146 cd04734 OYE_like_3_FMN Old yel 43.7 21 0.00053 17.0 2.6 52 185-245 274-326 (343)
147 COG2730 BglC Endoglucanase [Ca 43.7 27 0.00069 16.3 6.6 131 62-197 55-217 (407)
148 cd04733 OYE_like_2_FMN Old yel 43.6 18 0.00046 17.4 2.3 151 84-245 156-333 (338)
149 KOG2683 consensus 43.1 28 0.00071 16.3 4.1 45 204-249 223-268 (305)
150 cd00950 DHDPS Dihydrodipicolin 41.1 30 0.00076 16.1 4.7 45 204-252 178-222 (284)
151 PRK01222 N-(5'-phosphoribosyl) 41.0 30 0.00076 16.1 6.0 110 84-233 71-183 (212)
152 cd01568 QPRTase_NadC Quinolina 40.7 30 0.00077 16.0 3.7 51 179-239 210-260 (269)
153 COG0324 MiaA tRNA delta(2)-iso 40.7 26 0.00067 16.4 2.7 52 77-130 46-99 (308)
154 cd06416 GH25_Lys1-like Lys-1 i 40.7 30 0.00077 16.0 3.7 48 76-126 8-55 (196)
155 cd00578 L-fuc_L-ara-isomerases 40.0 31 0.00079 16.0 4.7 77 18-100 48-137 (452)
156 COG2099 CobK Precorrin-6x redu 40.0 31 0.00079 16.0 3.2 50 73-129 179-228 (257)
157 pfam02310 B12-binding B12 bind 39.1 32 0.00081 15.9 4.5 52 178-237 62-114 (121)
158 PRK13120 consensus 39.0 32 0.00082 15.9 8.1 53 174-237 185-240 (285)
159 PRK03620 5-dehydro-4-deoxygluc 38.9 32 0.00082 15.8 4.9 23 227-249 198-220 (296)
160 PRK13137 consensus 38.9 32 0.00082 15.8 4.7 52 175-237 189-243 (266)
161 PRK00830 consensus 38.7 28 0.00072 16.2 2.6 52 174-238 199-251 (273)
162 TIGR02061 aprA adenylylsulfate 38.7 12 0.00031 18.5 0.8 65 68-147 455-520 (651)
163 PRK13135 consensus 38.6 32 0.00083 15.8 9.1 54 175-239 182-237 (267)
164 PRK06843 inositol-5-monophosph 38.3 33 0.00084 15.8 5.0 63 183-251 177-250 (404)
165 TIGR03297 Ppyr-DeCO2ase phosph 38.0 33 0.00085 15.8 3.6 61 65-131 90-150 (361)
166 COG1646 Predicted phosphate-bi 37.8 33 0.00085 15.7 11.6 48 205-252 191-239 (240)
167 COG0269 SgbH 3-hexulose-6-phos 37.5 34 0.00086 15.7 8.4 136 74-242 64-200 (217)
168 PRK05848 nicotinate-nucleotide 36.8 35 0.00089 15.6 4.4 54 179-241 210-263 (272)
169 COG0029 NadB Aspartate oxidase 36.4 35 0.0009 15.6 2.8 34 94-127 115-152 (518)
170 cd00516 PRTase_typeII Phosphor 36.1 36 0.00091 15.6 5.6 60 179-240 214-273 (281)
171 pfam00697 PRAI N-(5'phosphorib 36.0 36 0.00091 15.6 3.9 47 173-233 127-173 (195)
172 PRK00112 tgt queuine tRNA-ribo 35.5 36 0.00093 15.5 7.8 77 176-253 149-236 (366)
173 PRK06427 phosphomethylpyrimidi 35.5 19 0.0005 17.2 1.4 36 96-131 139-178 (266)
174 TIGR01334 modD modD protein; I 35.5 36 0.00093 15.5 3.5 104 86-225 150-255 (277)
175 PRK12425 fumarate hydratase; P 35.3 26 0.00066 16.4 2.0 70 120-195 172-252 (464)
176 PRK00147 queA S-adenosylmethio 35.1 28 0.00072 16.2 2.1 31 98-133 226-256 (345)
177 KOG2335 consensus 34.9 37 0.00095 15.5 4.0 116 106-243 123-243 (358)
178 COG2247 LytB Putative cell wal 34.3 26 0.00066 16.4 1.8 48 83-135 93-144 (337)
179 KOG1552 consensus 33.7 39 0.00099 15.3 4.6 64 164-233 91-158 (258)
180 cd01017 AdcA Metal binding pro 33.7 39 0.00099 15.3 6.1 99 146-256 158-279 (282)
181 TIGR02343 chap_CCT_epsi T-comp 33.6 35 0.00089 15.6 2.4 39 181-220 396-434 (541)
182 pfam08543 Phos_pyr_kin Phospho 33.3 25 0.00063 16.6 1.6 97 36-132 61-164 (246)
183 cd06419 GH25_muramidase_2 Unch 33.1 40 0.001 15.3 3.7 50 76-128 15-64 (190)
184 PRK04147 N-acetylneuraminate l 33.1 40 0.001 15.3 4.6 27 226-252 199-225 (294)
185 pfam04095 NAPRTase Nicotinate 32.9 40 0.001 15.2 4.6 63 177-239 115-184 (243)
186 TIGR01591 Fdh-alpha formate de 32.3 41 0.001 15.2 5.3 190 20-225 78-319 (694)
187 KOG3859 consensus 32.2 32 0.00081 15.9 2.0 30 107-137 216-245 (406)
188 PRK05567 inositol-5'-monophosp 31.9 42 0.0011 15.1 4.0 44 185-234 254-297 (486)
189 COG3370 Uncharacterized protei 31.8 21 0.00053 17.0 1.0 39 91-131 37-75 (113)
190 TIGR00715 precor6x_red precorr 31.7 42 0.0011 15.1 5.4 80 35-129 152-232 (260)
191 pfam03599 CdhD CO dehydrogenas 31.4 42 0.0011 15.1 5.1 23 110-132 43-65 (384)
192 cd01572 QPRTase Quinolinate ph 31.1 43 0.0011 15.1 3.8 49 179-239 211-259 (268)
193 pfam02750 Synapsin_C Synapsin, 30.8 17 0.00043 17.6 0.4 170 47-250 16-197 (203)
194 PRK03170 dihydrodipicolinate s 30.7 43 0.0011 15.0 4.7 27 226-252 197-223 (292)
195 cd01410 SIRT7 SIRT7: Eukaryoti 30.7 44 0.0011 15.0 3.1 47 207-253 134-181 (206)
196 cd06137 DEDDh_RNase This group 30.7 27 0.0007 16.3 1.5 12 89-100 81-92 (161)
197 KOG0926 consensus 30.2 17 0.00044 17.5 0.4 104 113-237 261-365 (1172)
198 PRK13113 consensus 30.2 44 0.0011 15.0 11.4 120 83-239 115-238 (263)
199 pfam11918 DUF3436 Domain of un 29.7 35 0.0009 15.6 1.9 43 153-195 7-51 (55)
200 TIGR01163 rpe ribulose-phospha 29.0 47 0.0012 14.8 3.7 129 83-241 74-204 (216)
201 COG4064 MtrG Tetrahydromethano 28.8 16 0.00041 17.7 0.1 35 179-213 12-57 (75)
202 TIGR02028 ChlP geranylgeranyl 28.4 35 0.0009 15.6 1.7 26 172-197 221-247 (401)
203 cd00954 NAL N-Acetylneuraminic 28.0 48 0.0012 14.7 4.7 45 204-252 180-224 (288)
204 PRK01008 queuine tRNA-ribosylt 28.0 49 0.0012 14.7 8.3 75 177-253 166-251 (372)
205 KOG3798 consensus 27.8 36 0.00091 15.6 1.6 29 164-193 263-291 (343)
206 pfam02682 AHS1 Allophanate hyd 27.6 49 0.0013 14.7 4.9 67 160-247 49-120 (202)
207 PRK12273 aspA aspartate ammoni 27.4 43 0.0011 15.0 2.0 33 163-195 217-256 (471)
208 PRK12616 pyridoxal kinase; Rev 27.1 21 0.00054 17.0 0.4 95 37-131 76-179 (270)
209 cd00452 KDPG_aldolase KDPG and 27.0 50 0.0013 14.6 4.2 143 36-236 30-173 (190)
210 TIGR03471 HpnJ hopanoid biosyn 26.6 51 0.0013 14.6 4.3 20 222-241 292-311 (472)
211 TIGR01496 DHPS dihydropteroate 26.1 49 0.0012 14.7 2.1 175 20-239 58-239 (268)
212 COG0800 Eda 2-keto-3-deoxy-6-p 25.9 53 0.0013 14.5 5.0 158 36-252 39-204 (211)
213 TIGR02408 ectoine_ThpD ectoine 25.9 53 0.0014 14.5 3.4 21 126-150 172-192 (278)
214 PRK12412 pyridoxal kinase; Rev 25.6 24 0.00062 16.6 0.5 97 36-132 73-177 (268)
215 TIGR02774 rexB_recomb ATP-depe 25.6 52 0.0013 14.5 2.2 80 119-211 247-334 (1116)
216 TIGR01672 AphA HAD superfamily 25.5 47 0.0012 14.8 2.0 90 111-219 120-210 (248)
217 COG2144 Selenophosphate synthe 25.4 54 0.0014 14.4 2.9 21 230-253 261-281 (324)
218 pfam00724 Oxidored_FMN NADH:fl 25.3 54 0.0014 14.4 3.5 40 205-245 286-327 (336)
219 cd01709 RT_like_1 RT_like_1: A 25.3 28 0.00073 16.2 0.8 96 142-251 203-318 (346)
220 TIGR02915 PEP_resp_reg putativ 25.0 21 0.00053 17.1 0.0 21 112-133 154-174 (451)
221 KOG1051 consensus 25.0 38 0.00097 15.4 1.4 130 95-239 254-386 (898)
222 cd06522 GH25_AtlA-like AtlA is 24.8 55 0.0014 14.4 3.1 53 76-131 8-64 (192)
223 pfam05963 Cytomega_US3 Cytomeg 24.8 23 0.0006 16.7 0.3 59 44-103 20-81 (187)
224 PRK00043 thiE thiamine-phospha 24.6 56 0.0014 14.3 6.8 123 82-242 72-194 (210)
225 PRK13210 putative L-xylulose 5 24.6 56 0.0014 14.3 3.4 62 110-172 94-156 (284)
226 COG2358 Imp TRAP-type uncharac 24.4 31 0.00078 16.0 0.8 67 36-103 54-125 (321)
227 TIGR01823 PabB-fungal para-ami 24.1 43 0.0011 15.1 1.5 79 91-169 333-430 (851)
228 cd01412 SIRT5_Af1_CobB SIRT5_A 23.8 58 0.0015 14.2 3.7 45 208-252 145-189 (224)
229 COG0214 SNZ1 Pyridoxine biosyn 23.7 58 0.0015 14.2 4.4 41 208-249 212-256 (296)
230 PRK00485 fumC fumarate hydrata 23.5 58 0.0015 14.2 2.1 22 172-193 231-252 (462)
231 PRK13133 consensus 23.1 60 0.0015 14.2 7.8 119 82-238 116-243 (267)
232 COG1217 TypA Predicted membran 23.0 50 0.0013 14.7 1.7 67 76-151 80-146 (603)
233 cd02929 TMADH_HD_FMN Trimethyl 22.9 60 0.0015 14.1 6.8 52 185-245 278-330 (370)
234 pfam06200 tify tify domain. Th 22.7 32 0.00082 15.8 0.6 23 203-225 5-33 (36)
235 COG5405 HslV ATP-dependent pro 22.7 24 0.00061 16.6 -0.0 14 164-177 116-130 (178)
236 TIGR01228 hutU urocanate hydra 22.2 62 0.0016 14.1 2.8 23 79-101 121-143 (547)
237 TIGR01304 IMP_DH_rel_2 IMP deh 21.8 63 0.0016 14.0 4.0 103 108-239 118-227 (376)
238 PRK08662 nicotinate phosphorib 21.8 63 0.0016 14.0 5.0 52 183-239 242-293 (343)
239 PRK13140 consensus 21.7 64 0.0016 14.0 9.3 55 175-239 180-236 (257)
240 TIGR02837 spore_II_R stage II 21.6 33 0.00083 15.8 0.5 59 85-153 38-96 (172)
241 pfam04414 tRNA_deacylase D-ami 21.6 64 0.0016 14.0 3.0 83 42-133 50-139 (214)
242 pfam05913 DUF871 Bacterial pro 21.3 65 0.0017 13.9 3.8 152 77-251 62-236 (357)
243 PRK08573 phosphomethylpyrimidi 21.3 37 0.00093 15.5 0.7 14 87-100 159-174 (443)
244 PRK07695 transcriptional regul 21.2 65 0.0017 13.9 7.4 68 163-241 117-184 (202)
245 TIGR00868 hCaCC calcium-activa 21.2 35 0.0009 15.6 0.6 16 114-129 173-188 (874)
246 smart00796 AHS1 Allophanate hy 20.9 66 0.0017 13.9 2.6 66 160-246 49-120 (201)
247 KOG1482 consensus 20.9 55 0.0014 14.4 1.5 38 164-201 310-356 (379)
248 pfam01081 Aldolase KDPG and KH 20.7 67 0.0017 13.9 5.0 150 36-243 34-184 (196)
249 pfam00478 IMPDH IMP dehydrogen 20.6 67 0.0017 13.8 4.0 61 185-251 249-320 (467)
250 COG2513 PrpB PEP phosphonomuta 20.5 68 0.0017 13.8 3.5 31 208-240 210-240 (289)
251 TIGR01818 ntrC nitrogen regula 20.4 33 0.00083 15.8 0.3 21 112-133 147-167 (471)
252 pfam01175 Urocanase Urocanase. 20.1 69 0.0018 13.8 2.2 10 141-150 245-254 (545)
No 1
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=655.33 Aligned_cols=246 Identities=41% Similarity=0.676 Sum_probs=234.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCH
Q ss_conf 88506998646568999999999999522234577119996896559999997325763102220122233343321206
Q gi|254780197|r 4 GIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISA 83 (264)
Q Consensus 4 ~mK~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa 83 (264)
.|||||+||||||++..+...|.+.+.....+...++|++||||++|..+.+.+++++|.+|||||||++.||||||||+
T Consensus 402 ~RkpiiaGNWKMn~t~~ea~~~~~~l~~~~~~~~~~ev~i~ppft~l~~~~~~~~~s~i~~GAQn~~~~~~GA~TGEiS~ 481 (653)
T PRK13962 402 ARKPIIAGNWKMHKTHAEAKEFVSKLVFILKDVQRVEVVVCPPFTALRSVKEALDGSNIKLGAQNVFYEEKGAYTGEISP 481 (653)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCH
T ss_conf 88726886578788999999999999975688557659997887339999998579981798463789878587452119
Q ss_pred HHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCC--CCC
Q ss_conf 777540731001042000221357999999999999833474799816552033349800011100222100000--013
Q gi|254780197|r 84 NMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEF--KSS 161 (264)
Q Consensus 84 ~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~--~~~ 161 (264)
.||+|+||+||||||||||++|+|||+.|++|+.+|+++||+||+||||++++|+++++.+++.+||...|.++. +.+
T Consensus 482 ~mL~~~g~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE~~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~ 561 (653)
T PRK13962 482 GMLKDIGVEYVIIGHSERRQYFGETDELINRKVKAVLKAGLTPILCVGETLEEREKGLTFEVVRGQLKEGLAGLSAEDVK 561 (653)
T ss_pred HHHHHCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHC
T ss_conf 99998699999979156526269898999999999998869899991898999867896899999999998569978848
Q ss_pred CCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHH-HCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 41132051353045576431124554467999999633224-16430886277898789999668989688974343588
Q gi|254780197|r 162 VPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 162 ~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~-~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
++|||||||||||||++|+|++++++|.+||+.+.+.|++. ++++||||||||||+|+++|+++++|||+|||||||++
T Consensus 562 ~iviAYEPvWAIGTG~~a~~~~~~e~~~~Ir~~l~~~~~~~~a~~i~IlYGGSV~~~N~~~l~~~~~vDG~LVGgASL~~ 641 (653)
T PRK13962 562 KVVIAYEPVWAIGTGKVATPKQAQEVHAFIRAVLAEMFGEEAARSVRILYGGSVKPDNALGLMEQPDIDGGLVGGASLKA 641 (653)
T ss_pred CEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
T ss_conf 78999882774489999899999999999999999872955508552886188898999999668898868821586798
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780197|r 241 ELFLKIVEI 249 (264)
Q Consensus 241 ~~F~~Ii~~ 249 (264)
++|++|++.
T Consensus 642 ~~F~~Iik~ 650 (653)
T PRK13962 642 EEFARIMRY 650 (653)
T ss_pred HHHHHHHCC
T ss_conf 899998587
No 2
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=654.30 Aligned_cols=250 Identities=38% Similarity=0.609 Sum_probs=234.6
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCC
Q ss_conf 99888506998646568999999999999522234577119996896559999997325763102220122233343321
Q gi|254780197|r 1 MKVGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGD 80 (264)
Q Consensus 1 m~~~mK~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGe 80 (264)
|-++|||+||||||||++..+...|.+.+..... ..++++++||||+||..+.+.++++++.+||||||+++.||||||
T Consensus 1 mm~~rk~iIi~NWKMn~~~~~~~~~~~~~~~~~~-~~~~~v~i~Pp~~~l~~~~~~~~~~~i~igaQn~~~~~~Ga~TGe 79 (252)
T PTZ00333 1 MMKKRKKFVGGNWKCNGSKASISELIDSFNKLKF-DNNVDVVVSPSSLHIPMVLQKLKNNKFAVGAQNVSSAGSGAFTGE 79 (252)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 9988972899982237999999999999872567-899869997999999999998168984673101344678787676
Q ss_pred CCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCC-C
Q ss_conf 206777540731001042000221357999999999999833474799816552033349800011100222100000-0
Q gi|254780197|r 81 ISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEF-K 159 (264)
Q Consensus 81 iSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~-~ 159 (264)
||+.||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++++|.+++.+||..++..+. .
T Consensus 80 iSa~mL~d~g~~yviiGHSERR~~f~Etd~~i~~K~~~al~~~l~pIlCIGE~~~er~~g~~~~vl~~Ql~~~~~~~~~~ 159 (252)
T PTZ00333 80 ISAEMLKDLGIEWVIIGHSERRQYFGETDEIVAQKVKNALNNGLKVILCIGETLQEREAGQTSAVLLTQLKAIAKKVKED 159 (252)
T ss_pred CCHHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 89999998699989977589898729987999999999998599799993775998864677999999999987314132
Q ss_pred CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHH-HCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 1341132051353045576431124554467999999633224-164308862778987899996689896889743435
Q gi|254780197|r 160 SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 160 ~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~-~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
.+++|||||||||||||++|+|++|+++|++||++|.++|+.. ++++|||||||||++|+++|+++++|||+|||||||
T Consensus 160 ~~~iiIAYEPvWAIGTG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ILYGGSVn~~Na~~i~~~~~vDG~LVGgASL 239 (252)
T PTZ00333 160 WDKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRIIYGGSVNEKNCHELIKQPDIDGFLVGGASL 239 (252)
T ss_pred HHCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHHC
T ss_conf 32418996676535889999999999999999999998718545067748872777999999996688999789600537
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 88999999999999
Q gi|254780197|r 239 QHELFLKIVEIVER 252 (264)
Q Consensus 239 ~~~~F~~Ii~~~~~ 252 (264)
|+ +|++||++++|
T Consensus 240 ~~-~F~~Ii~~a~k 252 (252)
T PTZ00333 240 KP-EFVDIIKAAEK 252 (252)
T ss_pred CH-HHHHHHHHHCC
T ss_conf 97-89999998509
No 3
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=653.60 Aligned_cols=249 Identities=39% Similarity=0.667 Sum_probs=235.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCH
Q ss_conf 88506998646568999999999999522234577119996896559999997325763102220122233343321206
Q gi|254780197|r 4 GIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISA 83 (264)
Q Consensus 4 ~mK~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa 83 (264)
||||||+||||||++..+...|.+.+........++++++|||++||..+.+.+++++|.+||||||+.+.||||||||+
T Consensus 1 MrkkiIiaNWKmn~~~~~~~~~~~~l~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~~i~igaQn~~~~~~Ga~TGeiSa 80 (251)
T PRK00042 1 MRKPIIAGNWKMNKTLAEAKELVEELAALLPDADGVEVAVAPPFTYLSSVKEALEGSNLKLGAQNVHFEDSGAFTGEISP 80 (251)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCH
T ss_conf 99888999735488999999999999974666689879997999999999998279996799725787777677575609
Q ss_pred HHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCC--CC
Q ss_conf 7775407310010420002213579999999999998334747998165520333498000111002221000000--13
Q gi|254780197|r 84 NMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFK--SS 161 (264)
Q Consensus 84 ~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~--~~ 161 (264)
.||+|+||+||||||||||.+|+|||+.|++|+++|++++|+||+||||++++|+.|.+.++|.+||+.++.++.. .+
T Consensus 81 ~mL~d~G~~yviiGHSERR~~f~Et~~~i~~K~~~al~~~l~pI~CIGE~~~~r~~g~~~~~l~~Ql~~~l~~~~~~~~~ 160 (251)
T PRK00042 81 AMLKELGVKYVIIGHSERRTYFGETDELVNKKVKAALKHGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLGAEDFA 160 (251)
T ss_pred HHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHCC
T ss_conf 99997599979975588776469987999999999998699289993673886546787899999999999668987705
Q ss_pred CCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 41132051353045576431124554467999999633224164308862778987899996689896889743435889
Q gi|254780197|r 162 VPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 162 ~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
++|||||||||||||++|++++|+++|++||+++.+.++..++++|||||||||++|+++|+++++|||+||||||||++
T Consensus 161 ~iiIAYEPvWAIGTG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~IlYGGSVn~~N~~~i~~~~~vDG~LVGgASL~~~ 240 (251)
T PRK00042 161 NLVIAYEPVWAIGTGKTATPEQAQEVHAFIRKVLAELYAEVAEKVRILYGGSVKPDNAAELFAQPDIDGALVGGASLKAE 240 (251)
T ss_pred CEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHHCCHH
T ss_conf 35999675775079999999999999999999999860523057538871778998999996688999798515867989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780197|r 242 LFLKIVEIVER 252 (264)
Q Consensus 242 ~F~~Ii~~~~~ 252 (264)
+|++||+++.+
T Consensus 241 ~F~~Ii~aa~~ 251 (251)
T PRK00042 241 DFLAIVKAAAK 251 (251)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999619
No 4
>pfam00121 TIM Triosephosphate isomerase.
Probab=100.00 E-value=0 Score=627.02 Aligned_cols=241 Identities=41% Similarity=0.687 Sum_probs=228.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 06998646568999999999999522234577119996896559999997325763102220122233343321206777
Q gi|254780197|r 7 PLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANML 86 (264)
Q Consensus 7 ~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL 86 (264)
||||||||||++..+...|.+.+........++++++|||++||..+.+.+++++|.+||||||+++.||||||||+.||
T Consensus 1 piiiaNWKMn~~~~~~~~~~~~~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~~i~igaQn~~~~~~Ga~TGeiSa~mL 80 (243)
T pfam00121 1 PIIIGNWKMNKTLAEALELAKALLAAALKNDGVEVVVAPPFTYLSPVSQALKGSNIKVGAQNVSAEDSGAFTGEVSAEML 80 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 97999416589999999999999863467789569997999999999998458996798323545678887476539999
Q ss_pred HHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCC--CCCCE
Q ss_conf 5407310010420002213579999999999998334747998165520333498000111002221000000--13411
Q gi|254780197|r 87 ADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFK--SSVPV 164 (264)
Q Consensus 87 ~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~--~~~~i 164 (264)
+|+||+||||||||||++|+|||+.|++|+++|++++|+||+||||++++|+++++.+++.+||..+++++.. .++++
T Consensus 81 ~d~g~~yviiGHSERR~~f~Etd~~I~~K~~~al~~~l~pIlCiGEt~~~r~~~~~~~~l~~Ql~~~l~~i~~~~~~~ii 160 (243)
T pfam00121 81 KDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKLGLTPVLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEALKNLI 160 (243)
T ss_pred HHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCEE
T ss_conf 97599989984489898829988999999999998799399994671664435678999999999999678987715639
Q ss_pred EEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHH
Q ss_conf 32051353045576431124554467999999633224164308862778987899996689896889743435889999
Q gi|254780197|r 165 IAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 (264)
Q Consensus 165 IAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~ 244 (264)
|||||+||||||++|++++|+++|++||+++.++++..++++|||||||||++|+++|+++++|||+||||||||+++|.
T Consensus 161 IAYEPvWAIGtG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~iLYGGSVn~~N~~~i~~~~~vdG~LVGgASL~~~~F~ 240 (243)
T pfam00121 161 IAYEPVWAIGTGKVATPEQAQEVHAFIRKYLAELSKEVAEEVRILYGGSVNPDNAKELLAQPDIDGFLVGGASLKAESFL 240 (243)
T ss_pred EEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEECCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHH
T ss_conf 99678222489999999999999999999999845423166428971768998999996688998798416867978888
Q ss_pred HHH
Q ss_conf 999
Q gi|254780197|r 245 KIV 247 (264)
Q Consensus 245 ~Ii 247 (264)
+|+
T Consensus 241 ~Ii 243 (243)
T pfam00121 241 AII 243 (243)
T ss_pred HHC
T ss_conf 549
No 5
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=0 Score=611.60 Aligned_cols=242 Identities=43% Similarity=0.710 Sum_probs=232.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 06998646568999999999999522234577119996896559999997325763102220122233343321206777
Q gi|254780197|r 7 PLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANML 86 (264)
Q Consensus 7 ~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL 86 (264)
|||+||||||++..+...|.+.+........++++++|||+++|..+.+.+++++|.+||||||+.+.||||||||+.||
T Consensus 1 piiiaNWKmn~~~~~~~~~~~~~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mL 80 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML 80 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 97999414489999999999999862567689769998998999999998358984698401434568887474559999
Q ss_pred HHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEE
Q ss_conf 54073100104200022135799999999999983347479981655203334980001110022210000001341132
Q gi|254780197|r 87 ADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIA 166 (264)
Q Consensus 87 ~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIA 166 (264)
+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|+++++.+++.+|+...+.++.+.++++||
T Consensus 81 ~d~G~~~viiGHSERR~~~~Et~~~i~~K~~~a~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIA 160 (242)
T cd00311 81 KDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIA 160 (242)
T ss_pred HHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCEEEE
T ss_conf 97599989975589898819987999999999998799279993660665540439999999999998471010360999
Q ss_pred ECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHH
Q ss_conf 05135304557643112455446799999963322416430886277898789999668989688974343588999999
Q gi|254780197|r 167 YEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKI 246 (264)
Q Consensus 167 YEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~I 246 (264)
|||+||||||++|++++++++|++||+++.+.++..++++|||||||||++|+++++++++|||+||||||||+++|.+|
T Consensus 161 YEPvWAIGtG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LvG~ASl~~~~F~~I 240 (242)
T cd00311 161 YEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESFLDI 240 (242)
T ss_pred ECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHH
T ss_conf 77688618999999999999999999999986202036754896077898899999568999978853576788899998
Q ss_pred HH
Q ss_conf 99
Q gi|254780197|r 247 VE 248 (264)
Q Consensus 247 i~ 248 (264)
++
T Consensus 241 i~ 242 (242)
T cd00311 241 IK 242 (242)
T ss_pred HC
T ss_conf 69
No 6
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=589.31 Aligned_cols=248 Identities=42% Similarity=0.700 Sum_probs=230.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCC-CCCCEEEEECCHHHHHHHHHHHC-CCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 88506998646568999999999999522234-57711999689655999999732-57631022201222333433212
Q gi|254780197|r 4 GIRPLVVGNWKMHGLRLSLERIQKIVEGIRRN-SCCIDVAICPPATLIYESSRLCK-TSSVIIGAQDCHIAEYGPYTGDI 81 (264)
Q Consensus 4 ~mK~iIigNWKMN~~~~~~~~~~~~~~~~~~~-~~~veivi~Pp~~~L~~~~~~~~-~s~I~igAQnv~~~~~GA~TGei 81 (264)
+||++|+||||||++......+...+...... ...++++||||+++|..+.+.++ + +|.+||||||+.++|||||||
T Consensus 1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g-~i~~gAQn~~~~~~GA~TGei 79 (251)
T COG0149 1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIG-NIKVGAQNVDPEDSGAFTGEI 79 (251)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHCCC-CCEEEECCCCCCCCCCCCCCC
T ss_conf 9876799972558375778999999862135555660599958877899999985247-831774668865577866838
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 06777540731001042000221357999999999999833474799816552033349800011100222100000013
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
|+.||+|+|++||||||||||.+|+|+|+.|++|+++|+++||+||+||||++++||+|+|.+|+.+|+...+.+....+
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~ 159 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEA 159 (251)
T ss_pred CHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999986998899785011243563469999999999988996899858977777555668899999999987448543
Q ss_pred CCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 41132051353045576431124554467999999633224164308862778987899996689896889743435889
Q gi|254780197|r 162 VPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 162 ~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
+++|||||+||||||++||+++++++|.+||..+.++|++. +.+|||||||||++|+.+++.+++|||+|||||||+++
T Consensus 160 ~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~-~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~ 238 (251)
T COG0149 160 NIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE-EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD 238 (251)
T ss_pred CEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEECCH
T ss_conf 73999878888458988898889999999999999744877-87579971776855799996589998689721330525
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780197|r 242 LFLKIVEIVERV 253 (264)
Q Consensus 242 ~F~~Ii~~~~~~ 253 (264)
+|..|++.+.+.
T Consensus 239 ~f~~ii~~~~~~ 250 (251)
T COG0149 239 DFLAILEALAKA 250 (251)
T ss_pred HHHHHHHHHHHC
T ss_conf 599999998643
No 7
>KOG1643 consensus
Probab=100.00 E-value=0 Score=581.71 Aligned_cols=245 Identities=38% Similarity=0.622 Sum_probs=233.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 88850699864656899999999999952223457711999689655999999732576310222012223334332120
Q gi|254780197|r 3 VGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDIS 82 (264)
Q Consensus 3 ~~mK~iIigNWKMN~~~~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiS 82 (264)
|.+|.++.||||||++++++..+.+.++.... +.+++++++||++||..+...++ ..|.++||||+...+||||||+|
T Consensus 1 MarkffvgGNwKmngs~~s~~eii~~ln~a~~-~~~vevvi~pP~~Yl~~ak~~l~-~~i~v~aQn~~~~k~GafTGEiS 78 (247)
T KOG1643 1 MARKFFVGGNWKMNGSKQSIKEIIKTLNAAKL-PANVEVVIAPPAPYLDYAKSKLK-PDIGVAAQNCYKVKSGAFTGEIS 78 (247)
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEECCHHHHHHHHHHCC-CCCEEECCEEEECCCCCCCCCCC
T ss_conf 98655754641216758999999998665117-88876898088258999987477-53356212112036766347568
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
++||+|+|++|||+||||||+.|+|+|+.|.+|+..|+..||.+|.||||+++|||+|+|.+|+.+||..+...+.++++
T Consensus 79 ~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~n 158 (247)
T KOG1643 79 AEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSN 158 (247)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998679978995446664350773478999999999758759999466277663486278999999999985478643
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH-HHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 113205135304557643112455446799999963322-4164308862778987899996689896889743435889
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPE-EGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~-~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
++||||||||||||++|+|++++|+|..||.|++++.+. .++.+||+||||||..||++|++.++|||||||||||+||
T Consensus 159 iviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~el~~~~diDGFLVGGaSLKpe 238 (247)
T KOG1643 159 IVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKELAKKPDIDGFLVGGASLKPE 238 (247)
T ss_pred EEEEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECCCCCCCCHHHHCCCCCCCCEEECCCCCCHH
T ss_conf 28985033665178779878999999999999863111666533378964655663478763654566347757546817
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780197|r 242 LFLKIVEIV 250 (264)
Q Consensus 242 ~F~~Ii~~~ 250 (264)
|++|++..
T Consensus 239 -F~~Iin~~ 246 (247)
T KOG1643 239 -FVDIINAR 246 (247)
T ss_pred -HHHHHHCC
T ss_conf -98765325
No 8
>PRK04302 triosephosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=478.93 Aligned_cols=218 Identities=21% Similarity=0.271 Sum_probs=184.7
Q ss_pred CCCEEEEEEECCCCCH--HHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 8850699864656899--99999999995222345771199968965599999973257631022201222333433212
Q gi|254780197|r 4 GIRPLVVGNWKMHGLR--LSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDI 81 (264)
Q Consensus 4 ~mK~iIigNWKMN~~~--~~~~~~~~~~~~~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGei 81 (264)
||||||+||||||++. .+...+.+.+..... ..+++|++||||++|..+.+.. ++.+|||||++.+.|||||||
T Consensus 1 MrkpiIagNWKm~~n~~~~~a~~l~~~~~~~~~-~~~v~v~v~Pp~~~L~~v~~~~---~i~v~AQn~~~~~~GA~TGev 76 (223)
T PRK04302 1 MKKPIIIINFKTYEEATGKRALEIAKAAEKVAK-ETGVTIAVAPQALDLYRVAEEV---EIPVYAQHVDAVGPGAHTGHI 76 (223)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEEEECCHHHHHHHHHHC---CCEEEECCCCCCCCCCCCCCC
T ss_conf 999899998987867437899999999986065-5798899979999999999736---980995438898786862633
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 06777540731001042000221357999999999999833474799816552033349800011100222100000013
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
|+.||+|+||+||||||||||.+|+|+|+.| ++++++||+||+|+||.++.+... ..+
T Consensus 77 S~~mL~d~G~~~vIlGHSERR~~~~E~~~~v----~~a~~~gl~~I~Cv~~~~~~~~~~------------------~l~ 134 (223)
T PRK04302 77 LPEAVKDAGAVGTLLNHSERRLRLADIEAAV----ERAKELGLESVVCTNNPETSAAAA------------------ALG 134 (223)
T ss_pred CHHHHHHCCCCEEEECCCHHHHHCCCHHHHH----HHHHHCCCEEEEECCCHHHHHHHH------------------HCC
T ss_conf 0999998599999956533100032279999----999986994899727399888998------------------658
Q ss_pred CCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 41132051353045576431124554467999999633224164308862778987899996689896889743435889
Q gi|254780197|r 162 VPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 162 ~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
+.+|||||+||||||++|++++.+.++..+|.. . +.++++||||||||+++|..+++..+++||+|||||||+++
T Consensus 135 ~~~IAYEPvWAIGTG~~as~~~~e~i~~~~~~~-~----~~~~~i~ILYGGsV~~~n~~~~~~~~~vDG~LVGgAsLkA~ 209 (223)
T PRK04302 135 PDAVAVEPPELIGTGIPVSKAKPEVVTGTVEAV-R----KVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAK 209 (223)
T ss_pred CCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHH-H----HHCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEECC
T ss_conf 998998888984489876625899999999999-9----64799758997846878899997468998589762566687
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780197|r 242 LFLKIVEIVER 252 (264)
Q Consensus 242 ~F~~Ii~~~~~ 252 (264)
+..++++..-+
T Consensus 210 Dp~~~l~~l~~ 220 (223)
T PRK04302 210 DPEAALRDLVS 220 (223)
T ss_pred CHHHHHHHHHH
T ss_conf 99999999997
No 9
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=100.00 E-value=0 Score=479.49 Aligned_cols=234 Identities=28% Similarity=0.358 Sum_probs=215.7
Q ss_pred EEEEEEC-CCCCHHHHHHHHHHHHH-CCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 6998646-56899999999999952-223457711999689655999999732576310222012223334332120677
Q gi|254780197|r 8 LVVGNWK-MHGLRLSLERIQKIVEG-IRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANM 85 (264)
Q Consensus 8 iIigNWK-MN~~~~~~~~~~~~~~~-~~~~~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~m 85 (264)
+|++||| .|++..........+.. .......+.|+|+|||.||..+.+..+++.|.++||||+....|+|||+|||+|
T Consensus 1 ~V~~N~Ktynes~g~r~~~~a~i~~G~vA~~~g~~v~vAP~~~dL~~~~~~v~G~~I~V~AQh~d~~~~GahTG~i~Aem 80 (244)
T TIGR00419 1 LVIGNWKTYNESVGQRALEVAKIAEGEVASEAGVEVAVAPPFVDLPMVKDEVEGSEIPVYAQHVDAVKSGAHTGEISAEM 80 (244)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHH
T ss_conf 95657752478865389999876257656502405774275013779998507997522445410117876522368999
Q ss_pred HHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHH-------CCC
Q ss_conf 7540731001042000221357999999999999833474799816552033349800011100222100-------000
Q gi|254780197|r 86 LADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP-------SEF 158 (264)
Q Consensus 86 L~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~-------~~~ 158 (264)
|+|+|++|+||||||||.|+.|+||+|..|+.++++.||+||+|+|||+++||+|+|+++.-+|++.+.. .+.
T Consensus 81 ~~d~Ga~g~linHSErR~~~~laDElIe~~~~~~kelGL~~vvC~GET~~~~EaGkteev~~~~~n~V~~t~aAaADkik 160 (244)
T TIGR00419 81 LKDLGAKGTLINHSERRSLLKLADELIEKKVARLKELGLTSVVCTGETLEEREAGKTEEVAARTINNVLTTAAAAADKIK 160 (244)
T ss_pred HHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98459972887652666688765788899999998648827997457633210574245555456447655889887744
Q ss_pred CCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC-HHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 013411320513530455764311245544679999996332-2416430886277898789999668989688974343
Q gi|254780197|r 159 KSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFP-EEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 159 ~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~-~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
++.+.+|||||+|+||||+++||.+.|.||..||+|+++... +.+++++|||||||+..|+.+++-+|++||+||||||
T Consensus 161 Dl~p~~vAvEPpelIGtGipvS~A~pe~V~~~vrD~l~~na~~evn~~V~vlcGagi~~~~d~~~A~~lg~eGvLlasg~ 240 (244)
T TIGR00419 161 DLEPDVVAVEPPELIGTGIPVSKAQPEVVHGSVRDHLKKNAVKEVNESVRVLCGAGITTGEDAELAAQLGAEGVLLASGV 240 (244)
T ss_pred CCCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCEE
T ss_conf 15897899827503227878988756777655788886304501266407887686165889999736997768872556
Q ss_pred CCHH
Q ss_conf 5889
Q gi|254780197|r 238 LQHE 241 (264)
Q Consensus 238 l~~~ 241 (264)
|+||
T Consensus 241 ~KA~ 244 (244)
T TIGR00419 241 LKAE 244 (244)
T ss_pred ECCC
T ss_conf 4379
No 10
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.88 E-value=0.044 Score=33.78 Aligned_cols=145 Identities=18% Similarity=0.243 Sum_probs=90.9
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
.+.+.+.|++++. =|.| +...+.+-++...++|+.+=+.+.=. ...+ .++..+..++ ..
T Consensus 78 i~~~~~aGad~i~-~H~E-------a~~~~~~~i~~ik~~g~k~GlalnP~-------T~~~----~l~~~l~~~D--~V 136 (223)
T PRK08745 78 VPDFADAGATTIS-FHPE-------ASRHVHRTIQLIKSHGCQAGLVLNPA-------TPVD----ILDWVLPELD--LV 136 (223)
T ss_pred HHHHHHCCCCEEE-EEEC-------CCCCHHHHHHHHHHCCCCEEEEECCC-------CCHH----HHHHHHHHCC--EE
T ss_conf 9999973997899-9606-------44299999999998398446774699-------9879----9999886479--89
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH
Q ss_conf 11320513530455764311245544679999996332241643088627789878999966898968897434358899
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~ 242 (264)
++..-+|-. .|+. .+.++...|+. +++.......++.|-=-|+||.+|++.+.. .+.|.+-.|+|=.+.++
T Consensus 137 liMtV~PGf---~GQ~----f~~~~l~KI~~-l~~~~~~~~~~~~I~VDGGI~~~ti~~l~~-aGad~~V~GSaiF~~~d 207 (223)
T PRK08745 137 LVMSVNPGF---GGQA----FIPSALDKLRA-IRKKIDALGKPIRLEIDGGVKADNIGAIAA-AGADTFVAGSAIFNAPD 207 (223)
T ss_pred EEEEECCCC---CCCC----CCHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHHHCCCC
T ss_conf 998756998---8754----56889999999-999998649994599978879899999998-69999997417757999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999984
Q gi|254780197|r 243 FLKIVEIVERVYVDS 257 (264)
Q Consensus 243 F~~Ii~~~~~~~~~~ 257 (264)
+.+.|+..+....++
T Consensus 208 ~~~~i~~lr~~~~~~ 222 (223)
T PRK08745 208 YAQVIAQMRAAVAAV 222 (223)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999865
No 11
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.85 E-value=0.17 Score=30.07 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=84.0
Q ss_pred HHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99732576310222012223334332120677754073100104200022135799999999999983347479981655
Q gi|254780197|r 54 SRLCKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGET 133 (264)
Q Consensus 54 ~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~ 133 (264)
.+..+.+++-++.|-......-+ .+..+.++++.|++++++....+.. ..+..+.+++ ++... .++.++..+.-+
T Consensus 50 ~~~~~~t~~P~~v~~~~~~~~~~--~~~~~~~~~~~g~d~v~i~~~~~~~-~~~~~~~~~~-~~~~~-~~~~vi~~~~~~ 124 (200)
T cd04722 50 KEVAAETDLPLGVQLAINDAAAA--VDIAAAAARAAGADGVEIHGAVGYL-AREDLELIRE-LREAV-PDVKVVVKLSPT 124 (200)
T ss_pred HHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHCCCCEEEECCCCCCC-CCCHHHHHHH-HHHHC-CCCEEEEECCCC
T ss_conf 99997079987998420566667--7599999998399989978999654-3006899999-99844-896499968999
Q ss_pred CHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCC
Q ss_conf 20333498000111002221000000134113205135304557643112455446799999963322416430886277
Q gi|254780197|r 134 DEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGS 213 (264)
Q Consensus 134 ~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGS 213 (264)
-+... .|.+ ...--.+-+...|--|++....+. .+..++... ...++||+.||.
T Consensus 125 ~~~~~---------~~a~-------~~g~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~ipvi~~gG 178 (200)
T cd04722 125 GELAA---------AAAE-------EAGVDEVGLGNGGGGGGGRDAVPI----ADLLLILAK------RGSKVPVIAGGG 178 (200)
T ss_pred CHHHH---------HHHH-------HCCCCEEEECCCCCCCCCCCCCCH----HHHHHHHHH------HHCCCCEEEECC
T ss_conf 99999---------9999-------809979997087467888766611----689999999------857999899758
Q ss_pred CCH-HHHHHHHCCCCCCEEEECH
Q ss_conf 898-7899996689896889743
Q gi|254780197|r 214 VDV-ANAEDFSLIENIDGLLVGG 235 (264)
Q Consensus 214 V~~-~N~~~l~~~~~iDG~LVG~ 235 (264)
++. +++.+.+.. ..||+.||+
T Consensus 179 i~~~~~~~~~~~~-gAdgv~vGs 200 (200)
T cd04722 179 INDPEDAAEALAL-GADGVIVGS 200 (200)
T ss_pred CCCHHHHHHHHHC-CCCEEEECC
T ss_conf 7999999999985-998898188
No 12
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=95.75 E-value=0.016 Score=36.57 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=38.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 4557643112455446799999963322416430886277898789999668989688974343
Q gi|254780197|r 174 GTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 174 GtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
.||..++++++.++ |+. -.+|||-|..|+++|+.++++. .||+-||..-
T Consensus 182 ~TG~~~~~~~l~~v----k~~---------~~~PvlvGSGvt~~Ni~~~l~~--ADG~IVGS~~ 230 (254)
T pfam03437 182 TTGGEVDLEELKLA----KET---------VPVPVLVGSGVNLENLEELWSI--ADGFIVGTSI 230 (254)
T ss_pred CCCCCCCHHHHHHH----HHH---------CCCCEEEECCCCHHHHHHHHHH--CCEEEEEHHE
T ss_conf 02799999999999----962---------6998899579898899999987--8999984223
No 13
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=95.39 E-value=0.053 Score=33.30 Aligned_cols=66 Identities=27% Similarity=0.422 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHH---------HCCHHHHH
Q ss_conf 455764311245544679999996332241643088627789878999966898968897434---------35889999
Q gi|254780197|r 174 GTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGA---------SLQHELFL 244 (264)
Q Consensus 174 GtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~A---------Sl~~~~F~ 244 (264)
.||..+++++++.+... -++|+|-|-.|+++|+.++++. .||+.||.. -.|++.-.
T Consensus 187 ~TG~~~d~~el~~a~~~-------------~~~pvlvGSGv~~eN~~~~l~~--adG~IvgT~lK~~G~~~n~VD~~Rv~ 251 (263)
T COG0434 187 RTGSPPDLEELKLAKEA-------------VDTPVLVGSGVNPENIEELLKI--ADGVIVGTSLKKGGVTWNPVDLERVR 251 (263)
T ss_pred CCCCCCCHHHHHHHHHC-------------CCCCEEEECCCCHHHHHHHHHH--CCCEEEEEEECCCCEECCCCCHHHHH
T ss_conf 67899998999999862-------------6987897368888899999987--28669978660388636845999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780197|r 245 KIVEIVERVY 254 (264)
Q Consensus 245 ~Ii~~~~~~~ 254 (264)
.+++.++++.
T Consensus 252 ~~v~~a~~~~ 261 (263)
T COG0434 252 RFVEAARRLR 261 (263)
T ss_pred HHHHHHHHHC
T ss_conf 9999998753
No 14
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=94.41 E-value=0.47 Score=27.35 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=85.6
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
.+.+.+.|++++.+ |.|- ...+.+-++...+.|+.+=+.+.= +...+.+ ...+..++ ..
T Consensus 77 i~~~~~~g~d~I~~-H~Ea-------~~~~~~~i~~ik~~g~k~Glalnp-------~T~~~~l----~~~l~~iD--~V 135 (220)
T PRK05581 77 VPDFAKAGADIITF-HVEA-------SEHIHRLLQLIKEAGIKAGLVLNP-------ATPLEYL----EYVLPLLD--LV 135 (220)
T ss_pred HHHHHHCCCCEEEE-CCCC-------CCCHHHHHHHHHHCCCCEEEEECC-------CCCHHHH----HHHHHHHC--EE
T ss_conf 99999739988998-1675-------027999999999749970467669-------9998999----99987415--25
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH
Q ss_conf 11320513530455764311245544679999996332241643088627789878999966898968897434358899
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~ 242 (264)
++..=||-. .|+.=.++-.+ -.+.+|+++.+ ...++.|-=-|+||.+|+..+. ..++|.+-+|+|=...++
T Consensus 136 lvMtV~PGf---~GQ~f~~~~l~-ki~~l~~~~~~----~~~~~~I~VDGGIn~~~i~~l~-~~Gad~~V~GS~iF~~~d 206 (220)
T PRK05581 136 LLMSVNPGF---GGQKFIPEVLE-KIREVRKLIDE----RGLDILIEVDGGVNAENIKECA-EAGADVFVAGSAVFGAPD 206 (220)
T ss_pred EEEEECCCC---CCCCCCHHHHH-HHHHHHHHHHH----CCCCEEEEEECCCCHHHHHHHH-HCCCCEEEECHHHHCCCC
T ss_conf 899865887---87645566999-99999999984----5997559997898989999999-779999997948857999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780197|r 243 FLKIVEIVERV 253 (264)
Q Consensus 243 F~~Ii~~~~~~ 253 (264)
+.+.|+..++.
T Consensus 207 ~~~~i~~lk~~ 217 (220)
T PRK05581 207 YKEAIDELRAE 217 (220)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 15
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.84 E-value=0.61 Score=26.65 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=68.2
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHCCCC----CCCCCCCHHHHHHC
Q ss_conf 0677754073100104200022135799999999999983347-479981655203334980----00111002221000
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL-YPIVCIGETDEEYRSGRT----FEVLQKQLDCSLPS 156 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l-~pIlCiGE~~~e~~~~~~----~~~l~~Ql~~~l~~ 156 (264)
.++.+-+.|++.+++|-.- -++.+.+.+-.+ ..|- .+++++- -|+.... .+.....+...++.
T Consensus 87 ~~~~l~~~Ga~kvvi~s~~-----~~~~~~~~~~~~---~~G~q~iv~slD----~k~~~~~~~~~~~~~~~~~~~~i~~ 154 (234)
T cd04732 87 DIERLLDLGVSRVIIGTAA-----VKNPELVKELLK---EYGGERIVVGLD----AKDGKVATKGWLETSEVSLEELAKR 154 (234)
T ss_pred HHHHHHHCCCCEEEECCCH-----HHCHHHHHHHHH---HCCCCCEEEEEE----EECCCHHCCCCCEEECCCHHHHHHH
T ss_conf 9999986488718971401-----108278999999---829764699999----7512000168640013516999999
Q ss_pred CCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEE
Q ss_conf 000--13411320513530455764311245544679999996332241643088627789-878999966898968897
Q gi|254780197|r 157 EFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLV 233 (264)
Q Consensus 157 ~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LV 233 (264)
..+ ...++ +--+=--||++=++.+.++++. +. .++|++|+|.|+ .+.++.+.+. ++||++|
T Consensus 155 ~~~~g~geii--lt~i~~dGt~~G~d~~ll~~i~----~~---------~~~p~i~~GGv~s~~di~~l~~~-g~~gviv 218 (234)
T cd04732 155 FEELGVKAII--YTDISRDGTLSGPNFELYKELA----AA---------TGIPVIASGGVSSLDDIKALKEL-GVAGVIV 218 (234)
T ss_pred HHHCCCCEEE--EEEECCCCCCCCCCHHHHHHHH----HH---------CCCCEEEEECCCCHHHHHHHHHC-CCCEEEE
T ss_conf 9745864699--8764256653568999999998----65---------79989998189999999999977-9989999
Q ss_pred CHHHCC
Q ss_conf 434358
Q gi|254780197|r 234 GGASLQ 239 (264)
Q Consensus 234 G~ASl~ 239 (264)
|.|=++
T Consensus 219 gsAlh~ 224 (234)
T cd04732 219 GKALYE 224 (234)
T ss_pred EHHHHC
T ss_conf 889877
No 16
>PRK13124 consensus
Probab=93.13 E-value=0.8 Score=25.91 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=63.7
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+++.|++.+||=-- -+-|+++.. ..+.++|+.+|.-|-=|-++| +..+ .....
T Consensus 106 ~~~~~~~Gv~GvIipDL----P~eE~~~~~----~~~~~~gl~~I~lvaPTs~~R------------i~~i----~~~s~ 161 (257)
T PRK13124 106 FALARENGIDGLLIPDL----PLEESGELQ----EICDKYGIYLIPLVAPTSKER------------IKKI----AEQAE 161 (257)
T ss_pred HHHHHHCCCCEEECCCC----CHHHHHHHH----HHHHHCCCCEEEEECCCCHHH------------HHHH----HHCCC
T ss_conf 99999759984777899----979999999----999866873578847996799------------9999----85489
Q ss_pred CEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 113205135304-557-6431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 163 PVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 163 ~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
-.| |= +-.-| ||. .+-+.++.+..+.||+. .++||..|=.+ +++.++.+... .||+-||+|-.+
T Consensus 162 gFi-Y~-vs~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~v~~~~~~--ADGvIVGSaivk 228 (257)
T PRK13124 162 GFV-YC-VSSLGVTGVREEIETDLEEFIRTVKQY---------SNVPVAVGFGISTPEQVQKMKEI--ADGVVVGSALVE 228 (257)
T ss_pred CCE-EE-EECCCCCCCCCCCHHHHHHHHHHHHHC---------CCCCEEEEECCCCHHHHHHHHHH--CCEEEECHHHHH
T ss_conf 838-99-624666787655608899999999861---------79983898446999999999801--999998289999
No 17
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=92.94 E-value=0.85 Score=25.74 Aligned_cols=136 Identities=18% Similarity=0.301 Sum_probs=83.3
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+.+.|++++.+ |.|- ...+.+-++...++|+.+=+.+.=. ...+. +...+..+ ...
T Consensus 73 i~~~~~~g~d~I~~-H~E~-------~~~~~~~i~~ik~~g~~~Glal~p~-------T~~~~----l~~~l~~~--D~v 131 (211)
T cd00429 73 IEAFAKAGADIITF-HAEA-------TDHLHRTIQLIKELGMKAGVALNPG-------TPVEV----LEPYLDEV--DLV 131 (211)
T ss_pred HHHHHHHCCCEEEE-CCCC-------CCCHHHHHHHHHHCCCCCEEEECCC-------CCHHH----HHHHHHHH--CEE
T ss_conf 99999709988998-6432-------2089999999997398723575489-------99899----99999751--522
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH
Q ss_conf 11320513530455764311245544679999996332241643088627789878999966898968897434358899
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~ 242 (264)
++..-||-+ .|+. .++++...|++ +++++.....++.|.--|+||.+|+.++. ..++|.+-+|++-...++
T Consensus 132 liMtV~PGf---~GQ~----f~~~~~~ki~~-l~~~~~~~~~~~~I~vDGGI~~~~i~~l~-~~Gad~~V~GS~iF~~~d 202 (211)
T cd00429 132 LVMSVNPGF---GGQK----FIPEVLEKIRK-LRELIPENNLNLLIEVDGGINLETIPLLA-EAGADVLVAGSALFGSDD 202 (211)
T ss_pred EEEEECCCC---CCCC----CCHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHH-HCCCCEEEECHHHHCCCC
T ss_conf 798746887---8875----45679999999-99999864998599996785989999999-859999997937758999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780197|r 243 FLKIVE 248 (264)
Q Consensus 243 F~~Ii~ 248 (264)
..+.++
T Consensus 203 ~~~~i~ 208 (211)
T cd00429 203 YAEAIK 208 (211)
T ss_pred HHHHHH
T ss_conf 999999
No 18
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=92.29 E-value=1 Score=25.21 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=74.9
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+.+.|++++ .=|.| +...+.+-++...++|+.+=+.+--. ...+ ++...+..++ -.
T Consensus 73 i~~~~~~g~d~i-~~H~E-------~~~~~~~~i~~ik~~g~k~GlAlnP~-------T~~~----~l~~~l~~iD--~V 131 (201)
T pfam00834 73 IPDFAEAGADII-SFHAE-------ASDHPHRTIQLIKEAGAKAGLVLNPA-------TPLD----AIEYLLDDLD--LV 131 (201)
T ss_pred HHHHHHCCCCEE-EECHH-------HHHCHHHHHHHHHHCCCEEEEEECCC-------CCCH----HHHHHHHHCC--EE
T ss_conf 999987399889-97544-------41379999999986497268885699-------8602----8887674279--89
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 113205135304557643112455446799999963322416430886277898789999668989688974343
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
++..=||-. .|+.= +..+...||+ +++.+.+...++.|-=-|+||.+|+.++.. .++|.+-.|+|=
T Consensus 132 LvMtV~PGf---~GQ~f----~~~~l~KI~~-lr~~~~~~~~~~~I~vDGGIn~~ti~~l~~-~Gad~~V~GSai 197 (201)
T pfam00834 132 LLMSVNPGF---GGQSF----IPSVLPKIRK-VRKMIDEGGLDTLIEVDGGVNLDNIPQIAE-AGADVLVAGSAV 197 (201)
T ss_pred EEEEECCCC---CCCCC----CHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHH-CCCCEEEECCEE
T ss_conf 998866898---87645----6779999999-999998269980799989888999999998-799999978002
No 19
>PRK13136 consensus
Probab=91.93 E-value=1.1 Score=24.95 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCH-HHHCCCCCCCCCCCHHHHHHCC
Q ss_conf 212067775407310010420002213579999999999998334747998165520-3334980001110022210000
Q gi|254780197|r 79 GDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDE-EYRSGRTFEVLQKQLDCSLPSE 157 (264)
Q Consensus 79 GeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~-e~~~~~~~~~l~~Ql~~~l~~~ 157 (264)
|+--...+++.|++.+|+=--= +.|+++... .+.++|+.+|.+|--+-. +| +..+.+.
T Consensus 104 G~~f~~~~~~~GvdGlIipDLP----~eE~~~~~~----~~~~~~i~~I~liaPtt~~eR------------i~~i~~~- 162 (253)
T PRK13136 104 GDKIYQQMKSAGVDGCLVVDLP----VEEAAPHLT----ACKTAKIAPILLISPSTTQER------------LKKINEH- 162 (253)
T ss_pred HHHHHHHHHHCCCCCEECCCCC----HHHHHHHHH----HHHHCCCCCEEEECCCCCHHH------------HHHHHHC-
T ss_conf 9999999997498720067899----777699999----999758871255268998899------------9999960-
Q ss_pred CCCCCCEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEEC
Q ss_conf 00134113205135304-557-6431124554467999999633224164308862778-98789999668989688974
Q gi|254780197|r 158 FKSSVPVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVG 234 (264)
Q Consensus 158 ~~~~~~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG 234 (264)
.+- .| |=- ---| ||. ..-++++.+..+.||+. .++||.-|=.+ +++-++.+.+. .||+.||
T Consensus 163 --a~g-Fi-Y~v-s~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~~--ADGvIVG 226 (253)
T PRK13136 163 --GEG-ML-YYV-CRPGTTGVRATLPENFPAKMNQIKSM---------TSLPIVTGFGIANRKMAAQALQY--ADGFVIG 226 (253)
T ss_pred --CCC-EE-EEE-ECCCCCCCCCCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCHHHHHHHHHH--CCEEEEC
T ss_conf --898-19-998-55523687644638899999999972---------69986997154999999999822--9999985
Q ss_pred HHH
Q ss_conf 343
Q gi|254780197|r 235 GAS 237 (264)
Q Consensus 235 ~AS 237 (264)
+|=
T Consensus 227 Sai 229 (253)
T PRK13136 227 SLF 229 (253)
T ss_pred HHH
T ss_conf 899
No 20
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=91.92 E-value=0.11 Score=31.28 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=46.8
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 513530455764311245544679999996332241643088627789878999966898968897434358
Q gi|254780197|r 168 EPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 168 EPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
=||-|.||-+=++.+-++.+...+ +-||.-||.|.+.-.-|++..=.++|+|||+|=++
T Consensus 169 LdI~sVGt~~G~n~ell~~~l~l~-------------e~PV~~GGGi~g~EdlEl~~~mGv~avLvatA~Hk 227 (230)
T TIGR00734 169 LDISSVGTSKGVNLELLKKVLELS-------------ERPVILGGGIKGVEDLELLKEMGVSAVLVATAVHK 227 (230)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHH-------------CCCEEECCCCCCCCHHHHHHHCCCCEEEEEEEECC
T ss_conf 336330567787888999886442-------------48714068736751078888568765755321004
No 21
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=90.62 E-value=0.46 Score=27.41 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=72.3
Q ss_pred CCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCC-CCCCHHHH
Q ss_conf 34332120677754073100104200022135799999999999983347479981655203334980001-11002221
Q gi|254780197|r 75 GPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEV-LQKQLDCS 153 (264)
Q Consensus 75 GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~-l~~Ql~~~ 153 (264)
|-.+..=.+..+-+.|++.++||- + .+ ++ ..+.+.+.. -..=.+++.+- -+. ++.... ........
T Consensus 85 GGIrs~~~~~~~l~~Gadkvvigs-~---~~-~~-~~~~~~~~~--~g~~~ivvslD----~k~-~~~~~~~~~~~~~~~ 151 (233)
T cd04723 85 GGIRSLENAQEWLKRGASRVIVGT-E---TL-PS-DDDEDRLAA--LGEQRLVLSLD----FRG-GQLLKPTDFIGPEEL 151 (233)
T ss_pred CCCCCHHHHHHHHHCCCCEEECCC-H---HC-CC-HHHHHHHHH--HCCCCEEEEEE----EEC-CCCCCCCCCCCHHHH
T ss_conf 022769999999860720152451-0---04-99-899999999--78999899999----989-978724643489999
Q ss_pred HHCCCC-CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEE
Q ss_conf 000000-1341132051353045576431124554467999999633224164308862778-98789999668989688
Q gi|254780197|r 154 LPSEFK-SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGL 231 (264)
Q Consensus 154 l~~~~~-~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~ 231 (264)
+..... ...++ +--+=.-||++=++.+.++++.+. .++|++|+|.| +.+..+.+.+ -++||+
T Consensus 152 ~~~~~~~~~eii--~t~Id~dGt~~G~d~~l~~~i~~~-------------~~~pvi~sGGv~s~~di~~l~~-~g~~gv 215 (233)
T cd04723 152 LRRLAKWPEELI--VLDIDRVGSGQGPDLELLERLAAR-------------ADIPVIAAGGVRSVEDLELLKK-LGASGA 215 (233)
T ss_pred HHHHHHHCCEEE--EEEECCCCCCCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHH-CCCCEE
T ss_conf 999996589599--986434465677799999999986-------------8998999889999999999997-899899
Q ss_pred EECHHHCCH
Q ss_conf 974343588
Q gi|254780197|r 232 LVGGASLQH 240 (264)
Q Consensus 232 LVG~ASl~~ 240 (264)
+||+|-++-
T Consensus 216 ivg~alh~g 224 (233)
T cd04723 216 LVASALHDG 224 (233)
T ss_pred EEEHHHHCC
T ss_conf 986397789
No 22
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.46 E-value=0.71 Score=26.21 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=35.6
Q ss_pred CEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC-CHHHHHHH
Q ss_conf 308862778-987899996689896889743435-88999999
Q gi|254780197|r 206 MRILYGGSV-DVANAEDFSLIENIDGLLVGGASL-QHELFLKI 246 (264)
Q Consensus 206 i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl-~~~~F~~I 246 (264)
+||+.-|+| +++.+.+.++.-.+||+.|||+++ +|.-|.+|
T Consensus 199 ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 199 IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHH
T ss_conf 7598579949999999999841898799743531695575533
No 23
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=90.13 E-value=0.69 Score=26.30 Aligned_cols=130 Identities=20% Similarity=0.222 Sum_probs=68.3
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHCCC-----CCCCCCCCHHHHHH
Q ss_conf 0677754073100104200022135799999999999983347-47998165520333498-----00011100222100
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL-YPIVCIGETDEEYRSGR-----TFEVLQKQLDCSLP 155 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l-~pIlCiGE~~~e~~~~~-----~~~~l~~Ql~~~l~ 155 (264)
.+..+-+.|++.+++|-+= -++-+.+.+- +...|- .+++++. -|..+. +.+...-.+...++
T Consensus 87 ~~~~~l~~Ga~kvvigs~~-----~~~~~~~~~~---~~~~g~q~iv~siD----~k~~~~v~~~~~~~~~~~~~~~~i~ 154 (229)
T pfam00977 87 DAERLLSAGADKVIIGTAA-----VKNPELIKEA---AEKFGSQCIVVAID----AKRDGKVAINGWREETGIDAVEWAK 154 (229)
T ss_pred HHHHHHHCCCCEEEECCCH-----HHCHHHHHHH---HHHCCCCCEEEEEE----ECCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 9999997699899958604-----3093789999---99809864799998----7145179980643356744334456
Q ss_pred CCCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEE
Q ss_conf 0000--1341132051353045576431124554467999999633224164308862778-987899996689896889
Q gi|254780197|r 156 SEFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLL 232 (264)
Q Consensus 156 ~~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~L 232 (264)
...+ ... |=+--+=.-||+.=++.+.++++ ++. .++|++++|.| +.+...++.+ .++||++
T Consensus 155 ~~~~~g~~e--ii~tdi~~dGt~~G~d~~l~~~i----~~~---------~~~pii~~GGv~~~~di~~l~~-~g~~gvi 218 (229)
T pfam00977 155 KLEELGAGE--ILLTDIDRDGTLSGPDLELTREL----AEA---------VNIPVIASGGVGSLEDLKELFS-EGVDGVI 218 (229)
T ss_pred HHHHCCCCE--EEEEEECCCCCCCCCCHHHHHHH----HHH---------CCCCEEEECCCCCHHHHHHHHH-CCCCEEE
T ss_conf 776516750--68877504275666899999999----976---------8998999858999999999998-7998999
Q ss_pred ECHHHCC
Q ss_conf 7434358
Q gi|254780197|r 233 VGGASLQ 239 (264)
Q Consensus 233 VG~ASl~ 239 (264)
||+|-++
T Consensus 219 vg~al~~ 225 (229)
T pfam00977 219 AGSALHE 225 (229)
T ss_pred EHHHHHC
T ss_conf 8578668
No 24
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=89.66 E-value=1.8 Score=23.64 Aligned_cols=179 Identities=13% Similarity=0.149 Sum_probs=94.0
Q ss_pred EECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHH--H
Q ss_conf 96896559999997325763102220122233343321206777540731001042000221357999999999999--8
Q gi|254780197|r 43 ICPPATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSA--C 120 (264)
Q Consensus 43 i~Pp~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~a--l 120 (264)
+.|.+++=..+.+.++. .+.+ |+|---.-|. --...+.+.|++++ .=|.|.-.+..++-+.|++.-..+ .
T Consensus 51 FVPNitfg~~~v~~l~~-~~~~---DvHLMV~~P~---~~i~~~~~aGad~i-t~H~Ea~~~~~~~i~~i~~~~~~~~~~ 122 (235)
T PRK08091 51 FSPQFTVGPWAVGQFPQ-TFIK---DVHLMVADQW---TVAKACVKAGAHCI-TLQAEGDIHLHHTLSWLGQQTVPVIGG 122 (235)
T ss_pred CCCCCCCCHHHHHHHCC-CCCC---CEEEEECCHH---HHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCHHHHH
T ss_conf 67843228999997374-9997---2664338889---99999997599899-975455558899999999834202222
Q ss_pred HCCCC--EEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 33474--7998165520333498000111002221000000134113205135304557643112455446799999963
Q gi|254780197|r 121 NAGLY--PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDR 198 (264)
Q Consensus 121 ~~~l~--pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~ 198 (264)
+.++. .-++-+- ..+ ++...|..++ -.++..-||-. .|+.--++-.+++ +.+|+.+.+
T Consensus 123 ~~~~~~GlAlnP~T---------pve----~l~~~L~~vD--~VLvMtV~PGf---gGQ~fi~~~l~KI-~~l~~~~~~- 182 (235)
T PRK08091 123 EMPVLRGISLCPAT---------PLD----VLIPYLSDVD--VIQLLTLDPRY---GSKMRSSDLHERV-AQLLCLLGD- 182 (235)
T ss_pred HCCCCCEEEECCCC---------CHH----HHHHHHHHCC--EEEEEEECCCC---CCCCCCHHHHHHH-HHHHHHHHH-
T ss_conf 20750138979999---------889----9999870539--99998766898---8886787899999-999999996-
Q ss_pred CCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHHHHH
Q ss_conf 3224164308862778987899996689896889743435889999999999999
Q gi|254780197|r 199 FPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIVERV 253 (264)
Q Consensus 199 ~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~~~~ 253 (264)
...+..|-=-|+||.+|+..+. ..+.|-+-.|+|-...++..+-|+..+.+
T Consensus 183 ---~~~~~~I~VDGGI~~~ti~~~~-~aGad~~V~GS~iF~~~d~~e~i~~lk~l 233 (235)
T PRK08091 183 ---KREGKLIVIDGSMTQDQLPSLI-AQGIDWVVSGSALFSDDRLVENLRSWKAM 233 (235)
T ss_pred ---CCCCCEEEEECCCCHHHHHHHH-HCCCCEEEECHHHCCCCCHHHHHHHHHHH
T ss_conf ---4999159984898988899999-83999999782433799999999999985
No 25
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=89.56 E-value=0.63 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 4308862778-9878999966898968897434358
Q gi|254780197|r 205 KMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 205 ~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
++||++-|-| +++.+.+.+...++||+.|||+.+.
T Consensus 194 ~iPvi~NGdI~s~~d~~~~~~~tg~dgvMiGRgal~ 229 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALN 229 (312)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHH
T ss_conf 998997079599999999987148999996585530
No 26
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.54 E-value=0.6 Score=26.66 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=72.0
Q ss_pred CCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHCCCCCCC---CCCCH
Q ss_conf 343321206777540731001042000221357999999999999833474-79981655203334980001---11002
Q gi|254780197|r 75 GPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDEEYRSGRTFEV---LQKQL 150 (264)
Q Consensus 75 GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~e~~~~~~~~~---l~~Ql 150 (264)
|--.-.=.+..+-+.|++.+++|-.= -++.+.+.+ + +...|=. +++|+-=... ..+.+.-+ -+++.
T Consensus 78 GGIrs~~~~~~~l~~GadkVvigs~~-----~~n~~~~~~-~--~~~~Gsq~Iv~siD~k~~--~~~~~~v~~~~~~~~~ 147 (243)
T cd04731 78 GGIRSLEDARRLLRAGADKVSINSAA-----VENPELIRE-I--AKRFGSQCVVVSIDAKRR--GDGGYEVYTHGGRKPT 147 (243)
T ss_pred EEEEEHHHHHHHHHCCCCEEEECCCC-----CCCCCHHHH-H--HHHCCCCCEEEEEEEEEC--CCCCEEEEECCCCCCC
T ss_conf 50664799999997799789989844-----237714357-8--875699309999997653--7896289846984412
Q ss_pred H----HHHHCCCCC--CCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHH
Q ss_conf 2----210000001--341132051353045576431124554467999999633224164308862778-987899996
Q gi|254780197|r 151 D----CSLPSEFKS--SVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFS 223 (264)
Q Consensus 151 ~----~~l~~~~~~--~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~ 223 (264)
. ..++..... .. |-|--|=-=||+.=++.+-++++ ++. .++||+|.|.| +.+.+.+++
T Consensus 148 ~~~~~~~i~~~~~~G~ge--il~tdI~~DGt~~G~d~~l~~~i----~~~---------~~~piI~sGGi~~~~di~~~l 212 (243)
T cd04731 148 GLDAVEWAKEVEELGAGE--ILLTSMDRDGTKKGYDLELIRAV----SSA---------VNIPVIASGGAGKPEHFVEAF 212 (243)
T ss_pred HHHHHHHHHHHHHCCCCE--EEEEEECCCCCCCCCCHHHHHHH----HHH---------CCCCEEEECCCCCHHHHHHHH
T ss_conf 678999999998469878--99987257685665799999999----986---------899999988999999999999
Q ss_pred CCCCCCEEEECHHHCC
Q ss_conf 6898968897434358
Q gi|254780197|r 224 LIENIDGLLVGGASLQ 239 (264)
Q Consensus 224 ~~~~iDG~LVG~ASl~ 239 (264)
+...+||+.+|.|-..
T Consensus 213 ~~~~~~gv~~g~~~~~ 228 (243)
T cd04731 213 EEGGADAALAASIFHF 228 (243)
T ss_pred HHCCCEEEEEHHHHHC
T ss_conf 8789829988227676
No 27
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=89.43 E-value=1.9 Score=23.53 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=88.6
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+.+.|++++ .=|.| +.+.+.+-++...++|+.+=+.+.=. ...+. ++..+..+ ...
T Consensus 74 i~~~~~aGad~I-~~H~E-------a~~~~~~~i~~Ik~~g~k~GlalnP~-------T~~~~----l~~~l~~~--D~V 132 (220)
T PRK08883 74 IPDFAKAGASMI-TFHVE-------ASEHVDRTLQLIKEHGCQAGVVLNPA-------TPLAH----LEYIMDKV--DLI 132 (220)
T ss_pred HHHHHHCCCCEE-EECCC-------CCCCHHHHHHHHHHCCCCEEEEECCC-------CCHHH----HHHHHHHC--CEE
T ss_conf 999997599889-98577-------65499999999998599668884799-------98799----99999746--979
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH
Q ss_conf 11320513530455764311245544679999996332241643088627789878999966898968897434358899
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~ 242 (264)
++..-+|=.+ |+.--|+-++++ +.+|+.+ .....++.|-=-|.||.+|+.++. ..++|.+-.|+|=...++
T Consensus 133 LvMtV~PGf~---GQ~f~~~~l~Ki-~~l~~~~----~~~~~~~~I~VDGGI~~~ti~~l~-~aGad~~V~GS~iF~~~d 203 (220)
T PRK08883 133 LLMSVNPGFG---GQSFIPHTLDKL-RAVRKMI----DASGRDIRLEIDGGVKVDNIREIA-EAGADMFVAGSAIFGQPD 203 (220)
T ss_pred EEEEECCCCC---CCCCCHHHHHHH-HHHHHHH----HHCCCCCEEEEECCCCHHHHHHHH-HCCCCEEEECHHHHCCCC
T ss_conf 9987458988---754557799999-9999988----744998079998987899999999-879999996826748999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999998
Q gi|254780197|r 243 FLKIVEIVERVYVD 256 (264)
Q Consensus 243 F~~Ii~~~~~~~~~ 256 (264)
..+.|+..+....+
T Consensus 204 ~~~~i~~lr~~~~~ 217 (220)
T PRK08883 204 YKAVIDEMRAELAK 217 (220)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 28
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=89.38 E-value=0.4 Score=27.77 Aligned_cols=61 Identities=26% Similarity=0.278 Sum_probs=46.4
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 51353045576431124554467999999633224164308862778987899996689896889743435889
Q gi|254780197|r 168 EPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 168 EPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
=|+-|.||-.-++++-+..+... ..-|++-||.|..----+++....|+|+|||.|=++-.
T Consensus 157 LDi~aVGt~~G~~~E~l~~~~~~-------------s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~ 217 (229)
T COG1411 157 LDIGAVGTKSGPDYELLTKVLEL-------------SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGV 217 (229)
T ss_pred EECCCCCCCCCCCHHHHHHHHHH-------------CCCCEEECCCCCCHHHHHHHHCCCCCEEEEHHHHHCCC
T ss_conf 97554334669999999999873-------------13753444875857778998617985465433565276
No 29
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=89.07 E-value=0.64 Score=26.49 Aligned_cols=145 Identities=23% Similarity=0.408 Sum_probs=78.7
Q ss_pred CCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCC-CCHHHHHHHHHHHHHCCCCEEEE--CCCCCHHHHCCCCCCCCCCCH
Q ss_conf 334332120677754073100104200022135-79999999999998334747998--165520333498000111002
Q gi|254780197|r 74 YGPYTGDISANMLADCGANFVILGHSERRIGHR-EDSYVVQSKVKSACNAGLYPIVC--IGETDEEYRSGRTFEVLQKQL 150 (264)
Q Consensus 74 ~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~-E~d~~I~~K~~~al~~~l~pIlC--iGE~~~e~~~~~~~~~l~~Ql 150 (264)
.++||-|| +...|=+|.||= -| |- -|=..|..++++.-.+.-.||+= +|++ ..+|+=|
T Consensus 21 a~~YaaEi----~A~AGfDWLL~D-gE----HAPnDv~~~l~QLQa~A~y~~~PvVRP~~~~~----------~lIK~lL 81 (249)
T TIGR02311 21 ADPYAAEI----VAGAGFDWLLID-GE----HAPNDVRTLLSQLQALASYPSSPVVRPAIGDP----------VLIKQLL 81 (249)
T ss_pred CCHHHHHH----HHCCCCCEEEEC-CC----CCCHHHHHHHHHHCCCCCCCCCCEEECCCCCC----------EEEEHHH
T ss_conf 77124465----331476311014-76----58146899998710225679997343677882----------0210132
Q ss_pred HHHHH-----CCC---CCCCCE--EEECHHHHH-CCCCC---CC-----CHHHHHH----HHHHHHHHHHHCCHHHCCCE
Q ss_conf 22100-----000---013411--320513530-45576---43-----1124554----46799999963322416430
Q gi|254780197|r 151 DCSLP-----SEF---KSSVPV--IAYEPIWAI-GTGRV---PA-----VVDLEKI----HSFVRRILLDRFPEEGQKMR 207 (264)
Q Consensus 151 ~~~l~-----~~~---~~~~~i--IAYEPvWAI-GtG~~---a~-----~~~i~~~----~~~Ir~~l~~~~~~~~~~i~ 207 (264)
+.+.. -+. +.+..| +=|=| --| |-|-. || |+|++.. |-.+.=.-
T Consensus 82 DIGAQTLLvPmi~~aeqA~~~V~A~rYPP-~GiRGVGSALARASrwNrIp~Ylq~AdeeiClLlQVEt------------ 148 (249)
T TIGR02311 82 DIGAQTLLVPMIETAEQAEAAVKATRYPP-KGIRGVGSALARASRWNRIPDYLQQADEEICLLLQVET------------ 148 (249)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHCCCHHHHHCCHHHHEEHHHHHHH------------
T ss_conf 23456643103037789999998506951-95134007877632217612576052132023232657------------
Q ss_pred EEECCCCCHHHHHHHHCCCCCCEEEECHHHCC-----------HHHHHHHHHHHHHHHH
Q ss_conf 88627789878999966898968897434358-----------8999999999999999
Q gi|254780197|r 208 ILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-----------HELFLKIVEIVERVYV 255 (264)
Q Consensus 208 ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~-----------~~~F~~Ii~~~~~~~~ 255 (264)
----+|.++|++.+.|||+|||=|=|. ||==..|-++++++..
T Consensus 149 -----r~al~NL~~Ia~VeGVDGVFiGPADLaasmGH~GnPsHPEV~~AI~~Ai~~i~a 202 (249)
T TIGR02311 149 -----REALENLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQDAIDDAIERIKA 202 (249)
T ss_pred -----HHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -----998862157750178662475712443401568886961589999999999985
No 30
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.82 E-value=0.77 Score=26.02 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=65.1
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHCCCC-----CCCCCCCHHHHHH
Q ss_conf 067775407310010420002213579999999999998334-7479981655203334980-----0011100222100
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG-LYPIVCIGETDEEYRSGRT-----FEVLQKQLDCSLP 155 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~-l~pIlCiGE~~~e~~~~~~-----~~~l~~Ql~~~l~ 155 (264)
.++.+-+.|++.+++|-.- -++-+.+.+ + +...| =..++++- -|. ++. .+.....+...++
T Consensus 89 ~i~~~l~~Ga~kvvigs~~-----~~~~~~~~~-i--~~~~G~~~ivvsiD----~k~-~~v~~~gw~~~~~~~~~e~~~ 155 (240)
T PRK13585 89 DAASLLDLGVDRVILGTAA-----IENPELVRE-L--SDEFGSERVMVSLD----AKD-GEVVIEGWTESTGKDPVEWAQ 155 (240)
T ss_pred HHHHHHHCCCCEEEECCCC-----HHCCHHHHH-H--HHHHCCCEEEEEEE----EEC-CCCCCCCCCCCCCCCHHHHHH
T ss_conf 9999997699899939811-----318428899-9--98739721799999----306-502324765678863557778
Q ss_pred CCCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEE
Q ss_conf 0000--13411320513530455764311245544679999996332241643088627789-87899996689896889
Q gi|254780197|r 156 SEFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLL 232 (264)
Q Consensus 156 ~~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~L 232 (264)
.... ... |=|-=+=-=||++=++.+.++++.+. .++|++++|.|+ .+.++.+.+ .++||++
T Consensus 156 ~~~~~g~~e--ii~tdI~~dGt~~G~d~~~~~~i~~~-------------~~~pviasGGv~s~~di~~l~~-~g~~gvi 219 (240)
T PRK13585 156 RFEELGAGS--ILFTNVDVEGLLQGVNPEPVRELVDS-------------VDIPVIASGGVTSLDDVKALKE-AGAAGVV 219 (240)
T ss_pred HHHHCCCCE--EEEEEECCHHHHCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHH-CCCCEEE
T ss_conf 888638735--89864233223257898999999986-------------8999999889999999999997-8997899
Q ss_pred ECHHHCC
Q ss_conf 7434358
Q gi|254780197|r 233 VGGASLQ 239 (264)
Q Consensus 233 VG~ASl~ 239 (264)
||.|=++
T Consensus 220 vG~Al~~ 226 (240)
T PRK13585 220 VGSALYK 226 (240)
T ss_pred EEHHHHC
T ss_conf 8768767
No 31
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=88.77 E-value=1.2 Score=24.80 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=36.7
Q ss_pred CCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC-HHHHHHHHH
Q ss_conf 64308862778-9878999966898968897434358-899999999
Q gi|254780197|r 204 QKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ-HELFLKIVE 248 (264)
Q Consensus 204 ~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~-~~~F~~Ii~ 248 (264)
-++||++-|-| +++.+.+.+...++||+.|||+++. |=-|.+|-.
T Consensus 193 ~~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwiF~~i~~ 239 (321)
T PRK10415 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHH
T ss_conf 79978965891999999999986299999975665369877999999
No 32
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.50 E-value=2.2 Score=23.13 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=64.8
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+++.|++.+|+=--= +-|+++... .+.++||.+|.-|--+-.+. .++.+.+. .+-
T Consensus 106 ~~~~~~~GvdGvIipDLP----~eE~~~~~~----~~~~~gi~~I~lvaPtt~~~-----------Ri~~i~~~---s~g 163 (256)
T PRK13111 106 AADAAEAGVDGLIIPDLP----PEEAEEFRA----AAKKHGIDLIFLVAPTTTDE-----------RLKKIASH---ASG 163 (256)
T ss_pred HHHHHHCCCCEEEECCCC----HHHHHHHHH----HHHHCCCEEEEEECCCCCHH-----------HHHHHHHH---CCC
T ss_conf 999997599779816999----788899999----99975980899969999889-----------99999962---698
Q ss_pred -C-EEEECHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf -1-13205135304557-6431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 163 -P-VIAYEPIWAIGTGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 163 -~-iIAYEPvWAIGtG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
+ .++.-.+ ||. ...+.++.+..+.||+. .++||+.|=.+ +++-++.+.. ..||+-||+|-.
T Consensus 164 fiY~vs~~Gv----TG~~~~~~~~~~~~i~~ik~~---------t~~Pi~vGFGIs~~e~v~~~~~--~aDGvIVGSaiv 228 (256)
T PRK13111 164 FVYYVSRAGV----TGARSADAADVADLLARLKAH---------TDLPVAVGFGISTPEQAAAIAE--GADGVIVGSALV 228 (256)
T ss_pred EEEEEECCCC----CCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHC--CCCEEEECHHHH
T ss_conf 5999856776----788766628899999999870---------6897588528899999999974--599999868999
Q ss_pred C
Q ss_conf 8
Q gi|254780197|r 239 Q 239 (264)
Q Consensus 239 ~ 239 (264)
+
T Consensus 229 ~ 229 (256)
T PRK13111 229 K 229 (256)
T ss_pred H
T ss_conf 9
No 33
>PRK02747 consensus
Probab=88.13 E-value=2.1 Score=23.33 Aligned_cols=137 Identities=12% Similarity=-0.024 Sum_probs=65.3
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCH--HHHCCCCCCCCC---CCH----H
Q ss_conf 06777540731001042000221357999999999999833474-7998165520--333498000111---002----2
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDE--EYRSGRTFEVLQ---KQL----D 151 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~--e~~~~~~~~~l~---~Ql----~ 151 (264)
.+..+-+.|++.++||-.- -++.+.+.+-. ...|=. +++++.=... ....+.+.-+.. ++. .
T Consensus 88 ~~~~ll~~GadkViigs~a-----~~np~l~~~~~---~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~~~~~~t~~~~~ 159 (257)
T PRK02747 88 DIRKLLLAGADKVSINSAA-----VARPEFVAEAA---DKFGSQCIVVAIDAKRVSPAGENDRWEIFTHGGRKPTGIDAV 159 (257)
T ss_pred HHHHHHHCCCCEEEECHHH-----HHCCHHHHHHH---HHCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCEECCCHHH
T ss_conf 8789987699689834446-----54834777788---755965799999877515767787389998898463430399
Q ss_pred HHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCE
Q ss_conf 2100000013411320513530455764311245544679999996332241643088627789-878999966898968
Q gi|254780197|r 152 CSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDG 230 (264)
Q Consensus 152 ~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG 230 (264)
..+....+..--=|-|--|=-=||.+=++.+.++++.+. -++|+++.|.|. .+...+++....++|
T Consensus 160 ~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~~-------------~~~pvIasGGv~~~~di~~~~~~~~~~a 226 (257)
T PRK02747 160 EFAQKVVSLGAGEILLTSMDRDGTKAGFDLPLTRAIADA-------------VRVPVIASGGVGTLDHLVEGVRDGHATA 226 (257)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHC-------------CCCCEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 999999970998899998835573267886999999860-------------7998999779999999999998389849
Q ss_pred EEECHHHCC
Q ss_conf 897434358
Q gi|254780197|r 231 LLVGGASLQ 239 (264)
Q Consensus 231 ~LVG~ASl~ 239 (264)
+.+|++-..
T Consensus 227 v~~g~~~~~ 235 (257)
T PRK02747 227 VLAASIFHF 235 (257)
T ss_pred EEEHHHHHC
T ss_conf 988326776
No 34
>PRK13132 consensus
Probab=88.06 E-value=2.4 Score=22.95 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+++.|++.+|+=--= +-|+++. ...+.++++.+|..|-=|-++| +..+... .+.
T Consensus 106 ~~~~~~~GvdGlIipDLP----~ee~~~~----~~~~~~~~i~~I~lvaPTs~~R------------~~~i~~~---s~g 162 (246)
T PRK13132 106 VKKAKELGISGLIVPDLP----FEESEEL----IKECEKYNIALIPLISVTSPKR------------AKKILKH---AKG 162 (246)
T ss_pred HHHHHHCCCCEEECCCCC----HHHHHHH----HHHHHHCCCCEEEEECCCCHHH------------HHHHHHC---CCC
T ss_conf 999987699857757999----7898999----9999985997014425797899------------9999954---898
Q ss_pred CEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 113205135304-557-6431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 163 PVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 163 ~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
.| |= +-.-| ||. ....+++.+..+.||+. .++|++.|=.+ +++-++.+.+. .||+-||+|-.
T Consensus 163 fi--Y~-vs~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~v~~~~~~--aDGvIVGSa~v 227 (246)
T PRK13132 163 FI--YA-LGSIGVTGTKSVEEARLKDKVKEIKSF---------TDLPVAVGFGIKNNQDVKRMRKY--ADGVIVGTSIV 227 (246)
T ss_pred CE--EE-EECCCCCCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHHC--CCEEEECHHHH
T ss_conf 27--99-753567777666368899999999962---------89986997798999999999822--99999709999
No 35
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=87.22 E-value=2.6 Score=22.64 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=67.9
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 06777540731001042000221357999999999999833474799816552033349800011100222100000013
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
-...+++.|++.+|+=-- -+.|+++.. ..+.++||.+|.-|--+-.+. .++ ++ ... .+
T Consensus 96 F~~~~~~~Gv~GviipDL----P~ee~~~~~----~~~~~~~i~~I~lvsPtt~~~-------ri~-~i---~~~---s~ 153 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDL----PPEEAEEFR----EAAKEYGLDLIFLVAPTTPDE-------RIK-KI---AEL---AS 153 (242)
T ss_pred HHHHHHHCCCCEEEECCC----CHHHHHHHH----HHHHHCCCEEEEEECCCCCHH-------HHH-HH---HHH---CC
T ss_conf 999999759975870699----957846899----999865983889968988789-------999-99---974---79
Q ss_pred CC--EEEECHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 41--13205135304557-6431124554467999999633224164308862778-98789999668989688974343
Q gi|254780197|r 162 VP--VIAYEPIWAIGTGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 162 ~~--iIAYEPvWAIGtG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
-. .++.-++ ||. .+...++.+..+.||+. .++||+.|=.+ +++-++.+.+. .||+-||+|-
T Consensus 154 gfiY~vs~~Gv----TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~v~~~~~~--aDGvIVGSa~ 218 (242)
T cd04724 154 GFIYYVSRTGV----TGARTELPDDLKELIKRIRKY---------TDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSAL 218 (242)
T ss_pred CEEEEEECCCC----CCCCCCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCHHHHHHHHHH--CCEEEECHHH
T ss_conf 84999857777----787755649999999999871---------68974874387999999999965--9999987899
Q ss_pred C
Q ss_conf 5
Q gi|254780197|r 238 L 238 (264)
Q Consensus 238 l 238 (264)
.
T Consensus 219 V 219 (242)
T cd04724 219 V 219 (242)
T ss_pred H
T ss_conf 9
No 36
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=86.84 E-value=2.8 Score=22.51 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=60.6
Q ss_pred CHHHHHHCCCCCCCCEEEECHHHH---------------HCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCE-EEECC
Q ss_conf 022210000001341132051353---------------04557643112455446799999963322416430-88627
Q gi|254780197|r 149 QLDCSLPSEFKSSVPVIAYEPIWA---------------IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMR-ILYGG 212 (264)
Q Consensus 149 Ql~~~l~~~~~~~~~iIAYEPvWA---------------IGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~-ilYGG 212 (264)
++...++.+...++.++.|.|.|. +.++..|++.++.++...||+. +++ |+|--
T Consensus 165 ~~~~~l~~vp~~~~~~vt~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~----------~i~~if~E~ 234 (287)
T cd01137 165 WAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKE----------KVPAVFVES 234 (287)
T ss_pred HHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC----------CCCEEEEEC
T ss_conf 9999972487435557851741689998679917764412786666999999999999852----------997899858
Q ss_pred CCCHHHHHHHHCCCCCCEE--EE----CHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 7898789999668989688--97----43435889999999999999998
Q gi|254780197|r 213 SVDVANAEDFSLIENIDGL--LV----GGASLQHELFLKIVEIVERVYVD 256 (264)
Q Consensus 213 SV~~~N~~~l~~~~~iDG~--LV----G~ASl~~~~F~~Ii~~~~~~~~~ 256 (264)
++++..++.+.+..++.-. |. |...-..+.|.++.+.--+...+
T Consensus 235 ~~~~k~a~~ia~e~g~~v~~~l~~d~l~~~~~~~~tY~~~m~~N~~~l~~ 284 (287)
T cd01137 235 TVNDRLMKQVAKETGAKIGGQLYTDSLSEKGGPADTYLDMMEHNLDTIVE 284 (287)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99909999999972997146256556788899837599999999999998
No 37
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=86.53 E-value=2.9 Score=22.41 Aligned_cols=175 Identities=22% Similarity=0.243 Sum_probs=92.8
Q ss_pred EECCHHHHHHHHHHHC-CCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9689655999999732-576310222012223334332120677754073100104200022135799999999999983
Q gi|254780197|r 43 ICPPATLIYESSRLCK-TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121 (264)
Q Consensus 43 i~Pp~~~L~~~~~~~~-~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~ 121 (264)
+.|.+++=..+.+.++ .+++.+ |+|---.-+ +--...+.+.|+++. .=|.|.- +....+-++...+
T Consensus 38 FVPN~tfgp~~v~~ir~~t~~p~---DvHLMv~~P---~~~i~~~~~~gad~I-t~H~Ea~------~~~~~~~i~~Ik~ 104 (227)
T PRK09722 38 FVPNLTLSPFFVSQVKKLASKPL---DCHLMVTRP---QDYIAQLADAGADFI-TLHPETI------NGQAFRLIDEIRR 104 (227)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCE---EEEEEECCH---HHHHHHHHHCCCCEE-EECHHHC------CCCHHHHHHHHHH
T ss_conf 07854518659999974489964---789996588---888999985499899-9565650------5659999999998
Q ss_pred CCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 347479981655203334980001110022210000001341132051353045-5764311245544679999996332
Q gi|254780197|r 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGT-GRVPAVVDLEKIHSFVRRILLDRFP 200 (264)
Q Consensus 122 ~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGt-G~~a~~~~i~~~~~~Ir~~l~~~~~ 200 (264)
.|+.+=+.+-= +...+. +...+..+ .-.++..-+| |. |+. .+.++...||+ ++++..
T Consensus 105 ~g~k~GlAlnP-------~Tpi~~----i~~~l~~v--D~VLvMsV~P----Gf~GQ~----Fi~~~l~KI~~-lr~~~~ 162 (227)
T PRK09722 105 AGMKVGLVLNP-------ETPVEA----IKYYIHLA--DKVTVMTVDP----GFAGQP----FIPEMLDKIAE-LKAWRE 162 (227)
T ss_pred CCCCEEEEECC-------CCCHHH----HHHHHHHC--CEEEEEEECC----CCCCCC----CCHHHHHHHHH-HHHHHH
T ss_conf 69972233389-------998668----87667437--9899998889----998765----66889999999-999998
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC--HHHHHHHHHHHHHH
Q ss_conf 241643088627789878999966898968897434358--89999999999999
Q gi|254780197|r 201 EEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ--HELFLKIVEIVERV 253 (264)
Q Consensus 201 ~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~--~~~F~~Ii~~~~~~ 253 (264)
+...++.|---|+||.+|+..+. ..+.|-+-+|++++= +++..+-++..++.
T Consensus 163 ~~~~~~~I~VDGGI~~~~i~~~~-~aGAd~~V~GssaiF~~~~~i~~~~~~l~~~ 216 (227)
T PRK09722 163 REGLEYEIEVDGSCNQKTYEKLM-AAGADVFIVGTSGLFNHAENIDEAWDIMTAQ 216 (227)
T ss_pred HCCCCCEEEEECCCCHHHHHHHH-HCCCCEEEECCHHHCCCCCCHHHHHHHHHHH
T ss_conf 25998269998988899999999-8699999977489748999999999999999
No 38
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=86.50 E-value=0.99 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=34.8
Q ss_pred CCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC-HHHHHHHHHH
Q ss_conf 4308862778-9878999966898968897434358-8999999999
Q gi|254780197|r 205 KMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ-HELFLKIVEI 249 (264)
Q Consensus 205 ~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~-~~~F~~Ii~~ 249 (264)
.|||+==|-| +|+.|+..++....||++|||++|= |=-|.+|-++
T Consensus 208 eiPVigNGDi~~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~~~i~~y 254 (336)
T TIGR00737 208 EIPVIGNGDIFSPEDAKAMLETTGADGVMIGRGALGNPWLFKQIEQY 254 (336)
T ss_pred CCCEECCCCCCCHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHHHH
T ss_conf 53322277424678999998637886898500222787589999999
No 39
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=85.60 E-value=3.2 Score=22.11 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=90.3
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
.+.+.+.|++++.+ |.|--.. ..+-+....++|+.+=+++-=. ...+.+.. .+..-.-.-.
T Consensus 79 i~~~~~~gad~I~~-H~E~~~~-------~~~~i~~ik~~g~k~GlAlnP~-------T~i~~l~~----~l~~~~iD~V 139 (224)
T PTZ00170 79 VDSFAKAGASQFTF-HIEATED-------PKAVARKIRAAGMQVGVALKPK-------TPAEELFP----LIDAGLVDMV 139 (224)
T ss_pred HHHHHHCCCCEEEE-CCCCCCC-------HHHHHHHHHHHCCCEEEEECCC-------CCHHHHHH----HHHHCCCCEE
T ss_conf 99998628967998-5001339-------9999999997147645560799-------98799999----9711445789
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH
Q ss_conf 11320513530455764311245544679999996332241643088627789878999966898968897434358899
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~ 242 (264)
++..-||=++ |+. .+.++...||+. ++.+ .++.|-=-|+||.+|+..+.. .++|.+-+|+|-...++
T Consensus 140 LlMsV~PGf~---GQ~----Fi~~~l~KI~~l-r~~~----~~~~I~VDGGIn~~ti~~l~~-aGad~~V~GSaiF~~~d 206 (224)
T PTZ00170 140 LVMTVEPGFG---GQS----FMHDMMPKVRQL-RQRY----PHLNIQVDGGINPDTIDLAAE-AGANVIVAGTSIFKAND 206 (224)
T ss_pred EEEEECCCCC---CCC----CCHHHHHHHHHH-HHCC----CCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHHHCCCC
T ss_conf 9985569987---621----458899999999-8548----997599958999899999998-69999997858867999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780197|r 243 FLKIVEIVERVYV 255 (264)
Q Consensus 243 F~~Ii~~~~~~~~ 255 (264)
..+-++..++...
T Consensus 207 ~~~~i~~lr~~i~ 219 (224)
T PTZ00170 207 RKESIETLRRSVQ 219 (224)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 40
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=84.52 E-value=3.6 Score=21.81 Aligned_cols=137 Identities=11% Similarity=0.005 Sum_probs=65.2
Q ss_pred CCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHCC-CCCCCCC---CC
Q ss_conf 34332120677754073100104200022135799999999999983347-4799816552033349-8000111---00
Q gi|254780197|r 75 GPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL-YPIVCIGETDEEYRSG-RTFEVLQ---KQ 149 (264)
Q Consensus 75 GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l-~pIlCiGE~~~e~~~~-~~~~~l~---~Q 149 (264)
|--+-.=.+..+-+.|++.++||-.= -++.+.+.+ + +...|= .+++++.= +..+ .+.-++. .+
T Consensus 82 GGIrs~e~~~~ll~~GadkViigS~a-----~~np~~i~~-~--~~~fG~q~Iv~~iD~----~~~~~~~~v~~~~~~~~ 149 (252)
T PRK13597 82 GGVRSLEDARKLLLSGADKVSVNSAA-----VRRPELIRE-L--ADHFGAQAVVLAIDA----RWRGDFPEVHVAGGRVP 149 (252)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECHHH-----HHCCHHHHH-H--HHHCCCCCEEEEEEE----EECCCCCEEEECCCEEE
T ss_conf 77130899999985698779832666-----749378999-9--987499652999988----86189741675387275
Q ss_pred HH----HHHHCCCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHH
Q ss_conf 22----21000000--1341132051353045576431124554467999999633224164308862778-98789999
Q gi|254780197|r 150 LD----CSLPSEFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDF 222 (264)
Q Consensus 150 l~----~~l~~~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l 222 (264)
.. ..+..... ... |-|--|--=||.+=++.+-++++ ++. .++|+++.|.| +.+...++
T Consensus 150 ~~~~~~d~~~~~~~~G~ge--il~tdI~rDGt~~G~d~~l~~~i----~~~---------~~~pvIasGGv~s~~dl~~l 214 (252)
T PRK13597 150 TGLHAVEWAVKGVELGAGE--ILLTSMDRDGTKEGYDLRLTRMV----AEA---------VGVPVIASGGAGRMEHFLEA 214 (252)
T ss_pred CCCCHHHHHHHHHHHCCCE--EEEEEECCCCCCCCCCHHHHHHH----HHC---------CCCCEEEECCCCCHHHHHHH
T ss_conf 6976999999999648999--99975737684447695999999----850---------79989997898999999999
Q ss_pred HCCCCCCEEEECHHHCC
Q ss_conf 66898968897434358
Q gi|254780197|r 223 SLIENIDGLLVGGASLQ 239 (264)
Q Consensus 223 ~~~~~iDG~LVG~ASl~ 239 (264)
.+ .++||+.+|.|-+.
T Consensus 215 ~~-~g~~gvi~G~al~~ 230 (252)
T PRK13597 215 FQ-AGAEAALAASVFHF 230 (252)
T ss_pred HH-CCCCEEEEHHHHHC
T ss_conf 87-89969987127677
No 41
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=84.20 E-value=2 Score=23.44 Aligned_cols=134 Identities=15% Similarity=0.076 Sum_probs=67.9
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHCCCCCCCC---CCCHH----HH
Q ss_conf 06777540731001042000221357999999999999833474-799816552033349800011---10022----21
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDEEYRSGRTFEVL---QKQLD----CS 153 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~e~~~~~~~~~l---~~Ql~----~~ 153 (264)
.+..+-+.|++.++||-+= -++-+.+.+ + +...|=. .++++- .......+.+.-+. +++.. ..
T Consensus 88 ~~~~ll~~GadkVvigs~a-----~~~p~~i~~-~--~~~~G~q~Iv~siD-~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (253)
T PRK02083 88 DARRLLRAGADKVSINSAA-----VADPELITE-L--ADRFGSQCIVVAID-AKRDGEPGRWEVFTHGGRKPTGIDAVEW 158 (253)
T ss_pred HHHHHHHCCCCEEEECCHH-----HHCCCHHHH-H--HHHCCCEEEEEEEE-EEECCCCCEEEEEECCCCCCCCCCHHHH
T ss_conf 8768987798789999846-----538535578-8--97469835999999-8873768718999807841255239999
Q ss_pred HHCCCCC--CCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEE-CCCCCHHHHHHHHCCCCCCE
Q ss_conf 0000001--34113205135304557643112455446799999963322416430886-27789878999966898968
Q gi|254780197|r 154 LPSEFKS--SVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILY-GGSVDVANAEDFSLIENIDG 230 (264)
Q Consensus 154 l~~~~~~--~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilY-GGSV~~~N~~~l~~~~~iDG 230 (264)
+....+. .. |-|--|=-=||..=++.+-++++.+. .++||++ ||=-+.+.+.++++..++||
T Consensus 159 i~~~~~~g~ge--il~tdI~rDG~~~G~d~~l~~~i~~~-------------~~iPiI~sGGv~s~~di~~~l~~~~i~g 223 (253)
T PRK02083 159 AKEVQELGAGE--ILLTSMDQDGTKNGYDLELTRAVRDA-------------VSVPVIASGGAGNLEHFAEAFTEGGADA 223 (253)
T ss_pred HHHHHHCCCCE--EEEEEECCCCCCCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 99987569878--99998855586678899999999975-------------7999999889999999999998679809
Q ss_pred EEECHHHCC
Q ss_conf 897434358
Q gi|254780197|r 231 LLVGGASLQ 239 (264)
Q Consensus 231 ~LVG~ASl~ 239 (264)
+.+|+|-..
T Consensus 224 v~~G~~~~~ 232 (253)
T PRK02083 224 ALAASVFHF 232 (253)
T ss_pred EEEHHHHHC
T ss_conf 987127776
No 42
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=84.07 E-value=2.4 Score=22.96 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=49.0
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHH----CCCCCCEEEECHHHCCHHHHHHH
Q ss_conf 53045576431124554467999999633224164308862778987899996----68989688974343588999999
Q gi|254780197|r 171 WAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFS----LIENIDGLLVGGASLQHELFLKI 246 (264)
Q Consensus 171 WAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~----~~~~iDG~LVG~ASl~~~~F~~I 246 (264)
--|+|+---.-.-..|..+.+.+.| .+-++||+-|||=||+--.+.+ ....=+-+|.-+|+||-+ |.+|
T Consensus 171 HlIsTdPki~D~p~~EAak~lEdvL------qAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlD-y~~i 243 (403)
T COG2069 171 HLISTDPKIKDTPAKEAAKTLEDVL------QAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLD-YERI 243 (403)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHH------HHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC-HHHH
T ss_conf 9613786556779899999999999------75486889668999764979999998761576477511555667-9999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780197|r 247 VEIVER 252 (264)
Q Consensus 247 i~~~~~ 252 (264)
.+++.+
T Consensus 244 a~AA~k 249 (403)
T COG2069 244 AEAALK 249 (403)
T ss_pred HHHHHH
T ss_conf 999986
No 43
>PRK13116 consensus
Probab=84.00 E-value=3.8 Score=21.67 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=35.4
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHH
Q ss_conf 55--764311245544679999996332241643088627789-8789999668989688974343
Q gi|254780197|r 175 TG--RVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 175 tG--~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~AS 237 (264)
|| +...++.+.+..+.||+. .++||.-|=.++ ++.+++.+ ....||+-||+|=
T Consensus 183 TG~~~~~~~~~l~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~-~~~aDGVIVGSAi 238 (278)
T PRK13116 183 TGTERESSTDGLSAVVDNIKKF---------DGAPILLGFGISSPQHVADAI-AAGASGAITGSAI 238 (278)
T ss_pred CCCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHH-HCCCCEEEECHHH
T ss_conf 2688666678999999999845---------799879981679899999998-6689999987799
No 44
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=83.78 E-value=0.83 Score=25.79 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHCCCCCCCC-CCCHHHHHHC-CCC--CCCCEEEECHHHHHCCCCCCC
Q ss_conf 57999999999999833-474799816552033349800011-1002221000-000--134113205135304557643
Q gi|254780197|r 106 REDSYVVQSKVKSACNA-GLYPIVCIGETDEEYRSGRTFEVL-QKQLDCSLPS-EFK--SSVPVIAYEPIWAIGTGRVPA 180 (264)
Q Consensus 106 ~E~d~~I~~K~~~al~~-~l~pIlCiGE~~~e~~~~~~~~~l-~~Ql~~~l~~-~~~--~~~~iIAYEPvWAIGtG~~a~ 180 (264)
-|++..=-.|.++.+.+ ...+..=|= - ++.-++ ...|+..+.+ +.. .+-+||. =| -||..++
T Consensus 125 ~eg~a~E~~ry~~~~~sG~v~~ladv~---v-----khA~~lG~~~l~~~~~~Tver~laDAvi~S---G~--~tG~~~~ 191 (261)
T TIGR00259 125 IEGNAGELLRYKKLLGSGEVKILADVV---V-----KHAVHLGNRDLESIVLDTVERGLADAVILS---GK--TTGTEVD 191 (261)
T ss_pred EECCHHHHHHHHHCCCCCCEEEEECCC---H-----HHCCCCCCCCHHHHHHHHHHHCCCCEEEEE---CC--CCCCCCC
T ss_conf 004165433433126766456303152---4-----521025883668898644541698838981---54--5788878
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 112455446799999963322416430886277898789999668989688974343
Q gi|254780197|r 181 VVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 181 ~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
.|+.+-+ |+. .+++|||=|-.|+.+|+.++++. -||+-||..=
T Consensus 192 ~e~Lk~a----k~~--------~~~~pVl~gsG~~~~N~~~ll~~--AdG~ivat~~ 234 (261)
T TIGR00259 192 LEELKLA----KET--------VKDTPVLAGSGVNLENVEELLSI--ADGVIVATTI 234 (261)
T ss_pred HHHHHHH----HHH--------CCCCEEEEECCCCHHHHHHHHHH--HCCEEEEEEE
T ss_conf 8889999----875--------17966998478798899999987--3987983565
No 45
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=82.95 E-value=2.3 Score=23.01 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 43112455446799999963322416430886277898789999668989688974343588
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
-+|+++.+++..+|.. .+++.+.--|.++++|+.++.. .+||.+ ++||-..+
T Consensus 212 ~s~~~ik~~v~~~~~~--------~~~v~ieaSGgI~~~ni~~yA~-tGvD~I-s~~a~~~a 263 (272)
T cd01573 212 FSPEELAELVPKLRSL--------APPVLLAAAGGINIENAAAYAA-AGADIL-VTSAPYYA 263 (272)
T ss_pred CCHHHHHHHHHHHHCC--------CCCEEEEEECCCCHHHHHHHHH-CCCCEE-ECCHHHCC
T ss_conf 9999999999997444--------8876999989999999999997-399999-80843277
No 46
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=82.31 E-value=3.2 Score=22.17 Aligned_cols=60 Identities=23% Similarity=0.236 Sum_probs=42.9
Q ss_pred ECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHC-CHH
Q ss_conf 051353045576431124554467999999633224164308862778987899996689896889743435-889
Q gi|254780197|r 167 YEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL-QHE 241 (264)
Q Consensus 167 YEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl-~~~ 241 (264)
.+|-|+=|.+ +.....+.||+. -++||+-.|..+|+.+++++....+|-+.+||+.| ||+
T Consensus 269 s~p~~~~~~~------~~~~~~~~ik~~---------v~~PVi~~G~~tpe~Ae~~l~~G~aDlV~~gR~llADPd 329 (362)
T PRK10605 269 SEPDWAGGEP------YSDAFREKVRAR---------FHGPIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPD 329 (362)
T ss_pred CCCCCCCCCC------CCHHHHHHHHHH---------CCCCEEECCCCCHHHHHHHHHCCCCCEEEEHHHHHHCCC
T ss_conf 2685568987------519999999987---------699789768999999999998899879810068775945
No 47
>PRK02621 consensus
Probab=82.04 E-value=2.7 Score=22.59 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=67.5
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHCCCCCCCCC---CCH----HHH
Q ss_conf 06777540731001042000221357999999999999833474-7998165520333498000111---002----221
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDEEYRSGRTFEVLQ---KQL----DCS 153 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~e~~~~~~~~~l~---~Ql----~~~ 153 (264)
.++.+-+.|++.++||-+= -++-+.+.+- +...|=. +++++-=.......+.+.-++. ++. ...
T Consensus 88 ~~~~ll~~GadkVii~s~a-----~~np~~~~~~---~~~fG~q~Iv~siD~k~~~~~~~gw~~~~~~~~~~~~~~~~~~ 159 (254)
T PRK02621 88 GIKELLRAGADKVSLNSAA-----VRDPDLVRQA---SDRFGSQCIVVAIDARRRKPDNPGWDVYVRGGRENTGLDAVEW 159 (254)
T ss_pred HHHHHHHCCCCEEEECCHH-----HHCCCHHHHH---HHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 9999997499989998867-----6473544556---8756984339999955353478862899668845577679999
Q ss_pred HHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEE
Q ss_conf 0000001341132051353045576431124554467999999633224164308862778-987899996689896889
Q gi|254780197|r 154 LPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLL 232 (264)
Q Consensus 154 l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~L 232 (264)
+........-=|-|--|=-=||++=++.+.++++.+. -++|+++.|.| +++...+.+...+++|+.
T Consensus 160 ~~~~~~~g~geil~tdI~~DGt~~G~d~~l~~~i~~~-------------~~iPvi~sGGi~s~edi~~~l~~~~v~gvi 226 (254)
T PRK02621 160 AEEVAERGAGEILLTSMDGDGTQAGYDLELTRAIAEA-------------VEIPVIASGGAGCCDHIAEALTEGKAEAAL 226 (254)
T ss_pred HHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9887762889699988804797576886999999971-------------799799977999999999999858981987
Q ss_pred ECHHHCCH
Q ss_conf 74343588
Q gi|254780197|r 233 VGGASLQH 240 (264)
Q Consensus 233 VG~ASl~~ 240 (264)
+|+|-..-
T Consensus 227 vG~al~~~ 234 (254)
T PRK02621 227 LASLLHYG 234 (254)
T ss_pred EHHHHHCC
T ss_conf 75787889
No 48
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.69 E-value=4.7 Score=21.11 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH------HHHHHHHHHHHH
Q ss_conf 4679999996332241643088627789878999966898968897434358899------999999999999
Q gi|254780197|r 188 HSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL------FLKIVEIVERVY 254 (264)
Q Consensus 188 ~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~------F~~Ii~~~~~~~ 254 (264)
..+||.. ..- ..+++++==|.|+++|+.++++.+++ +-|||.+|-+++ |..|-+.++++.
T Consensus 143 ~~~lkal-~~p----~p~~~~~ptGGV~~~N~~~yl~~~~v--~~vgGs~l~~~~~i~~~dw~~I~~~a~ea~ 208 (212)
T PRK06015 143 AAFLKAL-SSP----LAGTFFCPTGGISLKNARDYLSLPNV--VCVGGSWVAPKELVAAGDWAAITKLAAEAA 208 (212)
T ss_pred HHHHHHH-HCC----CCCCCEEECCCCCHHHHHHHHCCCCE--EEEECHHHCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998-577----99998886289898889999808981--999883538999997189999999999999
No 49
>PRK10128 putative aldolase; Provisional
Probab=81.38 E-value=3.1 Score=22.26 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=81.4
Q ss_pred CCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 12067775407310010420002213579999999999998334747998165520333498000111002221000000
Q gi|254780197|r 80 DISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFK 159 (264)
Q Consensus 80 eiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~ 159 (264)
...++++...|.+|++|-. |.- .-+-+.+..-+..+...+..|++=|-.+.. ..+++=|+.+..++.-
T Consensus 12 p~~aEi~a~~G~D~v~iD~-EHg---~~~~~~~~~~~~a~~~~~~~piVRv~~~~~--------~~i~r~LD~Ga~Giiv 79 (250)
T PRK10128 12 SYMAEIAATSGYDWLLIDG-EHA---PNTIQDLYHQLQAVAPYASQPVIRPVEGSK--------ALIKQVLDIGAQTLLI 79 (250)
T ss_pred HHHHHHHHCCCCCEEEEEC-CCC---CCCHHHHHHHHHHHHHCCCCEEEECCCCCH--------HHHHHHHHCCCCEEEE
T ss_conf 7999999808989999817-789---999999999999998659971998589998--------8999998378987785
Q ss_pred --------CCCC--EEEECHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEE-ECCCCCHHHHHHHHCCCC
Q ss_conf --------1341--132051353045576-4311245544679999996332241643088-627789878999966898
Q gi|254780197|r 160 --------SSVP--VIAYEPIWAIGTGRV-PAVVDLEKIHSFVRRILLDRFPEEGQKMRIL-YGGSVDVANAEDFSLIEN 227 (264)
Q Consensus 160 --------~~~~--iIAYEPvWAIGtG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~il-YGGSV~~~N~~~l~~~~~ 227 (264)
.+.+ ..-|-|..-=|-|-. +....-.....++.+. . .+.+-++ ==.----+|+++|++.|+
T Consensus 80 P~V~tae~A~~~V~~~kYpP~G~Rg~g~~~~r~~~~g~~~~y~~~~----n---~~~~vi~qIEt~~av~nldeI~av~G 152 (250)
T PRK10128 80 PMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQV----N---DSLCLLVQVESKTALDNLDEILDVEG 152 (250)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----H---HCCEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 4748699999999985169999998886423224457747999998----6---41366544155899987999858899
Q ss_pred CCEEEECHHHCC----------HHHHHHHHHHHHHHHHHH
Q ss_conf 968897434358----------899999999999999984
Q gi|254780197|r 228 IDGLLVGGASLQ----------HELFLKIVEIVERVYVDS 257 (264)
Q Consensus 228 iDG~LVG~ASl~----------~~~F~~Ii~~~~~~~~~~ 257 (264)
||+++||-+=|. ..++.+.++.+.+....+
T Consensus 153 vD~~fiGp~DLs~slG~pg~~~~p~v~~ai~~v~~~~~~~ 192 (250)
T PRK10128 153 IDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAA 192 (250)
T ss_pred CCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8889988488998659999999869999999999999986
No 50
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=80.95 E-value=2.4 Score=22.94 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=40.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC-HHHHHHHH
Q ss_conf 455764311245544679999996332241643088627789878999966898968897434358-89999999
Q gi|254780197|r 174 GTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-HELFLKIV 247 (264)
Q Consensus 174 GtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~-~~~F~~Ii 247 (264)
|+|..-+|+ +++.+|+.+ ++++++|||.+.......-+-...-|-+-||.+--+ ++.+++++
T Consensus 156 gSGa~v~~e----~V~~vk~~l--------~~~~LivGGGIrs~e~a~~~~~AgAD~IVvGn~iee~~~~~l~~v 218 (219)
T cd02812 156 YSGAYGPPE----VVRAVKKVL--------GDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALETV 218 (219)
T ss_pred CCCCCCCHH----HHHHHHHHC--------CCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEECHHHHHHHH
T ss_conf 689979999----999999846--------797099928979999999999869999998872240689997643
No 51
>PRK08782 consensus
Probab=80.55 E-value=5.1 Score=20.86 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH------HHHHHHHHHHH
Q ss_conf 679999996332241643088627789878999966898968897434358899------99999999999
Q gi|254780197|r 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL------FLKIVEIVERV 253 (264)
Q Consensus 189 ~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~------F~~Ii~~~~~~ 253 (264)
.++|.. ..- ..+++++==|.|+++|+.++++.+++ +-|||.+|-+++ |.+|-+.+++.
T Consensus 146 ~~lkal-~~p----fp~~~f~pTGGV~~~N~~~yl~~~~v--~~vgGS~l~~~~li~~~dw~~I~~~a~~~ 209 (219)
T PRK08782 146 QMLKGL-AGP----LSELKLCPTGGISETNAAEFLSQPNV--LCIGGSWMVPKDWLAQGQWDKVKESSAKA 209 (219)
T ss_pred HHHHHH-HCC----CCCCEEEECCCCCHHHHHHHHHCCCE--EEEECHHHCCHHHHHCCCHHHHHHHHHHH
T ss_conf 999998-476----99981876799898789999807993--99988253899998619999999999999
No 52
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=79.27 E-value=2.5 Score=22.75 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=79.3
Q ss_pred EEECCHHHHHHHHHHHCCCCCCH----HHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHH
Q ss_conf 99689655999999732576310----22201222333433212067775407310010420002213579999999999
Q gi|254780197|r 42 AICPPATLIYESSRLCKTSSVII----GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVK 117 (264)
Q Consensus 42 vi~Pp~~~L~~~~~~~~~s~I~i----gAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~ 117 (264)
.+.|++-.+..+.+...- ++.+ =+-|..+.+.-=-+=.-+..+++++|++.+.+|-=-+- ++=|....+++.
T Consensus 34 GlTPs~~~i~~~~~~~~i-pv~vMIRPR~G~F~Ys~~E~~~M~~dI~~~~~~G~~GvV~G~L~~d---~~iD~~~~~~li 109 (202)
T pfam03932 34 GLTPSYGVIKSAAQRAKI-PVYVMIRPRGGDFVYSDHELKAMLEDILKAVELGAPGVVLGALTAD---GEIDTKRMEKLI 109 (202)
T ss_pred CCCCCHHHHHHHHHHCCC-CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC---CCCCHHHHHHHH
T ss_conf 979899999999986599-7499984279988649899999999999999869897899888899---982999999999
Q ss_pred HHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99833474799816552033349800011100222100000013411320513530455764311245544679999996
Q gi|254780197|r 118 SACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLD 197 (264)
Q Consensus 118 ~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~ 197 (264)
.+ ..++...+= +..+.+.+|.+. ++..... -..-|+- +|...+ +.+-...+++.+..
T Consensus 110 ~~-a~~l~~TFH-----------RAfD~~~d~~~a-l~~L~~l-----G~~rILT--SGg~~~---a~~g~~~L~~l~~~ 166 (202)
T pfam03932 110 EA-AGGLGVTFH-----------RAFDMCPDPEEA-LEQLIEL-----GCERVLT--SGGPLS---ALEGLEKLASLVAQ 166 (202)
T ss_pred HH-HCCCCEEEE-----------CHHHCCCCHHHH-HHHHHHC-----CCCEEEC--CCCCCC---HHHHHHHHHHHHHH
T ss_conf 97-468855986-----------204305999999-9999975-----9987875--799787---66749999999996
Q ss_pred HCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEE
Q ss_conf 3322416430886277898789999668989688
Q gi|254780197|r 198 RFPEEGQKMRILYGGSVDVANAEDFSLIENIDGL 231 (264)
Q Consensus 198 ~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~ 231 (264)
....+.|+=||.|+++|+.++.....++-+
T Consensus 167 ----a~~~i~Im~GgGI~~~N~~~l~~~~g~~~~ 196 (202)
T pfam03932 167 ----AGGRISIMAGAGVNAENIAELRQLTGVAEV 196 (202)
T ss_pred ----CCCCEEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf ----599849995799899999999997199488
No 53
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=79.18 E-value=5.6 Score=20.59 Aligned_cols=125 Identities=25% Similarity=0.376 Sum_probs=67.9
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
.+++++.|++.+|+=--= +-|.++ -...+.++||.+|+-+-=+-.+ +.++++.+ ...
T Consensus 115 ~~~~~~~GvdGlivpDLP----~ee~~~----~~~~~~~~gi~~I~lvaPtt~~-------~rl~~i~~--------~a~ 171 (265)
T COG0159 115 LRRAKEAGVDGLLVPDLP----PEESDE----LLKAAEKHGIDPIFLVAPTTPD-------ERLKKIAE--------AAS 171 (265)
T ss_pred HHHHHHCCCCEEEECCCC----HHHHHH----HHHHHHHCCCCEEEEECCCCCH-------HHHHHHHH--------HCC
T ss_conf 999997599879857898----667778----9999997698679886999998-------99999997--------479
Q ss_pred CEEEECHHHHHC-CCCC-CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 113205135304-5576-431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 163 PVIAYEPIWAIG-TGRV-PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 163 ~iIAYEPvWAIG-tG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
-.|=|=.. -| ||.- +....+.+..+.||++ .++||++|=.| +++-++++.+. -||+-||+|=
T Consensus 172 GFiY~vs~--~GvTG~~~~~~~~~~~~v~~vr~~---------~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAi-- 236 (265)
T COG0159 172 GFIYYVSR--MGVTGARNPVSADVKELVKRVRKY---------TDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAI-- 236 (265)
T ss_pred CCEEEEEC--CCCCCCCCCCCHHHHHHHHHHHHH---------CCCCEEEECCCCCHHHHHHHHHH--CCEEEECHHH--
T ss_conf 85899966--666677765304699999999974---------48973874486999999999976--8857973999--
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999999
Q gi|254780197|r 240 HELFLKIVEI 249 (264)
Q Consensus 240 ~~~F~~Ii~~ 249 (264)
+++++-
T Consensus 237 ----V~~i~~ 242 (265)
T COG0159 237 ----VKIIEE 242 (265)
T ss_pred ----HHHHHH
T ss_conf ----999995
No 54
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=78.30 E-value=3.6 Score=21.77 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=51.4
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCHHH-HC------CCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHH
Q ss_conf 99999999833474799816552033-34------980001110022210000001341132051353045576431124
Q gi|254780197|r 112 VQSKVKSACNAGLYPIVCIGETDEEY-RS------GRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDL 184 (264)
Q Consensus 112 I~~K~~~al~~~l~pIlCiGE~~~e~-~~------~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i 184 (264)
-...+.++..+.-.=|+||||+==++ .. ..-.++...||+.+. .-..++|| |+
T Consensus 79 ~~~~l~~l~~~~~~~v~AiGE~GLDY~~~~~~~e~~~Q~e~F~~q~~lA~---~~~~P~ii-----------------H~ 138 (269)
T TIGR00010 79 DIKELEKLAKNAHPKVVAIGETGLDYYKADEKKERRRQKEVFRAQLQLAE---ELNLPVII-----------------HA 138 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH---HCCCCEEE-----------------EC
T ss_conf 99999999985069547985104404306875217899999999999999---71996899-----------------78
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCEE---EECCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 554467999999633224164308---8627789878999966898968897
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKMRI---LYGGSVDVANAEDFSLIENIDGLLV 233 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i~i---lYGGSV~~~N~~~l~~~~~iDG~LV 233 (264)
..+.+.+-++|.+.|.....+.++ =|+||+.. ++++++..++ =+++
T Consensus 139 RdA~~d~~~iL~~~y~~~~~~~~g~~HCftg~~E~--a~~~ld~gd~-~~yi 187 (269)
T TIGR00010 139 RDAEEDVLDILREYYAEKAPKVGGVLHCFTGDAEL--AKKLLDLGDL-LFYI 187 (269)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH--HHHHHCCCCE-EEEE
T ss_conf 84579999999999842787787579814888899--9999606987-9999
No 55
>PRK05211 consensus
Probab=78.30 E-value=2.2 Score=23.12 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHCCCCCCCCC---------CC-
Q ss_conf 206777540731001042000221357999999999999833474-7998165520333498000111---------00-
Q gi|254780197|r 81 ISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDEEYRSGRTFEVLQ---------KQ- 149 (264)
Q Consensus 81 iSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~e~~~~~~~~~l~---------~Q- 149 (264)
=.++.|-+.|++.++||-.= -++.+.+++ .+...|=. ++++|- .......+++.-+.. ..
T Consensus 78 ~~i~~ll~~GadkViigs~a-----~~np~li~~---~~~~fG~q~IvvsiD-~~~~~~~~~~~v~~~~g~~~~~~~t~~ 148 (248)
T PRK05211 78 EDAREILSFGADKISINSPA-----LADPTLITR---LADRFGVQCIVVGID-SWFDAETGKYQVYQYTGDESRTKATQW 148 (248)
T ss_pred HHHHHHHHCCCCEEEECCHH-----HHCCHHHHH---HHHHCCCCEEEEEEE-EECCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 99999998799889989767-----619618999---998579936999997-102555785799982586565304773
Q ss_pred -HHHHHHCCCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCC
Q ss_conf -2221000000--1341132051353045576431124554467999999633224164308862778-98789999668
Q gi|254780197|r 150 -LDCSLPSEFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLI 225 (264)
Q Consensus 150 -l~~~l~~~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~ 225 (264)
+...++.... ... |-|--|=-=||.+=++.+.++++.+. -++||+..|.| +.+...+++..
T Consensus 149 ~~~d~i~~~~~~G~ge--Il~t~IdrDG~~~G~dl~l~~~i~~~-------------~~iPvIasGGv~s~~di~~~~~~ 213 (248)
T PRK05211 149 ETLDWVKEVQKRGAGE--IVLNMMNQDGVRNGYDLAQLKKVRAI-------------CHVPLIASGGAGTMEHFLEAFRD 213 (248)
T ss_pred CHHHHHHHHHHCCCCE--EEEEEECCCCCCCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHHH
T ss_conf 6999999999759866--99989878997278899999999974-------------69999998888999999999986
Q ss_pred CCCCEEEECHHHCC
Q ss_conf 98968897434358
Q gi|254780197|r 226 ENIDGLLVGGASLQ 239 (264)
Q Consensus 226 ~~iDG~LVG~ASl~ 239 (264)
.++||+.+|+|-..
T Consensus 214 ~~~~gvi~gs~~~~ 227 (248)
T PRK05211 214 ADVDGALAASVFHK 227 (248)
T ss_pred CCCHHHHHHHHHHC
T ss_conf 79841330488888
No 56
>PRK13122 consensus
Probab=77.95 E-value=6.1 Score=20.36 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=37.9
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 557-6431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 175 TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 175 tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
||. ..-..++.+..+.||+. .++||..|=.+ +++-++++... .||+-||+|=.+
T Consensus 164 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~v~~i~~~--ADGvIVGSaivk 219 (242)
T PRK13122 164 TGQNGAFHPELKRKIESIKAI---------ANVPVVAGFGIRTPQHVADIKEV--ADGIVIGSEIVK 219 (242)
T ss_pred CCCCCCCCHHHHHHHHHHHHH---------CCCCEEEECCCCCHHHHHHHHHH--CCEEEECHHHHH
T ss_conf 576555658899999999972---------59985871587999999999811--999998489999
No 57
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=77.92 E-value=6.1 Score=20.35 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=65.9
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCC----CCCCCCCCHHHHHHCC
Q ss_conf 067775407310010420002213579999999999998334747998165520333498----0001110022210000
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGR----TFEVLQKQLDCSLPSE 157 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~----~~~~l~~Ql~~~l~~~ 157 (264)
.++.+-+.|++.++||-.= -++-+.+++-++ +.|=+.++.+ +-|+..- +.+...-.+...++..
T Consensus 87 ~~~~~l~~GadkVvigS~a-----~~n~~~i~~~~~---~~g~~ivvsi----D~k~~~v~~~gw~~~t~~~~~~~i~~~ 154 (241)
T PRK00748 87 TVEAYLDAGVARVIIGTAA-----VKNPELVKEACK---KFPGRIVVGL----DARDGKVATRGWQEVSGVDLEDLAKRF 154 (241)
T ss_pred HHHHHHHCCCCEEEECCHH-----HHCHHHHHHHHH---HCCCCEEEEE----EECCCEEECCCCCCCCCCCHHHHHHHH
T ss_conf 9999997697758864710-----339689999986---2355579999----821665401575546797489999999
Q ss_pred CC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCC--CCCCEEE
Q ss_conf 00--13411320513530455764311245544679999996332241643088627789-8789999668--9896889
Q gi|254780197|r 158 FK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLI--ENIDGLL 232 (264)
Q Consensus 158 ~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~--~~iDG~L 232 (264)
.. ...++ |--|=-=||.+=++.+.++++.+. -++|++++|.|. .+..+.|... +.++|++
T Consensus 155 ~~~G~~eii--~tdI~~DGt~~G~d~~l~~~i~~~-------------~~ipviasGGv~s~~Di~~L~~~~~~gv~gvi 219 (241)
T PRK00748 155 EDAGVAAII--YTDISRDGTLSGPNVELTRELAAA-------------TPIPVIASGGVSSLDDIRALKALGPEGVEGVI 219 (241)
T ss_pred HHCCCCEEE--EEEEECCCCCCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 855875699--988705685476899999999986-------------89989998899999999999860317924899
Q ss_pred ECHHHCC
Q ss_conf 7434358
Q gi|254780197|r 233 VGGASLQ 239 (264)
Q Consensus 233 VG~ASl~ 239 (264)
||.|=++
T Consensus 220 iG~Aly~ 226 (241)
T PRK00748 220 VGKALYE 226 (241)
T ss_pred EEHHHHC
T ss_conf 8789877
No 58
>PRK02145 consensus
Probab=76.72 E-value=6.6 Score=20.14 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=66.2
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCC--HHHHCCCCCCCCC---CCHH----
Q ss_conf 06777540731001042000221357999999999999833474-799816552--0333498000111---0022----
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETD--EEYRSGRTFEVLQ---KQLD---- 151 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~--~e~~~~~~~~~l~---~Ql~---- 151 (264)
.+..+-+.|++.|++|-.- -++-+.+.+-.+ ..|=. +++.+.=.. ...+.+++.-+.. ++..
T Consensus 89 ~~~~ll~~GadkVii~s~a-----~~np~~v~~~~~---~fG~q~Iv~siD~k~~~~~~~~~~~~v~~~~~~~~t~~~~~ 160 (257)
T PRK02145 89 DVRRLLNAGADKVSMNSSA-----VANPQLVRDAAD---KYGSQCIVVAIDAKRVSADGEPPRWEVFTHGGRKATGLDAV 160 (257)
T ss_pred HHHHHHHCCCCEEEEHHHH-----HHCCCHHHHHHH---HCCCCCEEEEEEEEECCCCCCCCEEEEEECCCEECCCCCHH
T ss_conf 8999998199889841556-----659302245787---66983449999987336777775089997787143677455
Q ss_pred HHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCE
Q ss_conf 210000001341132051353045576431124554467999999633224164308862778-9878999966898968
Q gi|254780197|r 152 CSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDG 230 (264)
Q Consensus 152 ~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG 230 (264)
..+.......--=|-|--|=-=||.+-++.+.++++.+. -++|+++.|.| +.+...++++...++|
T Consensus 161 ~~~~~~~~~G~geil~tdI~rDG~~~G~dl~l~~~i~~~-------------~~ipvIasGGi~s~~di~~~~~~~~~~a 227 (257)
T PRK02145 161 EWARKMAELGAGEILLTSMDRDGTKSGFDLALTRAVSDA-------------VPVPVIASGGVGSLQHLADGITEGHADA 227 (257)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHC-------------CCCCEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 765688761878689999847787788897999999862-------------6998999868999999999998089848
Q ss_pred EEECHHHC
Q ss_conf 89743435
Q gi|254780197|r 231 LLVGGASL 238 (264)
Q Consensus 231 ~LVG~ASl 238 (264)
+.+|.+-+
T Consensus 228 v~~g~~~~ 235 (257)
T PRK02145 228 VLAASIFH 235 (257)
T ss_pred EEEHHHHH
T ss_conf 76532677
No 59
>PRK08104 consensus
Probab=76.21 E-value=6.9 Score=20.06 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH------HHHHHHHHHH
Q ss_conf 679999996332241643088627789878999966898968897434358899------9999999999
Q gi|254780197|r 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL------FLKIVEIVER 252 (264)
Q Consensus 189 ~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~------F~~Ii~~~~~ 252 (264)
++||.. +.-| .+++++==|.|+++|+.++++.+.+ +-+||.+|-+++ |..|-+.+++
T Consensus 144 ~~lkal-~~p~----p~~~f~ptGGV~~~N~~~yl~~~~v--~~vgGS~l~~~~~i~~~d~~~I~~~a~~ 206 (212)
T PRK08104 144 KALQAI-SGPF----SQIRFCPTGGITPANYRDYLALKSV--LCIGGSWLVPADALEAGDWDRITKLAKE 206 (212)
T ss_pred HHHHHH-HCCC----CCCEEEECCCCCHHHHHHHHHCCCE--EEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf 999998-5558----9981896489898899999807987--9998835389999874899999999999
No 60
>PRK13118 consensus
Probab=75.71 E-value=7.1 Score=19.97 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=36.9
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 557-6431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 175 TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 175 tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
||. ....+++.+....||+. .++|+..|=.+ +++-++.+.+. .||+-||+|-.+
T Consensus 183 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~~~~v~~~--aDGvIVGSa~Vk 238 (269)
T PRK13118 183 TGAAALDTEHVEEAVARLRRH---------TDLPVVVGFGIRDAESAAAIARL--ADGVVVGSALVD 238 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCHHHHHHHHCC--CCEEEECHHHHH
T ss_conf 787766719899999999962---------58981787167999999999800--999998589999
No 61
>PRK13127 consensus
Probab=75.61 E-value=7.1 Score=19.96 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=37.2
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 55-76431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 175 TG-RVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 175 tG-~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
|| +..-++++.+..+.||+. .++||..|=.+ +++.++++++ ...||+-||+|-.
T Consensus 176 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~v~~~~~-~~aDGvIVGSaiv 231 (262)
T PRK13127 176 TGAREDVEEATFDLLKRARTT---------CKNKIAVGFGISKGEHAEELLD-AGADGVIVGSALV 231 (262)
T ss_pred CCCCCCCHHHHHHHHHHHHHC---------CCCCEEEEEEECCHHHHHHHHH-CCCCEEEECHHHH
T ss_conf 687655528899999999961---------7998489933488999999986-4999999878999
No 62
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=75.35 E-value=2.4 Score=22.90 Aligned_cols=135 Identities=17% Similarity=0.309 Sum_probs=68.1
Q ss_pred CCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCC-
Q ss_conf 2067775407310010420002213579999999999998334747998165520333498000111002221000000-
Q gi|254780197|r 81 ISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFK- 159 (264)
Q Consensus 81 iSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~- 159 (264)
..++++...|.+|++|=. |.- .-+.+.+..-+.++...+..|++=|-+... ..+++=|+.+..++.-
T Consensus 24 ~~~Ei~a~~G~D~v~iD~-EHg---~~~~~~~~~~~~a~~~~g~~~iVRvp~~~~--------~~i~~~LD~Ga~GiivP 91 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDG-EHA---PNDVLTFIPQLMALKGSASAPVVRPPWNEP--------VIIKRLLDIGFYNFLIP 91 (249)
T ss_pred HHHHHHHCCCCCEEEEEC-CCC---CCCHHHHHHHHHHHHHCCCCCEEECCCCCH--------HHHHHHHCCCCCEEEEC
T ss_conf 999999718969999810-448---999999999999998469984897999987--------89999970899878951
Q ss_pred -------CCCCE--EEECHHHHHCC-CCCC---CCHHHHHHHHHHHHHHHHHCCHHHCCCE--EEECCCCCHHHHHHHHC
Q ss_conf -------13411--32051353045-5764---3112455446799999963322416430--88627789878999966
Q gi|254780197|r 160 -------SSVPV--IAYEPIWAIGT-GRVP---AVVDLEKIHSFVRRILLDRFPEEGQKMR--ILYGGSVDVANAEDFSL 224 (264)
Q Consensus 160 -------~~~~i--IAYEPvWAIGt-G~~a---~~~~i~~~~~~Ir~~l~~~~~~~~~~i~--ilYGGSV~~~N~~~l~~ 224 (264)
.+.++ .=|=|. |+ |-.+ ...+- ..-.+++.. .+++- +.==.----+|+++|++
T Consensus 92 ~V~t~eea~~~v~a~kypP~---G~Rg~~~~~r~~~yg-~~~~y~~~~--------n~~~~vi~qIEt~~av~nldeI~a 159 (249)
T TIGR03239 92 FVESAEEAERAVAATRYPPE---GIRGVSVSHRSNRYG-TVPDYFATI--------NDNITVLVQIESQKGVDNVDEIAA 159 (249)
T ss_pred CCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCC-CCHHHHHHH--------HHCCEEEEEECCHHHHHHHHHHHC
T ss_conf 74559999999997344999---998887663211247-706999998--------644278999658899987999967
Q ss_pred CCCCCEEEECHHHCC
Q ss_conf 898968897434358
Q gi|254780197|r 225 IENIDGLLVGGASLQ 239 (264)
Q Consensus 225 ~~~iDG~LVG~ASl~ 239 (264)
.|+||+++||-+=|.
T Consensus 160 v~GvD~ifiGP~DLs 174 (249)
T TIGR03239 160 VDGVDGIFVGPSDLA 174 (249)
T ss_pred CCCCCEEEECHHHHH
T ss_conf 899888998848999
No 63
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=75.22 E-value=7.3 Score=19.90 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=36.3
Q ss_pred CCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHHC-CHHHHHHHHHH
Q ss_conf 643088627789-87899996689896889743435-88999999999
Q gi|254780197|r 204 QKMRILYGGSVD-VANAEDFSLIENIDGLLVGGASL-QHELFLKIVEI 249 (264)
Q Consensus 204 ~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~ASl-~~~~F~~Ii~~ 249 (264)
.++||++-|.|. .+.+.++++..++||+.|||+.+ +|--|.+|-+.
T Consensus 182 ~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~iF~~i~~~ 229 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHH
T ss_conf 997799838909999999999850999999878887698899999997
No 64
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=75.15 E-value=5.4 Score=20.72 Aligned_cols=143 Identities=19% Similarity=0.256 Sum_probs=80.4
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 5599999973257-631022201-22233343321206777540731001042000221357999999999999833474
Q gi|254780197|r 48 TLIYESSRLCKTS-SVIIGAQDC-HIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 (264)
Q Consensus 48 ~~L~~~~~~~~~s-~I~igAQnv-~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~ 125 (264)
..+..+++.. . ++.+||=-| +.++ ..+-.+.|++|++==|.+-+ + ++.|.+.++=
T Consensus 48 ~aI~~l~~~~--P~~~~iGAGTVL~~~Q---------~~~A~~AGA~F~vSPG~~p~--------l----~~~~~~~~~P 104 (205)
T TIGR01182 48 EAIRALRKEV--PKDALIGAGTVLNPEQ---------LRQAVAAGAQFIVSPGLTPE--------L----AKHAKDKGIP 104 (205)
T ss_pred HHHHHHHHHC--CCCCEECCCCCCCHHH---------HHHHHHCCCCEEECCCCCHH--------H----HHHHHHCCCC
T ss_conf 9999999728--2334871676489899---------99999708957876978889--------9----9998508881
Q ss_pred EEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCC---CHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 7998165520333498000111002221000000134113205135304557643---1124554467999999633224
Q gi|254780197|r 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPA---VVDLEKIHSFVRRILLDRFPEE 202 (264)
Q Consensus 126 pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~---~~~i~~~~~~Ir~~l~~~~~~~ 202 (264)
- +.++...+.++.|||= |-+.= |.+.--=.+++|..- .=
T Consensus 105 ~---------------------------iPGV~tpsEi~~Al~~------G~~~lKlFPAe~~GG~~~lkAL~-GP---- 146 (205)
T TIGR01182 105 I---------------------------IPGVATPSEIMLALEL------GITALKLFPAEVVGGVKMLKALA-GP---- 146 (205)
T ss_pred E---------------------------ECCCCCHHHHHHHHHC------CCCEEEECCCCCCCHHHHHHHHC-CC----
T ss_conf 2---------------------------1777687899999875------77465212562353089999731-65----
Q ss_pred HCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH------HHHHHHHHHHHH
Q ss_conf 164308862778987899996689896889743435889------999999999999
Q gi|254780197|r 203 GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE------LFLKIVEIVERV 253 (264)
Q Consensus 203 ~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~------~F~~Ii~~~~~~ 253 (264)
-.++|+.==|.||++|+.||+..|+| +=+||..|-|. +|-+|-+.++++
T Consensus 147 f~~v~F~PTGGi~l~N~~~YLa~p~v--~c~GGSWl~P~~~~~~g~wd~i~~l~r~a 201 (205)
T TIGR01182 147 FPQVRFCPTGGINLDNARDYLALPNV--ACVGGSWLVPKDLIAAGDWDEITELAREA 201 (205)
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCE--EEEECCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf 78984514799988789999718937--99816314647887589967999999999
No 65
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=74.78 E-value=4 Score=21.53 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCEEEECCC-CCHHHHHHHHCCCCCCEEEECHHHCC-HHHHHHHH
Q ss_conf 430886277-89878999966898968897434358-89999999
Q gi|254780197|r 205 KMRILYGGS-VDVANAEDFSLIENIDGLLVGGASLQ-HELFLKIV 247 (264)
Q Consensus 205 ~i~ilYGGS-V~~~N~~~l~~~~~iDG~LVG~ASl~-~~~F~~Ii 247 (264)
++||++-|. .+.+-+.+.++..++||++|||+++. |--|.++-
T Consensus 183 ~ipvi~NGdi~~~~d~~~~l~~tg~dgvMigRga~~nPwif~~~~ 227 (309)
T pfam01207 183 SIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQH 227 (309)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHH
T ss_conf 982898089488999999986109999998489774988889889
No 66
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=74.59 E-value=4.5 Score=21.21 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC-HHHHHHH
Q ss_conf 643088627789878999966898968897434358-8999999
Q gi|254780197|r 204 QKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-HELFLKI 246 (264)
Q Consensus 204 ~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~-~~~F~~I 246 (264)
.+++++|||.++......-+....-|-+-||.+--+ ++.+.+.
T Consensus 184 ~~~~LivGGGIrs~e~a~~~~~aGAD~IVvGn~ie~d~~~~l~t 227 (229)
T PRK04169 184 TDTPLIVGGGIRSPEQAREMAKAGADTIVVGTIIEEDIEKALET 227 (229)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEECCHHHHHHH
T ss_conf 89878992896999999999976999999886201079999864
No 67
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=74.53 E-value=2.6 Score=22.68 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=75.1
Q ss_pred HHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 99973257631022201222333433212067775407310010420002213579999999999998334747998165
Q gi|254780197|r 53 SSRLCKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGE 132 (264)
Q Consensus 53 ~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE 132 (264)
+.+.++..+..+|..-. ......++++...|.+|++|=. |.- .=+.+.+..-+.++...+..|++=|-+
T Consensus 10 lk~~L~~g~~~~G~~~~-------~~sp~~~Ei~a~~G~Dfv~iD~-EHg---~~~~~~l~~~i~a~~~~~~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQVQIGCWSA-------LSNPITTEVLGLAGFDWLVLDG-EHA---PNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHCCCCEEEEEEC-------CCCHHHHHHHHCCCCCEEEECC-CCC---CCCHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 99999779977998857-------8998999999728989999837-789---999999999999997179974896788
Q ss_pred CCHHHHCCCCCCCCCCCHHHHHHCCCC--------CCCC--EEEECHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 520333498000111002221000000--------1341--132051353045576-43112455446799999963322
Q gi|254780197|r 133 TDEEYRSGRTFEVLQKQLDCSLPSEFK--------SSVP--VIAYEPIWAIGTGRV-PAVVDLEKIHSFVRRILLDRFPE 201 (264)
Q Consensus 133 ~~~e~~~~~~~~~l~~Ql~~~l~~~~~--------~~~~--iIAYEPvWAIGtG~~-a~~~~i~~~~~~Ir~~l~~~~~~ 201 (264)
+.. ..+++=|+.+..++.- .+.+ ..=|-|.--=|-+-. ....+ ..+-.++++.-.+.
T Consensus 79 ~~~--------~~i~r~LD~Ga~GvivP~V~s~eea~~~V~a~~YpP~G~RG~~~~~ra~~y-g~~~~y~~~~n~~~--- 146 (256)
T PRK10558 79 NEP--------VIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMF-GTVPDYFAQSNKNI--- 146 (256)
T ss_pred CCH--------HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHEEECCCCCCCCCCCCHHHHC-CCCHHHHHHHHHCC---
T ss_conf 988--------999999707987556147699999999998745489998687776134304-76079999976434---
Q ss_pred HHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 41643088627789878999966898968897434358
Q gi|254780197|r 202 EGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 202 ~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
-+-+.==.----+|+++|++.|+||+++||-+=|.
T Consensus 147 ---~vi~qIEt~~av~nldeI~av~GvD~ifiGp~DLs 181 (256)
T PRK10558 147 ---TILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_pred ---EEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf ---78888536789988999967899888998858999
No 68
>PRK04281 consensus
Probab=74.38 E-value=6.8 Score=20.09 Aligned_cols=139 Identities=12% Similarity=0.012 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHCCCCCCCCC---CCH----
Q ss_conf 21206777540731001042000221357999999999999833474-7998165520333498000111---002----
Q gi|254780197|r 79 GDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDEEYRSGRTFEVLQ---KQL---- 150 (264)
Q Consensus 79 GeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~e~~~~~~~~~l~---~Ql---- 150 (264)
-.-.+..+-+.|++.+++|-.- -++.+.+.+ .+...|=. +++++-=.....+.+.+.-+.. ++.
T Consensus 85 s~e~~~~ll~~GadkViigs~a-----~~np~~l~~---~~~~fG~q~Iv~siD~k~~~~~~~~~~i~~~g~~~~t~~~~ 156 (254)
T PRK04281 85 TVADIRRLLNAGADKVSINTAA-----VTRPDLIDE---AAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDA 156 (254)
T ss_pred ECHHHHHHHHCCCCEEEECHHH-----HHCCHHHHH---HHHHCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCH
T ss_conf 5188999997699889977767-----649267676---78755982179999888502468845999758864775449
Q ss_pred HHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCC
Q ss_conf 2210000001341132051353045576431124554467999999633224164308862778-987899996689896
Q gi|254780197|r 151 DCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENID 229 (264)
Q Consensus 151 ~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iD 229 (264)
...+....+..--=|-|--|=-=||.+-++.+.++++. +. .++||++.|.| +.+...++++...+|
T Consensus 157 ~~~~~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~----~~---------~~iPvIasGGv~~~~di~~~~~~~~~~ 223 (254)
T PRK04281 157 VEWAVEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVA----EA---------VDIPVIASGGVGNVRHLIEGITEGKAD 223 (254)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHH----HH---------CCCCEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999987529989999888578876876869999998----61---------699899978989999999999808988
Q ss_pred EEEECHHHC
Q ss_conf 889743435
Q gi|254780197|r 230 GLLVGGASL 238 (264)
Q Consensus 230 G~LVG~ASl 238 (264)
|+.+|.+-.
T Consensus 224 ~v~~g~~~~ 232 (254)
T PRK04281 224 AVLAAGIFH 232 (254)
T ss_pred EEEEHHHHH
T ss_conf 897643777
No 69
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=74.17 E-value=5.7 Score=20.58 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHH---------HCCCEEEECCCCCHHHHHHHHCC--------CCCCEEEECHHHCC
Q ss_conf 431124554467999999633224---------16430886277898789999668--------98968897434358
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEE---------GQKMRILYGGSVDVANAEDFSLI--------ENIDGLLVGGASLQ 239 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~---------~~~i~ilYGGSV~~~N~~~l~~~--------~~iDG~LVG~ASl~ 239 (264)
|+.-+..++.....+.|.+.|+.. .++++++||.+++.+.+++++.. .+| -|=+||+.|.
T Consensus 293 PDSGDpv~iv~~~l~~L~~~FG~t~N~KGYKVL~~~vrvIqGDgI~~~~i~~Il~~l~~~G~sa~Ni-~FG~Gg~llQ 369 (462)
T PRK09198 293 PDSGDPVDIICGALELLDDIFGSTVNSKGYKVLNKHVGLIQGDGITLERIEAILEALKAKGFAADNI-VFGMGGALLQ 369 (462)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCE-EEECCHHHHC
T ss_conf 7999837779999999999849710577526047642168558739999999999999759864243-5511534430
No 70
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=74.04 E-value=3.5 Score=21.88 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=27.5
Q ss_pred CCCEEEECCC-CCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 6430886277-898789999668989688974343588
Q gi|254780197|r 204 QKMRILYGGS-VDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 204 ~~i~ilYGGS-V~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
..++|+=-|. .+++-+.++++. ..||+.|||++|.-
T Consensus 190 ~~i~VigNGDI~s~eda~~~~~~-G~DgVMIgRgAL~n 226 (233)
T cd02911 190 TELFIIGNNSVTTIESAKEMFSY-GADMVSVARASLPE 226 (233)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH-CCCEEEECHHHCCC
T ss_conf 79879980896999999999985-99999973875568
No 71
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.61 E-value=8 Score=19.64 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCH----HHHHHC
Q ss_conf 2067775407310010420002213579999999999998334747998165520333498000111002----221000
Q gi|254780197|r 81 ISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQL----DCSLPS 156 (264)
Q Consensus 81 iSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql----~~~l~~ 156 (264)
=.++.+-+.|++.|+||-.- -++-+.+.+-.+. .+=++++.+.- +...-..+=.+++. ...++.
T Consensus 89 e~i~~~l~~G~~rViigT~a-----~~~~~~l~~~~~~---f~~~Ivv~iD~----~~~~v~~~GW~~~s~~~~~d~~~~ 156 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKG-----IQDTDWLKEMAHT---FPGRIYLSVDA----YGEDIKVNGWEEDTELNLFSFVRQ 156 (234)
T ss_pred HHHHHHHHCCCCEEEECCCC-----CCCHHHHHHHHHH---CCCCEEEEEEC----CCCEEEECCCCEECCCCHHHHHHH
T ss_conf 99999997689999988813-----0286999999986---66776871202----385454457514258679999999
Q ss_pred CCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCH-HHHHHHHCCCCCCEEEECH
Q ss_conf 000134113205135304557643112455446799999963322416430886277898-7899996689896889743
Q gi|254780197|r 157 EFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDV-ANAEDFSLIENIDGLLVGG 235 (264)
Q Consensus 157 ~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~-~N~~~l~~~~~iDG~LVG~ 235 (264)
.....---|-|--|=-=||-+=|+.+.++++.+. .++||++.|.|+. +..+.+.+. +++|+.||+
T Consensus 157 ~~~~g~~~il~TdI~rDGtl~G~n~el~~~i~~~-------------~~~pvIaSGGv~sl~Di~~L~~~-gv~GvIvGk 222 (234)
T PRK13587 157 LSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-------------TTIPVIASGGIRHQQDIQRLASL-NVHAAIIGK 222 (234)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHHC-CCCEEEEEE
T ss_conf 9743987899840266574557999999999976-------------79999998998999999999988-998999997
Q ss_pred HHCCH
Q ss_conf 43588
Q gi|254780197|r 236 ASLQH 240 (264)
Q Consensus 236 ASl~~ 240 (264)
|=.+-
T Consensus 223 AlYeg 227 (234)
T PRK13587 223 AAHQA 227 (234)
T ss_pred ECCCC
T ss_conf 50178
No 72
>PRK13115 consensus
Probab=73.35 E-value=8.1 Score=19.61 Aligned_cols=123 Identities=23% Similarity=0.249 Sum_probs=66.4
Q ss_pred CCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCH-HHHCCCCCCCCCCCHHHHHHCCC
Q ss_conf 12067775407310010420002213579999999999998334747998165520-33349800011100222100000
Q gi|254780197|r 80 DISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDE-EYRSGRTFEVLQKQLDCSLPSEF 158 (264)
Q Consensus 80 eiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~-e~~~~~~~~~l~~Ql~~~l~~~~ 158 (264)
+--...+++.|++.+||=-- -+-|+++. ...+.++||.+|.-|-=+-. +| +..+.
T Consensus 117 e~F~~~~~~~GvdGvIipDL----P~eE~~~~----~~~~~~~gi~~I~LvaPtt~~eR------------i~~i~---- 172 (269)
T PRK13115 117 DRFARDLAAAGGAGLITPDL----IPDEAGEW----LAASERHGLDRIFLVAPSSTPER------------LAETV---- 172 (269)
T ss_pred HHHHHHHHHCCCCEEECCCC----CHHHHHHH----HHHHHHCCEEEEEEECCCCCHHH------------HHHHH----
T ss_conf 99999999739980764789----97899999----99998658128998589998899------------99998----
Q ss_pred CCCCCEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECH
Q ss_conf 0134113205135304-557-6431124554467999999633224164308862778-987899996689896889743
Q gi|254780197|r 159 KSSVPVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGG 235 (264)
Q Consensus 159 ~~~~~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ 235 (264)
....-.| |=- -.-| ||. ..-++++.+..+.||+. .++||.-|=.+ +++-++++.+. .||+-||+
T Consensus 173 ~~a~GFI-Y~V-s~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~~~~~~~~--aDGvIVGS 239 (269)
T PRK13115 173 EASRGFV-YAA-STMGVTGARDAVSSAAPELVARVRAA---------SDIPVCVGLGVSSAAQAAEIAGY--ADGVIVGS 239 (269)
T ss_pred HCCCCCE-EEE-ECCCCCCCCCCCCHHHHHHHHHHHHH---------CCCCCEEECCCCCHHHHHHHHHH--CCEEEECH
T ss_conf 4488808-997-54545677644417799999999971---------79981797278999999999802--99999868
Q ss_pred HHCC
Q ss_conf 4358
Q gi|254780197|r 236 ASLQ 239 (264)
Q Consensus 236 ASl~ 239 (264)
|-.+
T Consensus 240 a~V~ 243 (269)
T PRK13115 240 ALVS 243 (269)
T ss_pred HHHH
T ss_conf 9999
No 73
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.56 E-value=7.8 Score=19.72 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH------HHHHHHHHHHHH
Q ss_conf 67999999633224164308862778987899996689896889743435889------999999999999
Q gi|254780197|r 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE------LFLKIVEIVERV 253 (264)
Q Consensus 189 ~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~------~F~~Ii~~~~~~ 253 (264)
.++|... .- ..+++++==|.|+++|+.++++.+++-. |||..|-++ +|.+|-+.+++.
T Consensus 144 ~~lkal~-~p----~p~i~~~ptGGV~~~N~~~yl~~~~v~a--vgGS~l~~~~~v~~~d~~~I~~~a~~~ 207 (212)
T PRK05718 144 KMLKALA-GP----FSDVRFCPTGGISPANYRDYLALPNVLC--IGGSWMVPKDAIENGDWDRITRLAREA 207 (212)
T ss_pred HHHHHHH-CC----CCCCEEEECCCCCHHHHHHHHCCCCEEE--EECHHHCCHHHHHCCCHHHHHHHHHHH
T ss_conf 9999985-65----8998288659989878999981788699--987352899998648999999999999
No 74
>PRK13114 consensus
Probab=72.52 E-value=8.5 Score=19.48 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=38.0
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 557-6431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 175 TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 175 tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
||. .+.++.+.+..+.||+. .++|+.-|=.+ +++-++.+... .||+-||+|-.+
T Consensus 179 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~~~~~~~~--ADGvIVGSaiVk 234 (266)
T PRK13114 179 TGMQQAAQASIEAAVARIKAA---------TDLPVAVGFGVRTPEQAAAIARV--ADGVVVGSAFVD 234 (266)
T ss_pred CCCCCCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCHHHHHHHHHC--CCEEEECHHHHH
T ss_conf 677656658899999999970---------79986998366989999999800--999998199999
No 75
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=72.21 E-value=2.8 Score=22.49 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=34.7
Q ss_pred HHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCC-CCCCCEEEECHHHHHC-CCC
Q ss_conf 9999833474799816552033349800011100222100000-0134113205135304-557
Q gi|254780197|r 116 VKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEF-KSSVPVIAYEPIWAIG-TGR 177 (264)
Q Consensus 116 ~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~-~~~~~iIAYEPvWAIG-tG~ 177 (264)
+++||+.||.||+|| ++-+|..-+-.+|+..=++ .+.+.. ...+ +=.==|||.| .|.
T Consensus 115 L~KAL~~gLkPIVVi--NKiDrp~ARP~eV~d~vFD-LF~~LgA~deQ--LDFP~vYASa~~G~ 173 (609)
T TIGR01394 115 LKKALELGLKPIVVI--NKIDRPSARPDEVVDEVFD-LFIELGADDEQ--LDFPIVYASARAGW 173 (609)
T ss_pred HHHHHHCCCCEEEEE--CCCCCCCCCHHHHHHHHHH-HHHHCCCCCCC--CCHHHHHHHHCCCC
T ss_conf 999995689369997--1347887883788757878-88853888001--01256766523672
No 76
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=72.18 E-value=6.3 Score=20.27 Aligned_cols=133 Identities=17% Similarity=0.098 Sum_probs=67.2
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHCCCCCCCCC---CCHH----HH
Q ss_conf 0677754073100104200022135799999999999983347-47998165520333498000111---0022----21
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL-YPIVCIGETDEEYRSGRTFEVLQ---KQLD----CS 153 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l-~pIlCiGE~~~e~~~~~~~~~l~---~Ql~----~~ 153 (264)
.+..|-+.|++.+++|-.- -++.+.+.+= +...|= .+++++- .... ..+++.-++. ++.. ..
T Consensus 88 ~~~~ll~~GadkViigs~a-----~~~p~~i~~~---~~~fG~q~IvvsiD-~k~~-~~~~~~v~~~g~~~~t~~~~~~~ 157 (253)
T PRK01033 88 QAKRIFSLGVEKVSISTAA-----LEDPKLITEA---AEIYGSQSVVVSID-VKKR-LFGRYDVYTHNGTKKTGLDPVEF 157 (253)
T ss_pred HHHHHHHCCCCEEEECCHH-----HHCCHHHHHH---HHHCCCCCEEEEEE-EECC-CCCCEEEEEECCCCCCCCCHHHH
T ss_conf 8899986798669999878-----6374165789---98779976999999-8248-77834789867953678558999
Q ss_pred HHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEE-CCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 000000134113205135304557643112455446799999963322416430886-2778987899996689896889
Q gi|254780197|r 154 LPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILY-GGSVDVANAEDFSLIENIDGLL 232 (264)
Q Consensus 154 l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilY-GGSV~~~N~~~l~~~~~iDG~L 232 (264)
+....+..--=|-|-=|=-=||..=++.+-++++.+. -++|+++ ||-=+.+.+.++++..++||+.
T Consensus 158 ~~~~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~~-------------~~ipiIasGGi~s~~di~~l~~~~~v~gv~ 224 (253)
T PRK01033 158 AKQAEELGAGEIVLNSIDRDGVMKGYDLELIKKISSA-------------VKIPVTALGGAGSLDDIADLIQEAGASAAA 224 (253)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH-------------CCCCEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9998746977999987848897668799999999987-------------899999978989999999999867973997
Q ss_pred ECHHH
Q ss_conf 74343
Q gi|254780197|r 233 VGGAS 237 (264)
Q Consensus 233 VG~AS 237 (264)
+|++-
T Consensus 225 ~gs~F 229 (253)
T PRK01033 225 AGSLF 229 (253)
T ss_pred EEEEE
T ss_conf 83168
No 77
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=71.66 E-value=8.9 Score=19.36 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=49.0
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCE-EEECCCCCHHHHHHHHCCCCCCEE--EECH---------
Q ss_conf 5135304557643112455446799999963322416430-886277898789999668989688--9743---------
Q gi|254780197|r 168 EPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMR-ILYGGSVDVANAEDFSLIENIDGL--LVGG--------- 235 (264)
Q Consensus 168 EPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~-ilYGGSV~~~N~~~l~~~~~iDG~--LVG~--------- 235 (264)
.++|.+.+|..|+|.++.+++..||+. +++ |++=-++++..++.+...-.-.|+ .+|+
T Consensus 183 ~~~~~~~~~~epsp~~l~~li~~ik~~----------~v~~If~E~~~~~k~~~~i~~~~~a~~~~~~~~~~l~~d~~~~ 252 (276)
T cd01016 183 KGLQGISTDSEAGLRDINELVDLIVER----------KIKAIFVESSVNQKSIEALQDAVKARGHDVQIGGELYSDAMGE 252 (276)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 314246888888979999999999983----------9999998489995999999999833574243167123236788
Q ss_pred HHCCHHHHHHHHHHHHHHH
Q ss_conf 4358899999999999999
Q gi|254780197|r 236 ASLQHELFLKIVEIVERVY 254 (264)
Q Consensus 236 ASl~~~~F~~Ii~~~~~~~ 254 (264)
..-..+++.++.+.=-++.
T Consensus 253 ~~~~~~tY~~~M~~N~~~l 271 (276)
T cd01016 253 EGTSEGTYIGMFKHNVDTI 271 (276)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 8998777899999999999
No 78
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=71.11 E-value=7.4 Score=19.86 Aligned_cols=81 Identities=19% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999983347479981655203334980001110022210000001341132051353045576431124554467999
Q gi|254780197|r 114 SKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRR 193 (264)
Q Consensus 114 ~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~ 193 (264)
+|..+++.+.|.|++.||- .|-|..++ +|++..|..-.--+.-+. ..++++..++...|-+
T Consensus 8 rk~LR~~AH~LkPvv~IGk------~Glt~~vi-~ei~~aL~~hELIKikv~------------~~~~~~~~~~~~~i~~ 68 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGS------NGLTEGVL-AEIEQALEHHELIKVKIA------------TEDRETKTLIVEAIVR 68 (97)
T ss_pred HHHHHHHHCCCCCEEEECC------CCCCHHHH-HHHHHHHHHCCCEEEEEC------------CCCHHHHHHHHHHHHH
T ss_conf 9999986088998498778------98999999-999999985774799865------------8997899999999999
Q ss_pred HHHHHCCHHHCCCEEEECCC
Q ss_conf 99963322416430886277
Q gi|254780197|r 194 ILLDRFPEEGQKMRILYGGS 213 (264)
Q Consensus 194 ~l~~~~~~~~~~i~ilYGGS 213 (264)
.....+-..-.++-|||==|
T Consensus 69 ~t~a~~Vq~IG~~~vlYR~~ 88 (97)
T PRK10343 69 ETGACNVQVIGKTLVLYRPT 88 (97)
T ss_pred HHCCEEHHHCCCEEEEECCC
T ss_conf 86999640238899998679
No 79
>PRK13134 consensus
Probab=70.96 E-value=9.2 Score=19.26 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=34.5
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHH
Q ss_conf 557-64311245544679999996332241643088627789-8789999668989688974343
Q gi|254780197|r 175 TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 175 tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~AS 237 (264)
||. ..-+.++.+..+.||+. .++||+.|=.++ ++.++.+.. ..||+-||+|=
T Consensus 184 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~--~aDGvIVGSai 237 (257)
T PRK13134 184 TGVRDGLPVEVADTLARARQC---------FSIPVALGFGISRPAQLEGLSH--PPDAVIFGSAL 237 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCHHHHHHHHC--CCCEEEECHHH
T ss_conf 687645528899999999970---------6998799806799999999970--39999987999
No 80
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=70.87 E-value=8.1 Score=19.59 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHH
Q ss_conf 76431124554467999999633224164308862778987899996689896889743435889999999999
Q gi|254780197|r 177 RVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIV 250 (264)
Q Consensus 177 ~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~ 250 (264)
.+.+...+.++++.+|+. ..+++|+-||.--....++++..+.+|-+.+|=.=.. |.++++..
T Consensus 48 ~~~~~~~~~~~~~~~k~~--------~p~~~iv~GG~h~t~~p~~~l~~~~~D~vv~GEGE~t---~~~ll~~l 110 (127)
T cd02068 48 MTSAIYEALELAKIAKEV--------LPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEET---FLKLLEEL 110 (127)
T ss_pred EHHHHHHHHHHHHHHHHH--------CCCCEEEECCCCCCCCHHHHHHCCCCCEEEECCHHHH---HHHHHHHH
T ss_conf 688999999999999997--------8997899859874549999970758778996868999---99999999
No 81
>PRK13123 consensus
Probab=69.01 E-value=10 Score=19.00 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=36.9
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 557-6431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 175 TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 175 tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
||. ..-+.++.+..+.||+. .++||.-|=.+ +++.++++.+ ..||+-||+|=.
T Consensus 178 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~--~aDGvIVGSaiv 232 (256)
T PRK13123 178 TGKRGNYRDDLDSHLEKLKSI---------AHIPVLAGFGISTLEDVERFNA--VCDGVIVGSKIV 232 (256)
T ss_pred CCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHH--HCCEEEEHHHHH
T ss_conf 676533338899999999856---------8998799768899999999971--399999729999
No 82
>PRK13126 consensus
Probab=68.97 E-value=10 Score=19.00 Aligned_cols=128 Identities=18% Similarity=0.122 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCC
Q ss_conf 21206777540731001042000221357999999999999833474799816552033349800011100222100000
Q gi|254780197|r 79 GDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEF 158 (264)
Q Consensus 79 GeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~ 158 (264)
++--....++.|++.+|+--- --|..+....-...+.++|+.+|+-+=-+-.++. ++ .+.
T Consensus 84 ~~~f~~~~~~aGvdGlIipDL-----P~e~~ee~~~~~~~~~~~gl~~I~lv~ptt~~~r-----------i~----~i~ 143 (237)
T PRK13126 84 PAELFETAAEVGARGVLAPDL-----LIDFPGDLERYLELSREYGLAPSFFIPSKFPHRL-----------LR----RLA 143 (237)
T ss_pred HHHHHHHHHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHH-----------HH----HHH
T ss_conf 999999998749973883688-----8778177899999999769977997389983999-----------99----999
Q ss_pred CCCCCEEEECHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHH
Q ss_conf 0134113205135304-5576431124554467999999633224164308862778-9878999966898968897434
Q gi|254780197|r 159 KSSVPVIAYEPIWAIG-TGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGA 236 (264)
Q Consensus 159 ~~~~~iIAYEPvWAIG-tG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~A 236 (264)
....-.| | +-.-| ||.. .+.+.++-...+|+.. .++||..|=.+ +++.+.++++ ...||+-||+|
T Consensus 144 ~~s~gfi-Y--vs~~gvTG~~-~~~~~~~~i~~ir~~~--------~~~Pv~vGFGI~t~e~~~~~~~-~~aDGvIVGSa 210 (237)
T PRK13126 144 SLEPDFI-Y--LGLYAATGIE-LPVYVERNVKTIRGLA--------GDVYLVAGFAIDSPEKAARLVK-AGADGVVVGTA 210 (237)
T ss_pred HHCCCEE-E--EEEECCCCCC-CHHHHHHHHHHHHHHC--------CCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHH
T ss_conf 8589879-9--9865266764-1567999999999857--------8997799945399999999986-48999998789
Q ss_pred HCC
Q ss_conf 358
Q gi|254780197|r 237 SLQ 239 (264)
Q Consensus 237 Sl~ 239 (264)
-.+
T Consensus 211 iV~ 213 (237)
T PRK13126 211 FMR 213 (237)
T ss_pred HHH
T ss_conf 999
No 83
>PRK13117 consensus
Probab=68.61 E-value=10 Score=18.95 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=61.8
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-CHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 677754073100104200022135799999999999983347479981655-2033349800011100222100000013
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGET-DEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~-~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
...+++.|++.+||=--= +-|+++. ...+.++||.+|+-+--+ -++| +..+. ...
T Consensus 115 ~~~~~~aGvdGvIipDLP----~eE~~~~----~~~~~~~gl~~I~lv~Ptt~~~R------------i~~i~----~~a 170 (268)
T PRK13117 115 YARCAEAGVDSVLIADVP----VEESAPF----RQAAKKHGIAPIFICPPNADDDT------------LRQIA----SLG 170 (268)
T ss_pred HHHHHHCCCCEEEECCCC----HHHHHHH----HHHHHHCCCCEEEEECCCCCHHH------------HHHHH----HHC
T ss_conf 999997698779857999----7885899----99998679837998479999999------------99999----747
Q ss_pred CCEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCH-HHHHHHHCCCCCCEEEECHHHC
Q ss_conf 4113205135304-557-643112455446799999963322416430886277898-7899996689896889743435
Q gi|254780197|r 162 VPVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDV-ANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 162 ~~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~-~N~~~l~~~~~iDG~LVG~ASl 238 (264)
.- +-|=-. --| ||. ...++++.+..+.||+. .++||.-|=.|+. +-+++.++ ...||+-||+|-.
T Consensus 171 ~G-FiY~vs-~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~-~~aDGvIVGSaiV 238 (268)
T PRK13117 171 RG-YTYLLS-RAGVTGAENKAAAPLNHLVEKLKEY---------NAPPPLQGFGISEPEQVKAAIK-AGAAGAISGSAIV 238 (268)
T ss_pred CC-EEEEEE-CCCCCCCCCCCCHHHHHHHHHHHHC---------CCCCEEEEECCCCHHHHHHHHH-CCCCEEEECHHHH
T ss_conf 98-599983-6777889866627799999999964---------7998699837899999999986-3899899878999
Q ss_pred C
Q ss_conf 8
Q gi|254780197|r 239 Q 239 (264)
Q Consensus 239 ~ 239 (264)
+
T Consensus 239 ~ 239 (268)
T PRK13117 239 K 239 (268)
T ss_pred H
T ss_conf 9
No 84
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=68.48 E-value=7.6 Score=19.79 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=64.2
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHCCCCCCC---CCCCH----HHH
Q ss_conf 06777540731001042000221357999999999999833474-79981655203334980001---11002----221
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDEEYRSGRTFEV---LQKQL----DCS 153 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~e~~~~~~~~~---l~~Ql----~~~ 153 (264)
.++.+-+.|++.+++|-.= + ++.+.+.+ +. ...|=. +++++- .......+.+.-+ -+++. ...
T Consensus 88 ~~~~ll~~GadkViigs~a----~-~~p~~~~~-~~--~~~G~q~ivvsiD-~k~~~~~~~~~v~~~g~~~~~~~~~~~~ 158 (232)
T TIGR03572 88 DAKKLLSLGADKVSINTAA----L-ENPDLIEE-AA--RRFGSQCVVVSID-VKKELDGSDYKVYSDNGRRATGRDPVEW 158 (232)
T ss_pred HHHHHHHCCCCEEEECHHH----H-HCCHHHHH-HH--HHCCCCCEEEEEE-EECCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 9999997699689934545----2-19357789-99--9869945899999-8416778727999667763579879999
Q ss_pred HHCCCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCE
Q ss_conf 000000--13411320513530455764311245544679999996332241643088627789-878999966898968
Q gi|254780197|r 154 LPSEFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDG 230 (264)
Q Consensus 154 l~~~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG 230 (264)
+....+ ...++ |--|=-=||..=++.+.++++ ++. .++|++++|.|+ .+...++++...+||
T Consensus 159 i~~~~~~g~geii--~tdI~~DG~~~G~d~~l~~~i----~~~---------~~~piiasGGi~~~~di~~l~~~~~~~g 223 (232)
T TIGR03572 159 AREAEQLGAGEIL--LNSIDRDGTMKGYDLELIKTV----SDA---------VSIPVIALGGAGSLDDLVEVALEAGASA 223 (232)
T ss_pred HHHHHHCCCCEEE--EEEECCCCCCCCCCHHHHHHH----HHH---------CCCCEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 9998735998999--988857685676899999999----986---------8999999889899999999998589819
Q ss_pred EEECHHH
Q ss_conf 8974343
Q gi|254780197|r 231 LLVGGAS 237 (264)
Q Consensus 231 ~LVG~AS 237 (264)
+.+|.+-
T Consensus 224 v~~gs~f 230 (232)
T TIGR03572 224 VAAASLF 230 (232)
T ss_pred EEEEECC
T ss_conf 9972114
No 85
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=68.47 E-value=10 Score=18.93 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=64.5
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCH-HHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520-33349800011100222100000013
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDE-EYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~-e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
...+++.|++.+||=--= +-|+++.. ..+.++|+.+|.-|--+-. +| +..+.+. .+
T Consensus 107 ~~~~~~~GvdGvIipDLP----~eE~~~~~----~~~~~~~l~~I~lvsPtt~~~R------------i~~i~~~---s~ 163 (258)
T pfam00290 107 YAQAAEAGVDGLIIPDLP----PEEADPLR----EAAEKHGIDLIFLVAPTTSDER------------LKTISEA---AS 163 (258)
T ss_pred HHHHHHCCCCEEECCCCC----HHHHHHHH----HHHHHCCCCEEEEECCCCCHHH------------HHHHHHH---CC
T ss_conf 999997599778707999----88999999----9998458435888458881999------------9999960---89
Q ss_pred CCEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 4113205135304-557-6431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 162 VPVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 162 ~~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
- .| |= +---| ||. ...+.++.+..+.||+. .++||+-|=.+ +++-++.+. ...||+-||+|-.
T Consensus 164 g-Fi-Y~-vs~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~--~~aDGvIVGSaiv 229 (258)
T pfam00290 164 G-FV-YL-VSRAGVTGARNAFNAQLDELVERLKKY---------TNVPVAVGFGISTPEHVKKIA--AGADGVIVGSAIV 229 (258)
T ss_pred C-EE-EE-EECCCCCCCCCCCCHHHHHHHHHHHHC---------CCCCEEEEECCCCHHHHHHHH--CCCCEEEECHHHH
T ss_conf 8-08-99-853445676555638899999999860---------699848994579999999998--1599999849999
Q ss_pred C
Q ss_conf 8
Q gi|254780197|r 239 Q 239 (264)
Q Consensus 239 ~ 239 (264)
+
T Consensus 230 ~ 230 (258)
T pfam00290 230 D 230 (258)
T ss_pred H
T ss_conf 9
No 86
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=68.31 E-value=7.9 Score=19.66 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCCHHHHHH
Q ss_conf 554467999999633224164308862778-9878999966898968897434358899999
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQHELFLK 245 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~ 245 (264)
....+.||+.+ ++||+-.|++ +|+.+++++.....|-+.+||+.|---+|.+
T Consensus 294 ~~~a~~ik~~~---------~iPvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~~iadP~~v~ 346 (382)
T cd02931 294 LPYCKALKEVV---------DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVN 346 (382)
T ss_pred HHHHHHHHHHC---------CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHH
T ss_conf 89999999873---------998899689699999999998699654362289886935999
No 87
>pfam03982 DAGAT Diacylglycerol acyltransferase. The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT).
Probab=67.67 E-value=5.1 Score=20.87 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=42.0
Q ss_pred HHHHHHC--CCCEEEECCCCCHHHH----CCCCCCCCCCCHHHHHH---------CCC--------CC-CC-CEEEECHH
Q ss_conf 9999833--4747998165520333----49800011100222100---------000--------01-34-11320513
Q gi|254780197|r 116 VKSACNA--GLYPIVCIGETDEEYR----SGRTFEVLQKQLDCSLP---------SEF--------KS-SV-PVIAYEPI 170 (264)
Q Consensus 116 ~~~al~~--~l~pIlCiGE~~~e~~----~~~~~~~l~~Ql~~~l~---------~~~--------~~-~~-~iIAYEPv 170 (264)
++.|++. .|.|++|.||+.--.. .+.....++..+...+. ++. +. .. .++-=+|+
T Consensus 172 VKlAL~~Ga~LVPVysFGEn~ly~~~~~p~~s~~~~~q~~~~k~~gf~~plf~GRg~f~~~~~GllP~r~Pi~~VVG~PI 251 (297)
T pfam03982 172 VRIALKTGADLVPVYSFGENDVYKQWENPEGSRLRWVQEKLKRAIGFSPPIFHGRGVFNSYTFGLLPFRKPITTVVGAPI 251 (297)
T ss_pred HHHHHHHCCCCCCEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 99999819973305642674021003689873899999999985463433687312135787776677885389971684
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 5304557643112455446799999963322
Q gi|254780197|r 171 WAIGTGRVPAVVDLEKIHSFVRRILLDRFPE 201 (264)
Q Consensus 171 WAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~ 201 (264)
----+ ..||.|+|++.|+.--+.|.++|.+
T Consensus 252 ~V~k~-~~Pt~e~Vd~~H~~Yi~~L~~LFe~ 281 (297)
T pfam03982 252 EVTKT-LNPTQEQIDELHGQYMEALRELFEE 281 (297)
T ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58888-9969999999999999999999999
No 88
>PRK13121 consensus
Probab=66.28 E-value=11 Score=18.66 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=35.7
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 557-6431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 175 TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 175 tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
||. ....+++.+..+.||+. .++||.-|=.+ +++-++.+... .||+-||+|=.+
T Consensus 183 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~~~~v~~~--ADGvIVGSaiV~ 238 (265)
T PRK13121 183 TGAATLDVSSVAAKLPAIRSH---------VPLPVGVGFGIRDAATARAVAEV--ADAVVIGSRLVQ 238 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHHC--CCEEEECHHHHH
T ss_conf 677756628899999999854---------79985997688989999999811--999998489999
No 89
>PRK13119 consensus
Probab=66.19 E-value=12 Score=18.65 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 5576-431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 175 TGRV-PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 175 tG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
||.. ...+++.+..+.||+. -++||.-|=.+ +++-++.+.+ ..||+-||+|-.
T Consensus 181 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~--~aDGvIVGSaiV 235 (261)
T PRK13119 181 TGAASLDTDEVSRKIEYLHQY---------IDIPIGVGFGISNAESARKIGR--VADAVIVGSRIV 235 (261)
T ss_pred CCCCCCCHHHHHHHHHHHHHC---------CCCCEEEEECCCCHHHHHHHHC--CCCEEEECHHHH
T ss_conf 687755548899999999863---------6998799836599999999873--499999828999
No 90
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=65.93 E-value=4.9 Score=20.96 Aligned_cols=158 Identities=18% Similarity=0.314 Sum_probs=78.3
Q ss_pred HHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE--C
Q ss_conf 99973257631022201222333433212067775407310010420002213579999999999998334747998--1
Q gi|254780197|r 53 SSRLCKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVC--I 130 (264)
Q Consensus 53 ~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlC--i 130 (264)
++..++...-.+|.-.- -.-+||-|| +.-.|-+|++|- .|. -.-+...+-..+..+...+..||+= +
T Consensus 8 fK~~L~~g~~qiGlw~~---l~~p~~~Ei----~A~aGfDwl~iD-~EH---apnd~~sl~~qL~a~~~~~~~pvVR~p~ 76 (255)
T COG3836 8 FKAALAAGRPQIGLWLS---LPDPYMAEI----LATAGFDWLLID-GEH---APNDLQSLLHQLQAVAAYASPPVVRPPV 76 (255)
T ss_pred HHHHHHCCCCEEEEEEC---CCCHHHHHH----HHHCCCCEEEEC-CCC---CCCCHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 99998579966875215---885799999----985688879962-532---6765899999998753259998664888
Q ss_pred CCCCHHHHCCCCCCCCCCCHHHHHHCC--------CCCCCC--EEEECHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 655203334980001110022210000--------001341--132051353045576-431124554467999999633
Q gi|254780197|r 131 GETDEEYRSGRTFEVLQKQLDCSLPSE--------FKSSVP--VIAYEPIWAIGTGRV-PAVVDLEKIHSFVRRILLDRF 199 (264)
Q Consensus 131 GE~~~e~~~~~~~~~l~~Ql~~~l~~~--------~~~~~~--iIAYEPvWAIGtG~~-a~~~~i~~~~~~Ir~~l~~~~ 199 (264)
|++.. +++-|+.+...+ .+...+ -.-|-|.=-=|-|-. +....-.. |-+++..-
T Consensus 77 g~~~~----------Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~----i~dyl~~A- 141 (255)
T COG3836 77 GDPVM----------IKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGR----IADYLAQA- 141 (255)
T ss_pred CCHHH----------HHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC----HHHHHHHC-
T ss_conf 98899----------9999621631366403589999999999614899773454415566652387----78999853-
Q ss_pred CHHHCCCEEE--ECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 2241643088--627789878999966898968897434358
Q gi|254780197|r 200 PEEGQKMRIL--YGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 200 ~~~~~~i~il--YGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
.+.+-+| ----.-.+|...|+..+.|||+|||-|-|.
T Consensus 142 ---n~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLa 180 (255)
T COG3836 142 ---NDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLA 180 (255)
T ss_pred ---CCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf ---603088878734888977888871578776987778879
No 91
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=65.60 E-value=12 Score=18.58 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCEEEECHHHH---------------HCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCC-EEEECCCCCHHHHHHHHC
Q ss_conf 341132051353---------------0455764311245544679999996332241643-088627789878999966
Q gi|254780197|r 161 SVPVIAYEPIWA---------------IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKM-RILYGGSVDVANAEDFSL 224 (264)
Q Consensus 161 ~~~iIAYEPvWA---------------IGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i-~ilYGGSV~~~N~~~l~~ 224 (264)
.+.+++|.|.|. .++|..|++.++.++...||+. ++ -|++--.+++.-++.+..
T Consensus 179 ~~~~v~~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~----------~v~~If~e~~~~~k~a~~ia~ 248 (286)
T cd01019 179 TKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEK----------GATCVFAEPQFHPKIAETLAE 248 (286)
T ss_pred CCEEEEECCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHH
T ss_conf 5228985663689998669838678722467789999999999999983----------998899828989399999999
Q ss_pred CCCCCEEEE---CH-HHCCHHHHHHHHHHHHHHHHH
Q ss_conf 898968897---43-435889999999999999998
Q gi|254780197|r 225 IENIDGLLV---GG-ASLQHELFLKIVEIVERVYVD 256 (264)
Q Consensus 225 ~~~iDG~LV---G~-ASl~~~~F~~Ii~~~~~~~~~ 256 (264)
.-++.-+-+ |+ -...++.|.++.+..-+...+
T Consensus 249 e~g~~v~~ld~l~~~~~~~~~~Y~~~m~~n~~~i~~ 284 (286)
T cd01019 249 GTGAKVGELDPLGGLIELGKNSYVNFLRNLADSLAS 284 (286)
T ss_pred HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 719938996377677888740699999999999997
No 92
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=65.55 E-value=12 Score=18.57 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=39.1
Q ss_pred HHC-CCCC-CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 304-5576-431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 172 AIG-TGRV-PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 172 AIG-tG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
.-| ||.- .-++.+.+..+.||+. .++||..|=.+ +++-++++.+ -..||+-||+|-.+
T Consensus 176 ~~GvTG~~~~~~~~l~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~-~~aDGvIVGSaiV~ 236 (263)
T CHL00200 176 TTGVTGLKTELDKKLKKLIETIKKM---------TNKPIILGFGISTSEQIKQIKG-WNINGIVIGSACVQ 236 (263)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHH
T ss_conf 3655687544518799999999973---------6998487358799999999974-59999998789999
No 93
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.78 E-value=12 Score=18.48 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHC------CHHHHHHHHHHHHHH
Q ss_conf 67999999633224164308862778987899996689896889743435------889999999999999
Q gi|254780197|r 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL------QHELFLKIVEIVERV 253 (264)
Q Consensus 189 ~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl------~~~~F~~Ii~~~~~~ 253 (264)
.+||... .-| .+++++==|.|+++|+.++++...+ ++ .+|.+| ...+|..|-+.+++.
T Consensus 142 ~ylkal~-~p~----p~i~~~ptGGV~~~n~~~yl~ag~~-~v-g~Gs~l~~~~~i~~~d~~~I~~~A~~~ 205 (210)
T PRK07455 142 DYIKSLQ-GPL----GHIPLIPTGGVTLENAQAFIQAGAI-AV-GLSSQLFPKTLLAAQNWPAITQRAELL 205 (210)
T ss_pred HHHHHHH-CCC----CCCCEEECCCCCHHHHHHHHHCCCE-EE-EECHHHCCHHHHHCCCHHHHHHHHHHH
T ss_conf 9999986-548----9993887899898889999968997-99-988461898888618999999999999
No 94
>PRK13139 consensus
Probab=64.77 E-value=12 Score=18.48 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=63.7
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 06777540731001042000221357999999999999833474799816552033349800011100222100000013
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
-...+++.|++.+||=-= -+-|+++. ...+.++||.+|.-|--+-.+. . +..+.+. .+
T Consensus 112 F~~~~~~~Gv~GvIipDL----P~eE~~~~----~~~~~~~gl~~I~lvaPtt~~~-------R----i~~i~~~---a~ 169 (254)
T PRK13139 112 FIDEVADIGVKGLIVPDL----PPEQAQDY----IAQCRAKGMAPIGIYAPTSTDE-------R----MGKIAAA---AD 169 (254)
T ss_pred HHHHHHHCCCCEEECCCC----CHHHHHHH----HHHHHHCCCCEEEEECCCCCHH-------H----HHHHHHC---CC
T ss_conf 999999759985864799----97889999----9999846975799945899989-------9----9999851---69
Q ss_pred CCEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 4113205135304-557-6431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 162 VPVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 162 ~~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
- +-|=-. --| ||. ..-++++.+..+.||+. .++||..|=.+ +++-++.+. ...||+-||+|-.
T Consensus 170 g--FiY~vs-~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~v~~~~--~~aDGvIVGSaiV 235 (254)
T PRK13139 170 G--FIYCVA-RRGVTGSKTSFDEHVGAFLHRCRAA---------TPLPLAVGFGVKSAADVDYLK--GKADIAVVGSQAI 235 (254)
T ss_pred C--EEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHH--CCCCEEEECHHHH
T ss_conf 8--699996-6666798866458899999999855---------899879973779999999997--1699999888999
No 95
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=64.75 E-value=12 Score=18.48 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 4311245544679999996332241643088627789878999966898968897434358
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
.+|+++.++...+|+. ...+.+-.-|.+|++|+.++.. .+||.+=+|..-.+
T Consensus 109 ~spe~l~~~v~~l~~~--------~~~v~iEaSGgI~~~ni~~yA~-tGvD~IS~galt~s 160 (169)
T pfam01729 109 FSPEEVREAVEELDER--------AGRVLLEVSGGITLDNVLEYAK-TGVDVISVGALTHS 160 (169)
T ss_pred CCHHHHHHHHHHHHHH--------CCCEEEEECCCCCHHHHHHHHH-CCCCEEECCHHHCC
T ss_conf 9999999999999975--------8967999618999999999997-69999985864469
No 96
>PRK03220 consensus
Probab=64.53 E-value=12 Score=18.45 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 45576431124554467999999633224164308862778-987899996689896889743435889
Q gi|254780197|r 174 GTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 174 GtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
||++=++.+-+++ |++. .++|+++.|.| +.+...++.+ .++||+.+|.|-+.-+
T Consensus 185 Gt~~G~d~~l~~~----i~~~---------~~~piIasGGv~s~~di~~l~~-~g~~gv~~g~a~~~~~ 239 (257)
T PRK03220 185 GTKAGFDLEMLRA----VRAA---------VTVPVIASGGAGAVEHFAPAVA-AGADAVLAASVFHFGE 239 (257)
T ss_pred CCCCCCCHHHHHH----HHHH---------CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEHHHHHCCC
T ss_conf 6023789699999----9974---------8999899878999999999997-8997998746878899
No 97
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=63.46 E-value=8.3 Score=19.55 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=79.8
Q ss_pred EEECCHHHHHHHHHHHCCCCCCH------HHHHCCCCCCCCCCCCCC-----HHHHHHHCCCCEEECCHHCCCCCCCCHH
Q ss_conf 99689655999999732576310------222012223334332120-----6777540731001042000221357999
Q gi|254780197|r 42 AICPPATLIYESSRLCKTSSVII------GAQDCHIAEYGPYTGDIS-----ANMLADCGANFVILGHSERRIGHREDSY 110 (264)
Q Consensus 42 vi~Pp~~~L~~~~~~~~~s~I~i------gAQnv~~~~~GA~TGeiS-----a~mL~d~g~~~viiGHSERR~~~~E~d~ 110 (264)
.+.||+-.+..+.+..+ |-+ =+=|..+. ..|++ ....+++|++.|.+|-+-- -++-|.
T Consensus 35 G~TPSyG~~k~a~~~~~---ipv~~MIRPRgGdFvY~-----~~E~~iM~~DI~~~~~lG~~GVV~G~lt~---dg~iD~ 103 (241)
T COG3142 35 GLTPSYGVIKEAVELSK---IPVYVMIRPRGGDFVYS-----DDELEIMLEDIRLARELGVQGVVLGALTA---DGNIDM 103 (241)
T ss_pred CCCCCHHHHHHHHHHCC---CCEEEEEECCCCCCCCC-----HHHHHHHHHHHHHHHHCCCCCEEEEEECC---CCCCCH
T ss_conf 97887889999986369---85489970588870027-----58999999999999983998379854668---986388
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCC-CCCCCEEEECHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 999999999833474799816552033349800011100222100000-0134113205135304557643112455446
Q gi|254780197|r 111 VVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEF-KSSVPVIAYEPIWAIGTGRVPAVVDLEKIHS 189 (264)
Q Consensus 111 ~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~-~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~ 189 (264)
-.-+|+..+- .+|.+-+- ..++.+.+|.+..-.-+. ...+ |+ -+|..++.. +-..
T Consensus 104 ~~le~Li~aA-~gL~vTFH-----------rAFD~~~d~~~ale~li~~Gv~R-IL--------TsGg~~sa~---eg~~ 159 (241)
T COG3142 104 PRLEKLIEAA-GGLGVTFH-----------RAFDECPDPLEALEQLIELGVER-IL--------TSGGKASAL---EGLD 159 (241)
T ss_pred HHHHHHHHHC-CCCCEEEE-----------HHHHHCCCHHHHHHHHHHCCCCE-EE--------CCCCCCCHH---HHHH
T ss_conf 9999999870-68762431-----------66563379999999999769737-86--------478867555---6079
Q ss_pred HHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 799999963322416430886277898789999668989
Q gi|254780197|r 190 FVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENI 228 (264)
Q Consensus 190 ~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~i 228 (264)
.+++++.. .+..+.|+=||.|+++|+.+|.....+
T Consensus 160 ~l~~li~~----a~gri~Im~GaGV~~~N~~~l~~~tg~ 194 (241)
T COG3142 160 LLKRLIEQ----AKGRIIIMAGAGVRAENIAELVLLTGV 194 (241)
T ss_pred HHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999998----369879986798898999999985080
No 98
>PRK13112 consensus
Probab=63.37 E-value=13 Score=18.32 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=36.1
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 55-76431124554467999999633224164308862778-98789999668989688974343
Q gi|254780197|r 175 TG-RVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 175 tG-~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
|| +.+.++++.+..+.||+. .++||+-|=.+ +++-++++.. ..||+-||+|=
T Consensus 184 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~~~~~~~--~aDGvIVGSAi 237 (279)
T PRK13112 184 TGSALADTSAVGEAVARIKRH---------TDLPVCVGFGVKTPEQARAIAA--HADGVVVGTAI 237 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHH---------CCCCCEEEECCCCHHHHHHHHC--CCCEEEECHHH
T ss_conf 676645648899999999971---------7898767835699999999972--59999987799
No 99
>PRK06857 consensus
Probab=63.01 E-value=13 Score=18.28 Aligned_cols=58 Identities=21% Similarity=0.456 Sum_probs=38.9
Q ss_pred HHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH------HHHHHHHHHHHH
Q ss_conf 67999999633224164308862778987899996689896889743435889------999999999999
Q gi|254780197|r 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE------LFLKIVEIVERV 253 (264)
Q Consensus 189 ~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~------~F~~Ii~~~~~~ 253 (264)
.+||.+. .-| .+++++==|.|+++|+.++++.+.+ +.+||.+|-+. +|.+|-+.+++.
T Consensus 141 ~~lkal~-~p~----p~~~~~ptGGV~~~N~~~yl~~~~v--~~~gGS~l~~~~~i~~~d~~~I~~~a~~~ 204 (209)
T PRK06857 141 NMLKALL-APY----PNLQIMPTGGINPSNIKDYLAIPNV--VACGGTWMVPKKLIDNGNWDEIGRLVREV 204 (209)
T ss_pred HHHHHHH-CCC----CCCEEEECCCCCHHHHHHHHCCCCE--EEEECHHHCCHHHHHCCCHHHHHHHHHHH
T ss_conf 9999986-538----9980996489888789999859988--99989365899999728999999999999
No 100
>PRK01659 consensus
Probab=62.48 E-value=6.2 Score=20.34 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=68.5
Q ss_pred CCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHCCCCCCCCC---CC----HHH
Q ss_conf 206777540731001042000221357999999999999833474-7998165520333498000111---00----222
Q gi|254780197|r 81 ISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY-PIVCIGETDEEYRSGRTFEVLQ---KQ----LDC 152 (264)
Q Consensus 81 iSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~-pIlCiGE~~~e~~~~~~~~~l~---~Q----l~~ 152 (264)
=.+..+-+.|++.+++|-.- -++.+.+.+- +...|=. +++++-= ....+.+.+.-+.. ++ +..
T Consensus 87 e~~~~~l~~GadkViigs~a-----~~n~~~i~~~---~~~~G~q~IvvsiD~-k~~~~~~~~~i~~~g~~~~~~~~~~~ 157 (252)
T PRK01659 87 KDMKRLLRAGADKVSINSAA-----VLRPELITEG---ADHFGSQCIVVAIDA-KYDAEAGKWNVYTHGGRVDTGLDAIA 157 (252)
T ss_pred HHHHHHHHCCCCEEEECHHH-----HHCHHHHHHH---HHHCCCEEEEEEEEE-EEECCCCCEEEEECCCCCCCCCCHHH
T ss_conf 88889874488559831777-----5291532146---764686326999998-97056886899968995767777999
Q ss_pred HHHCCCC--CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEE-CCCCCHHHHHHHHCCCCCC
Q ss_conf 1000000--134113205135304557643112455446799999963322416430886-2778987899996689896
Q gi|254780197|r 153 SLPSEFK--SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILY-GGSVDVANAEDFSLIENID 229 (264)
Q Consensus 153 ~l~~~~~--~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilY-GGSV~~~N~~~l~~~~~iD 229 (264)
.+..... ... |-|--|=-=||.+=++.+.++++.+. -++|+++ ||-=+++.+.++++..++|
T Consensus 158 ~i~~~~~~g~ge--il~tdI~rDG~~~G~dl~l~~~i~~~-------------~~~PiIasGGi~~~~di~~l~~~~~v~ 222 (252)
T PRK01659 158 WAKEAVRLGAGE--ILLTSMDADGTKNGFDLRLTKAISEA-------------VSVPVIASGGAGNADHMVEVFQKTTAD 222 (252)
T ss_pred HHHHHHHCCCCE--EEEEEECCCCCCCCCCHHHHHHHHHH-------------CCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 999999769977--99998814585476898999999986-------------899999991799999999999748982
Q ss_pred EEEECHHHCCH
Q ss_conf 88974343588
Q gi|254780197|r 230 GLLVGGASLQH 240 (264)
Q Consensus 230 G~LVG~ASl~~ 240 (264)
|+.+|+|-..-
T Consensus 223 gv~~g~~~~~~ 233 (252)
T PRK01659 223 AALAASIFHYG 233 (252)
T ss_pred EEEEHHHHHCC
T ss_conf 65575477779
No 101
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=61.75 E-value=14 Score=18.13 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 433212067775407310010420002213579999999999998334747
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP 126 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~p 126 (264)
.|-|.|....+++.|+++|||-=+|...+ .|.....-++.|.++||.+
T Consensus 7 ~~Qg~idw~~~k~~Gv~fviiKateG~~~---~D~~~~~n~~~a~~aGl~v 54 (184)
T cd06525 7 NWQGNINFNAVKDSGVEVVYIKATEGTTF---VDSYFNENYNGAKAAGLKV 54 (184)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEEECCCCC---CCHHHHHHHHHHHHCCCEE
T ss_conf 86898899999977995999999739986---3857899999999849859
No 102
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=61.56 E-value=14 Score=18.11 Aligned_cols=157 Identities=12% Similarity=0.117 Sum_probs=77.4
Q ss_pred EEECCHHHHHHHHHHHCCCCCCH----HHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHH
Q ss_conf 99689655999999732576310----22201222333433212067775407310010420002213579999999999
Q gi|254780197|r 42 AICPPATLIYESSRLCKTSSVII----GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVK 117 (264)
Q Consensus 42 vi~Pp~~~L~~~~~~~~~s~I~i----gAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~ 117 (264)
.+.|++-.+..+.+... -++.+ =+.|..+.+.-=-+=.-...+++++|++.+.+|---.- ++-|....+++.
T Consensus 35 GlTPS~g~i~~~~~~~~-iPV~vMIRPR~GdF~Ys~~E~~~M~~dI~~~~~~Ga~GvV~G~L~~d---g~iD~~~~~~Li 110 (248)
T PRK11572 35 GLTPSLGVLKSVRERVT-IPVHPIIRPRGGDFCYSDGEFAAMLEDIRTVRELGFPGLVTGVLDVD---GHVDMPRMEKIM 110 (248)
T ss_pred CCCCCHHHHHHHHHHCC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC---CCCCHHHHHHHH
T ss_conf 97999999999998669-97389994269988679899999999999999869996799668899---984999999999
Q ss_pred HHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCC--CCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9983347479981655203334980001110022210000001--34113205135304557643112455446799999
Q gi|254780197|r 118 SACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKS--SVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRIL 195 (264)
Q Consensus 118 ~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~--~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l 195 (264)
.+. .++.+.+- +..+.+.++.+. +...... ++ |+ -+|..++..+ -...||+..
T Consensus 111 ~~a-~~l~vTFH-----------RAfD~~~dp~~a-le~Li~lG~~r-IL--------TSG~~~~A~~---G~~~L~~L~ 165 (248)
T PRK11572 111 AAA-GPLAVTFH-----------RAFDMCANPLNA-LKNLAELGVAR-IL--------TSGQQSDAEQ---GLSLIMELI 165 (248)
T ss_pred HHH-CCCEEEEE-----------CHHHCCCCHHHH-HHHHHHCCCCE-EE--------CCCCCCCHHH---HHHHHHHHH
T ss_conf 974-89807986-----------202214999999-99999759998-98--------8999787778---899999999
Q ss_pred HHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 96332241643088627789878999966898968897
Q gi|254780197|r 196 LDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLV 233 (264)
Q Consensus 196 ~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LV 233 (264)
.. ....+ |+=||.||++|+..|.. ..++.+=.
T Consensus 166 ~~----a~~~i-Im~GgGV~~~Ni~~~~~-tG~~eiH~ 197 (248)
T PRK11572 166 AQ----GDAPI-IMAGAGVRAENLQKFLD-AGVREVHS 197 (248)
T ss_pred HH----CCCCE-EEECCCCCHHHHHHHHH-CCCCEEEE
T ss_conf 84----49968-98789989999999997-59778973
No 103
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=61.30 E-value=8.5 Score=19.48 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=49.5
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHH----HCCCCCCEEEECHHHCCHHHHHHH
Q ss_conf 5304557643112455446799999963322416430886277898789999----668989688974343588999999
Q gi|254780197|r 171 WAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDF----SLIENIDGLLVGGASLQHELFLKI 246 (264)
Q Consensus 171 WAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l----~~~~~iDG~LVG~ASl~~~~F~~I 246 (264)
--|||+=--.-.-..|+.+.|-+.| +|=++|++=|||=|++-=-.. +...+=|=+|.-+|.||-+ |-+|
T Consensus 164 HlIsTdPk~~Dksp~EAaK~~EdvL------QAVdvP~viGGSGnpeKDPlVLEkaAEvAEGeR~lLASAnLdlD-y~ki 236 (401)
T TIGR00381 164 HLISTDPKVKDKSPKEAAKVLEDVL------QAVDVPLVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLD-YKKI 236 (401)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHH------HHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCC-HHHH
T ss_conf 4433788546887224788999876------34067757747888866757899884311362164541351345-7899
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780197|r 247 VEIVER 252 (264)
Q Consensus 247 i~~~~~ 252 (264)
++++.+
T Consensus 237 a~AA~k 242 (401)
T TIGR00381 237 ANAALK 242 (401)
T ss_pred HHHHHH
T ss_conf 999853
No 104
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=61.12 E-value=9.4 Score=19.19 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=30.0
Q ss_pred CCEEE-ECCCCCHHHHHHHHCCCCCCEEEECHHHCC-HHHHHHHH
Q ss_conf 43088-627789878999966898968897434358-89999999
Q gi|254780197|r 205 KMRIL-YGGSVDVANAEDFSLIENIDGLLVGGASLQ-HELFLKIV 247 (264)
Q Consensus 205 ~i~il-YGGSV~~~N~~~l~~~~~iDG~LVG~ASl~-~~~F~~Ii 247 (264)
+++|+ =||=.+.+.+.+.++. +||+.|||+++. |=-|.+|-
T Consensus 205 ~ipvi~NGdI~s~~~~~~~l~~--~DGVMiGRga~~nPwif~~id 247 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQH--VDGVMIGRAAYHNPYLLAEVD 247 (333)
T ss_pred CCEEEECCCCCCHHHHHHHHHC--CCEEEEHHHHHCCCHHHHHHH
T ss_conf 8718845996999999999855--996211486755997899999
No 105
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=60.39 E-value=15 Score=17.98 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 64308862778-9878999966898968897434358
Q gi|254780197|r 204 QKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 204 ~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
.++|++|+|.| +.+....+.+ -++||++||.|=++
T Consensus 181 ~~~~iiasGGv~s~~Dl~~l~~-~g~~gvivG~Al~~ 216 (228)
T PRK04128 181 GDEEFIYAGGVSSIEDVKKLAE-IGFSGAIIGKALYE 216 (228)
T ss_pred CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEEHHHHC
T ss_conf 6896898789899999999996-79989999853856
No 106
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=59.67 E-value=12 Score=18.63 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=68.4
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCHHHH-HHHHHH------HCC--CCCCHHHHHCCCCCCCCCCCCCCHHH--HHHHCCC
Q ss_conf 999999522234577119996896559-999997------325--76310222012223334332120677--7540731
Q gi|254780197|r 24 RIQKIVEGIRRNSCCIDVAICPPATLI-YESSRL------CKT--SSVIIGAQDCHIAEYGPYTGDISANM--LADCGAN 92 (264)
Q Consensus 24 ~~~~~~~~~~~~~~~veivi~Pp~~~L-~~~~~~------~~~--s~I~igAQnv~~~~~GA~TGeiSa~m--L~d~g~~ 92 (264)
.+...+..+++ ..++.+++||....+ +...+. +.+ .-+-+|||=.-..- ++--. |.-+---
T Consensus 42 ~ld~~v~~ik~-~~~~p~iLFPG~~~~Ls~~ADAvlFmSlLNS~d~yfivGaqi~aA~~-------i~~~~PrlE~Ip~A 113 (212)
T TIGR01769 42 KLDQVVKKIKE-ITNLPVILFPGSVNLLSRKADAVLFMSLLNSADTYFIVGAQIKAAVL-------IKKLQPRLEVIPTA 113 (212)
T ss_pred HHHHHHHHHHH-CCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHH-------HHHHCCCCCCCCEE
T ss_conf 78899998640-15786688278845788886598888865369973674151578999-------98727885636522
Q ss_pred CEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHH--HHCCCCCCCCCCCHHHHHH-CCCCCCCCEEEECH
Q ss_conf 00104200022135799999999999983347479981655203--3349800011100222100-00001341132051
Q gi|254780197|r 93 FVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEE--YRSGRTFEVLQKQLDCSLP-SEFKSSVPVIAYEP 169 (264)
Q Consensus 93 ~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e--~~~~~~~~~l~~Ql~~~l~-~~~~~~~~iIAYEP 169 (264)
|+++||.-+..- =-||+...- .+.+.+..+. |. +-.-.+ .+=.|
T Consensus 114 Y~iv~~G~ktav-----------------------G~vG~~~~Ip~~~~~~A~~Y~-------LAA~Y~G~~--~vYLE- 160 (212)
T TIGR01769 114 YLIVGPGGKTAV-----------------------GYVGKARLIPYDKPEIAAAYA-------LAAKYLGFK--LVYLE- 160 (212)
T ss_pred EEEECCCCCEEE-----------------------EEEEECCCCCCCCHHHHHHHH-------HHHHHHHHH--HHHHH-
T ss_conf 688758874044-----------------------652001258998666899999-------999874135--12131-
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHH
Q ss_conf 3530455764311245544679999996332241643088627789-87899996
Q gi|254780197|r 170 IWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFS 223 (264)
Q Consensus 170 vWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~ 223 (264)
=|+| |+-.--+|+++++|+.. ..++++=||... +|-|.++.
T Consensus 161 ---AGSG--As~Pv~~e~i~~~k~~~--------~~I~LIVGGGIr~~EiA~~~v 202 (212)
T TIGR01769 161 ---AGSG--ASEPVSPETISLVKKKI--------SSIPLIVGGGIRSPEIALKIV 202 (212)
T ss_pred ---CCCC--CCCCCCHHHHHHHHHHC--------CCCCEEECCCCCCHHHHHHHH
T ss_conf ---0578--66678667999999854--------897277527758889999999
No 107
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=59.36 E-value=3.8 Score=21.65 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.2
Q ss_pred HHCCCCEEECCHH
Q ss_conf 4073100104200
Q gi|254780197|r 88 DCGANFVILGHSE 100 (264)
Q Consensus 88 d~g~~~viiGHSE 100 (264)
+.-=+-+++|||-
T Consensus 62 ~~~Pd~v~~Ghta 74 (506)
T TIGR02026 62 AHRPDLVLIGHTA 74 (506)
T ss_pred HCCCCEEEECCCC
T ss_conf 2598689972655
No 108
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=59.25 E-value=15 Score=17.86 Aligned_cols=60 Identities=30% Similarity=0.337 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHH---------HCCCEEEECCCCCHHHHHHHHCC--------CCCCEEEECHHHCC
Q ss_conf 431124554467999999633224---------16430886277898789999668--------98968897434358
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEE---------GQKMRILYGGSVDVANAEDFSLI--------ENIDGLLVGGASLQ 239 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~---------~~~i~ilYGGSV~~~N~~~l~~~--------~~iDG~LVG~ASl~ 239 (264)
|+.-+..++.....+.|.+.|+.. -+.++++||-+++.+.+.+++.. .+|- |=+||+.|.
T Consensus 291 PDSGDp~~ii~~~l~~L~~~FG~t~N~KGYKvL~~~vriIqGDgI~~~~i~~Il~~l~~~G~sa~Ni~-FG~Gg~llQ 367 (407)
T cd01569 291 PDSGDPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERLKAKGFASENIV-FGMGGGLLQ 367 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCEECCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHEE-EECCHHHHC
T ss_conf 79998378899899999998487215775161477423785488699999999999997798314226-741677750
No 109
>PRK13131 consensus
Probab=59.07 E-value=15 Score=17.84 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=37.4
Q ss_pred HC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 04-557-6431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 173 IG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 173 IG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
-| ||. ...+++..+..+.||+. .++||.-|=.+ +++.++++.+. ..||+-||+|-.
T Consensus 173 ~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~~-gaDGvIVGSaiV 231 (257)
T PRK13131 173 SGVTGASHTLENDASAIIKTLKTF---------SPTPALLGFGISKKEHITNAKGM-GADGVICGSALV 231 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHHC-CCCEEEECHHHH
T ss_conf 767798643407699999999966---------89987998057988999999855-999999878999
No 110
>pfam01183 Glyco_hydro_25 Glycosyl hydrolases family 25.
Probab=58.84 E-value=13 Score=18.22 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 4332120677754073100104200022135799999999999983347479
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPI 127 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pI 127 (264)
.|-|.|....++..|+++|+|-=+|...+ .|.....-++.|.++||.+=
T Consensus 5 ~~qg~idw~~vk~~gv~fviiKateG~~~---~D~~~~~n~~~a~~~Gi~~G 53 (177)
T pfam01183 5 SYQGNIDWQKVKASGVSFVFIKATEGTDY---VDPYFSTQVANARAAGLKVG 53 (177)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEEECCCCC---CCHHHHHHHHHHHHCCCEEE
T ss_conf 56898899999977996999999669885---28778999999998699189
No 111
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=57.66 E-value=13 Score=18.25 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHC-CHH
Q ss_conf 54467999999633224164308862778987899996689896889743435-889
Q gi|254780197|r 186 KIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL-QHE 241 (264)
Q Consensus 186 ~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl-~~~ 241 (264)
.....||+.+ ++||+..|..+++.+++++....+|-+-+||+.+ ||+
T Consensus 275 ~~~~~ir~~~---------~~pvi~~G~i~~~~ae~~l~~G~~D~V~~gR~liaDP~ 322 (338)
T cd02933 275 DFLDFLRKAF---------KGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPD 322 (338)
T ss_pred HHHHHHHHHC---------CCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 7999999986---------99799969989999999998799603685299987913
No 112
>TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=55.96 E-value=4.7 Score=21.07 Aligned_cols=41 Identities=15% Similarity=0.486 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHCCHHHCCC-------EEEECCCCCHHHHHHHHCCCCC
Q ss_conf 5544679999996332241643-------0886277898789999668989
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKM-------RILYGGSVDVANAEDFSLIENI 228 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i-------~ilYGGSV~~~N~~~l~~~~~i 228 (264)
+++.++||. -.+|..+|.+| ==-|||.| |++.++|.++|+|
T Consensus 68 eel~~~Ik~--iGlYr~KAk~I~~~~~~LvE~y~GeV-P~~~~eL~~LPGV 115 (192)
T TIGR01083 68 EELEEYIKS--IGLYRNKAKNIIALCRKLVERYGGEV-PEDREELVKLPGV 115 (192)
T ss_pred HHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHCCCCC
T ss_conf 134776422--58645689999999999999818987-7553766178998
No 113
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.46 E-value=18 Score=17.47 Aligned_cols=124 Identities=20% Similarity=0.174 Sum_probs=62.6
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+++.|++.+||=--- + |-.+........+.++||.+|+-|--+-.++. ++ .+.+...
T Consensus 97 ~~~~~~~GvdGvIipDLP----~-e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~r-----------i~----~i~~~s~ 156 (247)
T PRK13125 97 LNTAKEVGARGVLFPDLL----I-DFPDELEKYVELIRRYGLAPVFFTSPKFPDRL-----------IR----RLSKLSP 156 (247)
T ss_pred HHHHHHCCCCEEEECCCC----C-CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----------HH----HHHHHCC
T ss_conf 999998599758833888----7-54678999999999769846999579981999-----------99----9998689
Q ss_pred CEEEECHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 113205135304-55764311245544679999996332241643088627789-878999966898968897434358
Q gi|254780197|r 163 PVIAYEPIWAIG-TGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 163 ~iIAYEPvWAIG-tG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
- +-| +=+-| ||. ..+..+.+....||+.. .++||..|=.++ ++-++++++ ...||+-||+|=.+
T Consensus 157 g-FvY--~~~~gvTG~-~~~~~~~~~i~~ik~~~--------~~~Pv~vGFGI~t~e~v~~~~~-~~aDGvIVGSaiVk 222 (247)
T PRK13125 157 L-FIY--LGLYPATGV-ELPVYVERNIKRVRELV--------GDVYLVAGFAIDSPEDAAKALS-AGADGVVVGTAFIR 222 (247)
T ss_pred C-EEE--EEEECCCCC-CCCCCHHHHHHHHHHHC--------CCCCEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHH
T ss_conf 7-799--994436788-77325999999999856--------9998588328799999999985-58999998789999
No 114
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=54.93 E-value=18 Score=17.41 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=27.8
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 6430886277898789999668989688974343588999999999999
Q gi|254780197|r 204 QKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIVER 252 (264)
Q Consensus 204 ~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~~~ 252 (264)
+...++.|-.-...-....+ .-+.+|...|.+..-|+.+.+|.+.+++
T Consensus 175 ~~~~~~~g~~~~~~~~~~~~-~~G~~g~~~~~~n~~Pe~~~~l~~a~~~ 222 (289)
T cd00951 175 DRLLYLGGLPTAEVFALAYL-AMGVPTYSSAVFNFVPEIALAFYAAVRA 222 (289)
T ss_pred CCCEEEECCCCCHHHHHHHH-CCCCEEEEHHHHHHHHHHHHHHHHHHHC
T ss_conf 98289858983379999998-4998498267556509999999999987
No 115
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=54.72 E-value=7.8 Score=19.70 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.6
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5304557643112455446799999
Q gi|254780197|r 171 WAIGTGRVPAVVDLEKIHSFVRRIL 195 (264)
Q Consensus 171 WAIGtG~~a~~~~i~~~~~~Ir~~l 195 (264)
-|||||.-+.++|++.+.+.+++..
T Consensus 231 TAiGTGiNa~~~Y~~~vv~~l~evt 255 (471)
T COG1027 231 TAIGTGINAPKGYIELVVKKLAEVT 255 (471)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 0114676898437999999999975
No 116
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=54.39 E-value=18 Score=17.36 Aligned_cols=136 Identities=12% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+.+.|++++. =|.|--.+ ..+-+....+.|+++=+.+-=. ...+ .+...+..+ ...
T Consensus 74 i~~~~~~g~d~it-~H~Ea~~~-------~~~~i~~Ik~~g~k~GlAlnP~-------T~i~----~~~~~l~~v--D~V 132 (210)
T PRK08005 74 LPWLAAIRPGWIF-IHAESVQN-------PSEILADIRAIGAKAGLALNPA-------TPLL----PYRYLALQL--DAL 132 (210)
T ss_pred HHHHHHCCCCEEE-EECCCCCC-------HHHHHHHHHHCCCEEEEEECCC-------CCHH----HHHHHHHCC--CEE
T ss_conf 9999972998599-93567769-------9999999997498078883799-------9879----987304007--989
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHH
Q ss_conf 11320513530455764311245544679999996332241643088627789878999966898968897434358899
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~ 242 (264)
++..-||-.+ |+ ..+.++...||+. ++.+. ...|.=-|+||.+|+..+.+ .+.|.+-+|+|-...++
T Consensus 133 LvMtV~PGf~---GQ----~Fi~~~~~KI~~~-r~~~~----~~~I~vDGGIn~~t~~~~~~-aGad~~V~GSaiF~~~d 199 (210)
T PRK08005 133 MIMTSEPDGR---GQ----QFIAAMCEKVSQS-REHFP----AAECWADGGITLRAARLLAA-AGAQHLVIGRALFTTAN 199 (210)
T ss_pred EEEEECCCCC---CC----CCCHHHHHHHHHH-HHHCC----CCCEEEECCCCHHHHHHHHH-CCCCEEEECHHHHCCCC
T ss_conf 9987789998---72----1178899999999-96287----78889978878899999998-69999997906536999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780197|r 243 FLKIVEIVER 252 (264)
Q Consensus 243 F~~Ii~~~~~ 252 (264)
...-|+..+.
T Consensus 200 ~~~~i~~lr~ 209 (210)
T PRK08005 200 YDVTLSQFTA 209 (210)
T ss_pred HHHHHHHHHC
T ss_conf 9999999863
No 117
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=54.21 E-value=3 Score=22.31 Aligned_cols=44 Identities=20% Similarity=0.130 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCHHHHH-HHCCCCEEECCHHCCCCC----CCCHHHHHHHHHHHHHCC
Q ss_conf 22333433212067775-407310010420002213----579999999999998334
Q gi|254780197|r 71 IAEYGPYTGDISANMLA-DCGANFVILGHSERRIGH----REDSYVVQSKVKSACNAG 123 (264)
Q Consensus 71 ~~~~GA~TGeiSa~mL~-d~g~~~viiGHSERR~~~----~E~d~~I~~K~~~al~~~ 123 (264)
=+++|||||-|+...=+ |+-=.. ++| ||---..-.|+.+.|+.|
T Consensus 285 GHEKGAFTGA~~~RkGRFElAdGG---------TLFLDEIGEISPaFQAKLLRVLQEG 333 (574)
T TIGR01817 285 GHEKGAFTGAVAQRKGRFELADGG---------TLFLDEIGEISPAFQAKLLRVLQEG 333 (574)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCC---------CCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 343014688875177753302788---------3200001467856888998875210
No 118
>PRK13129 consensus
Probab=54.15 E-value=19 Score=17.33 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=38.4
Q ss_pred HC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 04-557-6431124554467999999633224164308862778-9878999966898968897434358
Q gi|254780197|r 173 IG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 173 IG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
-| ||. ...++++.+..+.||+. .++|+.-|=.+ +++-++++.+. ..||+-||+|=.+
T Consensus 181 ~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~~-~ADGvIVGSaiV~ 240 (267)
T PRK13129 181 TGVTGERSQMENRVESLLQQLRQV---------TSKPIAVGFGISGPEQARQVREW-GADGAIVGSAFVK 240 (267)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH---------CCCCEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHH
T ss_conf 665676544508899999999983---------48981788447999999999854-9999998789999
No 119
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=54.03 E-value=19 Score=17.32 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 4332120677754073100104200022135799999999999983347479
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPI 127 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pI 127 (264)
.|-|.|....++.-|+++|+|-=+|-..+ .|.....-++.|.++||.+=
T Consensus 10 ~~qg~Idw~~vk~~gi~fviiKateG~~~---~D~~~~~n~~~a~~aGl~~G 58 (191)
T cd06413 10 HHQGDIDWARVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLPRG 58 (191)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEEEECCCC---CCHHHHHHHHHHHHCCCCEE
T ss_conf 88898799999977998999999708887---48689999999998799679
No 120
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=53.53 E-value=19 Score=17.27 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=58.3
Q ss_pred CCCCHHHHHHCCCCCCCCEEEECHHHH---------------HCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCC-EEE
Q ss_conf 110022210000001341132051353---------------0455764311245544679999996332241643-088
Q gi|254780197|r 146 LQKQLDCSLPSEFKSSVPVIAYEPIWA---------------IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKM-RIL 209 (264)
Q Consensus 146 l~~Ql~~~l~~~~~~~~~iIAYEPvWA---------------IGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i-~il 209 (264)
+.+++...+.... .+.+++|+|.|. +.+|..|++.++.++...||+. ++ -|+
T Consensus 152 l~~~~~~~l~~~~--~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~----------~v~~if 219 (272)
T pfam01297 152 LDAEIKAKLAPIP--GKRVITFHDAFGYFAKAYGLEQIAILGESPESEPSPADLAELIKLIKEH----------NVKVIF 219 (272)
T ss_pred HHHHHHHHHHCCC--CCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC----------CCCEEE
T ss_conf 9999998751347--6438985550699999779927540300356788999999999999984----------998999
Q ss_pred ECCCCCHHHHHHHHCCCCCCEEEE---CHHHCCHHHHHHHHHHHHHH
Q ss_conf 627789878999966898968897---43435889999999999999
Q gi|254780197|r 210 YGGSVDVANAEDFSLIENIDGLLV---GGASLQHELFLKIVEIVERV 253 (264)
Q Consensus 210 YGGSV~~~N~~~l~~~~~iDG~LV---G~ASl~~~~F~~Ii~~~~~~ 253 (264)
+-=++++..++.|.+.-++....+ .-.+-..++|.++++.--+.
T Consensus 220 ~e~~~~~~~~~~ia~~~g~~~~~~~~d~l~~~~~~~Y~~~m~~n~~~ 266 (272)
T pfam01297 220 VEPQFSPKLAETLAEETGAKVVPLYLDPLGSEGGDTYLELMRHNLDT 266 (272)
T ss_pred EECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 83899909999999996997688735788888847799999999999
No 121
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.48 E-value=19 Score=17.27 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=60.0
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCC-CCEEEECCCCC-H-HHHCCCCCCCCCCCHHHHHHCCC
Q ss_conf 067775407310010420002213579999999999998334-74799816552-0-33349800011100222100000
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG-LYPIVCIGETD-E-EYRSGRTFEVLQKQLDCSLPSEF 158 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~-l~pIlCiGE~~-~-e~~~~~~~~~l~~Ql~~~l~~~~ 158 (264)
.++.+-++|++.+++|-.= -++-+.+.+-+ ...| =.+++.+.=.. . ..-.|- .+- .-.+...+....
T Consensus 86 ~~~~~l~~Ga~kViigS~a-----~~np~~~~~~~---~~~G~~~iv~siD~~~~~~v~~~Gw-~~~-~~~~~~~i~~~~ 155 (231)
T PRK13586 86 KAERLLSYDCSAIVMSTLP-----FTNPDTFRRIV---AGIGENRVLVSVDYDDRKYVLIKGW-KEK-SMKVEDAISHVN 155 (231)
T ss_pred HHHHHHHCCCCEEEECHHH-----HHCHHHHHHHH---HHHCCCCEEEEEEECCCCEEEEECC-CCC-CCCHHHHHHHHH
T ss_conf 9999997799889976888-----76959999999---9849966899999758968998487-268-866999999999
Q ss_pred CCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 01341132051353045576431124554467999999633224164308862778987899996689896889743435
Q gi|254780197|r 159 KSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 159 ~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
....-=|=|--+=--||.+-++++ ..+.++.. ...+++=||==+.+.++++.+. ++||+++|.|=.
T Consensus 156 ~~g~~~ii~TdI~~DGt~~G~d~~----l~~~i~~~---------~~~~i~aGGi~s~~Di~~L~~~-G~~gaivG~Aly 221 (231)
T PRK13586 156 SLESLGVIFTYVCNEGTKNGIDNN----VKRYVKLV---------KGEKEYAGGIGSIQDLQKLKKM-GFDYAIVGMSFY 221 (231)
T ss_pred HCCCCEEEEEEECCHHCCCCCCHH----HHHHHHHC---------CCCCEEECCCCCHHHHHHHHHC-CCCEEEEEHHHH
T ss_conf 759988999764511203689989----99999871---------8995998688999999999867-998899997886
Q ss_pred C
Q ss_conf 8
Q gi|254780197|r 239 Q 239 (264)
Q Consensus 239 ~ 239 (264)
+
T Consensus 222 ~ 222 (231)
T PRK13586 222 A 222 (231)
T ss_pred C
T ss_conf 8
No 122
>TIGR01149 mtrG tetrahydromethanopterin S-methyltransferase, subunit G; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane.
Probab=53.24 E-value=4.2 Score=21.40 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCHH-HCCCEEEECCC
Q ss_conf 1124554467999999633224-16430886277
Q gi|254780197|r 181 VVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGS 213 (264)
Q Consensus 181 ~~~i~~~~~~Ir~~l~~~~~~~-~~~i~ilYGGS 213 (264)
.+++++=..+.-..+..++++. +.++-||||+=
T Consensus 23 LDeie~kveFv~~E~~Qr~GkkvGRDIGILYG~V 56 (72)
T TIGR01149 23 LDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLV 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 4178678878999988860761253465798899
No 123
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=53.08 E-value=13 Score=18.41 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=5.6
Q ss_pred CCCCEEEECHHHC
Q ss_conf 9896889743435
Q gi|254780197|r 226 ENIDGLLVGGASL 238 (264)
Q Consensus 226 ~~iDG~LVG~ASl 238 (264)
-+|.=++|.|-++
T Consensus 212 lgi~vi~I~RP~l 224 (241)
T PRK08057 212 LGIPVVMIARPPL 224 (241)
T ss_pred CCCEEEEEECCCC
T ss_conf 4991999968999
No 124
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=52.95 E-value=19 Score=17.21 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 431124554467999999633224164308862778987899996689896889743435
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
-+|+++.++...++.. ...+.+-=-|.++.+|+.+++. .+|| ++++||-.
T Consensus 218 msp~~l~~av~~~~~~--------~~~~~lEaSGGI~~~ni~~yA~-tGVD-~i~tsa~~ 267 (284)
T PRK06096 218 FSPQQATEIAQIAPSL--------APHCTLALTGGINLTTLKNYLD-CGIR-LFITSAPY 267 (284)
T ss_pred CCHHHHHHHHHHHHHH--------CCCEEEEEECCCCHHHHHHHHH-CCCC-EEEECCCC
T ss_conf 8999999999998721--------7977999989999999999998-0999-99828210
No 125
>pfam03328 HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family. This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Probab=52.74 E-value=16 Score=17.82 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEE--ECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 764311245544679999996332241643088--627789878999966898968897434358
Q gi|254780197|r 177 RVPAVVDLEKIHSFVRRILLDRFPEEGQKMRIL--YGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 177 ~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~il--YGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
++-++++++.+.+.++..-...-+ ...+++|+ =--.---.|+.+|++.|.|||+++|.+=|.
T Consensus 92 kv~s~~~v~~~~~~l~~~~~~~~~-~~~~~~ii~~IEt~~gl~~~~eIaa~~~v~~l~~G~~Dls 155 (221)
T pfam03328 92 KVETAEEAREAVSACRYPPKGIRG-ANGNTCLLAQIESALGVLNADEIAAVEGLDGVFLGPEDLS 155 (221)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCC-CCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECHHHHH
T ss_conf 669999999999997435421268-8897279999789899996999974899878998789999
No 126
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=52.23 E-value=20 Score=17.14 Aligned_cols=137 Identities=19% Similarity=0.182 Sum_probs=69.7
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 06777540731001042000221357999999999999833474799816552033349800011100222100000013
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
.+..|.+.|+.+|++|-.= -++-+.+.+ .+.+.|-.+++-+-=.....--+.+.+.-.-.+....+......
T Consensus 89 ~v~~ll~~G~~rViiGt~a-----v~~p~~v~~---~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g 160 (241)
T COG0106 89 DVEALLDAGVARVIIGTAA-----VKNPDLVKE---LCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG 160 (241)
T ss_pred HHHHHHHCCCCEEEEECCE-----ECCHHHHHH---HHHHCCCCEEEEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHCC
T ss_conf 9999998799889980312-----169999999---99985982899997148853204610125678999999998578
Q ss_pred CCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCC-CCCEEEECHHHCC
Q ss_conf 41132051353045576431124554467999999633224164308862778987899996689-8968897434358
Q gi|254780197|r 162 VPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIE-NIDGLLVGGASLQ 239 (264)
Q Consensus 162 ~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~-~iDG~LVG~ASl~ 239 (264)
---|-|--|=-=||-.=++.+-..+.+..+ ++|++|-|.|+.-+=-+.+... .++|+-||+|-+.
T Consensus 161 ~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-------------~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 161 LAHILYTDISRDGTLSGPNVDLVKELAEAV-------------DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHH-------------CCCEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHC
T ss_conf 776999851446645777879999999982-------------767898668687999999985579728998668964
No 127
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=51.24 E-value=7.4 Score=19.83 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.1
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3530455764311245544679999
Q gi|254780197|r 170 IWAIGTGRVPAVVDLEKIHSFVRRI 194 (264)
Q Consensus 170 vWAIGtG~~a~~~~i~~~~~~Ir~~ 194 (264)
-=|||||.-+.|+|..-+.+.|.+.
T Consensus 227 aTAiGTGlN~~~~Y~~lvvK~laev 251 (469)
T TIGR00839 227 ATAIGTGLNTPPEYIKLVVKKLAEV 251 (469)
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 5102157787711389998876411
No 128
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=51.00 E-value=21 Score=17.02 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 2455446799999963322416430886277898789999668989688974343588
Q gi|254780197|r 183 DLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 183 ~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
+.....+.+|+.|-.. ...+++|+=-|+.+++++.+|...+ ||++=||..=.++
T Consensus 226 ~~~~l~~~vR~~LD~~---G~~~vkI~aSggl~e~~I~~l~~~g-ID~~GVGt~l~~a 279 (302)
T cd01571 226 VFRYLIREVRWALDIR---GYKHVKIFVSGGLDEEDIKELEDVG-VDAFGVGTAISKA 279 (302)
T ss_pred CHHHHHHHHHHHHHHC---CCCCCEEEEECCCCHHHHHHHHHCC-CCEEECCCCCCCC
T ss_conf 7999999999999766---9887489996999999999998579-9999818543799
No 129
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=50.52 E-value=21 Score=16.97 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 433212067775407310010420002213579999999999998334747
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP 126 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~p 126 (264)
.|-|+|....++..|+++|+|==||+-..-.-.|.....-++.|.++||.+
T Consensus 8 ~~Qg~idw~~vk~~gv~fviiKas~gteg~~~~D~~~~~n~~~A~~aGl~v 58 (191)
T cd06414 8 EWQGDIDWKKVKASGVDFAIIRAGYGGYGELQEDKYFEENIKGAKAAGIPV 58 (191)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEECCCCCCCCEECHHHHHHHHHHHHCCCCE
T ss_conf 889987999998779949999961366787214878999999999879954
No 130
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.82 E-value=22 Score=16.91 Aligned_cols=151 Identities=18% Similarity=0.138 Sum_probs=74.2
Q ss_pred CHHHHHHHCCCCEEE--CC-----------HHCCCC-CCCCH-------HHHHHHHHHHHHCCCCEEEECCCCCHHHHCC
Q ss_conf 067775407310010--42-----------000221-35799-------9999999999833474799816552033349
Q gi|254780197|r 82 SANMLADCGANFVIL--GH-----------SERRIG-HREDS-------YVVQSKVKSACNAGLYPIVCIGETDEEYRSG 140 (264)
Q Consensus 82 Sa~mL~d~g~~~vii--GH-----------SERR~~-~~E~d-------~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~ 140 (264)
+|...++.|.+.|.| +| +-+|+. ++-+- ..|-+.++.+.-.++.+-+=+.-.. ..+.+
T Consensus 146 AA~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~vg~df~vgvRls~~d-~~~~g 224 (327)
T cd02803 146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD-FVPGG 224 (327)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH-CCCCC
T ss_conf 99999984999899835766188872175469877778889899989999999999997398876179977021-26899
Q ss_pred CCCC---CCCCCHHHHHHCCCCCCCCE-EEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-C
Q ss_conf 8000---11100222100000013411-32051353045576431124554467999999633224164308862778-9
Q gi|254780197|r 141 RTFE---VLQKQLDCSLPSEFKSSVPV-IAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-D 215 (264)
Q Consensus 141 ~~~~---~l~~Ql~~~l~~~~~~~~~i-IAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~ 215 (264)
.+.+ .+.++|+.. +++-.+... --+.|.|...+... .+.........||+.+ ++||+.-|.+ +
T Consensus 225 ~~~~e~~~~~~~l~~~--gvd~i~vs~g~~~~~~~~~~~~~~-~~~~~~~~~~~ik~~~---------~~pvi~~G~i~~ 292 (327)
T cd02803 225 LTLEEAIEIAKALEEA--GVDALHVSGGSYESPPPIIPPPYV-PEGYFLELAEKIKKAV---------KIPVIAVGGIRD 292 (327)
T ss_pred CCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHC---------CCCEEEECCCCC
T ss_conf 9989999999999855--999899777845667544678777-7522389999999976---------981999899899
Q ss_pred HHHHHHHHCCCCCCEEEECHHHCCHHHHHH
Q ss_conf 878999966898968897434358899999
Q gi|254780197|r 216 VANAEDFSLIENIDGLLVGGASLQHELFLK 245 (264)
Q Consensus 216 ~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~ 245 (264)
++.++++++...+|.+-+||+.+---+|.+
T Consensus 293 ~~~a~~~l~~g~~D~V~~gR~~iadPd~~~ 322 (327)
T cd02803 293 PEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCHHH
T ss_conf 999999998899312586699997914999
No 131
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=49.48 E-value=8.7 Score=19.40 Aligned_cols=85 Identities=24% Similarity=0.127 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCCEEEECCCCCHHHHCCCC----CCCCCCCHHHHHHCCCCC--CCCEEEECHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999983347479981655203334980----001110022210000001--341132051353045576431124554
Q gi|254780197|r 114 SKVKSACNAGLYPIVCIGETDEEYRSGRT----FEVLQKQLDCSLPSEFKS--SVPVIAYEPIWAIGTGRVPAVVDLEKI 187 (264)
Q Consensus 114 ~K~~~al~~~l~pIlCiGE~~~e~~~~~~----~~~l~~Ql~~~l~~~~~~--~~~iIAYEPvWAIGtG~~a~~~~i~~~ 187 (264)
+++..+....+.-|+=||=|==+--.--| .+=-..||+.++..+... +..-+|-==. |+|||.-+.++..++|
T Consensus 166 ~~~l~~Ks~~F~~ivKIGRTHLqDAtPLTLGQEfSGY~~qL~~~l~~i~~sL~~l~~LA~GGT-AVGTGLN~~~~f~~Kv 244 (459)
T TIGR00979 166 KKTLDEKSKEFADIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIEESLPHLYELALGGT-AVGTGLNTHPGFDEKV 244 (459)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCHHHHHHH
T ss_conf 999999999860872005644132445400245899999999999999999999999735773-2315668866678899
Q ss_pred HHHHHHHHHHHC
Q ss_conf 467999999633
Q gi|254780197|r 188 HSFVRRILLDRF 199 (264)
Q Consensus 188 ~~~Ir~~l~~~~ 199 (264)
...|++.-...|
T Consensus 245 ~~~~~~~T~~~F 256 (459)
T TIGR00979 245 AEEIAKFTGLPF 256 (459)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999737899
No 132
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.37 E-value=22 Score=16.86 Aligned_cols=55 Identities=9% Similarity=0.248 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 43112455446799999963322416430886277898789999668989688974343588
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
-+|+++.++...+|+.- . .+++.+-=-|.+|++|+.++... +||.+=+|.--+.+
T Consensus 212 ~s~e~~~~~v~~l~~~~--~----~~~v~ieaSGGI~~~ni~~ya~t-GVD~IS~g~lt~s~ 266 (279)
T PRK08385 212 MTPEEIREVIEALKELG--L----REKVKIEVSGGITPETIAEYAKL-DVDVISLGALTHSV 266 (279)
T ss_pred CCHHHHHHHHHHHHHHC--C----CCCEEEEEECCCCHHHHHHHHHC-CCCEEECCHHHCCC
T ss_conf 99999999999987507--6----89789999789989999999855-98999849777699
No 133
>pfam06948 consensus
Probab=48.79 E-value=8.9 Score=19.35 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=24.1
Q ss_pred CCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 31001042000221357999999999999833474799816
Q gi|254780197|r 91 ANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131 (264)
Q Consensus 91 ~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiG 131 (264)
++..+-|-||++. -|+|..+.+-+...++.|..|.-|++
T Consensus 36 Vkvi~fGPSekll--ae~d~~~~~~l~el~~~gv~~~AC~~ 74 (112)
T pfam06948 36 VKVIFFGPSEKLL--AEGDQEVLKILSELLQLGETPLACQR 74 (112)
T ss_pred EEEEEECCCHHHH--HCCCHHHHHHHHHHHHCCCEEHHHHH
T ss_conf 7999988568988--44869999999999986981637889
No 134
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=48.63 E-value=23 Score=16.79 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 433212067775407310010420002213579999999999998334747
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP 126 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~p 126 (264)
.|-|+|....++..|+++|+|==+|-..+ .|......++.|.++||.+
T Consensus 8 ~~Qg~Idw~~vk~~gv~FaiiKateG~~~---~D~~~~~n~~~A~~aGl~v 55 (199)
T cd06412 8 GHQGSVDWSGAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIR 55 (199)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEEECCCCC---CCHHHHHHHHHHHHCCCEE
T ss_conf 76788799999868994999998569875---3867999999999879908
No 135
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=48.42 E-value=16 Score=17.72 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHH
Q ss_conf 455446799999963322416430886277898789
Q gi|254780197|r 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANA 219 (264)
Q Consensus 184 i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~ 219 (264)
+++.|.-+...+..... ... -||=|||++.=|+
T Consensus 73 a~eA~~~Li~~V~~~~~--~~g-lILEGGSISLl~~ 105 (232)
T pfam01745 73 AEEAHDRLIAEVTSHKD--EGG-VILEGGSISLLKR 105 (232)
T ss_pred HHHHHHHHHHHHHCCCC--CCC-EEEECCHHHHHHH
T ss_conf 89999999999960466--786-6872750999999
No 136
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=48.18 E-value=9 Score=19.31 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=45.3
Q ss_pred CCCCEEEEECCHHHHHHHHHHHCCC-CCCHHHHH-CCCCCCCCCCCCCCHHHHHH-H--CCCCEEECCHHCCCCCCC---
Q ss_conf 5771199968965599999973257-63102220-12223334332120677754-0--731001042000221357---
Q gi|254780197|r 36 SCCIDVAICPPATLIYESSRLCKTS-SVIIGAQD-CHIAEYGPYTGDISANMLAD-C--GANFVILGHSERRIGHRE--- 107 (264)
Q Consensus 36 ~~~veivi~Pp~~~L~~~~~~~~~s-~I~igAQn-v~~~~~GA~TGeiSa~mL~d-~--g~~~viiGHSERR~~~~E--- 107 (264)
.+.+++.+.++.-.+..+.+.++.- ++.+---= +...+.+.+.-+-..+.+++ + -++.+.-+..|-+.+.+.
T Consensus 69 ~~~iKiG~l~s~~~i~~v~~~l~~~~~~~vV~DPVl~s~~g~~l~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~ 148 (242)
T cd01169 69 VDAIKIGMLGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIA 148 (242)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 88899999698999999999999779977772861672899855557899999999985433208999999998588999
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 999999999999833474799816
Q gi|254780197|r 108 DSYVVQSKVKSACNAGLYPIVCIG 131 (264)
Q Consensus 108 ~d~~I~~K~~~al~~~l~pIlCiG 131 (264)
+.+.+..-.+...+.|-..++==|
T Consensus 149 ~~~~~~~~a~~l~~~G~~~VlitG 172 (242)
T cd01169 149 TEEDMMKAAKALLALGAKAVLIKG 172 (242)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 989999999999843699599926
No 137
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=48.15 E-value=23 Score=16.74 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 433212067775407310010420002213579999999999998334747
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP 126 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~p 126 (264)
.|.|.+....++..|+++|||-=+|-. +..|.....-++.|.++||.+
T Consensus 7 ~~qg~id~~~~k~~G~~fviikateG~---~~~D~~~~~~~~~a~~~Gl~~ 54 (186)
T cd00599 7 SWQGSIDWNAVKAAGIDFVFIKATEGT---TYVDPKFATNRARARAAGLLV 54 (186)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEEECCC---CCCCHHHHHHHHHHHHCCCEE
T ss_conf 889988999999779959999997189---855867999999999869858
No 138
>PRK08904 consensus
Probab=47.86 E-value=23 Score=16.72 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=79.7
Q ss_pred CCCCEEEEECCHHHHHHHHHHHC-CCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHH
Q ss_conf 57711999689655999999732-57631022201222333433212067775407310010420002213579999999
Q gi|254780197|r 36 SCCIDVAICPPATLIYESSRLCK-TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQS 114 (264)
Q Consensus 36 ~~~veivi~Pp~~~L~~~~~~~~-~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~ 114 (264)
...+||-+--|. .+..+..+.+ ..++.+|+=.+-.. -.+....+.|++|.+-=|. +.+++
T Consensus 36 i~~iEiTlrtp~-a~~~i~~l~~~~p~~~vGaGTVl~~--------e~~~~a~~aGA~FiVSP~~--------~~~v~-- 96 (207)
T PRK08904 36 IPTLEITLRTPV-GLDAIRLIAKEVPNAIVGAGTVTNP--------EQLKAVEDAGAVFAISPGL--------HESLA-- 96 (207)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCCEEEEEECCCH--------HHHHHHHHCCCCEEECCCC--------CHHHH--
T ss_conf 988999579913-9999999998689876855313689--------9999999849999984899--------89999--
Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999833474799816552033349800011100222100000013411320513530455764311245544679999
Q gi|254780197|r 115 KVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRI 194 (264)
Q Consensus 115 K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~ 194 (264)
+.|.++++-.|-=+--.-|... =++.+ . -++=.=|.-..| -..+||..
T Consensus 97 --~~a~~~~i~~iPGv~TpsEi~~----------A~~~G------~--~~vK~FPA~~~G------------G~~~lkal 144 (207)
T PRK08904 97 --KAGHNSGIPLIPGVATPGEIQL----------ALEHG------I--DTLKLFPAEVVG------------GKAMLKAL 144 (207)
T ss_pred --HHHHHCCCCEECCCCCHHHHHH----------HHHCC------C--CEEEECCCHHCC------------CHHHHHHH
T ss_conf --9999839976578699999999----------99879------9--989977622208------------89999987
Q ss_pred HHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH------HHHHHHHHHHHH
Q ss_conf 99633224164308862778987899996689896889743435889------999999999999
Q gi|254780197|r 195 LLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE------LFLKIVEIVERV 253 (264)
Q Consensus 195 l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~------~F~~Ii~~~~~~ 253 (264)
..-| .+++++==|.|+++|+.++++.+++-. |||..|-++ +|..|-+.+++.
T Consensus 145 -~~pf----p~i~~~pTGGV~~~N~~~yl~~~~v~~--vgGS~l~~~~~i~~~d~~~I~~~a~~a 202 (207)
T PRK08904 145 -YGPY----ADVRFCPTGGISLATAPEYLALPNVLC--VGGSWLTPKEAVKNKDWDTITRLAKEA 202 (207)
T ss_pred -HCCC----CCCEEEECCCCCHHHHHHHHHCCCEEE--EECHHHCCHHHHHCCCHHHHHHHHHHH
T ss_conf -4659----998088658989878999981898499--988143899999748999999999999
No 139
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=47.52 E-value=24 Score=16.68 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=33.9
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 04557643112455446799999963322416430886277898789999668989688974
Q gi|254780197|r 173 IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVG 234 (264)
Q Consensus 173 IGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG 234 (264)
=|||++-+-+.++... ...|++-.|..+|+|+.+.+....-+|+=|-
T Consensus 135 GGtG~~fdw~~l~~~~---------------~~~p~~LAGGl~~~NV~~ai~~~~p~gvDvs 181 (203)
T cd00405 135 GGTGKTFDWSLLRGLA---------------SRKPVILAGGLTPDNVAEAIRLVRPYGVDVS 181 (203)
T ss_pred CCCCCEECHHHHHHCC---------------CCCCEEEECCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 8776533889986212---------------4798799778898899999985099899976
No 140
>PRK13138 consensus
Probab=46.97 E-value=24 Score=16.63 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=61.7
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 06777540731001042000221357999999999999833474799816552033349800011100222100000013
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
-...+++.|++.+||=--=-- ..|..+.. ..+.++|+..|.-|.-+-.+.. +..+.+. .+
T Consensus 110 F~~~~~~~GvdGlIipDLP~e--~~E~~~~~----~~~~~~~i~~I~liaPtt~~~R-----------i~~i~~~---s~ 169 (264)
T PRK13138 110 FTERAKNSGIQGLIIPDLPFD--TPEAEEFF----SQLERKKIDFIHLVTPATTEDR-----------IQSMKSF---AS 169 (264)
T ss_pred HHHHHHHCCCCEEECCCCCCC--CHHHHHHH----HHHHHCCCCEEEECCCCCCHHH-----------HHHHHHH---CC
T ss_conf 999998769775853689865--03359999----9999869986752179998999-----------9999973---88
Q ss_pred CCEEEECHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 4113205135304-557-6431124554467999999633224164308862778-98789999668989688974343
Q gi|254780197|r 162 VPVIAYEPIWAIG-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 162 ~~iIAYEPvWAIG-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
- .| |=- -.-| ||. ..-+.++.+..+.||+. .++|+.-|=.+ +++-++++. ...||+-||+|=
T Consensus 170 g-Fi-Y~V-s~~GvTG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGIs~~e~~~~~~--~~ADGvIVGSai 234 (264)
T PRK13138 170 G-FI-YYV-TSYGVTGERGAIASGLEDRIQMVRKI---------VGLPVCAGFGISTADQAKEIS--TYADGVIIGSAV 234 (264)
T ss_pred C-EE-EEE-ECCCCCCCCCCCCHHHHHHHHHHHHH---------CCCCEEEEECCCCHHHHHHHH--HCCCEEEECHHH
T ss_conf 8-08-987-54566787655537699999999974---------389838860679899999998--349999981999
No 141
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=46.51 E-value=25 Score=16.59 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=57.4
Q ss_pred HHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 77540731001042000221357999999999999833-47479981655203334980001110022210000001341
Q gi|254780197|r 85 MLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNA-GLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP 163 (264)
Q Consensus 85 mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~-~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~ 163 (264)
..+++|++.+++-=. -|+.-+++-+-.-++...++ ++-+++.= + .+.. +--..+....+. ..+
T Consensus 94 ~a~~~Gad~v~v~pP---yy~~~~~~~l~~~f~~ia~a~~~pi~lYn------~-~~~~--~~~~~l~~L~~~---~p~- 157 (296)
T TIGR03249 94 LAEKAGADGYLLLPP---YLINGEQEGLYAHVEAVCESTDLGVIVYQ------R-DNAV--LNADTLERLADR---CPN- 157 (296)
T ss_pred HHHHCCCCEEEECCC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEC------C-CCCC--CCHHHHHHHHHC---CCC-
T ss_conf 998759997897799---88999999999999999971599778730------7-7878--799999999815---798-
Q ss_pred EEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHH
Q ss_conf 13205135304557643112455446799999963322416430886277898789999668989688974343588999
Q gi|254780197|r 164 VIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243 (264)
Q Consensus 164 iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F 243 (264)
|++.- -+..++..+.+.++.. .++..++.|-.-...-.-..+ .-+.||..-|-+.+-|+.+
T Consensus 158 i~giK----------~s~~d~~~~~~~~~~~--------~~~~~~~~g~~~~d~~~~~~~-~~G~~g~i~~~~n~~P~~~ 218 (296)
T TIGR03249 158 LVGFK----------DGIGDMEQMIEITQRL--------GDRLGYLGGMPTAEVTAPAYL-PLGVTSYSSAIFNFIPHIA 218 (296)
T ss_pred EEEEE----------ECCCCHHHHHHHHHHC--------CCCCEEEECCCCHHHHHHHHH-HCCCCEEEEHHHHHHHHHH
T ss_conf 79999----------7766899999999973--------997279738971289999999-3899899624656759999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780197|r 244 LKIVEIVE 251 (264)
Q Consensus 244 ~~Ii~~~~ 251 (264)
.++.+.++
T Consensus 219 ~~l~~a~~ 226 (296)
T TIGR03249 219 RAFYEALR 226 (296)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 142
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=46.49 E-value=18 Score=17.38 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=70.6
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHC--CCCCCCC--------CCCHH
Q ss_conf 67775407310010420002213579999999999998334-7479981655203334--9800011--------10022
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG-LYPIVCIGETDEEYRS--GRTFEVL--------QKQLD 151 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~-l~pIlCiGE~~~e~~~--~~~~~~l--------~~Ql~ 151 (264)
++.|-++|+++||||=+= +.+. +.+.+- +.+.+ =.+++-+- -|+. |. ..|. .=++.
T Consensus 88 v~~ll~~Gv~RVI~GT~A----~~~~-~~v~~~---~~~~g~~~i~V~lD----~~~g~~G~-~~V~v~GW~E~s~~~~~ 154 (241)
T TIGR00007 88 VEKLLDLGVDRVIIGTAA----VENP-DLVKEL---LKEYGPERIVVSLD----ARDGEEGV-KEVAVKGWKEKSEVSLE 154 (241)
T ss_pred HHHHHHCCCCEEEEEEEE----ECCH-HHHHHH---HHHHCCCCEEEEEE----EECCCCCE-EEEEEEEEECCCCCCHH
T ss_conf 999997398579973322----1086-999999---99848996599986----31488751-78887404113562799
Q ss_pred HHHHCCCCCCCCEEEECH-HHHH--------CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHH
Q ss_conf 210000001341132051-3530--------4557643112455446799999963322416430886277898789999
Q gi|254780197|r 152 CSLPSEFKSSVPVIAYEP-IWAI--------GTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDF 222 (264)
Q Consensus 152 ~~l~~~~~~~~~iIAYEP-vWAI--------GtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l 222 (264)
...+. ++=-| ++.| ||-.=++-+...++...+ .+++|+|-|.|+.-|=-.-
T Consensus 155 ~~~~~--------~~~~G~~~~ii~TdI~~DGtl~G~n~~~~~~~~~~~------------~~~~viaSGGv~s~~D~~~ 214 (241)
T TIGR00007 155 ELAKR--------LEELGELEGIIYTDISRDGTLSGPNFELTKELVKAL------------VNVPVIASGGVSSIDDLRA 214 (241)
T ss_pred HHHHH--------HHHCCCCCEEEEEEEECCCCEECCCCCHHHHHHHHH------------CCCEEEEECCCCCHHHHHH
T ss_conf 99999--------851586336899752006720078732889999873------------5841899426578899999
Q ss_pred HCC--CCCCEEEECHHHCC
Q ss_conf 668--98968897434358
Q gi|254780197|r 223 SLI--ENIDGLLVGGASLQ 239 (264)
Q Consensus 223 ~~~--~~iDG~LVG~ASl~ 239 (264)
+.. -+++|+=||+|=+.
T Consensus 215 L~~~~~G~~GvIvGkALY~ 233 (241)
T TIGR00007 215 LKEIELGVYGVIVGKALYE 233 (241)
T ss_pred HHHCCCCCCEEEEEEEECC
T ss_conf 9971598327998621116
No 143
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.86 E-value=26 Score=16.43 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHH
Q ss_conf 4311245544679999996332241643088627789878999966898968897434
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGA 236 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~A 236 (264)
-+|+++.++...+|+. ..++.+.=-|.+|++|+.++. ..+||.+=+|.-
T Consensus 222 m~~~~~~~~v~~l~~~--------~~~v~iEaSGgIn~~ni~~yA-~tGVD~Is~gal 270 (285)
T PRK07428 222 MPVDQMQQAVQLIRQQ--------NPRVKIEASGNITLETIRAVA-ETGVDYISTSAP 270 (285)
T ss_pred CCHHHHHHHHHHHHHH--------CCCEEEEEECCCCHHHHHHHH-HCCCCEEECCHH
T ss_conf 9999999999998730--------898899998999999999999-749999983831
No 144
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=44.78 E-value=23 Score=16.72 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHH
Q ss_conf 554467999999633224164308862778-987899996689896889743435889999999
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQHELFLKIV 247 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii 247 (264)
......||+.+ ++||+..|.+ +|+.++++++....|-+-+||+.+---+|.+=+
T Consensus 265 ~~~a~~ir~~~---------~~Pvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~liadPdl~~K~ 319 (353)
T cd02930 265 AWATAKLKRAV---------DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKA 319 (353)
T ss_pred HHHHHHHHHHC---------CCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH
T ss_conf 99999988754---------83489659979899999999879962478409987693699999
No 145
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=44.12 E-value=27 Score=16.36 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 6430886277898789999668989688974343588
Q gi|254780197|r 204 QKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 204 ~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
.+++++|||.++......-+-...-|-+-||.+--+.
T Consensus 181 ~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (231)
T pfam01884 181 DDARLIVGGGIKSGEKAKEMARAGADVIVTGNVIEEK 217 (231)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEEEC
T ss_conf 8976899699799999999997799999979714417
No 146
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=43.73 E-value=21 Score=17.04 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCCHHHHHH
Q ss_conf 554467999999633224164308862778-9878999966898968897434358899999
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQHELFLK 245 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~ 245 (264)
.+....||+.+ ++||+..|.+ +++.++++++...+|-+-+||+.+---+|..
T Consensus 274 ~~~a~~ik~~~---------~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ladPd~v~ 326 (343)
T cd04734 274 LPLAARIKQAV---------DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVA 326 (343)
T ss_pred HHHHHHHHHHC---------CCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHH
T ss_conf 88999999972---------985999799899999999998799621697899997811999
No 147
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=43.71 E-value=27 Score=16.32 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCHHHHHCCCCC---CCCCCCCCCHHHHHHHCCCCEEECCH-HC-CCC-------C-CCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 310222012223---33433212067775407310010420-00-221-------3-57999999999999833474799
Q gi|254780197|r 62 VIIGAQDCHIAE---YGPYTGDISANMLADCGANFVILGHS-ER-RIG-------H-REDSYVVQSKVKSACNAGLYPIV 128 (264)
Q Consensus 62 I~igAQnv~~~~---~GA~TGeiSa~mL~d~g~~~viiGHS-ER-R~~-------~-~E~d~~I~~K~~~al~~~l~pIl 128 (264)
+.+|..++.-.. -|-++.+-....+++.|.+.|=|==. ++ +.. . .+....+.+.+..|.+.||.+++
T Consensus 55 ~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~i 134 (407)
T COG2730 55 LNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLI 134 (407)
T ss_pred CCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 24684030266621334222688999999738887973422755304678896722550899999999999856926999
Q ss_pred E--------CCCCCHHHHCCCCC-----CC---CCCCHHHHHHCCCCCCCC---EEEECHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 8--------16552033349800-----01---110022210000001341---13205135304557643112455446
Q gi|254780197|r 129 C--------IGETDEEYRSGRTF-----EV---LQKQLDCSLPSEFKSSVP---VIAYEPIWAIGTGRVPAVVDLEKIHS 189 (264)
Q Consensus 129 C--------iGE~~~e~~~~~~~-----~~---l~~Ql~~~l~~~~~~~~~---iIAYEPvWAIGtG~~a~~~~i~~~~~ 189 (264)
= .+.........-.. +. +..|+..-.++ .+.+ -++.||.+ |++.....-.. .+.+.
T Consensus 135 D~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~---~~~VIg~~~~NEP~~-~~~~~~w~~~~-~~A~~ 209 (407)
T COG2730 135 DLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKN---YDTVIGFELINEPNG-IVTSETWNGGD-DEAYD 209 (407)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEEECCCCC-CCCCCCHHCCC-HHHHH
T ss_conf 74457767788664345454455651388999999999986168---981562455017877-68761111140-78999
Q ss_pred HHHHHHHH
Q ss_conf 79999996
Q gi|254780197|r 190 FVRRILLD 197 (264)
Q Consensus 190 ~Ir~~l~~ 197 (264)
.+|+.+..
T Consensus 210 ~v~~~i~~ 217 (407)
T COG2730 210 VVRNAILS 217 (407)
T ss_pred HHHHHHHH
T ss_conf 99876653
No 148
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.62 E-value=18 Score=17.41 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHCCCCEEE--CC-----------HHCCCC-CC---CCH----HHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCC
Q ss_conf 7775407310010--42-----------000221-35---799----999999999983347479981655203334980
Q gi|254780197|r 84 NMLADCGANFVIL--GH-----------SERRIG-HR---EDS----YVVQSKVKSACNAGLYPIVCIGETDEEYRSGRT 142 (264)
Q Consensus 84 ~mL~d~g~~~vii--GH-----------SERR~~-~~---E~d----~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~ 142 (264)
.-.++.|.+.|.| +| +-+|.. ++ |+- ..|-+.++.+...++.+.+=+.-. +-.+.|.+
T Consensus 156 ~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~~vg~d~~v~~Ris~~-d~~~~G~~ 234 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA-DFQRGGFT 234 (338)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH-HHCCCCCC
T ss_conf 99998399989982365548998629876899685798988998899999999999719988699984535-42479999
Q ss_pred CCCCCCCHHHHHH--CCCCCCCCEEEEC-HHHHHCCCC-CCC-CHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CH
Q ss_conf 0011100222100--0000134113205-135304557-643-1124554467999999633224164308862778-98
Q gi|254780197|r 143 FEVLQKQLDCSLP--SEFKSSVPVIAYE-PIWAIGTGR-VPA-VVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DV 216 (264)
Q Consensus 143 ~~~l~~Ql~~~l~--~~~~~~~~iIAYE-PvWAIGtG~-~a~-~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~ 216 (264)
.+-... +...|. +++-.+...=.|| |.|..-... ... ..+-.+....||+.+ ++||+..|.. ++
T Consensus 235 ~~d~~~-~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~---------~~Pvi~~G~i~~~ 304 (338)
T cd04733 235 EEDALE-VVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT---------KTPLMVTGGFRTR 304 (338)
T ss_pred HHHHHH-HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---------CCCEEEECCCCCH
T ss_conf 899999-999998769988994688545732247765444567510599999999984---------9979998998999
Q ss_pred HHHHHHHCCCCCCEEEECHHHCCHHHHHH
Q ss_conf 78999966898968897434358899999
Q gi|254780197|r 217 ANAEDFSLIENIDGLLVGGASLQHELFLK 245 (264)
Q Consensus 217 ~N~~~l~~~~~iDG~LVG~ASl~~~~F~~ 245 (264)
+.+++++.....|-+.+||+.+---+|.+
T Consensus 305 ~~ae~~l~~g~~DlV~~gR~~iadPdl~~ 333 (338)
T cd04733 305 AAMEQALASGAVDGIGLARPLALEPDLPN 333 (338)
T ss_pred HHHHHHHHCCCCEEHHHHHHHHHCCCHHH
T ss_conf 99999998799510898899997905999
No 149
>KOG2683 consensus
Probab=43.08 E-value=28 Score=16.26 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCCEEEECCCCCHHHHHHHHCC-CCCCEEEECHHHCCHHHHHHHHHH
Q ss_conf 6430886277898789999668-989688974343588999999999
Q gi|254780197|r 204 QKMRILYGGSVDVANAEDFSLI-ENIDGLLVGGASLQHELFLKIVEI 249 (264)
Q Consensus 204 ~~i~ilYGGSV~~~N~~~l~~~-~~iDG~LVG~ASl~~~~F~~Ii~~ 249 (264)
.++ +++|-+||++-+...+.. ++-||+||=|.||-.-+=-.+|..
T Consensus 223 pdV-~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~ 268 (305)
T KOG2683 223 PDV-TFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRH 268 (305)
T ss_pred CCE-EEECCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 756-8855879848889999988536846993315777778899998
No 150
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.10 E-value=30 Score=16.06 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=29.6
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 6430886277898789999668989688974343588999999999999
Q gi|254780197|r 204 QKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIVER 252 (264)
Q Consensus 204 ~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~~~ 252 (264)
+++.|+.| + ..-.-..+. -+.+|+.-|-+.+-|+.+.+|.+.+.+
T Consensus 178 ~~~~v~~G-~--d~~~~~~l~-~Ga~G~i~~~~n~~P~~~~~l~~a~~~ 222 (284)
T cd00950 178 DDFAVLSG-D--DALTLPFLA-LGGVGVISVAANVAPKLMAEMVRAALA 222 (284)
T ss_pred CCCEEECC-C--HHHHHHHHH-HCCCEEEEEEHHCCHHHHHHHHHHHHC
T ss_conf 87546448-6--899999999-549969985310278999999999987
No 151
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=41.01 E-value=30 Score=16.06 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=55.4
Q ss_pred HHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 77754073100104200022135799999999999983347479981--6552033349800011100222100000013
Q gi|254780197|r 84 NMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCI--GETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 84 ~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCi--GE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
.+++.++.+++=+ |. .|+.+.+.. ++. ..++.+|--+ .+... .+ ++.... ...+
T Consensus 71 ~~~~~~~~d~vQl-HG------~e~~~~~~~-l~~--~~~~~iikai~v~~~~~-l~----------~~~~~~---~~~d 126 (212)
T PRK01222 71 EIVEAVGLDLLQL-HG------DETPEFCRQ-LKR--RYGLPVIKALRVRPAAD-LE----------AAAAYY---PVAD 126 (212)
T ss_pred HHHHHCCCCEEEE-CC------CCCHHHHHH-HHH--HCCCEEEEEEECCCHHH-HH----------HHHHHH---CCCC
T ss_conf 9998569988998-57------437899999-997--53970899984187788-99----------999874---6687
Q ss_pred CCEE-EECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 4113-20513530455764311245544679999996332241643088627789878999966898968897
Q gi|254780197|r 162 VPVI-AYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLV 233 (264)
Q Consensus 162 ~~iI-AYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LV 233 (264)
.+++ ++-+ --=|||++-+-+.+... ....|++-.|..+|+|+.+.+..-.-+|+=|
T Consensus 127 ~~L~Ds~~~-~~GGtG~~fdw~~l~~~---------------~~~~~~~LAGGl~~~Nv~~ai~~~~p~gvDv 183 (212)
T PRK01222 127 GLLLDAYVP-LPGGTGKTFDWSLLAGF---------------PAGLPWMLAGGLNPDNVAEAIRQVRPYGVDV 183 (212)
T ss_pred EEEECCCCC-CCCCCCCCCCHHHHHHC---------------CCCCCEEEECCCCHHHHHHHHHHHCCCEEEE
T ss_conf 898638987-67877764387998614---------------3578789966788789999999859999996
No 152
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=40.74 E-value=30 Score=16.03 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 4311245544679999996332241643088627789878999966898968897434358
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
-+|+++.++...+|.. +++.+---|.+|++|+.++.. .+||-+=+|.--..
T Consensus 210 ~~~~~~~~~v~~~~~~---------~~v~ieaSGgI~~~ni~~ya~-~GvD~Is~g~lt~s 260 (269)
T cd01568 210 MSPEELKEAVKLLKGL---------PRVLLEASGGITLENIRAYAE-TGVDVISTGALTHS 260 (269)
T ss_pred CCHHHHHHHHHHHCCC---------CCEEEEEECCCCHHHHHHHHH-CCCCEEEECHHHCC
T ss_conf 8999999999984779---------985999989999999999997-59999990840059
No 153
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=40.70 E-value=26 Score=16.40 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHCCCCEEECCHHCCCCCC--CCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 332120677754073100104200022135--799999999999983347479981
Q gi|254780197|r 77 YTGDISANMLADCGANFVILGHSERRIGHR--EDSYVVQSKVKSACNAGLYPIVCI 130 (264)
Q Consensus 77 ~TGeiSa~mL~d~g~~~viiGHSERR~~~~--E~d~~I~~K~~~al~~~l~pIlCi 130 (264)
-|+-.|.+.++ |+.+-++.|-+--..|+ +-.+...+.+......|=.||+-=
T Consensus 46 GTAKps~~e~~--~vpHhliDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVG 99 (308)
T COG0324 46 GTAKPSLEELA--GVPHHLIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVG 99 (308)
T ss_pred CCCCCCHHHHC--CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 07999999985--8997875456832255499999999999999996899879976
No 154
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=40.66 E-value=30 Score=16.02 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 433212067775407310010420002213579999999999998334747
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP 126 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~p 126 (264)
.+.|++....||..|+++++|==.|- .+.-|.....-++.|.++||.+
T Consensus 8 ~~q~~~~w~~vk~~G~~faiIra~eg---~~~~D~~~~~n~~~A~~aGl~v 55 (196)
T cd06416 8 QPTSVSTFQCLKNNGYSFAIIRAYRS---NGSFDPNSVTNIKNARAAGLST 55 (196)
T ss_pred CCCCCCCHHHHHHCCCEEEEEEEECC---CCCCCHHHHHHHHHHHHCCCEE
T ss_conf 87771269999987983999999756---9957844899999999879814
No 155
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=39.99 E-value=31 Score=15.96 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEE--CCH----HHHHHHHHHHCCCCCCHHHHHCCCC-----CCCCCCCCCC-HHH
Q ss_conf 999999999999522234577119996--896----5599999973257631022201222-----3334332120-677
Q gi|254780197|r 18 LRLSLERIQKIVEGIRRNSCCIDVAIC--PPA----TLIYESSRLCKTSSVIIGAQDCHIA-----EYGPYTGDIS-ANM 85 (264)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~veivi~--Pp~----~~L~~~~~~~~~s~I~igAQnv~~~-----~~GA~TGeiS-a~m 85 (264)
+.+++....+.++ .. +++.+++ |.| ..+..+ +.++.+-+.++.|+-... ..-++.|-.+ ...
T Consensus 48 ~~~~~~~~~~~~~---~~--~vdgli~~~~tf~~~~~~~~~~-~~~~~Pvl~~~~~~~~~~~d~~~~~~s~cG~~~~~~~ 121 (452)
T cd00578 48 TPDEARKAAEEFN---EA--NCDGLIVWMHTFGPAKMWIAGL-SELRKPVLLLATQFNREIPDFMNLNQSACGLREFGNI 121 (452)
T ss_pred CHHHHHHHHHHHH---HC--CCCEEEECCCCCCCHHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999987---75--9979999058668779999999-8579989999479876787755441046677999999
Q ss_pred HHHHCCCCEE-ECCHH
Q ss_conf 7540731001-04200
Q gi|254780197|r 86 LADCGANFVI-LGHSE 100 (264)
Q Consensus 86 L~d~g~~~vi-iGHSE 100 (264)
|..+|+.|.. .||.+
T Consensus 122 l~r~gi~~~~i~g~~~ 137 (452)
T cd00578 122 LARLGIPFKVVYGHWK 137 (452)
T ss_pred HHHCCCCEEEEECCCC
T ss_conf 9987998389866999
No 156
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=39.97 E-value=31 Score=15.96 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 333433212067775407310010420002213579999999999998334747998
Q gi|254780197|r 73 EYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVC 129 (264)
Q Consensus 73 ~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlC 129 (264)
..|+||-+--..||.+.+|+.++-=-|----- -..|+..|.+.|+.+|+-
T Consensus 179 ~~GPfs~~~n~all~q~~id~vItK~SG~~Gg-------~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 179 MRGPFSEEDNKALLEQYRIDVVVTKNSGGAGG-------TYEKIEAARELGIPVIMI 228 (257)
T ss_pred ECCCCCHHHHHHHHHHHCCCEEEECCCCCCCC-------CHHHHHHHHHCCCCEEEE
T ss_conf 23886758899999984888999826776667-------389899999869938999
No 157
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=39.13 E-value=32 Score=15.87 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCC-CCCCEEEECHHH
Q ss_conf 643112455446799999963322416430886277898789999668-989688974343
Q gi|254780197|r 178 VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLI-ENIDGLLVGGAS 237 (264)
Q Consensus 178 ~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~-~~iDG~LVG~AS 237 (264)
+.+...+.++.+.+|+. ..+++|+-||.--..+.+++++. +.+|-+.+|-+-
T Consensus 62 ~~~~~~~~~l~~~ik~~--------~p~~~iv~GG~~~t~~p~~~l~~~~~~D~vv~GEgE 114 (121)
T pfam02310 62 TTNLPAAKELARLLKRI--------RPGVKVVVGGPHPTADPEEVLRAAPGIDDVVRGEGE 114 (121)
T ss_pred CCCCHHHHHHHHHHHHH--------CCCCEEEEECCCCCCCHHHHHHCCCCCCEEEECCCH
T ss_conf 11211368999999985--------989759983876341899998408997589989768
No 158
>PRK13120 consensus
Probab=39.04 E-value=32 Score=15.86 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=34.7
Q ss_pred C-CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 4-557-6431124554467999999633224164308862778-98789999668989688974343
Q gi|254780197|r 174 G-TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 174 G-tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
| ||. ...++++.+..+.||+. -++||.-|=.+ +++-++++.. ..||+-||+|=
T Consensus 185 GVTG~~~~~~~~l~~~i~~ik~~---------t~~Pv~vGFGIs~~e~v~~~~~--~ADGvIVGSAi 240 (285)
T PRK13120 185 GVTGAGSLDTDDVARKLALIRRH---------VHIPVGVGFGIRDAASAQRIAA--HADAVVIGSKL 240 (285)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC---------CCCCEEEEECCCCHHHHHHHHC--CCCEEEECHHH
T ss_conf 54688755668899999999972---------6997599962598999999970--29999987899
No 159
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=38.88 E-value=32 Score=15.85 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=9.3
Q ss_pred CCCEEEECHHHCCHHHHHHHHHH
Q ss_conf 89688974343588999999999
Q gi|254780197|r 227 NIDGLLVGGASLQHELFLKIVEI 249 (264)
Q Consensus 227 ~iDG~LVG~ASl~~~~F~~Ii~~ 249 (264)
+.+|..-|-+..-|+.+.+|.+.
T Consensus 198 G~~g~~s~~~n~~P~~~~~l~~a 220 (296)
T PRK03620 198 GVPTYSSAVFNFIPEIALAFYAA 220 (296)
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
T ss_conf 88578403021268999999999
No 160
>PRK13137 consensus
Probab=38.86 E-value=32 Score=15.85 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCC-C-CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 557-6-431124554467999999633224164308862778-98789999668989688974343
Q gi|254780197|r 175 TGR-V-PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 175 tG~-~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
||. . ...+++.+..+.+|+. .++|++-|=.+ +++-++.+.+. .||+-||+|=
T Consensus 189 TG~r~~~~~~~l~~~i~~ik~~---------t~~Pv~vGFGIs~~e~~~~~~~~--aDGvIVGSai 243 (266)
T PRK13137 189 TGMREGLALGEVPDMLRLARQY---------AALPVAVGFGVKDKATAAQVAQV--ADGVVVGSAF 243 (266)
T ss_pred CCCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHHH--CCEEEEHHHH
T ss_conf 6777667879999999999863---------89987998266988999999831--9999980999
No 161
>PRK00830 consensus
Probab=38.72 E-value=28 Score=16.22 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 45576431124554467999999633224164308862778-987899996689896889743435
Q gi|254780197|r 174 GTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 174 GtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
||.+=++.+.++++.+. .++||+..|.| +.+.+.++++..++||+++|.+-.
T Consensus 199 Gt~~G~d~~l~~~i~~~-------------~~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~f~ 251 (273)
T PRK00830 199 GTKDGYDIPITKKISEE-------------VDIPVIASGGVGNPEHIYEGFSDGKADAALAASIFH 251 (273)
T ss_pred CCCCCCCHHHHHHHHHC-------------CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 96568896999999863-------------799889988999999999999838986887700566
No 162
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=38.65 E-value=12 Score=18.47 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=40.9
Q ss_pred HCCCCCCCCCC-CCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCC
Q ss_conf 01222333433-21206777540731001042000221357999999999999833474799816552033349800011
Q gi|254780197|r 68 DCHIAEYGPYT-GDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVL 146 (264)
Q Consensus 68 nv~~~~~GA~T-GeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l 146 (264)
+-|.+++|+|| |=+.+ |.. |+|++=||.|-... +|++|.+ ..+.=-.|. |..+++.+..|...|
T Consensus 455 ~pHkFSSGSftEGR~Aa---Kaa-vr~ildG~k~~~~~---~da~~Ee----lkk~~Y~Pm----e~f~~yk~~sTa~~V 519 (651)
T TIGR02061 455 SPHKFSSGSFTEGRLAA---KAA-VRYILDGKKEGKEV---SDAVVEE----LKKEVYKPM----ERFREYKDESTADSV 519 (651)
T ss_pred CCCCCCCCCCHHHHHHH---HHH-HHHHHCCCCCCCCC---CHHHHHH----HHHHHCCHH----HHHHHHHHHCCCCCC
T ss_conf 88667766415788999---999-77753367888854---3889999----999851226----788887652278887
Q ss_pred C
Q ss_conf 1
Q gi|254780197|r 147 Q 147 (264)
Q Consensus 147 ~ 147 (264)
.
T Consensus 520 N 520 (651)
T TIGR02061 520 N 520 (651)
T ss_pred C
T ss_conf 8
No 163
>PRK13135 consensus
Probab=38.64 E-value=32 Score=15.83 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=35.2
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 557-64311245544679999996332241643088627789-878999966898968897434358
Q gi|254780197|r 175 TGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 175 tG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
||. .+..+++.+..+.+|+. .++||.-|=.++ ++-++++.. ..||+-||+|=.+
T Consensus 182 TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~v~~i~~--~ADGvIVGSaiVk 237 (267)
T PRK13135 182 TGARSGVEATVGGNVAKIREK---------ITVPVVVGFGISTPQQAADVAA--MADGVVVGSALVK 237 (267)
T ss_pred CCCCCCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCHHHHHHHHC--CCCEEEECHHHHH
T ss_conf 677644448899999999860---------6898489816799999999980--5999998789999
No 164
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=38.33 E-value=33 Score=15.79 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH----CC-------HHHHHHHHHHHH
Q ss_conf 2455446799999963322416430886277898789999668989688974343----58-------899999999999
Q gi|254780197|r 183 DLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS----LQ-------HELFLKIVEIVE 251 (264)
Q Consensus 183 ~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS----l~-------~~~F~~Ii~~~~ 251 (264)
+-+.+..+|+. +++.| .+++|+=|+=++.+-+.+|+. ...||+.||=-+ .. .-.|..|.+.++
T Consensus 177 hs~~~~e~ik~-ik~~~----p~v~VIaGNVaT~~~a~~Li~-aGAD~VkVGiGpGsiCTTr~v~GvGvPq~tAi~d~~~ 250 (404)
T PRK06843 177 HSTRIIELVKT-IKNKY----PNLDLIAGNIVTKEAALDLIN-VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYE 250 (404)
T ss_pred CHHHHHHHHHH-HHHHC----CCCCEEECCCCCHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 21789999999-99767----996166303057999999998-1989999565478772566545868748999999999
No 165
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=37.99 E-value=33 Score=15.76 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=38.9
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 2220122233343321206777540731001042000221357999999999999833474799816
Q gi|254780197|r 65 GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131 (264)
Q Consensus 65 gAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiG 131 (264)
|.-+...+.+=.+-|+++..+|+.+++.|.++.-.+ .|....+.+-++.+.+.+ +|..|+=
T Consensus 90 G~pg~kDEPQH~~qG~iT~~lL~~~~Ipy~il~~~~-----~~~~~~i~~ai~~~~~~~-~P~allv 150 (361)
T TIGR03297 90 GEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTDN-----DEALAQIERALAHALATS-RPYALVV 150 (361)
T ss_pred CCCCCCCCCCHHHCCCHHHHHHHHCCCCEEECCCCH-----HHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 789998865404404202999997699879908656-----789999999999999979-9789998
No 166
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=37.78 E-value=33 Score=15.74 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=35.7
Q ss_pred CCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH-CCHHHHHHHHHHHHH
Q ss_conf 430886277898789999668989688974343-588999999999999
Q gi|254780197|r 205 KMRILYGGSVDVANAEDFSLIENIDGLLVGGAS-LQHELFLKIVEIVER 252 (264)
Q Consensus 205 ~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS-l~~~~F~~Ii~~~~~ 252 (264)
..+++|||.+...-...-+....-|=+-+|..- =|++.+.+++..+++
T Consensus 191 ~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~~~k~ 239 (240)
T COG1646 191 DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVEAIKS 239 (240)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCEEEECCEEECCHHHHHHHHHHHHC
T ss_conf 5508985884989999999971799899770020087889999998605
No 167
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=37.55 E-value=34 Score=15.72 Aligned_cols=136 Identities=21% Similarity=0.142 Sum_probs=82.4
Q ss_pred CCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHH
Q ss_conf 33433212067775407310010420002213579999999999998334747998165520333498000111002221
Q gi|254780197|r 74 YGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCS 153 (264)
Q Consensus 74 ~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~ 153 (264)
.-+-||.+-++|..+.|++|+-|= ---++++|..-++.|.+.|..+.+=. -...+.+-..++++..
T Consensus 64 Kt~D~G~~e~~ma~~aGAd~~tV~-------g~A~~~TI~~~i~~A~~~~~~v~iDl-------~~~~~~~~~~~~l~~~ 129 (217)
T COG0269 64 KTADAGAIEARMAFEAGADWVTVL-------GAADDATIKKAIKVAKEYGKEVQIDL-------IGVWDPEQRAKWLKEL 129 (217)
T ss_pred EECCHHHHHHHHHHHCCCCEEEEE-------ECCCHHHHHHHHHHHHHCCCEEEEEE-------ECCCCHHHHHHHHHHH
T ss_conf 322404899999997389879998-------04888999999999998398699985-------1689999999999971
Q ss_pred HHCCCCCCCCEEEEC-HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 000000134113205-1353045576431124554467999999633224164308862778987899996689896889
Q gi|254780197|r 154 LPSEFKSSVPVIAYE-PIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLL 232 (264)
Q Consensus 154 l~~~~~~~~~iIAYE-PvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~L 232 (264)
++ -++.|- ++=+==+|+.++-++++++ |+... ...++=-.|.++|+++.++..++ .|=|-
T Consensus 130 --gv-----d~~~~H~g~D~q~~G~~~~~~~l~~i----k~~~~-------~g~~vAVaGGI~~~~i~~~~~~~-~~ivI 190 (217)
T COG0269 130 --GV-----DQVILHRGRDAQAAGKSWGEDDLEKI----KKLSD-------LGAKVAVAGGITPEDIPLFKGIG-ADIVI 190 (217)
T ss_pred --CC-----CEEEEEECCCHHHHCCCCCHHHHHHH----HHHHC-------CCCEEEEECCCCHHHHHHHHCCC-CCEEE
T ss_conf --89-----78999704347650899417789999----98623-------68359986687887889986489-97999
Q ss_pred ECHHHCCHHH
Q ss_conf 7434358899
Q gi|254780197|r 233 VGGASLQHEL 242 (264)
Q Consensus 233 VG~ASl~~~~ 242 (264)
||||=.++.+
T Consensus 191 vGraIt~a~d 200 (217)
T COG0269 191 VGRAITGAKD 200 (217)
T ss_pred ECCHHCCCCC
T ss_conf 8822148999
No 168
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.77 E-value=35 Score=15.64 Aligned_cols=54 Identities=11% Similarity=0.215 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 431124554467999999633224164308862778987899996689896889743435889
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
-+|+++.++...++. ..+++.+---|.+|++|+.++.. .+||.+=+|..-+++.
T Consensus 210 ~~~e~~k~~v~~~~~--------~~~~v~ieaSGGI~~~ni~~yA~-~GvD~Is~g~lth~a~ 263 (272)
T PRK05848 210 MSVEETKEIVAYRNA--------NYPHVLLEASGNISLETINAYAK-SGVDAISSGSLIHQAT 263 (272)
T ss_pred CCHHHHHHHHHHHHC--------CCCCEEEEEECCCCHHHHHHHHH-CCCCEEECCHHHCCCC
T ss_conf 999999999998746--------48877999979998999999996-5999998797767993
No 169
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=36.40 E-value=35 Score=15.61 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=21.2
Q ss_pred EEECCHHCCCCCC--CCHHHHHHHHHHHHHC--CCCEE
Q ss_conf 0104200022135--7999999999999833--47479
Q gi|254780197|r 94 VILGHSERRIGHR--EDSYVVQSKVKSACNA--GLYPI 127 (264)
Q Consensus 94 viiGHSERR~~~~--E~d~~I~~K~~~al~~--~l~pI 127 (264)
-.=|||.||..|- +|-..|-..+....++ +++++
T Consensus 115 ~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~ 152 (518)
T COG0029 115 REGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVL 152 (518)
T ss_pred EECCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 10135775578856876089999999998448995898
No 170
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=36.13 E-value=36 Score=15.58 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 43112455446799999963322416430886277898789999668989688974343588
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
.+|+++......+|. ...+.....+++.|..=|+++++|++++.... +|.+=||..-.++
T Consensus 214 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~SGgi~~~~i~~~a~~g-vd~i~iG~~~~~~ 273 (281)
T cd00516 214 GSPEELDPAVLILKA-RAHLDGKGLPRVKIEASGGLDEENIRAYAETG-VDVFGVGTLLHSA 273 (281)
T ss_pred CCHHHHHHHHHHHHH-HHHHHHCCCCCEEEEEECCCCHHHHHHHHHCC-CCEEEECCCCCCC
T ss_conf 995889999999999-98763257897799997999999999999679-8999938221788
No 171
>pfam00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Probab=36.02 E-value=36 Score=15.57 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=32.8
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 0455764311245544679999996332241643088627789878999966898968897
Q gi|254780197|r 173 IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLV 233 (264)
Q Consensus 173 IGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LV 233 (264)
=|||++-+-+.+.+ +.. ...|++-.|..||+|+.+.++.-+-.|+=|
T Consensus 127 GGtG~~fdw~~~~~-------~~~-------~~~~~~LAGGL~~~NV~~ai~~~~p~gVDv 173 (195)
T pfam00697 127 GGTGKLFDWSLISK-------LLL-------SGLPVILAGGLTPENVSEAIQTLGPAGVDV 173 (195)
T ss_pred CCCCCCCCHHHHHH-------HHH-------CCCCEEEECCCCHHHHHHHHHHCCCCEEEE
T ss_conf 98877548999865-------552-------168789946889899999998529989994
No 172
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=35.54 E-value=36 Score=15.52 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC--HHHCCCEEEEC---CCCCHH----HHHHHHCCCCCCEEEECHHHC--CHHHHH
Q ss_conf 5764311245544679999996332--24164308862---778987----899996689896889743435--889999
Q gi|254780197|r 176 GRVPAVVDLEKIHSFVRRILLDRFP--EEGQKMRILYG---GSVDVA----NAEDFSLIENIDGLLVGGASL--QHELFL 244 (264)
Q Consensus 176 G~~a~~~~i~~~~~~Ir~~l~~~~~--~~~~~i~ilYG---GSV~~~----N~~~l~~~~~iDG~LVG~ASl--~~~~F~ 244 (264)
+-.++.+++++...-=..|...... ...+.-..||| |++.++ .++++.++ +.||+-|||-|+ +.+.+.
T Consensus 149 ~~~~~~~~~~~a~~rT~rWa~r~~~~~~~~~~~q~lfgiVQGG~~~dLR~~Sa~~l~~~-~f~G~aIGGlsvGe~~~~~~ 227 (366)
T PRK00112 149 PYPATYDYAKKSMERTLRWAERSRDAHDRLENGQALFGIVQGGVYEDLREESAKGLVEI-DFDGYAIGGLSVGEPKEEMY 227 (366)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHC-CCCEEECCCCCCCCCHHHHH
T ss_conf 99988999999999999999999999860788753887415766799999999999848-98488546745677899999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780197|r 245 KIVEIVERV 253 (264)
Q Consensus 245 ~Ii~~~~~~ 253 (264)
++++.+...
T Consensus 228 ~il~~~~~~ 236 (366)
T PRK00112 228 RILEHTAPL 236 (366)
T ss_pred HHHHHHHHH
T ss_conf 999998744
No 173
>PRK06427 phosphomethylpyrimidine kinase; Reviewed
Probab=35.49 E-value=19 Score=17.22 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=16.0
Q ss_pred ECCHHCCCCCC----CCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 04200022135----7999999999999833474799816
Q gi|254780197|r 96 LGHSERRIGHR----EDSYVVQSKVKSACNAGLYPIVCIG 131 (264)
Q Consensus 96 iGHSERR~~~~----E~d~~I~~K~~~al~~~l~pIlCiG 131 (264)
-+.-|-+.+.+ ..++.+..-.+...+.|-.-++==|
T Consensus 139 PN~~Ea~~L~g~~~~~~~d~~~~aa~~l~~~G~~~VlikG 178 (266)
T PRK06427 139 PNLPEAEALTGLPIADTEDEMKAAARALLALGCKAVLIKG 178 (266)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8889999982998899099999999999960898499947
No 174
>TIGR01334 modD modD protein; InterPro: IPR006242 The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=35.49 E-value=36 Score=15.51 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=57.6
Q ss_pred HHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 7540731001042000221357999999999999833--47479981655203334980001110022210000001341
Q gi|254780197|r 86 LADCGANFVILGHSERRIGHREDSYVVQSKVKSACNA--GLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP 163 (264)
Q Consensus 86 L~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~--~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~ 163 (264)
+--.|+.=+|+=-.|.|+.+++ ++.+..-+.+..+. .=+.++=+ ||.+|.. .++ ..-+++.+.++
T Consensus 150 iHR~glsETlLvFanHr~fl~D-~~Dw~gai~rLkq~APE~KItvEa-dt~~qa~-----~~l-----~a~PDilQLdK- 216 (277)
T TIGR01334 150 IHRAGLSETLLVFANHRTFLSD-NEDWSGAITRLKQQAPEKKITVEA-DTLKQAL-----AVL-----RADPDILQLDK- 216 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCCCCEEEEE-CCHHHHH-----HHH-----HCCCCEEECCC-
T ss_conf 6541158999999987864178-002789998877437877268740-5989999-----997-----44897663236-
Q ss_pred EEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCC
Q ss_conf 13205135304557643112455446799999963322416430886277898789999668
Q gi|254780197|r 164 VIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLI 225 (264)
Q Consensus 164 iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~ 225 (264)
=||+++.++++..+-. ...+.+=--|.||++|++++++.
T Consensus 217 ---------------FtpqQ~~~~~~~l~~~--------~~~~tLa~aGGiN~~n~a~Y~~~ 255 (277)
T TIGR01334 217 ---------------FTPQQVKELLELLKLL--------DKIITLAVAGGINKENVADYLEL 255 (277)
T ss_pred ---------------CCHHHHHHHHHHHHHH--------CCCCCEEEECCCCHHHHHHHHHC
T ss_conf ---------------8888999999999973--------76765340078787789999862
No 175
>PRK12425 fumarate hydratase; Provisional
Probab=35.30 E-value=26 Score=16.43 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=37.8
Q ss_pred HHCCCCEEEECCCCCHHHHC----CCCCCCCCCCHHHHHHCCCCCCCCEEEECHHH-------HHCCCCCCCCHHHHHHH
Q ss_conf 83347479981655203334----98000111002221000000134113205135-------30455764311245544
Q gi|254780197|r 120 CNAGLYPIVCIGETDEEYRS----GRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIW-------AIGTGRVPAVVDLEKIH 188 (264)
Q Consensus 120 l~~~l~pIlCiGE~~~e~~~----~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvW-------AIGtG~~a~~~~i~~~~ 188 (264)
....+.-|+.+|-|--+--- |+...-...|+...+. ++--+.+-++ |||||..+.+.+.+.++
T Consensus 172 Ka~ef~~iiK~GRThLqDAvP~tlGQef~~~a~~l~~~~~------rl~~~~~~l~~l~lGgTAVGTGina~~~f~~~~~ 245 (464)
T PRK12425 172 LSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAER------AIRAALPAVYELAQGGTAVGTGLNAPKGFAEAIA 245 (464)
T ss_pred HHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9998613301263404556736378899999999999999------9999999999852776211468888576999999
Q ss_pred HHHHHHH
Q ss_conf 6799999
Q gi|254780197|r 189 SFVRRIL 195 (264)
Q Consensus 189 ~~Ir~~l 195 (264)
+.+++..
T Consensus 246 ~~L~~~t 252 (464)
T PRK12425 246 AELAALS 252 (464)
T ss_pred HHHHHHH
T ss_conf 9999974
No 176
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=35.11 E-value=28 Score=16.21 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=20.0
Q ss_pred CHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 200022135799999999999983347479981655
Q gi|254780197|r 98 HSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGET 133 (264)
Q Consensus 98 HSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~ 133 (264)
|||+=.. .+...++++.+.+.| ..|+|||-|
T Consensus 226 H~E~~~I----~~~t~~~I~~ak~~g-~rIiAVGTT 256 (345)
T PRK00147 226 HSEWYEV----SQETADAINATKARG-GRVIAVGTT 256 (345)
T ss_pred CCEEEEE----CHHHHHHHHHHHHCC-CEEEEEECC
T ss_conf 6658998----999999999888649-869999252
No 177
>KOG2335 consensus
Probab=34.85 E-value=37 Score=15.45 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---CCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCH
Q ss_conf 579999999999998334747998---16552033349800011100222100000013411320513530455764311
Q gi|254780197|r 106 REDSYVVQSKVKSACNAGLYPIVC---IGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVV 182 (264)
Q Consensus 106 ~E~d~~I~~K~~~al~~~l~pIlC---iGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~ 182 (264)
-++-+.|..=+...-++-=.|+-| |++.++ +|.++++ +++ ..+ .+-+.+-=---|-=|. + ..|.
T Consensus 123 ~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~-----kTvd~ak-~~e--~aG---~~~ltVHGRtr~~kg~-~-~~pa 189 (358)
T KOG2335 123 MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE-----KTVDYAK-MLE--DAG---VSLLTVHGRTREQKGL-K-TGPA 189 (358)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHH-----HHHHHHH-HHH--HCC---CCEEEEECCCHHHCCC-C-CCCC
T ss_conf 238899999999998525998699998557678-----7899999-998--679---8689993655776288-8-8876
Q ss_pred HHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHHCC-HHHH
Q ss_conf 245544679999996332241643088627789-878999966898968897434358-8999
Q gi|254780197|r 183 DLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLVGGASLQ-HELF 243 (264)
Q Consensus 183 ~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~ASl~-~~~F 243 (264)
+.+ .+..||+.+ .++||+=-|.+. ..-+...+...++||+++|++.|. |--|
T Consensus 190 d~~-~i~~v~~~~--------~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335 190 DWE-AIKAVRENV--------PDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF 243 (358)
T ss_pred CHH-HHHHHHHHC--------CCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHCCCHHH
T ss_conf 779-999999747--------677089508857689999999975874688600000384120
No 178
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.34 E-value=26 Score=16.45 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHH----HHHHHHCCCCEEEECCCCCH
Q ss_conf 677754073100104200022135799999999----99998334747998165520
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSK----VKSACNAGLYPIVCIGETDE 135 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K----~~~al~~~l~pIlCiGE~~~ 135 (264)
..+|+|+|+++.=+|-+.|- ||.+-+.+- +-.+.++ .++++|-|=...
T Consensus 93 E~~Lks~GitV~RigG~nR~----ETa~~v~~~~~~~yp~af~n-~kvvvv~GwDy~ 144 (337)
T COG2247 93 ENALKSLGITVKRIGGANRY----ETAEKVAKFFREDYPNAFKN-VKVVVVYGWDYA 144 (337)
T ss_pred HHHHHHCCCEEEEECCCCHH----HHHHHHHHHHHHHCHHHHCC-EEEEEEECCCCH
T ss_conf 99998579579993376268----99999999997644233158-179999660227
No 179
>KOG1552 consensus
Probab=33.68 E-value=39 Score=15.33 Aligned_cols=64 Identities=19% Similarity=0.433 Sum_probs=36.2
Q ss_pred EEEEC-HHHHHCCCCCCC---CHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 13205-135304557643---11245544679999996332241643088627789878999966898968897
Q gi|254780197|r 164 VIAYE-PIWAIGTGRVPA---VVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLV 233 (264)
Q Consensus 164 iIAYE-PvWAIGtG~~a~---~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LV 233 (264)
++.|- --|..-+|++-+ .+|++.+-+.+|+ .++ . ++--||||=|+...-.-+++++..++|+-.
T Consensus 91 v~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~----~~g-~-~~~Iil~G~SiGt~~tv~Lasr~~~~alVL 158 (258)
T KOG1552 91 VVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRN----RYG-S-PERIILYGQSIGTVPTVDLASRYPLAAVVL 158 (258)
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH----HCC-C-CCEEEEEEECCCCHHHHHHHHCCCCCEEEE
T ss_conf 8998345555678975633405549999999997----559-9-861899974687235556762188725999
No 180
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=33.67 E-value=39 Score=15.33 Aligned_cols=99 Identities=10% Similarity=0.199 Sum_probs=61.1
Q ss_pred CCCCHHHHHHCCCCCCCCEEEECHHH---------------HHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCE-EE
Q ss_conf 11002221000000134113205135---------------304557643112455446799999963322416430-88
Q gi|254780197|r 146 LQKQLDCSLPSEFKSSVPVIAYEPIW---------------AIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMR-IL 209 (264)
Q Consensus 146 l~~Ql~~~l~~~~~~~~~iIAYEPvW---------------AIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~-il 209 (264)
+..++...+... .++.+++|+|.| .+.+|..|++.++.++...||+. +++ |+
T Consensus 158 l~~~~~~~l~~~--~~~~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~----------~v~~If 225 (282)
T cd01017 158 LDQEYRAKLAKA--KGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKS----------DVKYIF 225 (282)
T ss_pred HHHHHHHHHHCC--CCCCEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC----------CCCEEE
T ss_conf 999999987443--67856873533789998669848654334888899999999999999985----------998999
Q ss_pred ECCCCCHHHHHHHHCCCCCCEEE---ECHHHC----CHHHHHHHHHHHHHHHHH
Q ss_conf 62778987899996689896889---743435----889999999999999998
Q gi|254780197|r 210 YGGSVDVANAEDFSLIENIDGLL---VGGASL----QHELFLKIVEIVERVYVD 256 (264)
Q Consensus 210 YGGSV~~~N~~~l~~~~~iDG~L---VG~ASl----~~~~F~~Ii~~~~~~~~~ 256 (264)
+-=.+++.-++.+.+.-++.-+- +++.+. ..+.|.++.+.--++..+
T Consensus 226 ~e~~~~~~~~~~ia~e~g~~v~~l~pl~~~~~~~~~~~~~Y~~~m~~N~~~i~~ 279 (282)
T cd01017 226 FEENASSKIAETLAKETGAKLLVLNPLETLTKEEIDDGKDYFSLMKENLETLKR 279 (282)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 818999099999999819967854476666523488736699999999999999
No 181
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit; InterPro: IPR012718 Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=33.62 E-value=35 Score=15.63 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHH
Q ss_conf 1124554467999999633224164308862778987899
Q gi|254780197|r 181 VVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAE 220 (264)
Q Consensus 181 ~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~ 220 (264)
.=-|+|+-+-||+.++-.-+ --.+-||+|||.-.+=.|+
T Consensus 396 ~mii~EA~RsihDAlCv~RN-li~~~~iVYGGGaaEi~cS 434 (541)
T TIGR02343 396 KMIIEEAKRSIHDALCVVRN-LIKNSRIVYGGGAAEISCS 434 (541)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCHHHHHHH
T ss_conf 02457778877667889886-5248844764877999999
No 182
>pfam08543 Phos_pyr_kin Phosphomethylpyrimidine kinase. This enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes.
Probab=33.30 E-value=25 Score=16.57 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=51.2
Q ss_pred CCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCC-CCCCCCCCCCCCHHHHHH-H--CCCCEEECCHHCCCCCCC---C
Q ss_conf 57711999689655999999732576310222012-223334332120677754-0--731001042000221357---9
Q gi|254780197|r 36 SCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCH-IAEYGPYTGDISANMLAD-C--GANFVILGHSERRIGHRE---D 108 (264)
Q Consensus 36 ~~~veivi~Pp~~~L~~~~~~~~~s~I~igAQnv~-~~~~GA~TGeiSa~mL~d-~--g~~~viiGHSERR~~~~E---~ 108 (264)
.+.+++.+.++.-.+..+.+.++..++.+---=+- ..+.+.+..+-..+.+++ + -++.+.-++.|-+.+.+. +
T Consensus 61 ~~aIKiG~L~s~~~i~~v~~~l~~~~~~vV~DPVl~s~~g~~l~~~~~~~~~~~~Llp~adviTPN~~Ea~~L~g~~~~~ 140 (246)
T pfam08543 61 VDAVKTGMLGSAEIIEAVAEKLDKYGVPVVLDPVMVAKSGDSLLDPDAIEALREELLPLATLITPNLPEAEALTGIKIKT 140 (246)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
T ss_conf 78899998588899999999997179999988847719998530558999999986412410079999999981899999
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 999999999998334747998165
Q gi|254780197|r 109 SYVVQSKVKSACNAGLYPIVCIGE 132 (264)
Q Consensus 109 d~~I~~K~~~al~~~l~pIlCiGE 132 (264)
.+.+..-.+..++.|-.-|+=-|-
T Consensus 141 ~~~~~~~a~~L~~~G~~~VlitGg 164 (246)
T pfam08543 141 LEDMKEAAKKLLALGAKAVLIKGG 164 (246)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999998535987999547
No 183
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=33.09 E-value=40 Score=15.27 Aligned_cols=50 Identities=26% Similarity=0.146 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 43321206777540731001042000221357999999999999833474799
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIV 128 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIl 128 (264)
.|-|.|-...++..|+++|+|==+|-..+ .|.....-.+.|.++||.+=.
T Consensus 15 ~~qg~IdW~~vk~~gi~Fv~iKATEG~~~---~D~~f~~n~~~A~~aGl~vGa 64 (190)
T cd06419 15 QDDGYIDFNSLQSNGISFVYLRATQGASY---FDDNFLSNFSRAQGTGLSVGV 64 (190)
T ss_pred CCCCCCCHHHHHHCCCEEEEEEEECCCCC---CCHHHHHHHHHHHHCCCCEEE
T ss_conf 98896598999868982999995079875---786799999999977992789
No 184
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.06 E-value=40 Score=15.27 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=19.6
Q ss_pred CCCCEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 989688974343588999999999999
Q gi|254780197|r 226 ENIDGLLVGGASLQHELFLKIVEIVER 252 (264)
Q Consensus 226 ~~iDG~LVG~ASl~~~~F~~Ii~~~~~ 252 (264)
-+.+|+.-|-+..-|+.+.+|.+.+.+
T Consensus 199 ~Ga~G~i~~~~n~~p~~~~~l~~~~~~ 225 (294)
T PRK04147 199 AGADGAIGSTYNVNGWRARQIFEAAKA 225 (294)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHC
T ss_conf 799699944798678999999999987
No 185
>pfam04095 NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase (EC:2.4.2.11) is the rate limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also includes Pre-B cell enhancing factor that is a cytokine. This family is related to Quinolinate phosphoribosyltransferase pfam01729.
Probab=32.86 E-value=40 Score=15.25 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCH--H-HCCCEEEECCCCCHHHHHHHHCC----CCCCEEEECHHHCC
Q ss_conf 7643112455446799999963322--4-16430886277898789999668----98968897434358
Q gi|254780197|r 177 RVPAVVDLEKIHSFVRRILLDRFPE--E-GQKMRILYGGSVDVANAEDFSLI----ENIDGLLVGGASLQ 239 (264)
Q Consensus 177 ~~a~~~~i~~~~~~Ir~~l~~~~~~--~-~~~i~ilYGGSV~~~N~~~l~~~----~~iDG~LVG~ASl~ 239 (264)
.=++.-+.......+|+.+.+.-.+ . .+.++|+||.+.+.+-+.+|.+. .-.|.|=||+.-+.
T Consensus 115 vR~DSGD~~~~~~~~~~~~~~~g~~~~k~~~~~~Ii~sd~Lde~~i~~l~~~~~~~~~~~~FGiGt~L~t 184 (243)
T pfam04095 115 VRPDSGDPVEWGEKLIAHFGSTNIDGYKVLNTKRLIFSDGLDVEKIIEILEHLKGNGFNIAFGIGTNLTQ 184 (243)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEE
T ss_conf 6458887689999999999973998556788269997799999999999999975487058851643130
No 186
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=32.26 E-value=41 Score=15.19 Aligned_cols=190 Identities=19% Similarity=0.225 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEC----C-H--HHH--HHHHHHHCCCCCCHHHHHCCCCC---------CCCCCCCC
Q ss_conf 99999999995222345771199968----9-6--559--99999732576310222012223---------33433212
Q gi|254780197|r 20 LSLERIQKIVEGIRRNSCCIDVAICP----P-A--TLI--YESSRLCKTSSVIIGAQDCHIAE---------YGPYTGDI 81 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~veivi~P----p-~--~~L--~~~~~~~~~s~I~igAQnv~~~~---------~GA~TGei 81 (264)
+++....+.+..++...-.-.|...- + . .|+ ..++..+-..||.-+|-=||.-+ .||-|+.+
T Consensus 78 EAi~~iA~kL~~I~e~YGp~~Igf~~ssr~tGNEe~Y~~QKlAR~~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~s~~~ 157 (694)
T TIGR01591 78 EAISYIAKKLKEIKEKYGPDSIGFIASSRITGNEENYLLQKLARAVLGTNNVDNCARVCHEPSVAGLKQTVGIGAMSNTI 157 (694)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999886214832144420378875236789999999985037745545403787899999762455335520
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCHHHHCCCCC--CC-------CCCCHH
Q ss_conf 067775407310010420002213579999999999998-33474799816552033349800--01-------110022
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSAC-NAGLYPIVCIGETDEEYRSGRTF--EV-------LQKQLD 151 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al-~~~l~pIlCiGE~~~e~~~~~~~--~~-------l~~Ql~ 151 (264)
+- +.+. =--+++||+= -|+.=+|.+|+.+|+ .+|-+.|+| +-|+....+ ++ ++.=.+
T Consensus 158 ~~--ie~a-~~ivi~G~N~-----~esHPvv~~~l~~AKk~nGaKiiV~-----DpR~t~taksahi~AD~~i~~k~GTd 224 (694)
T TIGR01591 158 SD--IENA-DLIVIIGANP-----AESHPVVASKLMRAKKRNGAKIIVI-----DPRKTETAKSAHIIADLFIPLKPGTD 224 (694)
T ss_pred HH--HHCC-CEEEEECCCC-----CCCCHHHHHHHHHHHHHCCCEEEEE-----CCCCCCHHHHHHHCCCEEEECCCCHH
T ss_conf 34--4327-7589975676-----5554368999999985089789997-----58886023221110110651799708
Q ss_pred HHHH----CCC----------CCCCC-EEEECHHHHHCCCCCCCCHHHHHH----HHHHHHHHHHHCCHHHCCCEEEECC
Q ss_conf 2100----000----------01341-132051353045576431124554----4679999996332241643088627
Q gi|254780197|r 152 CSLP----SEF----------KSSVP-VIAYEPIWAIGTGRVPAVVDLEKI----HSFVRRILLDRFPEEGQKMRILYGG 212 (264)
Q Consensus 152 ~~l~----~~~----------~~~~~-iIAYEPvWAIGtG~~a~~~~i~~~----~~~Ir~~l~~~~~~~~~~i~ilYGG 212 (264)
..|- ++. -.+++ +--||=.=.+=.+ -=|||.++++ ...||+ +++.|- ++.+.-|+||=
T Consensus 225 ial~na~a~viI~egL~Dk~Fi~~R~~W~~F~E~r~~V~~-~yTpE~vE~ITgV~~d~Ir~-~A~~yA-~a~~~Ai~wGl 301 (694)
T TIGR01591 225 IALLNAVANVIIEEGLYDKEFIEKRTDWEGFEEFREIVKG-KYTPEYVEKITGVPADLIRE-IARMYA-KAGSAAILWGL 301 (694)
T ss_pred HHHHHHHHHEEECCCCCCHHHHHHHCCCCCHHHHHHHHCC-CCCHHHCCCCCCCCHHHHHH-HHHHHH-CCCCEEEEECC
T ss_conf 9999732002422786166889751487853788877504-78753222125788889999-999983-58967999555
Q ss_pred CCCH-----HHHHHHHCC
Q ss_conf 7898-----789999668
Q gi|254780197|r 213 SVDV-----ANAEDFSLI 225 (264)
Q Consensus 213 SV~~-----~N~~~l~~~ 225 (264)
.|+. +|...+.++
T Consensus 302 GvTq~~~Gv~tV~~~~nL 319 (694)
T TIGR01591 302 GVTQHSQGVETVMALANL 319 (694)
T ss_pred CCEEEHHHHHHHHHHHHH
T ss_conf 020001355699999999
No 187
>KOG3859 consensus
Probab=32.20 E-value=32 Score=15.87 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 7999999999999833474799816552033
Q gi|254780197|r 107 EDSYVVQSKVKSACNAGLYPIVCIGETDEEY 137 (264)
Q Consensus 107 E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~ 137 (264)
.+|+.-..+++... ++-.|..-||-+.+..
T Consensus 216 PtDdetva~~N~~m-n~~lPFAVvGSte~vK 245 (406)
T KOG3859 216 PTDDETVAKANSEM-NHSLPFAVVGSTEEVK 245 (406)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCHHHHH
T ss_conf 65277898888876-3378626765237654
No 188
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=31.86 E-value=42 Score=15.14 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 55446799999963322416430886277898789999668989688974
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVG 234 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG 234 (264)
+.+...||.+ ++.| ++++|+=|.-++.+.+.+|+.. ..||+.||
T Consensus 254 ~~vi~~ik~i-k~~~----~~v~viaGNv~T~~~a~~L~~a-GaD~vkVG 297 (486)
T PRK05567 254 EGVLDRVREI-KAKY----PDVQIIAGNVATAEAARALIEA-GADAVKVG 297 (486)
T ss_pred HHHHHHHHHH-HHCC----CCCCEEEEEECHHHHHHHHHHC-CCCEEEEC
T ss_conf 7789999999-7407----8773687512019999999972-98769965
No 189
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.80 E-value=21 Score=17.03 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 31001042000221357999999999999833474799816
Q gi|254780197|r 91 ANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131 (264)
Q Consensus 91 ~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiG 131 (264)
++--..|-|||+..-++ ...-+-+..+...|.+|..|..
T Consensus 37 VelifFGpse~~la~~~--~~~l~~l~~~~s~g~~p~AC~~ 75 (113)
T COG3370 37 VELIFFGPSEKLLAKND--GDSLKMLQELRSLGIKPLACKV 75 (113)
T ss_pred EEEEEECCHHHHHHHCC--HHHHHHHHHHHHCCCCCHHHHH
T ss_conf 68999772599998254--6799999999976986217898
No 190
>TIGR00715 precor6x_red precorrin-6x reductase; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y , .; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process.
Probab=31.67 E-value=42 Score=15.13 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=60.5
Q ss_pred CCCCCEEEEECCHHHHHHHHHH-HCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHH
Q ss_conf 4577119996896559999997-325763102220122233343321206777540731001042000221357999999
Q gi|254780197|r 35 NSCCIDVAICPPATLIYESSRL-CKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQ 113 (264)
Q Consensus 35 ~~~~veivi~Pp~~~L~~~~~~-~~~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~ 113 (264)
....+-+.+.|.-..|....++ +..++|- ...|+|--|.--..|+|..|+-++-=-|=-.=- ..
T Consensus 152 ~~~~v~~rvlP~~~al~~~~~~G~p~~~Iv--------a~~G~~~~~~e~aLlr~y~~~avvTK~SG~~Gg-------~~ 216 (260)
T TIGR00715 152 DKEKVIVRVLPDGTALEKALKLGLPSDRIV--------AMRGPFSEELEKALLREYRIDAVVTKESGEKGG-------LK 216 (260)
T ss_pred CCCEEEEEECCCCHHHHHHHHCCCCCCCEE--------ECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCC-------CH
T ss_conf 772799998888023799996589811278--------727897713678888862069689857688677-------45
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999998334747998
Q gi|254780197|r 114 SKVKSACNAGLYPIVC 129 (264)
Q Consensus 114 ~K~~~al~~~l~pIlC 129 (264)
.|+..|.+.|+.+|+-
T Consensus 217 ~K~~~A~~lgi~vi~i 232 (260)
T TIGR00715 217 EKVEAAEALGIKVILI 232 (260)
T ss_pred HHHHHHHHCCCEEEEE
T ss_conf 8889998569428998
No 191
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=31.36 E-value=42 Score=15.09 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 99999999998334747998165
Q gi|254780197|r 110 YVVQSKVKSACNAGLYPIVCIGE 132 (264)
Q Consensus 110 ~~I~~K~~~al~~~l~pIlCiGE 132 (264)
+.+..++.+..+-...|..+|||
T Consensus 43 ~ei~a~~~~i~~v~~~~~~rVG~ 65 (384)
T pfam03599 43 ELLKARRERIEDVMFDPKKRVGE 65 (384)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 77999999987521322222212
No 192
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=31.10 E-value=43 Score=15.07 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 4311245544679999996332241643088627789878999966898968897434358
Q gi|254780197|r 179 PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 179 a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
-+|+++.++...+|+ ++.+-=-|.+|++|+.++.. .+||.+=+|.--..
T Consensus 211 ~spe~~~~~v~~~~~-----------~v~ieaSGgIn~~ni~~ya~-~GvD~Is~g~lt~~ 259 (268)
T cd01572 211 MSPEELREAVALLKG-----------RVLLEASGGITLENIRAYAE-TGVDYISVGALTHS 259 (268)
T ss_pred CCHHHHHHHHHHHCC-----------CEEEEEECCCCHHHHHHHHH-CCCCEEECCHHHCC
T ss_conf 999999999998669-----------56999989998999999997-59999983854369
No 193
>pfam02750 Synapsin_C Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown.
Probab=30.76 E-value=17 Score=17.62 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCC-CEEECCHHCCC--CCCCCHHHHHHHHHHHHHCC
Q ss_conf 6559999997325763102220122233343321206777540731-00104200022--13579999999999998334
Q gi|254780197|r 47 ATLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGAN-FVILGHSERRI--GHREDSYVVQSKVKSACNAG 123 (264)
Q Consensus 47 ~~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~-~viiGHSERR~--~~~E~d~~I~~K~~~al~~~ 123 (264)
|-.|....+.+-..++-|--|--+..-. +|+..-.-. -+=+||+.+-. .--|+.... +-+...+ -
T Consensus 16 f~~L~~i~k~lG~e~FPLIeQtyypn~k---------em~~~~~fPvVvKvGhah~G~GKvkven~~~f-qD~~s~v--a 83 (203)
T pfam02750 16 FAQLIQIQKKLGAEKFPLIEQTYYPNHK---------EMLTTPTFPVVVKIGHAHSGMGKVKVDNHHDF-QDIASVV--A 83 (203)
T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCHH---------HHCCCCCCCEEEEECCCCCCEEEEEECCHHHH-HHHHHHH--H
T ss_conf 9999999998486667753000269877---------74258898889997541562358996077788-8887577--2
Q ss_pred CCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECH-----HHHHCCCCCCCCHHHHHHHHHHHHHH---
Q ss_conf 7479981655203334980001110022210000001341132051-----35304557643112455446799999---
Q gi|254780197|r 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEP-----IWAIGTGRVPAVVDLEKIHSFVRRIL--- 195 (264)
Q Consensus 124 l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEP-----vWAIGtG~~a~~~~i~~~~~~Ir~~l--- 195 (264)
++..+|.-|+.-+..-+.+.+-+-+- .=||.- -|--.||. |-.|++ .+...-|.|+
T Consensus 84 ~~~~y~T~EPfid~kyDiriQKIG~~--------------ykay~R~sISgnWK~NtGS-amLEqi-~mteryK~WvD~~ 147 (203)
T pfam02750 84 LTKTYATTEPFIDSKYDIRVQKIGNN--------------YKAYMRTSISGNWKANTGS-AMLEQI-AMSERYKLWVDTC 147 (203)
T ss_pred HCCCEEEECCCCCCCEEEEEEEHHHH--------------HHHHEECCCCCCCCCCCCH-HHHHHH-HHHHHHHHHHHHH
T ss_conf 13635886145454255885200004--------------4766122003785447037-888650-2368999999999
Q ss_pred HHHCCH-HHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHH
Q ss_conf 963322-4164308862778987899996689896889743435889999999999
Q gi|254780197|r 196 LDRFPE-EGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIV 250 (264)
Q Consensus 196 ~~~~~~-~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~ 250 (264)
+++|+- +--.+.++-|- +.-+-+.+..+..=.|+|..- .|+-..|.+.+
T Consensus 148 S~lFGGLdIcav~ai~~K----dGkeyIiEvnds~m~L~gd~q--eeDr~~IadlV 197 (203)
T pfam02750 148 SEMFGGLDICAVEALHGK----DGRDYIIEVMDSSMPLIGEHQ--EEDRQLIAELV 197 (203)
T ss_pred HHHCCCCEEEEEEEEECC----CCCEEEEEECCCCCCCCCCCH--HHHHHHHHHHH
T ss_conf 987389307999877768----887568996265441222017--88999999999
No 194
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=30.75 E-value=43 Score=15.03 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=19.8
Q ss_pred CCCCEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 989688974343588999999999999
Q gi|254780197|r 226 ENIDGLLVGGASLQHELFLKIVEIVER 252 (264)
Q Consensus 226 ~~iDG~LVG~ASl~~~~F~~Ii~~~~~ 252 (264)
-.-+|+.-|.+.+-|+.+.++.+.+++
T Consensus 197 ~Ga~G~is~~~n~~P~~~~~i~~~~~~ 223 (292)
T PRK03170 197 LGGVGVISVTANVAPKEMAEMCDAALA 223 (292)
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 439869984476448999999999987
No 195
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.72 E-value=44 Score=15.03 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=36.5
Q ss_pred EEEECCCCCHHHHHHHHCC-CCCCEEEECHHHCCHHHHHHHHHHHHHH
Q ss_conf 0886277898789999668-9896889743435889999999999999
Q gi|254780197|r 207 RILYGGSVDVANAEDFSLI-ENIDGLLVGGASLQHELFLKIVEIVERV 253 (264)
Q Consensus 207 ~ilYGGSV~~~N~~~l~~~-~~iDG~LVG~ASl~~~~F~~Ii~~~~~~ 253 (264)
-|+||-++.+......... ...|-+||=|-||...-+..++..+.+-
T Consensus 134 VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~Paa~l~~~a~~~ 181 (206)
T cd01410 134 IVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARA 181 (206)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCEECCHHHHHHHHHHC
T ss_conf 887356599899999999998499899976795552276789999975
No 196
>cd06137 DEDDh_RNase This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong preference for single-stranded RNA.
Probab=30.71 E-value=27 Score=16.29 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=6.5
Q ss_pred HCCCCEEECCHH
Q ss_conf 073100104200
Q gi|254780197|r 89 CGANFVILGHSE 100 (264)
Q Consensus 89 ~g~~~viiGHSE 100 (264)
++-+.++||||=
T Consensus 81 i~~~tIlVGH~L 92 (161)
T cd06137 81 IDPDTILVGHSL 92 (161)
T ss_pred CCCCCEEEECCH
T ss_conf 589967985101
No 197
>KOG0926 consensus
Probab=30.21 E-value=17 Score=17.52 Aligned_cols=104 Identities=28% Similarity=0.352 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEE-ECHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999999983347479981655203334980001110022210000001341132-0513530455764311245544679
Q gi|254780197|r 113 QSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIA-YEPIWAIGTGRVPAVVDLEKIHSFV 191 (264)
Q Consensus 113 ~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIA-YEPvWAIGtG~~a~~~~i~~~~~~I 191 (264)
.+++.-++..+..+|+| ||| -.|+|-++-+=-.+.++......+.-+|+ -|| -++|...-++.|..-
T Consensus 261 Eq~IMEaIn~n~vvIIc-GeT----GsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqP------RRVAaiamAkRVa~E- 328 (1172)
T KOG0926 261 EQRIMEAINENPVVIIC-GET----GSGKTTQVPQFLYEAGFASEQSSSPGMIGITQP------RRVAAIAMAKRVAFE- 328 (1172)
T ss_pred HHHHHHHHHCCCEEEEE-CCC----CCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCC------HHHHHHHHHHHHHHH-
T ss_conf 99999986228749995-488----888644341899871347766799870540572------278999999999998-
Q ss_pred HHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 9999963322416430886277898789999668989688974343
Q gi|254780197|r 192 RRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237 (264)
Q Consensus 192 r~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~AS 237 (264)
|..+-++.+- .|=|-|-++++..-.|+. ||+|.---.
T Consensus 329 ---L~~~~~eVsY--qIRfd~ti~e~T~IkFMT----DGVLLrEi~ 365 (1172)
T KOG0926 329 ---LGVLGSEVSY--QIRFDGTIGEDTSIKFMT----DGVLLREIE 365 (1172)
T ss_pred ---HCCCCCCEEE--EEEECCCCCCCCEEEEEC----CHHHHHHHH
T ss_conf ---5257641148--998536568874047740----238899988
No 198
>PRK13113 consensus
Probab=30.17 E-value=44 Score=14.97 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=59.9
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
...+++.|++.+||=--= +-|..+. ...+.++|+.+|.-|.-+-.+.. +..+.+. .+.
T Consensus 115 ~~~~~~~GvdGvIipDLP----~eE~~~~----~~~~~~~~l~~I~lvaPtt~~~R-----------i~~i~~~---a~g 172 (263)
T PRK13113 115 LAEAKEAGIDGLIVVDLP----PEEDSEL----CLPAQAAGLNFIRLATPTTDDRR-----------LPKVLQN---TSG 172 (263)
T ss_pred HHHHHHCCCCEEEECCCC----HHHHHHH----HHHHHHCCCCEEEEECCCCCHHH-----------HHHHHHC---CCC
T ss_conf 999877794369717999----7888999----99999779867999479999999-----------9999833---898
Q ss_pred C--EEEECHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHHC
Q ss_conf 1--13205135304557-64311245544679999996332241643088627789-87899996689896889743435
Q gi|254780197|r 163 P--VIAYEPIWAIGTGR-VPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLVGGASL 238 (264)
Q Consensus 163 ~--iIAYEPvWAIGtG~-~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~ASl 238 (264)
. .+++-.+ ||. .+...++.+..+.||+. .++|++-|=.++ ++-++.+.+. .||+-||+|-.
T Consensus 173 FiY~Vs~~Gv----TG~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~~~~~~~~--ADGvIVGSa~v 237 (263)
T PRK13113 173 FVYYVSITGI----TGAAAAQAADVAPEVARIKAA---------TDLPVIVGFGITTPEAAQAIAGV--ADGCVVGSAIV 237 (263)
T ss_pred CEEEEECCCC----CCCCCCCHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHCC--CCEEEECHHHH
T ss_conf 4899834556----687755437799999999854---------79988998378998999999733--99999868999
Q ss_pred C
Q ss_conf 8
Q gi|254780197|r 239 Q 239 (264)
Q Consensus 239 ~ 239 (264)
+
T Consensus 238 ~ 238 (263)
T PRK13113 238 K 238 (263)
T ss_pred H
T ss_conf 9
No 199
>pfam11918 DUF3436 Domain of unknown function (DUF3436). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain is found associated with pfam03572. This domain has two conserved sequence motifs: DPRL and SYEP.
Probab=29.75 E-value=35 Score=15.58 Aligned_cols=43 Identities=23% Similarity=0.454 Sum_probs=22.0
Q ss_pred HHHCCCCCCCCEEEECHHHHHCCCCCCCCHHH--HHHHHHHHHHH
Q ss_conf 10000001341132051353045576431124--55446799999
Q gi|254780197|r 153 SLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDL--EKIHSFVRRIL 195 (264)
Q Consensus 153 ~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i--~~~~~~Ir~~l 195 (264)
+..+-.+.-+++|-|||-+-=..-..+....+ ++..+.|+..+
T Consensus 7 GVQ~tlnDpRL~iSYEP~~v~~p~~~p~~~~l~~EqL~a~lq~sI 51 (55)
T pfam11918 7 GVQSSLNDPRLVISYEPSYLEAPQQAPALPNLTPEQLLAVLQTSI 51 (55)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHE
T ss_conf 210545688658875898877788898898959999999998653
No 200
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=29.01 E-value=47 Score=14.84 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=79.6
Q ss_pred HHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 67775407310010420002213579999999999998334747998165520333498000111002221000000134
Q gi|254780197|r 83 ANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV 162 (264)
Q Consensus 83 a~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~ 162 (264)
.+...+.|++++.+ |-|..+.+.+-++...+.|.++-+-+ +-....+.+..=|. .++ -.
T Consensus 74 ~~~Fa~aGA~~I~v--------H~Ea~~h~~R~l~~Ik~~G~~AG~v~-------NP~TPl~~~~~~L~----~~D--~V 132 (216)
T TIGR01163 74 IEDFAEAGADIITV--------HAEATEHIHRLLQLIKELGAKAGIVL-------NPATPLEALEYVLE----DVD--LV 132 (216)
T ss_pred HHHHHHHCCCEEEE--------ECCCCCCHHHHHHHHHHCCCCEEEEE-------CCCCCHHHHHHHHH----HCC--EE
T ss_conf 88999708998998--------43776267999999997189706886-------79999878998987----629--89
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC--HHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 11320513530455764311245544679999996332--2416430886277898789999668989688974343588
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFP--EEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~--~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
++=-=+|=. +|+ .=|.++++.||+ +++... ....++.|-==|.||++|+.++.+ .+.|=+=.|+|=-..
T Consensus 133 LlMSVnPGF---gGQ----kFIP~~~~Kir~-~R~~id~~~~~~~~~ieVDGGv~~~ni~~~~~-AGAD~~VaGSaiF~~ 203 (216)
T TIGR01163 133 LLMSVNPGF---GGQ----KFIPETLEKIRE-LRKMIDKLELGLSILIEVDGGVNEDNIAEVAE-AGADILVAGSAIFGA 203 (216)
T ss_pred EEEEEECCC---CCC----CCHHHHHHHHHH-HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEEEEECC
T ss_conf 988760799---884----110578999999-99999860279955899717989767999997-589899983102088
Q ss_pred H
Q ss_conf 9
Q gi|254780197|r 241 E 241 (264)
Q Consensus 241 ~ 241 (264)
+
T Consensus 204 ~ 204 (216)
T TIGR01163 204 D 204 (216)
T ss_pred C
T ss_conf 8
No 201
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=28.81 E-value=16 Score=17.71 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=20.9
Q ss_pred CCCHHHHHHHH----------HHHHHHHHHCCHH-HCCCEEEECCC
Q ss_conf 43112455446----------7999999633224-16430886277
Q gi|254780197|r 179 PAVVDLEKIHS----------FVRRILLDRFPEE-GQKMRILYGGS 213 (264)
Q Consensus 179 a~~~~i~~~~~----------~Ir~~l~~~~~~~-~~~i~ilYGGS 213 (264)
++|++.+++|+ +.-..+..++++. +.++.||||=-
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlV 57 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLV 57 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 6889999999999999999986699999999998550588899999
No 202
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=28.39 E-value=35 Score=15.60 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=19.0
Q ss_pred HHCCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 3045576-4311245544679999996
Q gi|254780197|r 172 AIGTGRV-PAVVDLEKIHSFVRRILLD 197 (264)
Q Consensus 172 AIGtG~~-a~~~~i~~~~~~Ir~~l~~ 197 (264)
|+|||-+ +...+|.+.-..||+--..
T Consensus 221 AVGTGTvk~~K~~Ik~lQ~g~R~RA~~ 247 (401)
T TIGR02028 221 AVGTGTVKAAKDEIKKLQSGIRARAAD 247 (401)
T ss_pred EECCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 733531450507889998888787886
No 203
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=28.04 E-value=48 Score=14.74 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 6430886277898789999668989688974343588999999999999
Q gi|254780197|r 204 QKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIVER 252 (264)
Q Consensus 204 ~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~~~ 252 (264)
++..++ +|+- ...-+. -.-+.+|+.-|.+++-|+.+.+|.+.+.+
T Consensus 180 ~~~~v~-~G~d--~~~~~~-~~~Ga~G~i~~~~n~~p~~~~~i~~~~~~ 224 (288)
T cd00954 180 EDKLVL-NGFD--EMLLSA-LALGADGAIGSTYNVNGKRYRKIFEAFNA 224 (288)
T ss_pred CCCEEE-CCCH--HHHHHH-HHCCCCEEEECHHHHHHHHHHHHHHHHHC
T ss_conf 982461-6957--999999-98699899957678679999999999988
No 204
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=27.97 E-value=49 Score=14.73 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCH--HHCCCEEEEC---CCCCHH----HHHHHHCCCCCCEEEECHHHC--CHHHHHH
Q ss_conf 7643112455446799999963322--4164308862---778987----899996689896889743435--8899999
Q gi|254780197|r 177 RVPAVVDLEKIHSFVRRILLDRFPE--EGQKMRILYG---GSVDVA----NAEDFSLIENIDGLLVGGASL--QHELFLK 245 (264)
Q Consensus 177 ~~a~~~~i~~~~~~Ir~~l~~~~~~--~~~~i~ilYG---GSV~~~----N~~~l~~~~~iDG~LVG~ASl--~~~~F~~ 245 (264)
..++.+++++...--..|....... ....-..||| |++.++ .++.+ ..-+.||+-||| |+ ..+++.+
T Consensus 166 ~~~~~~~~~~s~~rT~rW~~r~~~~~~~~~~~q~lfgIVQGG~~~dLR~~sa~~l-~~~~fdGyaIGG-svge~~~~~~~ 243 (372)
T PRK01008 166 FHTDPTYFLQSCSRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCAFV-EDLPFDGSAIGG-SLGKNLQEMVE 243 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH-HCCCCCEEEECC-CCCCCHHHHHH
T ss_conf 9977999999999999999999999852975526874246788799999999998-627985388666-57657999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780197|r 246 IVEIVERV 253 (264)
Q Consensus 246 Ii~~~~~~ 253 (264)
+++.+...
T Consensus 244 il~~~~~~ 251 (372)
T PRK01008 244 VVDITTSN 251 (372)
T ss_pred HHHHHHHH
T ss_conf 99999846
No 205
>KOG3798 consensus
Probab=27.78 E-value=36 Score=15.58 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=22.6
Q ss_pred EEEECHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 132051353045576431124554467999
Q gi|254780197|r 164 VIAYEPIWAIGTGRVPAVVDLEKIHSFVRR 193 (264)
Q Consensus 164 iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~ 193 (264)
|=||||-|---. +--+|+++-++|..+|.
T Consensus 263 iGaYePrWfmK~-~HInPeEav~Ihkdv~a 291 (343)
T KOG3798 263 IGAYEPRWFMKS-QHINPEEAVEIHKDVRA 291 (343)
T ss_pred CCCCCCHHHCCC-CCCCHHHHHHHHHHHHH
T ss_conf 445683432454-46998999999887754
No 206
>pfam02682 AHS1 Allophanate hydrolase subunit 1. This family is the first subunit of allophanate hydrolase.
Probab=27.56 E-value=49 Score=14.68 Aligned_cols=67 Identities=15% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH---HH--CCCEEEECCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 134113205135304557643112455446799999963322---41--6430886277898789999668989688974
Q gi|254780197|r 160 SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPE---EG--QKMRILYGGSVDVANAEDFSLIENIDGLLVG 234 (264)
Q Consensus 160 ~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~---~~--~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG 234 (264)
...+.|-|+|. .-..+++.+.+++.+.+.... .. -.+||.|+|++.++ .+++.+.
T Consensus 49 ~~sllV~fd~~----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~IPV~Yd~~~gpD-L~~va~~--------- 108 (202)
T pfam02682 49 YRSLLVHFDPL----------VIDRAALLALLKALLAEAAAALAAPSRIIEIPVCYGGEFGPD-LEEVAEH--------- 108 (202)
T ss_pred CEEEEEEECCC----------CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCC-HHHHHHH---------
T ss_conf 30899997788----------899999999999998644322368984899976889966879-9999998---------
Q ss_pred HHHCCHHHHHHHH
Q ss_conf 3435889999999
Q gi|254780197|r 235 GASLQHELFLKIV 247 (264)
Q Consensus 235 ~ASl~~~~F~~Ii 247 (264)
.+|+.++++++.
T Consensus 109 -~gLs~~evI~~H 120 (202)
T pfam02682 109 -NGLSVEEVIRLH 120 (202)
T ss_pred -HCCCHHHHHHHH
T ss_conf -394999999998
No 207
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=27.38 E-value=43 Score=15.05 Aligned_cols=33 Identities=27% Similarity=0.088 Sum_probs=24.4
Q ss_pred CEEEECHHH-------HHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 113205135-------304557643112455446799999
Q gi|254780197|r 163 PVIAYEPIW-------AIGTGRVPAVVDLEKIHSFVRRIL 195 (264)
Q Consensus 163 ~iIAYEPvW-------AIGtG~~a~~~~i~~~~~~Ir~~l 195 (264)
+--+.+-++ |+|||.-+.+++...++..+++..
T Consensus 217 l~~~~~~l~~l~lGGTAVGTGlna~~~f~~~v~~~L~~~t 256 (471)
T PRK12273 217 LEEAAELLREVNLGATAIGTGINAPPGYAELVVKKLAEIT 256 (471)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999875368751004677888208999999999997
No 208
>PRK12616 pyridoxal kinase; Reviewed
Probab=27.06 E-value=21 Score=16.99 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=40.7
Q ss_pred CCCEEEEECCHHHHHHHHHHHCCCCCC-HHHHHC-CCCCCCCCCCCCCHHHHHH-H--CCCCEEECCHHCCCCCCC----
Q ss_conf 771199968965599999973257631-022201-2223334332120677754-0--731001042000221357----
Q gi|254780197|r 37 CCIDVAICPPATLIYESSRLCKTSSVI-IGAQDC-HIAEYGPYTGDISANMLAD-C--GANFVILGHSERRIGHRE---- 107 (264)
Q Consensus 37 ~~veivi~Pp~~~L~~~~~~~~~s~I~-igAQnv-~~~~~GA~TGeiSa~mL~d-~--g~~~viiGHSERR~~~~E---- 107 (264)
..+++.+.++--.+..+.+.++.-++. +----+ .....+.+.-+-..+.+++ + -++-+-=+..|-+.+.+.
T Consensus 76 ~aiKiGmL~s~~~i~~v~~~l~~~~~~~vV~DPVl~s~sG~~ll~~~~~~~l~~~L~P~a~liTPN~~Ea~~L~g~~~i~ 155 (270)
T PRK12616 76 DAMKTGMLPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIK 155 (270)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCHHHHHHHCCCCCCC
T ss_conf 77998144887889999999985899886884551257886437899999999998723828479879999872998679
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 999999999999833474799816
Q gi|254780197|r 108 DSYVVQSKVKSACNAGLYPIVCIG 131 (264)
Q Consensus 108 ~d~~I~~K~~~al~~~l~pIlCiG 131 (264)
+.+.+..-.+...+.|-.-++=-|
T Consensus 156 ~~~~~~~~a~~l~~~G~~~VlikG 179 (270)
T PRK12616 156 TVEQMKEAAKKIHELGAQYVLITG 179 (270)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999999970798799904
No 209
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=27.02 E-value=50 Score=14.62 Aligned_cols=143 Identities=22% Similarity=0.332 Sum_probs=75.7
Q ss_pred CCCCEEEEECCHHHHHHHHHHHC-CCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHH
Q ss_conf 57711999689655999999732-57631022201222333433212067775407310010420002213579999999
Q gi|254780197|r 36 SCCIDVAICPPATLIYESSRLCK-TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQS 114 (264)
Q Consensus 36 ~~~veivi~Pp~~~L~~~~~~~~-~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~ 114 (264)
...+||-+-.|. .+..+..+.+ ..++.+|+=.+...+ .+....+.|++|.+-=| =+.++++
T Consensus 30 i~~iEitl~t~~-a~~~i~~l~~~~~~~~iGaGTV~~~~--------~~~~a~~aGa~FivsP~--------~~~~v~~- 91 (190)
T cd00452 30 IRAIEITLRTPG-ALEAIRALRKEFPEALIGAGTVLTPE--------QADAAIAAGAQFIVSPG--------LDPEVVK- 91 (190)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCCEEEECCCCCHH--------HHHHHHHCCCCEEECCC--------CCHHHHH-
T ss_conf 988999678802-99999999986898089652347799--------99999985998997377--------9999999-
Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999833474799816552033349800011100222100000013411320513530455764311245544679999
Q gi|254780197|r 115 KVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRI 194 (264)
Q Consensus 115 K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~ 194 (264)
.|.++++-.+-=+- |-.|- ..=++.+. + ++=.=|.-+.| ..++|..
T Consensus 92 ---~a~~~~~~~iPGv~-TpsEi---------~~A~~~G~------~--~vK~FPa~~~G-------------~~~lkal 137 (190)
T cd00452 92 ---AANRAGIPLLPGVA-TPTEI---------MQALELGA------D--IVKLFPAEAVG-------------PAYIKAL 137 (190)
T ss_pred ---HHHHCCCCEECCCC-CHHHH---------HHHHHCCC------C--EEEECCCCCCC-------------HHHHHHH
T ss_conf ---99982996657879-99999---------99998799------9--89989551149-------------9999998
Q ss_pred HHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHH
Q ss_conf 996332241643088627789878999966898968897434
Q gi|254780197|r 195 LLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGA 236 (264)
Q Consensus 195 l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~A 236 (264)
+.-| .+++++==|.|+++|+.++++.. +.++=+|+.
T Consensus 138 -~~pf----p~~~~~ptGGI~~~N~~~yl~~g-v~avG~g~~ 173 (190)
T cd00452 138 -KGPF----PQVRFMPTGGVSLDNAAEWLAAG-VVAVGGGSL 173 (190)
T ss_pred -HCCC----CCCCEEEECCCCHHHHHHHHHCC-CEEEEECHH
T ss_conf -5548----99938996799988899999689-989995412
No 210
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=26.57 E-value=51 Score=14.57 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=7.9
Q ss_pred HHCCCCCCEEEECHHHCCHH
Q ss_conf 96689896889743435889
Q gi|254780197|r 222 FSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 222 l~~~~~iDG~LVG~ASl~~~ 241 (264)
++...++.++++|==|-+.+
T Consensus 292 ~mk~AGc~~v~~GiESgsq~ 311 (472)
T TIGR03471 292 VMKENGLRLLLVGYESGDQQ 311 (472)
T ss_pred HHHHHCCEEEEEECCCCCHH
T ss_conf 99983984899803758999
No 211
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390 This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP) is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=26.09 E-value=49 Score=14.71 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHCCCCC--CCCEEEEECCHHHHHHHHHHHCCCCCCH-HHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEE
Q ss_conf 99999999995222345--7711999689655999999732576310-22201222333433212067775407310010
Q gi|254780197|r 20 LSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCKTSSVII-GAQDCHIAEYGPYTGDISANMLADCGANFVIL 96 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--~~veivi~Pp~~~L~~~~~~~~~s~I~i-gAQnv~~~~~GA~TGeiSa~mL~d~g~~~vii 96 (264)
++...+.-.+..++... .+ +++..-=.||=..+.+. -++. |++=+.....|.|+++. ++-++|++|.+||
T Consensus 58 eE~~Rv~Pv~~~~~~~~~~~d-QC~~iSvDT~~a~Va~~----Al~~~Ga~iiNDv~G~~~dp~m-~~vaae~~~~~vl- 130 (268)
T TIGR01496 58 EELNRVVPVIKALREQYLFSD-QCVPISVDTYRAEVARA----ALEAFGADIINDVSGGQFDPDM-LEVAAEYGVPLVL- 130 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCHHHHHH----HHHHCCCCEEEECCCCCCCHHH-HHHHHHHCCCEEE-
T ss_conf 999988999999997448999-84147761882899999----9986798678604114668358-9999984898898-
Q ss_pred CCHHCC--CCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHH
Q ss_conf 420002--21357-999999999999833474799816552033349800011100222100000013411320513530
Q gi|254780197|r 97 GHSERR--IGHRE-DSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAI 173 (264)
Q Consensus 97 GHSERR--~~~~E-~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAI 173 (264)
=|+-.. +.... ..+.|-. +-..|+.+|++..+..... +++|+ -| .|
T Consensus 131 MH~~g~P~~~q~~~~Y~dv~~--------------------------e~~~fl~~~~~~~~~~Gv~-~~I~L--DP--G~ 179 (268)
T TIGR01496 131 MHMRGTPETMQENPRYEDVVE--------------------------EVLRFLEARAEELLAAGVA-ERIIL--DP--GI 179 (268)
T ss_pred ECCCCCCCCCCCCCCCCCHHH--------------------------HHHHHHHHHHHHHHHCCCC-CCEEE--CC--CC
T ss_conf 768763887666777656689--------------------------9999999999999975886-65787--17--75
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHC-CCCCCEEEECHHHCC
Q ss_conf 455764311245544679999996332241643088627789878999966-898968897434358
Q gi|254780197|r 174 GTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSL-IENIDGLLVGGASLQ 239 (264)
Q Consensus 174 GtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~-~~~iDG~LVG~ASl~ 239 (264)
|=||.++++|--++.+.+.++... -..|||+|=|=+.- +..++. ..+.+.-|.|.+++.
T Consensus 180 GF~K~~t~~~Nl~ll~~l~~f~~~------lg~PlL~G~SRK~f-iG~~~gg~~~~~~R~~Gt~a~~ 239 (268)
T TIGR01496 180 GFGKSDTVEHNLELLKRLEEFKAV------LGYPLLVGVSRKSF-IGALLGGETPPEERLEGTLAAS 239 (268)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH------HCCCCEEECCCHHH-HHHHHCCCCCHHHHHHHHHHHH
T ss_conf 778888876789999868999998------57702120110468-8865167889756426889999
No 212
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=25.91 E-value=53 Score=14.50 Aligned_cols=158 Identities=21% Similarity=0.299 Sum_probs=81.7
Q ss_pred CCCCEEEEECCH--HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHH
Q ss_conf 577119996896--559999997325763102220122233343321206777540731001042000221357999999
Q gi|254780197|r 36 SCCIDVAICPPA--TLIYESSRLCKTSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQ 113 (264)
Q Consensus 36 ~~~veivi~Pp~--~~L~~~~~~~~~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~ 113 (264)
...+||-+--|. -.+..+.+.+. +..+||=.+-..+ .+..+.+.|++++.==|. +.+++
T Consensus 39 i~~IEITl~sp~a~e~I~~l~~~~p--~~lIGAGTVL~~~--------q~~~a~~aGa~fiVsP~~--------~~ev~- 99 (211)
T COG0800 39 IPAIEITLRTPAALEAIRALAKEFP--EALIGAGTVLNPE--------QARQAIAAGAQFIVSPGL--------NPEVA- 99 (211)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCC--CCEECCCCCCCHH--------HHHHHHHCCCCEEECCCC--------CHHHH-
T ss_conf 8769996479878999999998674--6588245566999--------999999859978989999--------99999-
Q ss_pred HHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999983347479981655203334980001110022210000001341132051353045576431124554467999
Q gi|254780197|r 114 SKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRR 193 (264)
Q Consensus 114 ~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~ 193 (264)
+.|...++-.+-=+--.-| +..=++.+... +=.=|.-+.|. ..+++.
T Consensus 100 ---~~a~~~~ip~~PG~~TptE----------i~~Ale~G~~~--------lK~FPa~~~Gg------------~~~~ka 146 (211)
T COG0800 100 ---KAANRYGIPYIPGVATPTE----------IMAALELGASA--------LKFFPAEVVGG------------PAMLKA 146 (211)
T ss_pred ---HHHHHCCCCCCCCCCCHHH----------HHHHHHCCHHH--------EEECCCCCCCC------------HHHHHH
T ss_conf ---9998679963688799899----------99999807224--------56437311376------------989998
Q ss_pred HHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH------HHHHHHHHHHH
Q ss_conf 999633224164308862778987899996689896889743435889------99999999999
Q gi|254780197|r 194 ILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE------LFLKIVEIVER 252 (264)
Q Consensus 194 ~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~------~F~~Ii~~~~~ 252 (264)
+..-+ .++++.==|.|+++|+.+++..+ +..+-+|+ +|-++ ++..|-+.+++
T Consensus 147 -~~gP~----~~v~~~pTGGVs~~N~~~yla~g-v~avG~Gs-~l~~~~~~~~~~~~~i~~~a~~ 204 (211)
T COG0800 147 -LAGPF----PQVRFCPTGGVSLDNAADYLAAG-VVAVGLGS-WLVPKDLIAAGDWDRITELARE 204 (211)
T ss_pred -HCCCC----CCCEEEECCCCCHHHHHHHHHCC-CEEEECCC-CCCCHHHHHCCCHHHHHHHHHH
T ss_conf -73899----99858546987877799997178-05995474-4267355531449999999999
No 213
>TIGR02408 ectoine_ThpD ectoine hydroxylase; InterPro: IPR012774 Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.; GO: 0016725 oxidoreductase activity acting on CH or CH2 groups.
Probab=25.87 E-value=53 Score=14.49 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=13.4
Q ss_pred EEEECCCCCHHHHCCCCCCCCCCCH
Q ss_conf 7998165520333498000111002
Q gi|254780197|r 126 PIVCIGETDEEYRSGRTFEVLQKQL 150 (264)
Q Consensus 126 pIlCiGE~~~e~~~~~~~~~l~~Ql 150 (264)
=+=|||||=. +.+++-|+.|-
T Consensus 172 F~~CvGETP~----Dnyk~SL~~Q~ 192 (278)
T TIGR02408 172 FLSCVGETPK----DNYKKSLKKQE 192 (278)
T ss_pred CCCCCCCCCC----CHHHHHHHCCC
T ss_conf 2668888986----11467775067
No 214
>PRK12412 pyridoxal kinase; Reviewed
Probab=25.62 E-value=24 Score=16.63 Aligned_cols=97 Identities=8% Similarity=-0.031 Sum_probs=50.9
Q ss_pred CCCCEEEEECCHHHHHHHHHHHCCCCCC-HHHHHCCCCC-CCCCCCCCCHHHHHHHCC---CCEEECCHHCCCCCC---C
Q ss_conf 5771199968965599999973257631-0222012223-334332120677754073---100104200022135---7
Q gi|254780197|r 36 SCCIDVAICPPATLIYESSRLCKTSSVI-IGAQDCHIAE-YGPYTGDISANMLADCGA---NFVILGHSERRIGHR---E 107 (264)
Q Consensus 36 ~~~veivi~Pp~~~L~~~~~~~~~s~I~-igAQnv~~~~-~GA~TGeiSa~mL~d~g~---~~viiGHSERR~~~~---E 107 (264)
.+.+++.+.++.-.+..+.+.++..+.. +-.-=+-... .+.+..+=....+++.=. +-+-=+..|.+.+.+ +
T Consensus 73 i~aIKiGml~s~~~i~~v~~~L~~~~~~~vV~DPVl~s~sG~~l~~~~~~~~l~~~Llp~a~viTPN~~Ea~~L~g~~i~ 152 (268)
T PRK12412 73 VDALKTGMLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKIN 152 (268)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCC
T ss_conf 88899904678778999999999679987786377556888655787899999987424474745987999974299989
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999999999998334747998165
Q gi|254780197|r 108 DSYVVQSKVKSACNAGLYPIVCIGE 132 (264)
Q Consensus 108 ~d~~I~~K~~~al~~~l~pIlCiGE 132 (264)
+.+.+..-.+...+.|-..++=-|-
T Consensus 153 ~~~~~~~aa~~l~~~G~~~VlikGG 177 (268)
T PRK12412 153 SLEDMKEAAKKIHALGAKYVLIKGG 177 (268)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999998667977997167
No 215
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B; InterPro: IPR014141 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important. This entry represents RexB proteins as found in Streptococcus and Lactococcus..
Probab=25.61 E-value=52 Score=14.53 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=45.7
Q ss_pred HHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHH------CCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9833474799816552033349800011100222100------0000134113205135304557643112455446799
Q gi|254780197|r 119 ACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP------SEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVR 192 (264)
Q Consensus 119 al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~------~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir 192 (264)
|.+.++.|.+|-- ..+.+...+-+.+-|+..-. .+++..+--+ -+|. ..-..|++|.|.+.||
T Consensus 247 A~ky~~~a~f~~s----~~~~~~~f~~~S~~lEa~hDFS~~~~~l~~~d~~~l---~iW~----c~~QKeEvE~VAr~IR 315 (1116)
T TIGR02774 247 AQKYQTKAEFISS----KHESKDSFDKLSKLLEAKHDFSELALDLDDKDKDAL---TIWE----CLTQKEEVEHVARSIR 315 (1116)
T ss_pred HHHCCCCCEECCC----CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC---CCCC----CCCCHHHHHHHHHHHH
T ss_conf 7652887102143----331432489998751453363201034025664134---5100----1251378899999998
Q ss_pred HHHHHH--CCHHHCCCEEEEC
Q ss_conf 999963--3224164308862
Q gi|254780197|r 193 RILLDR--FPEEGQKMRILYG 211 (264)
Q Consensus 193 ~~l~~~--~~~~~~~i~ilYG 211 (264)
+-|.+. +.++ +++||=|
T Consensus 316 qkL~~gsd~rYK--dilvLLG 334 (1116)
T TIGR02774 316 QKLYEGSDYRYK--DILVLLG 334 (1116)
T ss_pred HHHHCCCCCCHH--HEEEECC
T ss_conf 876248963011--0012128
No 216
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; InterPro: IPR010025 This family of proteins is a member of the IIIB subfamily (IPR001001 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of subfamily III and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family. AphA is a periplasmic acid phosphatase of Escherichia coli belonging to class B bacterial phosphatases , which is part of the DDDD superfamily of phosphohydrolases. The crystal structure of AphA has been determined at 2.2A and its resolution extended to 1.7A. Despite the lack of sequence homology, the AphA structure reveals a haloacid dehalogenase-like fold. This finding suggests that this fold could be conserved among members of the DDDD superfamily of phosphohydrolases. The active enzyme is a homotetramer built by using an extended N-terminal arm intertwining the four monomers. The active site of the native enzyme hosts a magnesium ion, which can be replaced by other metal ions. The structure explains the non-specific behaviour of AphA towards substrates, while a structure-based alignment with other phosphatases provides clues about the catalytic mechanism . ; GO: 0003993 acid phosphatase activity, 0030288 outer membrane-bounded periplasmic space.
Probab=25.54 E-value=47 Score=14.79 Aligned_cols=90 Identities=24% Similarity=0.315 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCH-HHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9999999998334747998165520-333498000111002221000000134113205135304557643112455446
Q gi|254780197|r 111 VVQSKVKSACNAGLYPIVCIGETDE-EYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHS 189 (264)
Q Consensus 111 ~I~~K~~~al~~~l~pIlCiGE~~~-e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~ 189 (264)
+-.+-+..=.+.|=.+.+.-|-|.- -+..|++..+ .+-| ++..+.++ ---.||-=-|. +.-+|-.-.+...
T Consensus 120 ~A~qLI~MH~~RGD~i~F~TGRt~gsmykkGk~d~v-~k~L----ak~F~i~~--tnm~pv~f~Gd-k~~~P~~y~Kt~~ 191 (248)
T TIGR01672 120 VAKQLIDMHQKRGDKIFFVTGRTAGSMYKKGKVDKV-AKIL----AKDFKIDK--TNMNPVEFAGD-KERKPYKYDKTQY 191 (248)
T ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCC-CHHH----HHHCCCCC--CCCCCEEEECC-CCCCCCCCCCCHH
T ss_conf 999999988760987999846876443325621433-3003----53068766--78863353178-8888854343089
Q ss_pred HHHHHHHHHCCHHHCCCEEEECCCCCHHHH
Q ss_conf 799999963322416430886277898789
Q gi|254780197|r 190 FVRRILLDRFPEEGQKMRILYGGSVDVANA 219 (264)
Q Consensus 190 ~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~ 219 (264)
. ++ .+++|-||=|=+-=+|
T Consensus 192 i-~~----------~~~~IhYGDSD~Di~A 210 (248)
T TIGR01672 192 I-KD----------KKVRIHYGDSDDDILA 210 (248)
T ss_pred H-HH----------CCCEEEECCCHHHHHH
T ss_conf 8-75----------8864887588568899
No 217
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=25.43 E-value=54 Score=14.44 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=15.5
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHH
Q ss_conf 889743435889999999999999
Q gi|254780197|r 230 GLLVGGASLQHELFLKIVEIVERV 253 (264)
Q Consensus 230 G~LVG~ASl~~~~F~~Ii~~~~~~ 253 (264)
||++ +.+|+++-++.+.++..
T Consensus 261 gfv~---~v~pe~veev~~v~~~~ 281 (324)
T COG2144 261 GFVL---TVDPEDVEEVVDVFEEE 281 (324)
T ss_pred CEEE---EECHHHHHHHHHHHHHC
T ss_conf 4799---96889999999999875
No 218
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=25.34 E-value=54 Score=14.43 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=33.1
Q ss_pred CCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHC-CHHHHHH
Q ss_conf 4308862778-987899996689896889743435-8899999
Q gi|254780197|r 205 KMRILYGGSV-DVANAEDFSLIENIDGLLVGGASL-QHELFLK 245 (264)
Q Consensus 205 ~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl-~~~~F~~ 245 (264)
++||+.-|.+ +++.++++++....|.+-+||+.+ ||+ |.+
T Consensus 286 ~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd-~~~ 327 (336)
T pfam00724 286 KGPVITVGRINDPEFAAEIVEEGRADLVAMGRPFLADPD-LVK 327 (336)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCHH-HHH
T ss_conf 985999699998999999998799443686699997913-999
No 219
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=25.31 E-value=28 Score=16.19 Aligned_cols=96 Identities=29% Similarity=0.522 Sum_probs=52.1
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEECHHHH--HCC------CCCCC---CHHHHHHHHHHHHHHHHHCCHHHCCCEEEE
Q ss_conf 0001110022210000001341132051353--045------57643---112455446799999963322416430886
Q gi|254780197|r 142 TFEVLQKQLDCSLPSEFKSSVPVIAYEPIWA--IGT------GRVPA---VVDLEKIHSFVRRILLDRFPEEGQKMRILY 210 (264)
Q Consensus 142 ~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWA--IGt------G~~a~---~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilY 210 (264)
+.+-|++||..+ + .|+++=-.|- ||+ |++|. -++++.+.+..+.+-..+|++.+..
T Consensus 203 Hi~EL~~QL~~c-k-------Sv~~WIqaWNsy~grFF~~nFGkPA~CFGr~Hvd~~lsT~~rIq~~lF~~~~g~----- 269 (346)
T cd01709 203 HIDELRKQLDAC-K-------SVLSWIQAWNSYIGRFFSNNFGKPANCFGREHVDAILATHERIQRRLFPDAGGG----- 269 (346)
T ss_pred HHHHHHHHHHHC-C-------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----
T ss_conf 999999998607-4-------099999999999999998717983101478789999999999999857788998-----
Q ss_pred CCCCCHH---HHHHHHCCCCC-CEEE-----ECHHHCCHHHHHHHHHHHH
Q ss_conf 2778987---89999668989-6889-----7434358899999999999
Q gi|254780197|r 211 GGSVDVA---NAEDFSLIENI-DGLL-----VGGASLQHELFLKIVEIVE 251 (264)
Q Consensus 211 GGSV~~~---N~~~l~~~~~i-DG~L-----VG~ASl~~~~F~~Ii~~~~ 251 (264)
|+||..- -+.+=....+| ||+| .||-.|.- -|+.+...-+
T Consensus 270 ~~sv~~~Lr~~i~~RFgv~~iPDgf~yfP~elGGL~L~N-PFi~ll~~r~ 318 (346)
T cd01709 270 GGSVTEYLRQMIESRFGVSDIPDGFFYFPEELGGLGLKN-PFISLLLVRD 318 (346)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEECHHHCCCCCCCC-CCHHHHHHHH
T ss_conf 640899999999985698879830056816308854478-5212899863
No 220
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=25.01 E-value=21 Score=17.05 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=9.5
Q ss_pred HHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999999983347479981655
Q gi|254780197|r 112 VQSKVKSACNAGLYPIVCIGET 133 (264)
Q Consensus 112 I~~K~~~al~~~l~pIlCiGE~ 133 (264)
|.+.+.+.-.+++++.+ .|||
T Consensus 154 ic~tIekvA~sd~Tvll-LGES 174 (451)
T TIGR02915 154 ICRTIEKVAPSDITVLL-LGES 174 (451)
T ss_pred HHHHHHHHCCCCCEEEE-ECCC
T ss_conf 98886521200001301-0466
No 221
>KOG1051 consensus
Probab=24.96 E-value=38 Score=15.38 Aligned_cols=130 Identities=23% Similarity=0.224 Sum_probs=57.0
Q ss_pred EECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHC
Q ss_conf 10420002213579999999999998334747998165520333498000111002221000000134113205135304
Q gi|254780197|r 95 ILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIG 174 (264)
Q Consensus 95 iiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIG 174 (264)
++--+.+| +|-++-++.-.+.+...+-.+|+|+||-.---..+.+. .....+...+ ...|+.-+|-||
T Consensus 254 l~aGa~~r---ge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~--------~~~d~~nlLk-p~L~rg~l~~IG 321 (898)
T KOG1051 254 LVAGAKRR---GEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNY--------GAIDAANLLK-PLLARGGLWCIG 321 (898)
T ss_pred CCCCCCCC---HHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCC--------HHHHHHHHHH-HHHHCCCEEEEE
T ss_conf 03586421---27889999999998547986899832143220488741--------1899998658-888559748972
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHHHHCCHHH-C-CCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 5576431-1245544679999996332241-6-43088627789878999966898968897434358
Q gi|254780197|r 175 TGRVPAV-VDLEKIHSFVRRILLDRFPEEG-Q-KMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 175 tG~~a~~-~~i~~~~~~Ir~~l~~~~~~~~-~-~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
+--.-+- .+++.--++=|.|-....+..+ . .+.||=|=+-+ ..-.....-.|..++.-+.+.
T Consensus 322 atT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~---~e~~hg~~~s~~a~~~a~~~s 386 (898)
T KOG1051 322 ATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSER---YEVHHGVRISDESLFSAAQLS 386 (898)
T ss_pred CCCHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCHH
T ss_conf 25099999987638205418551671357655314565554342---011347712543342202101
No 222
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=24.80 E-value=55 Score=14.37 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=41.7
Q ss_pred CCCCCC---CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCE-EEECC
Q ss_conf 433212---067775407310010420002213579999999999998334747-99816
Q gi|254780197|r 76 PYTGDI---SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP-IVCIG 131 (264)
Q Consensus 76 A~TGei---Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~p-IlCiG 131 (264)
.+-|.| ....++..|+++++|==+|-..+ .|.....-++.|.++||.+ .++..
T Consensus 8 ~~Qg~i~~~dw~~v~~~Gi~faiiKateG~~~---~D~~f~~n~~~a~~aGi~~G~YHy~ 64 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLTEGTTY---RNPYAASQIANAKAAGLKVSAYHYA 64 (192)
T ss_pred CCCCCCCHHHHHHHHHCCCCEEEEEEECCCCE---ECHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 98999877689999977996999999649870---9888999999999859846899983
No 223
>pfam05963 Cytomega_US3 Cytomegalovirus US3 protein. US3 of human cytomegalovirus is an endoplasmic reticulum resident transmembrane glycoprotein that binds to major histocompatibility complex class I molecules and prevents their departure. The endoplasmic reticulum retention signal of the US3 protein is contained in the luminal domain of the protein.
Probab=24.75 E-value=23 Score=16.70 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=39.8
Q ss_pred ECCHHHHHHHHHHHCCC-CCCHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCCEEECCHHCCC
Q ss_conf 68965599999973257-6310222012223334--332120677754073100104200022
Q gi|254780197|r 44 CPPATLIYESSRLCKTS-SVIIGAQDCHIAEYGP--YTGDISANMLADCGANFVILGHSERRI 103 (264)
Q Consensus 44 ~Pp~~~L~~~~~~~~~s-~I~igAQnv~~~~~GA--~TGeiSa~mL~d~g~~~viiGHSERR~ 103 (264)
.||-|+..-.++..... .+. --||-++-+.|- |+|.||..+-+-.=++|.++|.|-+-.
T Consensus 20 ~~prp~~~i~s~~t~~~~~f~-Veen~C~~~~Gklf~rG~isGN~t~~~Fv~~giv~~sy~en 81 (187)
T pfam05963 20 GPPRPHTEITSKSTATRPHFT-VEENRCHIHMGQMYFRGSVSGNFTTFHFVDYGIVSQSYMDN 81 (187)
T ss_pred CCCCCHHHHHHHHCCCCCCEE-EECCEEEEECCEEEEEEEEECCEEEEEEEEEEEEECCCCCC
T ss_conf 899924777664027887089-86116899867799976882541058989998784043222
No 224
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=24.64 E-value=56 Score=14.35 Aligned_cols=123 Identities=19% Similarity=0.143 Sum_probs=69.8
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 06777540731001042000221357999999999999833474799816552033349800011100222100000013
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSS 161 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~ 161 (264)
.++...+++++++=+|.+.- .+. .+...+..++..=+.+. +.++ +.... ...
T Consensus 72 ~~~lA~~~~adGvHLgq~d~---------~~~-~~r~~l~~~~iiG~S~h-~~~e-------------~~~A~----~~g 123 (210)
T PRK00043 72 RVDLALAVGADGVHLGQDDL---------PVA-DARAILGPDAIIGVSTH-TLEE-------------AAAAA----AAG 123 (210)
T ss_pred HHHHHHHHCCCEEECCCCCC---------CHH-HHHHHCCCCCEEEEECC-CHHH-------------HHHHH----HHC
T ss_conf 89999871999897698876---------899-99975198878998479-9999-------------99998----828
Q ss_pred CCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 41132051353045576431124554467999999633224164308862778987899996689896889743435889
Q gi|254780197|r 162 VPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 162 ~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
.-.++.-|+|.-.|...+.|.. -...++.+... -++||+==|.+|++|+.++.+. ++||+-|-++=+.++
T Consensus 124 aDYi~~Gpvf~T~tK~~~~~~~---g~~~l~~~~~~------~~iPvvAIGGI~~~ni~~~~~~-Ga~giAvis~I~~a~ 193 (210)
T PRK00043 124 ADYVGVGPIFPTPTKKDAKPAV---GLELLREAREA------IDIPIVAIGGITPENAAEVLEA-GADGVAVVSAITAAE 193 (210)
T ss_pred CCEEEECCCCCCCCCCCCCCCC---CHHHHHHHHHH------CCCCEEEECCCCHHHHHHHHHC-CCCEEEEEHHHHCCC
T ss_conf 9838874521479888887778---99999999984------7999899808899999999980-999999708977699
Q ss_pred H
Q ss_conf 9
Q gi|254780197|r 242 L 242 (264)
Q Consensus 242 ~ 242 (264)
+
T Consensus 194 d 194 (210)
T PRK00043 194 D 194 (210)
T ss_pred C
T ss_conf 9
No 225
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.61 E-value=56 Score=14.35 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCC-HHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHH
Q ss_conf 9999999999833474799816552-03334980001110022210000001341132051353
Q gi|254780197|r 110 YVVQSKVKSACNAGLYPIVCIGETD-EEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWA 172 (264)
Q Consensus 110 ~~I~~K~~~al~~~l~pIlCiGE~~-~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWA 172 (264)
+.+.+-+..|.+.|+..|.=.|-.. .+.....+.+...+.|..+++- .....+.|+.||.|.
T Consensus 94 e~l~kaI~lA~~LGi~~I~l~g~dv~~~~~~~~~~~rf~e~l~~~~~~-Ae~~gV~L~iE~~~~ 156 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKDEETRQRFIEGLAWAVEQ-AAAAQVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHCCEEEEEECCC
T ss_conf 999999999998099789968876666869889999999999999999-998399899995676
No 226
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=24.44 E-value=31 Score=15.98 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCCCEEEEECCHHHHHHHHHHHCCCCCCHH-HHHC----CCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCC
Q ss_conf 577119996896559999997325763102-2201----2223334332120677754073100104200022
Q gi|254780197|r 36 SCCIDVAICPPATLIYESSRLCKTSSVIIG-AQDC----HIAEYGPYTGDISANMLADCGANFVILGHSERRI 103 (264)
Q Consensus 36 ~~~veivi~Pp~~~L~~~~~~~~~s~I~ig-AQnv----~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~ 103 (264)
...+++-+-|+--....++.+.++ .+.++ .|+- -+...|.|.|+.-..-|+-++.=|-...|-=-|.
T Consensus 54 ~~~i~~~v~~tggSv~Nl~~i~~G-e~d~alvq~d~a~~ay~G~g~f~~~~~~~~lr~v~~lype~~~vv~r~ 125 (321)
T COG2358 54 EKGIECSVVPTGGSVENLKLLASG-EADLALVQSDVAYEAYNGTGSFEGKGKDENLRAVAALYPEPFHVVTRK 125 (321)
T ss_pred CCCEEEEEEECCCHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCEEEEEEEC
T ss_conf 778189996065429999867537-625356667899998718531145665514332213054208999966
No 227
>TIGR01823 PabB-fungal para-aminobenzoate synthase; InterPro: IPR010117 This entry represents the fungal clade of para-aminobenzoate synthase, which acts on chorismate to form para-aminobenzoic acid (PABA), a precursor of folate..
Probab=24.14 E-value=43 Score=15.06 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=56.6
Q ss_pred CCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEE-EECCCCCHHHHCCCCCCCC---CCCHHHHHHCCCCCCCC---
Q ss_conf 3100104200022135799999999999983347479-9816552033349800011---10022210000001341---
Q gi|254780197|r 91 ANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPI-VCIGETDEEYRSGRTFEVL---QKQLDCSLPSEFKSSVP--- 163 (264)
Q Consensus 91 ~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pI-lCiGE~~~e~~~~~~~~~l---~~Ql~~~l~~~~~~~~~--- 163 (264)
+=.+.-|-|-|=.|++|+.....+++..-...+++++ +|+-++..+++---..+++ .+|+=..|..+.+.+++
T Consensus 333 Ii~~p~s~S~~l~~Y~etq~~l~~~~hy~~~tei~~~r~~k~~s~v~~~LPGslevihe~~sqfW~tl~~f~~~kk~d~~ 412 (851)
T TIGR01823 333 IIAVPSSASQVLEYYGETQALLKEKVHYRKDTEISETRLKKAESIVERDLPGSLEVIHEIKSQFWSTLAKFMEQKKVDKG 412 (851)
T ss_pred EEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCEECCC
T ss_conf 98752777314554022035666664121057653200001231101257853234431111378999987513111178
Q ss_pred ------------EEEECH
Q ss_conf ------------132051
Q gi|254780197|r 164 ------------VIAYEP 169 (264)
Q Consensus 164 ------------iIAYEP 169 (264)
||.||=
T Consensus 413 ~~~~PF~GG~~Gi~gYE~ 430 (851)
T TIGR01823 413 DLEVPFYGGLLGILGYEI 430 (851)
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 851560002677878887
No 228
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=23.79 E-value=58 Score=14.25 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=31.3
Q ss_pred EEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 886277898789999668989688974343588999999999999
Q gi|254780197|r 208 ILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVEIVER 252 (264)
Q Consensus 208 ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~~~ 252 (264)
|+||-++...=.+..-.....|-+||=|.||...-+..++..+.+
T Consensus 145 V~FGE~~p~~~~~a~~~~~~aDlllvvGTSl~V~pa~~l~~~a~~ 189 (224)
T cd01412 145 VWFGESLPLALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKE 189 (224)
T ss_pred EECCCCCCHHHHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHHH
T ss_conf 776888858999999999719979998988555677789999997
No 229
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=23.70 E-value=58 Score=14.24 Aligned_cols=41 Identities=34% Similarity=0.346 Sum_probs=30.7
Q ss_pred EEECCCCCHHHHHHHHCCCCCCEEEECHH---HCCHHHHHH-HHHH
Q ss_conf 88627789878999966898968897434---358899999-9999
Q gi|254780197|r 208 ILYGGSVDVANAEDFSLIENIDGLLVGGA---SLQHELFLK-IVEI 249 (264)
Q Consensus 208 ilYGGSV~~~N~~~l~~~~~iDG~LVG~A---Sl~~~~F~~-Ii~~ 249 (264)
+--||-.+|..+.-++ +-..||++||+- |-||++++. |+++
T Consensus 212 FAAGGvATPADAALMM-~LGadGVFVGSGIFKS~~P~~~A~AIV~A 256 (296)
T COG0214 212 FAAGGVATPADAALMM-QLGADGVFVGSGIFKSSNPEKRAKAIVEA 256 (296)
T ss_pred ECCCCCCCHHHHHHHH-HHCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 2256768816799999-81898478656433789989999999999
No 230
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=23.46 E-value=58 Score=14.23 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=11.2
Q ss_pred HHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3045576431124554467999
Q gi|254780197|r 172 AIGTGRVPAVVDLEKIHSFVRR 193 (264)
Q Consensus 172 AIGtG~~a~~~~i~~~~~~Ir~ 193 (264)
|+|||..+.+++..++++.+.+
T Consensus 231 AvGTGlna~~~f~~~v~~~L~~ 252 (462)
T PRK00485 231 AVGTGLNAHPGFAEKVAAELAE 252 (462)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 3237888881058999999999
No 231
>PRK13133 consensus
Probab=23.06 E-value=60 Score=14.16 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=61.8
Q ss_pred CHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCH-HHHCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 067775407310010420002213579999999999998334747998165520-3334980001110022210000001
Q gi|254780197|r 82 SANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDE-EYRSGRTFEVLQKQLDCSLPSEFKS 160 (264)
Q Consensus 82 Sa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~-e~~~~~~~~~l~~Ql~~~l~~~~~~ 160 (264)
-...+++.|++.+||=--= +-|..+. ...+.++|+.+|.-|.-+-. +| +..+... .
T Consensus 116 F~~~~~~aGvdGlIipDLP----~eE~~~~----~~~~~~~gl~~I~lvaPtt~~eR------------i~~i~~~---s 172 (267)
T PRK13133 116 FLADAVKAGVDGLLIPDLP----PEEAIDF----LERAKNFGLTVVFLISPVTPPER------------IEFIDSL---S 172 (267)
T ss_pred HHHHHHHCCCCEEECCCCC----HHHHHHH----HHHHHHCCCCEEEEECCCCCHHH------------HHHHHHC---C
T ss_conf 9999998698788778999----6888999----99998469860244289999999------------9999842---7
Q ss_pred CC-C-EEEECHHHHHCCCC--CCC---CHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEE
Q ss_conf 34-1-13205135304557--643---1124554467999999633224164308862778-987899996689896889
Q gi|254780197|r 161 SV-P-VIAYEPIWAIGTGR--VPA---VVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLL 232 (264)
Q Consensus 161 ~~-~-iIAYEPvWAIGtG~--~a~---~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~L 232 (264)
+- + .+++-.+ ||. ... ...+.+..+.||++ -+.||.-|=.+ +++-++++... .||+-
T Consensus 173 ~GFiY~vs~~Gv----TG~~~~~~~~~~~~~~~~i~~ik~~---------t~~Pv~vGFGI~~~e~~~~i~~~--ADGvI 237 (267)
T PRK13133 173 TDFSYCLAVNAT----TGTAKLSDAGTEAAVDEYLKRVRQH---------TKKKFVVGFGIKDRERVEHMWEL--ADGAV 237 (267)
T ss_pred CCCEEEEEEECC----CCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCEEEECCCCCHHHHHHHHHH--CCEEE
T ss_conf 895799980013----4677555542678999999999971---------89987996687999999999822--99999
Q ss_pred ECHHHC
Q ss_conf 743435
Q gi|254780197|r 233 VGGASL 238 (264)
Q Consensus 233 VG~ASl 238 (264)
||+|=.
T Consensus 238 VGSaiV 243 (267)
T PRK13133 238 VGTALL 243 (267)
T ss_pred ECHHHH
T ss_conf 878999
No 232
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=23.02 E-value=50 Score=14.65 Aligned_cols=67 Identities=25% Similarity=0.440 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHH
Q ss_conf 4332120677754073100104200022135799999999999983347479981655203334980001110022
Q gi|254780197|r 76 PYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLD 151 (264)
Q Consensus 76 A~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~ 151 (264)
-|-|||-- .|+=...--.++--+|--. -.|--+ +++|++.||+||++|- +-+|...+...|+..-++
T Consensus 80 DFGGEVER-vl~MVDgvlLlVDA~EGpM--PQTrFV----lkKAl~~gL~PIVVvN--KiDrp~Arp~~Vvd~vfD 146 (603)
T COG1217 80 DFGGEVER-VLSMVDGVLLLVDASEGPM--PQTRFV----LKKALALGLKPIVVIN--KIDRPDARPDEVVDEVFD 146 (603)
T ss_pred CCCCHHHH-HHHHCCEEEEEEECCCCCC--CCHHHH----HHHHHHCCCCCEEEEE--CCCCCCCCHHHHHHHHHH
T ss_conf 76625451-1432334899997555888--731444----8999974998489996--778999887899999999
No 233
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=22.87 E-value=60 Score=14.14 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCEEEECCCC-CHHHHHHHHCCCCCCEEEECHHHCCHHHHHH
Q ss_conf 554467999999633224164308862778-9878999966898968897434358899999
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSV-DVANAEDFSLIENIDGLLVGGASLQHELFLK 245 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV-~~~N~~~l~~~~~iDG~LVG~ASl~~~~F~~ 245 (264)
...+..||+.+ ++||+.-|.+ +|+.+++++.....|.+.+||+.|---+|.+
T Consensus 278 ~~~~~~ik~~~---------~~Pvi~vG~i~~p~~ae~~l~~G~aD~V~~gR~llaDPd~~~ 330 (370)
T cd02929 278 EPYIKFVKQVT---------SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPK 330 (370)
T ss_pred HHHHHHHHHHC---------CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHH
T ss_conf 59999999860---------880899789799999999998799426453479876953999
No 234
>pfam06200 tify tify domain. This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response.
Probab=22.71 E-value=32 Score=15.85 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=15.1
Q ss_pred HCCCEEEECCCCC------HHHHHHHHCC
Q ss_conf 1643088627789------8789999668
Q gi|254780197|r 203 GQKMRILYGGSVD------VANAEDFSLI 225 (264)
Q Consensus 203 ~~~i~ilYGGSV~------~~N~~~l~~~ 225 (264)
...+.|.|||+|. ++-+.+++.+
T Consensus 5 ~~qlTIfY~G~v~Vfd~v~~eKa~~im~l 33 (36)
T pfam06200 5 TAQLTIFYGGQVYVFDDVPPEKAQEIMLL 33 (36)
T ss_pred CCCEEEEECCEEEEECCCCHHHHHHHHHH
T ss_conf 77589998989999689998999999997
No 235
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=24 Score=16.64 Aligned_cols=14 Identities=57% Similarity=0.703 Sum_probs=10.5
Q ss_pred EEEEC-HHHHHCCCC
Q ss_conf 13205-135304557
Q gi|254780197|r 164 VIAYE-PIWAIGTGR 177 (264)
Q Consensus 164 iIAYE-PvWAIGtG~ 177 (264)
||+-| ++||||+|-
T Consensus 116 V~epe~~~~aIGSGg 130 (178)
T COG5405 116 VIEPEDDIIAIGSGG 130 (178)
T ss_pred EECCCCCEEEECCCC
T ss_conf 565788868872783
No 236
>TIGR01228 hutU urocanate hydratase; InterPro: IPR000193 Urocanase (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H_2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD^+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD^+.; GO: 0016153 urocanate hydratase activity, 0006548 histidine catabolic process.
Probab=22.20 E-value=62 Score=14.05 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=9.0
Q ss_pred CCCCHHHHHHHCCCCEEECCHHC
Q ss_conf 21206777540731001042000
Q gi|254780197|r 79 GDISANMLADCGANFVILGHSER 101 (264)
Q Consensus 79 GeiSa~mL~d~g~~~viiGHSER 101 (264)
|+.+|-.=.=+|...+|=|-=|.
T Consensus 121 GQMTAGSWiYIG~QGilQGTyET 143 (547)
T TIGR01228 121 GQMTAGSWIYIGTQGILQGTYET 143 (547)
T ss_pred EECCCCCEEEECCCCCEECHHHH
T ss_conf 01110213333156630052889
No 237
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=21.78 E-value=63 Score=14.00 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHH-
Q ss_conf 9999999999998334747998165520333498000111002221000000134113205135304557643112455-
Q gi|254780197|r 108 DSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEK- 186 (264)
Q Consensus 108 ~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~- 186 (264)
+.|+|.+.++...++|-+.=+-+- .++-+.-+.-++.. +++ .++|= |-+-|.|++.-
T Consensus 118 ~~eLl~~ri~~vr~aG~i~Av~ls---Pq~~~~~a~~vv~A-------G~D---LLvIq---------gT~vSaehv~~e 175 (376)
T TIGR01304 118 KPELLGKRIAEVRDAGVITAVRLS---PQNASKLAPVVVEA-------GAD---LLVIQ---------GTVVSAEHVSSE 175 (376)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHHHH-------CCC---EEEEH---------HHHHHHEEECCC
T ss_conf 864789999999726848999866---53167888999971-------730---04200---------123201004688
Q ss_pred HH--HHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEEC--H--HHCC
Q ss_conf 44--6799999963322416430886277898789999668989688974--3--4358
Q gi|254780197|r 187 IH--SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVG--G--ASLQ 239 (264)
Q Consensus 187 ~~--~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG--~--ASl~ 239 (264)
-+ --+|+++.++ ++||+-||-++-+-+-+||. ..--|+||| | |...
T Consensus 176 ~~E~LnLk~fi~eL------DvPVv~Ggv~~Y~~ALhLMR-tGAagvlVGfgG~ga~~T 227 (376)
T TIGR01304 176 SGEPLNLKKFIQEL------DVPVVAGGVVTYTTALHLMR-TGAAGVLVGFGGPGAATT 227 (376)
T ss_pred CCCCHHHHHHHHHC------CCCEEECCCCCHHHHHHHHH-HCCEEEEECCCCCCCCCC
T ss_conf 88721488897548------98878838530889999863-011378864578873424
No 238
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=21.77 E-value=63 Score=14.00 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 245544679999996332241643088627789878999966898968897434358
Q gi|254780197|r 183 DLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 183 ~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
+..+..+.+|..|-.. ..++++|+=-|..+++-+.+|... ||++=||+.=.+
T Consensus 242 d~~~l~~~vR~~LD~~---G~~~vkIv~Sgglde~~I~~l~~~--vD~fGVGt~l~~ 293 (343)
T PRK08662 242 NFRKIVEEVRWTLDLH---GYSHVKIFVSGGLDEEDIRELRDV--VDGFGVGTSISF 293 (343)
T ss_pred CHHHHHHHHHHHHHHC---CCCCCEEEEECCCCHHHHHHHHHH--CCEEEECCCCCC
T ss_conf 7799999999985455---799828999489999999999864--868960665578
No 239
>PRK13140 consensus
Probab=21.66 E-value=64 Score=13.98 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=34.0
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC-HHHHHHHHCCCCCCEEEECHHHCC
Q ss_conf 5576-4311245544679999996332241643088627789-878999966898968897434358
Q gi|254780197|r 175 TGRV-PAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVD-VANAEDFSLIENIDGLLVGGASLQ 239 (264)
Q Consensus 175 tG~~-a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~-~~N~~~l~~~~~iDG~LVG~ASl~ 239 (264)
||.- .-.+++...++.||+. ..++|++.|=.++ ++-++.+... .||+-||+|-.+
T Consensus 180 TG~~~~~~~~~~~~i~~ik~~--------~~~~Pv~vGFGIs~~e~v~~~~~~--aDGvIVGSaivk 236 (257)
T PRK13140 180 TGAQQDFNNQKRAYFKRIKDM--------NLKNPRMVGFGISNKATFNAACEY--ASGAIIGSAFVK 236 (257)
T ss_pred CCCCCCCCHHHHHHHHHHHHH--------CCCCCEEEEECCCCHHHHHHHHHC--CCEEEECHHHHH
T ss_conf 688766515689999999982--------789986998057989999999831--999998799999
No 240
>TIGR02837 spore_II_R stage II sporulation protein R; InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation , ..
Probab=21.63 E-value=33 Score=15.81 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=42.3
Q ss_pred HHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHH
Q ss_conf 775407310010420002213579999999999998334747998165520333498000111002221
Q gi|254780197|r 85 MLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCS 153 (264)
Q Consensus 85 mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~ 153 (264)
...+-=+.+=+|-||. ...|..++.+++=|.-..|+|.|= +. +...+.+++|++.|..+
T Consensus 38 ~~~~~lIR~hvlANSD-----S~~DQ~LKl~vRDaVl~~i~p~l~--g~---~s~~ea~~~i~~~l~eI 96 (172)
T TIGR02837 38 VISEKLIRFHVLANSD-----SDEDQELKLKVRDAVLKEITPKLK--GL---KSLEEARRVIKENLPEI 96 (172)
T ss_pred CCCCCCEEEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHHC--CC---CCHHHHHHHHHHCCCCH
T ss_conf 0357716777652489-----846777777767888876778751--78---78889999998518127
No 241
>pfam04414 tRNA_deacylase D-aminoacyl-tRNA deacylase. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules.
Probab=21.61 E-value=64 Score=13.98 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=45.8
Q ss_pred EEECCHHHHH-HHHHHHCCCCCCHHHHHCCCCC--CCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9968965599-9999732576310222012223--334332120677754073100104200022135799999999999
Q gi|254780197|r 42 AICPPATLIY-ESSRLCKTSSVIIGAQDCHIAE--YGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKS 118 (264)
Q Consensus 42 vi~Pp~~~L~-~~~~~~~~s~I~igAQnv~~~~--~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~K~~~ 118 (264)
-++||.|.+. ...+.++...-..+ =+++.+- -||.+=++ -+-|+.||-+|......+--+.+++-+..
T Consensus 50 ~~~~~~P~~~~~~l~~l~~~~~~~~-f~vt~EaTHHGPt~l~~--------Ps~FiEIGSte~~W~d~~a~~~~A~ai~~ 120 (214)
T pfam04414 50 ELAIANPRLMTALLRALAKIAPELG-FEVTFEATHHGPTTLDV--------PSVFVEIGSTEEEWNDPDAAEAVAEAVLE 120 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCC-CEEEEEEECCCCCCCCC--------CEEEEEECCCHHHHCCHHHHHHHHHHHHH
T ss_conf 5788997999999999998575689-45999841448876789--------60899957877983793899999999999
Q ss_pred HHHCCC----CEEEECCCC
Q ss_conf 983347----479981655
Q gi|254780197|r 119 ACNAGL----YPIVCIGET 133 (264)
Q Consensus 119 al~~~l----~pIlCiGE~ 133 (264)
++.... .+++|+|-.
T Consensus 121 ~~~~~~~~~~~~~ig~GGg 139 (214)
T pfam04414 121 ALGKDEEEEVKPAVGIGGG 139 (214)
T ss_pred HHCCCCCCCCCEEEEECCC
T ss_conf 8437756678889996897
No 242
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=21.32 E-value=65 Score=13.94 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=78.9
Q ss_pred CCCCCCHHHHHHHCCCCEE------ECCHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCC-CCCCCCCC
Q ss_conf 3321206777540731001------0420002213579999999999998334747998165520333498-00011100
Q gi|254780197|r 77 YTGDISANMLADCGANFVI------LGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGR-TFEVLQKQ 149 (264)
Q Consensus 77 ~TGeiSa~mL~d~g~~~vi------iGHSERR~~~~E~d~~I~~K~~~al~~~l~pIlCiGE~~~e~~~~~-~~~~l~~Q 149 (264)
.+-+||+.-|..+|++|-- +|-.=-|..++=+.+.+++ ...++|.+.+ ++-. +.+.+.
T Consensus 62 vi~DIsp~~l~~lg~s~~dl~~~~~lGi~glRlD~Gf~~~eia~----ls~n~l~I~L---------NASti~~~~l~-- 126 (357)
T pfam05913 62 VIADISPSVLKQLGISYDDLSFLKELGVTGLRLDYGFTGEEIAE----LSKNPLKIEL---------NASTITTEYLD-- 126 (357)
T ss_pred EEEECCHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHH----HHCCCCEEEE---------ECCCCCHHHHH--
T ss_conf 99987989998819997889999977998999779999899999----7279967999---------78649999999--
Q ss_pred HHHHHHCCCCCCCCEEE---ECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH--C--CHHHCCCEEEECCCCCHH-----
Q ss_conf 22210000001341132---05135304557643112455446799999963--3--224164308862778987-----
Q gi|254780197|r 150 LDCSLPSEFKSSVPVIA---YEPIWAIGTGRVPAVVDLEKIHSFVRRILLDR--F--PEEGQKMRILYGGSVDVA----- 217 (264)
Q Consensus 150 l~~~l~~~~~~~~~iIA---YEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~--~--~~~~~~i~ilYGGSV~~~----- 217 (264)
..+....+.++ ++| |=|- -.||. +.+...+.-+.+|+.=-+. | +..+..=| ||=|=.+.+
T Consensus 127 --~l~~~~~n~~~-l~a~HNfYPr--~~TGL--s~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGP-l~eGLPTLE~HR~~ 198 (357)
T pfam05913 127 --NLLSYGANFEN-LEACHNFYPR--PYTGL--SYEFFLEKNRWFKKYGIKTAAFIPGDGGLRGP-LYEGLPTLEKHRYL 198 (357)
T ss_pred --HHHHCCCCHHH-EEEEECCCCC--CCCCC--CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCHHHCCC
T ss_conf --99980998789-7997444799--88788--99999999999997799689997279866688-36887741987699
Q ss_pred ----HHHHHHCCCCCCEEEECHHHCCHHHHHHHHHHHH
Q ss_conf ----8999966898968897434358899999999999
Q gi|254780197|r 218 ----NAEDFSLIENIDGLLVGGASLQHELFLKIVEIVE 251 (264)
Q Consensus 218 ----N~~~l~~~~~iDG~LVG~ASl~~~~F~~Ii~~~~ 251 (264)
-+.+|.....||.++||.+-.+.+++.++.+...
T Consensus 199 ~~~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~~~ 236 (357)
T pfam05913 199 PPLAAAKHLLATGLIDDVLIGDAYASEEELKQLSEYFN 236 (357)
T ss_pred CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999997289897998699999999999999875
No 243
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=21.28 E-value=37 Score=15.51 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=7.7
Q ss_pred HHHCCCCEEE--CCHH
Q ss_conf 5407310010--4200
Q gi|254780197|r 87 ADCGANFVIL--GHSE 100 (264)
Q Consensus 87 ~d~g~~~vii--GHSE 100 (264)
+++|++.|+| ||.+
T Consensus 159 ~~~G~~~VlvKGGH~~ 174 (443)
T PRK08573 159 EETGAEAVVVKGGHLE 174 (443)
T ss_pred HHCCCCEEEECCCCCC
T ss_conf 9809988999278688
No 244
>PRK07695 transcriptional regulator TenI; Provisional
Probab=21.21 E-value=65 Score=13.93 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=48.2
Q ss_pred CEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHH
Q ss_conf 1132051353045576431124554467999999633224164308862778987899996689896889743435889
Q gi|254780197|r 163 PVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 (264)
Q Consensus 163 ~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~ 241 (264)
-.++.=|+|.--|-....|- -...++++... -++|++==|.++++|+.++++. ++||+-|-++=+.++
T Consensus 117 DYi~~Gpif~T~tK~~~~~~----G~~~l~~~~~~------~~iPvvAIGGI~~~ni~~v~~~-Ga~giAvis~I~~a~ 184 (202)
T PRK07695 117 DYVVYGHVFPTDCKKGVPAR----GLEELSEIARA------LSIPVIAIGGITPENTRDVLAA-GVSGIAVMSGIFSSS 184 (202)
T ss_pred CEEEECCCCCCCCCCCCCCC----CHHHHHHHHHH------CCCCEEEECCCCHHHHHHHHHC-CCCEEEEHHHHHCCC
T ss_conf 96997254126888898878----99999999986------7999899869899999999982-999999718977699
No 245
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=21.20 E-value=35 Score=15.58 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999998334747998
Q gi|254780197|r 114 SKVKSACNAGLYPIVC 129 (264)
Q Consensus 114 ~K~~~al~~~l~pIlC 129 (264)
+++-.+.++.+.+..|
T Consensus 173 QpFY~sr~~~ieatrC 188 (874)
T TIGR00868 173 QPFYLSRKKKIEATRC 188 (874)
T ss_pred CCCHHCCCCCCCCEEC
T ss_conf 8500100672040450
No 246
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=20.94 E-value=66 Score=13.89 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH----H--HCCCEEEECCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 134113205135304557643112455446799999963322----4--1643088627789878999966898968897
Q gi|254780197|r 160 SSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRILLDRFPE----E--GQKMRILYGGSVDVANAEDFSLIENIDGLLV 233 (264)
Q Consensus 160 ~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~----~--~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LV 233 (264)
...+.|-|+|. .....++...+++........ . --.+||.||+++.++ .+.++..
T Consensus 49 y~sllV~fdp~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~r~~~IPV~Yd~~~gpD-L~~va~~-------- 109 (201)
T smart00796 49 YRSLLVHFDPL----------VIDPAALLARLRALEALPLAEALEVPGRIIEIPVCYGGEFGPD-LEFVARH-------- 109 (201)
T ss_pred HHHHHHHHCCC----------CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCC-HHHHHHH--------
T ss_conf 56052400667----------7799999999999984545443578983899985879987779-9999988--------
Q ss_pred CHHHCCHHHHHHH
Q ss_conf 4343588999999
Q gi|254780197|r 234 GGASLQHELFLKI 246 (264)
Q Consensus 234 G~ASl~~~~F~~I 246 (264)
..|+.++|++.
T Consensus 110 --~gls~~evI~~ 120 (201)
T smart00796 110 --NGLSVDEVIRL 120 (201)
T ss_pred --HCCCHHHHHHH
T ss_conf --49599999999
No 247
>KOG1482 consensus
Probab=20.88 E-value=55 Score=14.39 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=27.0
Q ss_pred EEEEC-HHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 13205-13530455764--------3112455446799999963322
Q gi|254780197|r 164 VIAYE-PIWAIGTGRVP--------AVVDLEKIHSFVRRILLDRFPE 201 (264)
Q Consensus 164 iIAYE-PvWAIGtG~~a--------~~~~i~~~~~~Ir~~l~~~~~~ 201 (264)
.--+| -+|||.-||++ ...+.+++...+++.+++.|+-
T Consensus 310 ~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~~vL~~~~~~i~~~~~~ 356 (379)
T KOG1482 310 KAVHDLHIWSITVGKVALSVHLAIDSEADAEEVLDEARSLIKRRYGI 356 (379)
T ss_pred EEEEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCE
T ss_conf 68888888877427557899996168889899999999999742565
No 248
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=20.69 E-value=67 Score=13.86 Aligned_cols=150 Identities=22% Similarity=0.289 Sum_probs=77.3
Q ss_pred CCCCEEEEECCHHHHHHHHHHHC-CCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCHHCCCCCCCCHHHHHH
Q ss_conf 57711999689655999999732-57631022201222333433212067775407310010420002213579999999
Q gi|254780197|r 36 SCCIDVAICPPATLIYESSRLCK-TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQS 114 (264)
Q Consensus 36 ~~~veivi~Pp~~~L~~~~~~~~-~s~I~igAQnv~~~~~GA~TGeiSa~mL~d~g~~~viiGHSERR~~~~E~d~~I~~ 114 (264)
-..+||-+--|. .+..+..+.+ ..++.+||=.+-..+ .+....+.|++|.+-=| -+.+++.
T Consensus 34 i~~iEiTl~t~~-a~~~I~~l~~~~p~~~iGaGTV~~~e--------~~~~a~~aGA~FivSP~--------~~~~v~~- 95 (196)
T pfam01081 34 IRVLEVTLRTPC-ALDAIRLLRKNRPDALVGAGTVLNAQ--------QLAEAAEAGAQFVVSPG--------LTADLLK- 95 (196)
T ss_pred CCEEEEECCCHH-HHHHHHHHHHHCCCCEEEEEECCCHH--------HHHHHHHCCCCEEECCC--------CHHHHHH-
T ss_conf 988999479827-99999999964999679998376899--------99999974999999787--------6399999-
Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999833474799816552033349800011100222100000013411320513530455764311245544679999
Q gi|254780197|r 115 KVKSACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRI 194 (264)
Q Consensus 115 K~~~al~~~l~pIlCiGE~~~e~~~~~~~~~l~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~ 194 (264)
.|.++++-.|-=+--.-|-..+ .+.+ .+ ++=.=|.-+.|. ..+||..
T Consensus 96 ---~a~~~~i~~iPGv~TpsEi~~A----------~~~G------~~--~vKlFPA~~~Gg------------~~~lkal 142 (196)
T pfam01081 96 ---HAVDVKIPLIPGVSTPSEIMLG----------LDLG------LT--RFKFFPAEASGG------------VPAIKAL 142 (196)
T ss_pred ---HHHHCCCCEECCCCCHHHHHHH----------HHCC------CC--EEEECCCHHCCC------------HHHHHHH
T ss_conf ---9997399663785999999999----------9879------99--899787310184------------9999998
Q ss_pred HHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHHHCCHHHH
Q ss_conf 9963322416430886277898789999668989688974343588999
Q gi|254780197|r 195 LLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243 (264)
Q Consensus 195 l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~~~F 243 (264)
. .-| .+++++==|.|+++|+.++++...+ +.+||.+|-+++.
T Consensus 143 ~-~p~----p~~~f~ptGGv~~~N~~~yl~~g~v--~~~~GS~l~~~~l 184 (196)
T pfam01081 143 A-GPF----PQVRFCPTGGIHPANVRDYLALPNI--LCVGGSWLVPASL 184 (196)
T ss_pred H-CCC----CCCEEEEECCCCHHHHHHHHHCCCE--EEEECHHHCCHHH
T ss_conf 5-779----9986998079898889999968986--9998936489889
No 249
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=20.60 E-value=67 Score=13.85 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHHHHCCCCCCEEEECHH--HCC---------HHHHHHHHHHHH
Q ss_conf 5544679999996332241643088627789878999966898968897434--358---------899999999999
Q gi|254780197|r 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGA--SLQ---------HELFLKIVEIVE 251 (264)
Q Consensus 185 ~~~~~~Ir~~l~~~~~~~~~~i~ilYGGSV~~~N~~~l~~~~~iDG~LVG~A--Sl~---------~~~F~~Ii~~~~ 251 (264)
+.+..+||. +++.| ++++|+=|.=|+++-+++|+. ...||+.||=- |.- .-.|..|.+.++
T Consensus 249 ~~vi~~ik~-ik~~~----p~~~iIaGNVaT~e~a~~Li~-aGAD~vKVGiGpGSiCTTR~v~GvG~PQ~tAv~~~a~ 320 (467)
T pfam00478 249 EYVLEMIKW-IKKKY----PDLDVIAGNVVTAEAARELID-AGADAVKVGIGPGSICTTREVAGVGRPQLTAVYEVAD 320 (467)
T ss_pred HHHHHHHHH-HHHCC----CCCCEEEEEECCHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 889999999-87407----877378510058999999997-0777577556688656564203667750879999999
No 250
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.48 E-value=68 Score=13.83 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=15.6
Q ss_pred EEECCCCCHHHHHHHHCCCCCCEEEECHHHCCH
Q ss_conf 886277898789999668989688974343588
Q gi|254780197|r 208 ILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 (264)
Q Consensus 208 ilYGGSV~~~N~~~l~~~~~iDG~LVG~ASl~~ 240 (264)
.-||++ -.-.+.+| ..-++.=++.|..++.+
T Consensus 210 t~~g~t-p~~~~~~L-~~~Gv~~V~~~~~~~ra 240 (289)
T COG2513 210 TEFGKT-PLLTVAEL-AELGVKRVSYGLTAFRA 240 (289)
T ss_pred ECCCCC-CCCCHHHH-HHCCCEEEEECCHHHHH
T ss_conf 324898-87689999-96696499978489999
No 251
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=20.35 E-value=33 Score=15.81 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=8.2
Q ss_pred HHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999999983347479981655
Q gi|254780197|r 112 VQSKVKSACNAGLYPIVCIGET 133 (264)
Q Consensus 112 I~~K~~~al~~~l~pIlCiGE~ 133 (264)
|-+=+-+..+..|++++- ||+
T Consensus 147 vfR~igRL~~~~l~VlI~-GES 167 (471)
T TIGR01818 147 VFRAIGRLSRSDLSVLIN-GES 167 (471)
T ss_pred HHHHHHHHCCCCCEEEEE-CCC
T ss_conf 999999751696058885-575
No 252
>pfam01175 Urocanase Urocanase.
Probab=20.12 E-value=69 Score=13.78 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=3.6
Q ss_pred CCCCCCCCCH
Q ss_conf 8000111002
Q gi|254780197|r 141 RTFEVLQKQL 150 (264)
Q Consensus 141 ~~~~~l~~Ql 150 (264)
...+++.+|.
T Consensus 245 i~pDlvTDQT 254 (545)
T pfam01175 245 IRPDLVTDQT 254 (545)
T ss_pred CCCCCCCCCC
T ss_conf 9863777765
Done!