RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter asiaticus str. psy62] (264 letters) >gnl|CDD|143895 pfam00121, TIM, Triosephosphate isomerase. Length = 243 Score = 280 bits (718), Expect = 4e-76 Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 8/246 (3%) Query: 7 PLVVGNWKMHGLRLSLERIQKIVEGIRRN---SCCIDVAICPPATLIYESSRLCKTSSVI 63 P+++GNWKM+ +L ++ + + + ++V + PP T + S+ K S++ Sbjct: 1 PIIIGNWKMNK---TLAEALELAKALLAAALKNDGVEVVVAPPFTYLSPVSQALKGSNIK 57 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 +GAQ+ + G +TG++SA ML D G ++VI+GHSERR E +V KVK+A G Sbjct: 58 VGAQNVSAEDSGAFTGEVSAEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKLG 117 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRVPAV 181 L P++C+GET EE +G+T EVL++QL L + ++ +IAYEP+WAIGTG+V Sbjct: 118 LTPVLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEALKNLIIAYEPVWAIGTGKVATP 177 Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 +++H+F+R+ L + E +++RILYGGSV+ NA++ +IDG LVGGASL+ E Sbjct: 178 EQAQEVHAFIRKYLAELSKEVAEEVRILYGGSVNPDNAKELLAQPDIDGFLVGGASLKAE 237 Query: 242 LFLKIV 247 FL I+ Sbjct: 238 SFLAII 243 >gnl|CDD|73362 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.. Length = 242 Score = 274 bits (703), Expect = 1e-74 Identities = 103/242 (42%), Positives = 151/242 (62%) Query: 7 PLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGA 66 PLV GNWKM+G + K + + ++ ++V + PP T + + + S + +GA Sbjct: 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGA 60 Query: 67 QDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYP 126 Q+ + G +TG+ISA ML D GA +VI+GHSERR E V KVK+A AGL P Sbjct: 61 QNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTP 120 Query: 127 IVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEK 186 I+C+GET EE +G+T EV+ QL L + VIAYEP+WAIGTG+ + ++ Sbjct: 121 ILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQE 180 Query: 187 IHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKI 246 +H+F+R++L + + E +K+RILYGGSV+ NA + +IDG+LVGGASL+ E FL I Sbjct: 181 VHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESFLDI 240 Query: 247 VE 248 ++ Sbjct: 241 IK 242 >gnl|CDD|30498 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport and metabolism]. Length = 251 Score = 255 bits (653), Expect = 8e-69 Identities = 105/246 (42%), Positives = 158/246 (64%), Gaps = 2/246 (0%) Query: 6 RPLVVGNWKMHG-LRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVII 64 +PLV GNWKM+ + ++ + + ++VAI PP T + + L + ++ + Sbjct: 3 KPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKV 62 Query: 65 GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL 124 GAQ+ + G +TG+ISA ML D GA +V++GHSERR+ E ++ KVK+A AGL Sbjct: 63 GAQNVDPEDSGAFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGL 122 Query: 125 YPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDL 184 PI+C+GET EE +G+T EVL++QL +L + + VIAYEP+WAIGTG+ + D Sbjct: 123 TPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPADA 182 Query: 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 E++H+F+R +L + F E +K+RILYGGSV NA + + +IDG LVGGASL+ + FL Sbjct: 183 EEVHAFIRAVLAELFGAE-EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFL 241 Query: 245 KIVEIV 250 I+E + Sbjct: 242 AILEAL 247 >gnl|CDD|36856 KOG1643, KOG1643, KOG1643, Triosephosphate isomerase [Carbohydrate transport and metabolism]. Length = 247 Score = 207 bits (527), Expect = 4e-54 Identities = 95/244 (38%), Positives = 141/244 (57%), Gaps = 10/244 (4%) Query: 8 LVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTSSVIIG 65 V GNWKM+G S + I++I++ + ++V I PPA + + K + + Sbjct: 6 FVGGNWKMNG---SKQSIKEIIKTLNAAKLPANVEVVIAPPAPYLDYAKSKLK-PDIGVA 61 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+C+ + G +TG+ISA ML D GA +VILGHSERR E + K A GL Sbjct: 62 AQNCYKVKSGAFTGEISAEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLK 121 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKS-SVPVIAYEPIWAIGTGRVPAVVDL 184 I CIGET EE +G+T +V+ +QL ++ + K S VIAYEP+WAIGTG+ Sbjct: 122 VIACIGETLEEREAGKTLDVVFRQL-KAIADKVKDWSNIVIAYEPVWAIGTGKTATPEQA 180 Query: 185 EKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243 +++H+ +R+ L + RI+YGGSV+ N ++ + +IDG LVGGASL+ E F Sbjct: 181 QEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKELAKKPDIDGFLVGGASLKPE-F 239 Query: 244 LKIV 247 + I+ Sbjct: 240 VDII 243 >gnl|CDD|38205 KOG2994, KOG2994, KOG2994, Uracil DNA glycosylase [Replication, recombination and repair]. Length = 297 Score = 30.7 bits (69), Expect = 0.41 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 11/46 (23%) Query: 45 PPATLIYESSRLC---KTSSVIIGAQDCHIAEYGPYTGDISANMLA 87 PP I+ +RL K VIIG QD PY A+ L+ Sbjct: 113 PPPHQIFTWTRLTPFDKVKVVIIG-QD-------PYHNPNQAHGLS 150 >gnl|CDD|37441 KOG2230, KOG2230, KOG2230, Predicted beta-mannosidase [Carbohydrate transport and metabolism]. Length = 867 Score = 29.3 bits (65), Expect = 1.1 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 127 IVCIGETDEEYRSG-RTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 +V +G +E + G +T E++Q D P + ++ I EP++ GT +P + + Sbjct: 296 VVSMGGQVKEKKIGFKTVELVQ---DPKKPEKGRNFYFKINDEPVFLKGTNWIPVSMFRD 352 Query: 186 KIHSFVRRILLDRFPEEGQKMRILYGGSV 214 + + LLD E G M ++GG V Sbjct: 353 RENIAKTEFLLDSVAEVGMNMLRVWGGGV 381 >gnl|CDD|38493 KOG3283, KOG3283, KOG3283, 40S ribosomal protein S8 [Translation, ribosomal structure and biogenesis]. Length = 200 Score = 29.2 bits (65), Expect = 1.2 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 11 GNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCH 70 GN K LRL + EG R + +DV P + ++ L K++ V I A Sbjct: 51 GNKKYRALRLDMGNFSWGSEGTTRKTRILDVVYHPSNNELVRTNTLTKSAIVQIDAAPFR 110 Query: 71 I---AEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG-LYP 126 + YG G +L + H +R+ R+ + V S ++ AG LY Sbjct: 111 QWYESHYGLPLGRKKNKILNKKKSK-----HVQRKYAERQKNAKVDSSLEEQFAAGRLYA 165 Query: 127 IV 128 + Sbjct: 166 CI 167 >gnl|CDD|177097 CHL00206, ycf2, Ycf2; Provisional. Length = 2281 Score = 28.3 bits (63), Expect = 2.1 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 4/67 (5%) Query: 139 SGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKI-HSFVRR---I 194 SG+ FE+L K C L S F+ +P+ G G D+E + H F R I Sbjct: 252 SGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAI 311 Query: 195 LLDRFPE 201 L + Sbjct: 312 SLQNCAQ 318 >gnl|CDD|35807 KOG0587, KOG0587, KOG0587, Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]. Length = 953 Score = 28.1 bits (62), Expect = 2.7 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Query: 192 RRILLDRFPEEGQKMRILYGGS-------VDVANAEDFSLIENIDGLLV 233 + +L+D EEGQ+++++YG VD + D L +I + Sbjct: 784 KPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSIT 832 >gnl|CDD|39896 KOG4698, KOG4698, KOG4698, Uncharacterized conserved protein [Function unknown]. Length = 475 Score = 26.8 bits (59), Expect = 6.5 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 215 DVANAEDFSLIENIDGLLVG--GASLQHELFLKIVEIVERVY 254 D I N +++G GA L H LFL V ++Y Sbjct: 338 DRTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIY 379 >gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.. Length = 291 Score = 26.7 bits (60), Expect = 6.8 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 28/69 (40%) Query: 173 IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFS----LIENI 228 IG G +P +D I VR V++ E F+ L Sbjct: 214 IGAGFIPENLDRSLIDEVVR-----------------------VSDEEAFAMARRLARE- 249 Query: 229 DGLLVGGAS 237 +GLLVGG+S Sbjct: 250 EGLLVGGSS 258 >gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In humans, mutations in ASAL result in the autosomal recessive disorder argininosuccinic aciduria. Length = 435 Score = 26.7 bits (60), Expect = 7.3 Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 172 AIGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRI 208 I G + E IH + R L++R + G K+ Sbjct: 47 EIEAGAFELDPEDEDIHMAIERRLIERIGDVGGKLHT 83 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.140 0.417 Gapped Lambda K H 0.267 0.0577 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,250,084 Number of extensions: 169993 Number of successful extensions: 332 Number of sequences better than 10.0: 1 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 17 Length of query: 264 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 172 Effective length of database: 4,275,709 Effective search space: 735421948 Effective search space used: 735421948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.7 bits)