RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter asiaticus str. psy62] (264 letters) >3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.60A {Bartonella henselae} Length = 275 Score = 281 bits (720), Expect = 1e-76 Identities = 106/254 (41%), Positives = 163/254 (64%), Gaps = 1/254 (0%) Query: 1 MKVGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNSC-CIDVAICPPATLIYESSRLCKT 59 M IRP + GNWKM+G SL ++ I GI + + IC PATL+ + + Sbjct: 22 MSPNIRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGG 81 Query: 60 SSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSA 119 ++++G Q+CH +YGPYTGDISA ML + GA+ VI+GHSERR ++E +V++KV++A Sbjct: 82 ENILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAA 141 Query: 120 CNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVP 179 AGL ++C+GET EE +S + +VL +QL+ SLP + +IAYEP+WA+GTG Sbjct: 142 WRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTA 201 Query: 180 AVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239 D+ ++H+F+ + RF +EG K+R+LYGGSV +NA + +++G L+GGASL+ Sbjct: 202 TSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLK 261 Query: 240 HELFLKIVEIVERV 253 FL I ++ ++ Sbjct: 262 AIDFLTICDVYRKL 275 >1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 2vfd_A 2vfe_A* Length = 248 Score = 246 bits (628), Expect = 6e-66 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 3/244 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + V NWK +G S++ + + + +DV + P + + +L + S G Sbjct: 4 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQ-SKFSTG 62 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 Q+ G YTG++SA + D +VI+GH ERR E V+ K++++ L Sbjct: 63 IQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLK 122 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 +VC GE+ E+ +T EV+ KQ+ + ++ YEP+WAIGTG+ + Sbjct: 123 AVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQ 182 Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 +H +R+I+ D E+ ++RILYGGSV+ N E+IDG LVG ASL+ F+ Sbjct: 183 LVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKES-FV 241 Query: 245 KIVE 248 I++ Sbjct: 242 DIIK 245 >1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... Length = 248 Score = 243 bits (622), Expect = 2e-65 Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 4/244 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + V GNWKM+G + +L + + + + +V PP I + +R + + Sbjct: 5 KFFVGGNWKMNGRKKNLGELITTLNAAKVPADT-EVVCAPPTAYI-DFARQKLDPKIAVA 62 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+C+ G +TG+IS M+ DCGA +V+LGHSERR E ++ KV A + GL Sbjct: 63 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 122 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 I CIGE +E +G T +V+ +Q + S V+AYEP+WAIGTG+ + Sbjct: 123 VIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQ 182 Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 ++H +R L + Q RI+YGGSV A ++ + ++DG LVGGASL+ E F+ Sbjct: 183 EVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE-FV 241 Query: 245 KIVE 248 I+ Sbjct: 242 DIIN 245 >1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 Length = 275 Score = 241 bits (617), Expect = 9e-65 Identities = 92/244 (37%), Positives = 134/244 (54%), Gaps = 4/244 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + V GNWKM+G S++ I + NS DV + PPA + + K + V++ Sbjct: 24 KFFVGGNWKMNGDYASVDGIVTFLNASADNSSV-DVVVAPPAPYLAYAKSKLK-AGVLVA 81 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+C+ G +TG+IS M+ D G +VILGHSERR E ++ K A AG+ Sbjct: 82 AQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIK 141 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 + CIGE EE +G T +V +QL + VIAYEP+WAIGTG+ + + Sbjct: 142 VVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQ 201 Query: 186 KIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 ++H ++R L ++ P RI+YGGSV NA + +IDG LVGGASL+ + F+ Sbjct: 202 EVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPD-FV 260 Query: 245 KIVE 248 KI+ Sbjct: 261 KIIN 264 >2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, PGH; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* Length = 251 Score = 238 bits (609), Expect = 8e-64 Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 10/255 (3%) Query: 1 MKVGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRN--SCCIDVAICPPATLIYESSRLCK 58 M +P+ NWK +G + I+K+V+ + S + + P I + Sbjct: 1 MSAKPQPIAAANWKCNG---TTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLR 57 Query: 59 TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKS 118 +I AQ+ G +TG++S +L D G ++VILGHSERR + E +V KV Sbjct: 58 NPKYVISAQNAIAKS-GAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSE 116 Query: 119 ACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKS--SVPVIAYEPIWAIGTG 176 AC G I CIGET ++ + +T +V+ Q K + V+AYEP+WAIGTG Sbjct: 117 ACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTG 176 Query: 177 RVPAVVDLEKIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGG 235 +V +++H +R+ + + + K+RILYGGSV+ ANA +I+G LVGG Sbjct: 177 KVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGG 236 Query: 236 ASLQHELFLKIVEIV 250 ASL+ E F I++ Sbjct: 237 ASLKPE-FRDIIDAT 250 >1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 Length = 261 Score = 232 bits (592), Expect = 6e-62 Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 8/254 (3%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTS--- 60 + +V GNWK +G S+E + K V ++V + P I + ++ Sbjct: 5 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANG 64 Query: 61 SVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSAC 120 + I+ + + + G YTG++ ML DC +VILGHSERR E + V KVK A Sbjct: 65 ANILVSAENAWTKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAI 124 Query: 121 NAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRV 178 +AGL I CIGET+ + + +T EV+ QL + K + ++AYEP+WAIGTG+ Sbjct: 125 DAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKT 184 Query: 179 PAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237 +++H ++R+ + + +E + RI YGGSV+ AN + + +IDG LVGGAS Sbjct: 185 ATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGAS 244 Query: 238 LQHELFLKIVEIVE 251 L F I+ V Sbjct: 245 LDAAKFKTIINSVS 258 >1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* Length = 247 Score = 230 bits (587), Expect = 3e-61 Identities = 98/246 (39%), Positives = 147/246 (59%), Gaps = 7/246 (2%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTSSVI 63 V GN+K++G S + I++IVE + S ++V ICPPAT + S L K V Sbjct: 3 TFFVGGNFKLNG---SKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVT 59 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 +GAQ+ ++ G +TG+ S + + D GA +VILGHSERR ED + K K A G Sbjct: 60 VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 119 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 + I+CIGET EE ++G+T +V+++QL+ L + V+AYEP+ AIGTG D Sbjct: 120 VGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAATPED 179 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 + IH+ +R+ L + ++ ++RILYGGS + +NA F ++DG LVGGASL+ E Sbjct: 180 AQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE- 238 Query: 243 FLKIVE 248 F+ I+ Sbjct: 239 FVDIIN 244 >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Length = 225 Score = 188 bits (478), Expect = 1e-48 Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIR-RNSCCIDVAICPPATLIYESSRLCKTSSVII 64 P++ N+K + ++ + + + + P + + ++ + + Sbjct: 6 EPIIAINFKTYIEATGKRALEIAKAAEKVYKETGVTIVVAPQLVDL---RMIAESVEIPV 62 Query: 65 GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL 124 AQ + G +TG + + + GA +L HSE R+ + ++ A GL Sbjct: 63 FAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEA----AIRRAEEVGL 118 Query: 125 YPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDL 184 +VC +A EP IGTG + Sbjct: 119 MTMVCSNNPAVSAAVAALNPD------------------YVAVEPPELIGTGIPVSKAKP 160 Query: 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 E I + V + + ++++L G + ++ G+L+ + + Sbjct: 161 EVITNTVELVK-----KVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPE 215 Query: 245 KIVE 248 K + Sbjct: 216 KAIW 219 >1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 Length = 255 Score = 179 bits (454), Expect = 6e-46 Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 4/251 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + ++ GNWKMH ++ ++ + ++ +CPP T + E + ++ +G Sbjct: 4 KLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLG 63 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+ + G +TG+IS ML + G +VI+GHSERR +ED + KVK+ G+ Sbjct: 64 AQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMT 123 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLD--CSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 PI+C+GET EE G TF V++KQ+ + ++ VIAYEP+WAIGTGRV Sbjct: 124 PILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQ 183 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 +++H+F+R++L + + EE +RILYGGS+ N + ++IDG LVGGASL+ Sbjct: 184 AQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKES- 242 Query: 243 FLKIVEIVERV 253 F+++ I+ V Sbjct: 243 FIELARIMRGV 253 >3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis} Length = 283 Score = 175 bits (443), Expect = 1e-44 Identities = 96/251 (38%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 6 RPLVVGNWKMHGLRLS-LERIQKIVEGIRRNSC-CIDVAICPPATLIYESSRLCKTSSV- 62 +PL+ GNWKM+ + +QKI + +DVA+ PP T + L + Sbjct: 26 KPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLR 85 Query: 63 -IIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121 GAQD + G YTGD+S LA G ++V++GHSERR H ED +V +K +A Sbjct: 86 LTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALK 145 Query: 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP--SEFKSSVPVIAYEPIWAIGTGRVP 179 GL PIVCIGE + +G +QL SL + VIAYEP+WAIGTGRV Sbjct: 146 HGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVA 205 Query: 180 AVVDLEKIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238 + D +++ + +R+ L P +R+LYGGSV+ N D +++DG LVGGASL Sbjct: 206 SAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASL 265 Query: 239 QHELFLKIVEI 249 E F + I Sbjct: 266 DGEHFATLAAI 276 >1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} SCOP: c.1.1.1 PDB: 1aw1_A Length = 256 Score = 173 bits (440), Expect = 2e-44 Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 4/252 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKT--SSVI 63 P+V+GNWK++G + + + + +DVA+ PPA + + R S++I Sbjct: 3 HPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAII 62 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 +GAQ+ + G +TGD+S ML + GA +I+GHSERR H E V K G Sbjct: 63 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENG 122 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAV 181 L P++CIGE+D + +G T V +QLD + ++ ++ +IAYEPIWAIGTG+ Sbjct: 123 LTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATA 182 Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 D ++IH+ +R + ++ + + I YGGSV NA + +IDG LVGGA+L + Sbjct: 183 EDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAK 242 Query: 242 LFLKIVEIVERV 253 F I + Sbjct: 243 SFAAIAKAAAEA 254 >1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8} Length = 250 Score = 173 bits (439), Expect = 3e-44 Identities = 94/249 (37%), Positives = 131/249 (52%), Gaps = 8/249 (3%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRR--NSCCIDVAICPPATLIYESSRLCKTSSVI 63 R LV GNWKMH + + ++R + A+ P ++ + + + V Sbjct: 3 RVLVAGNWKMHK---TPSEARVWFAELKRLLPPLQSEAAVLPAFPILPVAKEVLAETQVG 59 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 GAQD + G YTG++SA ML+D G + I+GHSERR H E +V K K G Sbjct: 60 YGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEG 119 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAV 181 + PI+C+GE E G +QL SL VIAYEP+WAIGTG+ Sbjct: 120 ITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATP 179 Query: 182 VDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 D E +H +R+ L +R+ E ++RILYGGSV+ N D + N+DG LVGGASL+ Sbjct: 180 EDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLEL 239 Query: 241 ELFLKIVEI 249 E FL ++ I Sbjct: 240 ESFLALLRI 248 >2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis} Length = 257 Score = 173 bits (438), Expect = 5e-44 Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 11/256 (4%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRN--SCCIDVAICPPATLIYESSRLCKTSSVI 63 RP + GN+K +G SL+ I+ V I + +DV I P A + + + + Sbjct: 5 RPFIGGNFKCNG---SLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLR 61 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 I AQ+ ++ G +TG+ S ML D G VI+GHSERR E K K A G Sbjct: 62 IAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKG 121 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP----VIAYEPIWAIGTGRVP 179 + I C+GET +E ++ RT EV QL+ +S + VIAYEP+W+IGTG V Sbjct: 122 MTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVA 181 Query: 180 AVVDLEKIHSFVRRILLDRFPEEG-QKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238 E++H +R+ +++ EG Q +RI+YGGS + +N E NIDG LVGGASL Sbjct: 182 TPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASL 241 Query: 239 QHELFLKIVEIVERVY 254 + E F+ +++I+ + Sbjct: 242 KPE-FMTMIDILTKTR 256 >3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II} Length = 271 Score = 171 bits (433), Expect = 2e-43 Identities = 87/251 (34%), Positives = 134/251 (53%), Gaps = 9/251 (3%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRR-NSCCIDVAICPPATLIYESSRLCKT---SS 61 + V GN+K +G + E ++ +++ ++ S +V + P + I Sbjct: 25 KYFVGGNFKCNG---TKESLKTLIDSFKQVESSNSEVYVFPTSLHISLVKEFFGNDHPGV 81 Query: 62 VIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121 IG+Q+ G +TG++S ML D + ++GHSERR + E +V +KVK Sbjct: 82 FKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLE 141 Query: 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAV 181 GL ++CIGE+ E +G+T +V+QKQL +L S VIAYEPIWAIGTG V Sbjct: 142 NGLKIVLCIGESLSERETGKTNDVIQKQLTEALKDVSDLSNLVIAYEPIWAIGTGVVATP 201 Query: 182 VDLEKIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 ++ H+F+R + + P+ +RI+YGGSV N + +IDG LVGGASL+ Sbjct: 202 GQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGASLKP 261 Query: 241 ELFLKIVEIVE 251 F KI+E + Sbjct: 262 T-FAKIIESAQ 271 >1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A Length = 255 Score = 169 bits (429), Expect = 5e-43 Identities = 93/250 (37%), Positives = 142/250 (56%), Gaps = 2/250 (0%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 PLV+GNWK++G R + + + VAI PP I + R + S +++G Sbjct: 3 HPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLG 62 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+ ++ G +TG+ SA ML D GA ++I+GHSERR H+E ++ K GL Sbjct: 63 AQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLT 122 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAVVD 183 P++CIGET+ E +G+T EV +Q+D L ++ ++ VIAYEP+WAIGTG+ Sbjct: 123 PVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQ 182 Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243 + +H F+R + +++ I YGGSV+ +NA + +IDG LVGGASL+ + F Sbjct: 183 AQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAF 242 Query: 244 LKIVEIVERV 253 IV+ E Sbjct: 243 AVIVKAAEAA 252 >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Length = 252 Score = 169 bits (428), Expect = 7e-43 Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 +P++ GNWKM+G + + V+G + + +C P + + + + IG Sbjct: 2 KPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIG 61 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ H A+ G YTG++S ML D G +VILGHSERR E V KV +A GL Sbjct: 62 AQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121 Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 PI+C GE+ EE +G+T Q + + + + VIAYEPIWAIGTG+ D Sbjct: 122 PIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPED 181 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 + +R ++ F E + +RI YGGSV N DF + IDG LVGGASL+ Sbjct: 182 ANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPAS 241 Query: 243 FLKIVE 248 FL++VE Sbjct: 242 FLQLVE 247 >2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} Length = 259 Score = 165 bits (419), Expect = 7e-42 Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 4/244 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + +V GNWKM+G + + I ++ N +V + PA + E R C +S+ + Sbjct: 4 KFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDT-EVVVGVPAIYL-ELVRTCVPASIGVA 61 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+C+ G +TG+IS M+ D GA++VILGHSERR E ++ KV A +GL Sbjct: 62 AQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGLK 121 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 I CIGET EE +G+T EV+ +Q S VIAYEP+WAIGTG+ + Sbjct: 122 VIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKTATPQQAQ 181 Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 +H +R+ + + + G +RI YGGSV AN ++ + +IDG LVGGASL+ E F+ Sbjct: 182 DVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPDIDGFLVGGASLKPE-FV 240 Query: 245 KIVE 248 I+ Sbjct: 241 DIIN 244 >2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} Length = 233 Score = 155 bits (393), Expect = 8e-39 Identities = 66/247 (26%), Positives = 119/247 (48%), Gaps = 18/247 (7%) Query: 7 PLVVGNWKMHGLRL-SLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + + N+K S ++++ + ++ V + P + +S L +G Sbjct: 2 KIAMANFKSAMPIFKSHAYLKELEKTLKPQHF-DRVFVFPDFFGLLPNSFL----HFTLG 56 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 Q+ + + G +TG+I++ L + + +++GHSERR +E ++ K + Sbjct: 57 VQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFK 116 Query: 126 PIVCIGETDEEYRSGRTF--EVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 + CIGE G E L +QL+ + V+AYEPIWAIGT + ++ D Sbjct: 117 IVYCIGEELTTREKGFKAVKEFLSEQLENI---DLNYPNLVVAYEPIWAIGTKKSASLED 173 Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243 + H F+++ QK +LYGGSV+ NA++ I+++DGLL+G AS + E F Sbjct: 174 IYLTHGFLKQ-------ILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELENF 226 Query: 244 LKIVEIV 250 I+ + Sbjct: 227 KTIISFL 233 >2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ... Length = 250 Score = 153 bits (386), Expect = 5e-38 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 +P+ NWK +G + SL + + N + + + + +I Sbjct: 5 QPIAAANWKCNGSQQSLSELIDLFNSTSINHD-VQCVVASTFVHLAMTKERLSHPKFVIA 63 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+ + G +TG++S +L D G N+++LGHSERR + E + +V KV +A +G Sbjct: 64 AQNAIA-KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFM 122 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAVVD 183 I CIGET +E SGRT V+ Q+ K+ VIAYE +WAIGTG+V Sbjct: 123 VIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQ 182 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 ++ H+ +R + + + ++RILYGGSV+ NA +++G LVGGASL+ E Sbjct: 183 AQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE- 241 Query: 243 FLKIVEIVE 251 F+ I++ + Sbjct: 242 FVDIIKATQ 250 >2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} Length = 244 Score = 148 bits (375), Expect = 8e-37 Identities = 88/253 (34%), Positives = 132/253 (52%), Gaps = 17/253 (6%) Query: 1 MKVGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCK 58 M +P+ NWK +G S + ++E + + + + P I + Sbjct: 1 MASKPQPIAAANWKCNG---SESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLT 57 Query: 59 TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKS 118 I AQ+ A + L D G ++V+LGHSERR+ + E + +V KV Sbjct: 58 NPKFQIAAQNAGNA--------DALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQ 109 Query: 119 ACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP--SEFKSSVPVIAYEPIWAIGTG 176 AC AG + IVC+GET+EE +GRT V+ QL S+ S VIAYEP+WAIGTG Sbjct: 110 ACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTG 169 Query: 177 RVPAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGG 235 +V +++H +RR + + + ++RILYGGSV NA + +I+G LVGG Sbjct: 170 KVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGG 229 Query: 236 ASLQHELFLKIVE 248 ASL+ E F++I+E Sbjct: 230 ASLKPE-FVEIIE 241 >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Length = 226 Score = 131 bits (330), Expect = 1e-31 Identities = 45/251 (17%), Positives = 98/251 (39%), Gaps = 34/251 (13%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCKTSSVI 63 P+++ N+K +G + +R ++ + R + +++ + P + + ++ + Sbjct: 3 LPILIINFKAYG-EAAGKRAVELAKAAERAARELGVNIVVAPNHLEL---GLVSQSVDIP 58 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 + AQ + G +T +S + + G + VIL HSE + + V A + G Sbjct: 59 VYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKL----NDLARLVAKAKSLG 114 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 L +VC + + +A EP IGTGR + Sbjct: 115 LDVVVCAPDPRTSLAAAALGPH------------------AVAVEPPELIGTGRAVSRYK 156 Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-HEL 242 E I V ++ ++ G ++ + +L G+L+ A+++ + Sbjct: 157 PEAIVETVGL-----VSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDP 211 Query: 243 FLKIVEIVERV 253 + KIVE+ + + Sbjct: 212 YAKIVELAKPL 222 >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii DSM2661} Length = 219 Score = 129 bits (325), Expect = 6e-31 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 33/243 (13%) Query: 8 LVVGNWKMHGLRLSLE--RIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 ++V N+K + + I KI E + S I + + P + + + ++ + Sbjct: 2 VIVINYKTYNESIGNRGLEIAKIAEKVSEESG-ITIGVAPQFVDL---RMIVENVNIPVY 57 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ G +TG I A + DCG ++ HSE+R+ + V+ N GL Sbjct: 58 AQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINK----CKNLGLE 113 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 IVC + IA EP IGTG + + E Sbjct: 114 TIVCTNNINTSKAVAALSPD------------------CIAVEPPELIGTGIPVSKANPE 155 Query: 186 KIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLK 245 + VR E + +++L G + +L +G+L+ ++ + + Sbjct: 156 VVEGTVRA-----VKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEE 210 Query: 246 IVE 248 + Sbjct: 211 AIR 213 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 3e-04 Identities = 36/259 (13%), Positives = 72/259 (27%), Gaps = 106/259 (40%) Query: 15 MHGLR-LSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAE 73 M + L+ E++Q V + NS P + Sbjct: 338 MLSISNLTQEQVQDYVN--KTNSHL-------P-----AGK---------------QVE- 367 Query: 74 YGPYTGDIS-ANMLADCGA-NFVILGHSE---------RRIGHREDSYVVQSKV-----K 117 IS N GA N V+ G + R+ + S + QS++ K Sbjct: 368 -------ISLVN-----GAKNLVVSGPPQSLYGLNLTLRKA--KAPSGLDQSRIPFSERK 413 Query: 118 SACNAGLYPI---------------VC--IGETDEEYRSG---------RTFEVLQKQLD 151 + P+ + + + + + + L+ Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473 Query: 152 CSLPSEFKSSVPVIAYEPI-WAIGTGRVPA--VVD-----LEKIHSFVRRILLDRFPEEG 203 V I P+ W T + A ++D + R +G Sbjct: 474 SISER----IVDCIIRLPVKWETTT-QFKATHILDFGPGGASGLGVLTHRNK------DG 522 Query: 204 QKMRILYGGSVDVANAEDF 222 +R++ G++D+ +D+ Sbjct: 523 TGVRVIVAGTLDINPDDDY 541 Score = 33.8 bits (77), Expect = 0.040 Identities = 31/211 (14%), Positives = 53/211 (25%), Gaps = 97/211 (45%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 RPL + HG SLE + V P + +S+L Sbjct: 7 RPLTLS----HG---SLE-------------HVLLV----PTASFFIASQL--------- 33 Query: 66 AQDCHIAEYGPYT----GDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121 Q+ T D A+ F LG+ + E S Sbjct: 34 -QEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLV---EPS-----------K 76 Query: 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAV 181 G + +VL L EF++ Sbjct: 77 VGQFD-----------------QVLNLCLT-----EFEN-------------------CY 95 Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRIL--Y 210 ++ IH+ ++L + + ++ Y Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNY 126 Score = 33.8 bits (77), Expect = 0.044 Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 60/188 (31%) Query: 80 DISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEE--- 136 D+ + L A F GHS +G Y A A L ++ I E+ E Sbjct: 1746 DLKSKGLIPADATFA--GHS---LGE----Y--------AALASLADVMSI-ESLVEVVF 1787 Query: 137 YRSGRTFEVLQKQLDCSLP-SEF-KSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRI 194 YR G T +V ++P E +S+ +IA P GRV A E + V R+ Sbjct: 1788 YR-GMTMQV-------AVPRDELGRSNYGMIAINP------GRVAASFSQEALQYVVERV 1833 Query: 195 ------LLD--RFPEEGQKMRILYGGSVD------VANAEDFSLIENIDGLLVGGASLQH 240 L++ + E Q+ Y + D V N +F ++ ID + LQ Sbjct: 1834 GKRTGWLVEIVNYNVENQQ----YVAAGDLRALDTVTNVLNFIKLQKIDII-----ELQK 1884 Query: 241 ELFLKIVE 248 L L+ VE Sbjct: 1885 SLSLEEVE 1892 >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A {Thermomonospora fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Length = 302 Score = 34.8 bits (79), Expect = 0.019 Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 7/145 (4%) Query: 70 HIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVC 129 Y +T + + GAN V + S + V + + L ++ Sbjct: 27 PHNWYPQHTQAFAD--IKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLE 84 Query: 130 IGETDEEYRSGRTFEVLQ-KQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIH 188 + +T + Q L S + + V Sbjct: 85 VHDTTGYGEQSGASTLDQAVDYWIELKSVLQGEEDYVLINIGNEPYGNDSATVAAWATDT 144 Query: 189 SFVRRILLDRFPEEGQKMRILYGGS 213 S + R G + ++ Sbjct: 145 SAA----IQRLRAAGFEHTLVVDAP 165 >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Length = 464 Score = 29.1 bits (64), Expect = 0.92 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 3/101 (2%) Query: 72 AEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131 A Y + A+ GAN V + S+ ++D V++ + A + L ++ + Sbjct: 35 AWYKDQATTAIEGI-ANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLVAVLEVH 93 Query: 132 ETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWA 172 D + S + Sbjct: 94 --DATGYDSIASLNRAVDYWIEMRSALIGKEDTVIINIANE 132 >2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.25A {Homo sapiens} Length = 463 Score = 28.9 bits (64), Expect = 1.3 Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 22/192 (11%) Query: 18 LRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYG-- 75 L LS ++ + G+R +A ++ R ++ + I Sbjct: 94 LSLSTSKLNSLAIGLR------QIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVI 147 Query: 76 -PYTGDISAN---MLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131 D + G ++ G E + + ++ G+ V + Sbjct: 148 FESRPDCLPQVAALAIASGNGLLLKGGKE---AAHSNRILHLLTQEALSIHGVKEAVQLV 204 Query: 132 ETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYE----PIWAIGTGRVPAVVDLEKI 187 T EE L K +D +P V I P+ G VD E Sbjct: 205 NTREEVED---LCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEAS 261 Query: 188 HSFVRRILLDRF 199 V R++ D Sbjct: 262 VDKVTRLVRDSK 273 >2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme, pneumococcal cell WALL degradation, hydrolase, glycosidase, multimodular; HET: NAG AMV; 1.69A {Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB: 2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A Length = 339 Score = 28.6 bits (63), Expect = 1.4 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 9/52 (17%) Query: 77 YTGDISANMLADCGANFVILGHSERRIGHREDSYV---VQSKVKSACNAGLY 125 + G +L G I+ SE +Y+ + ++V+ + G Y Sbjct: 14 HNGYDITGILEQMGTTNTIIKISES------TTYLNPCLSAQVEQSNPIGFY 59 >2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* Length = 594 Score = 28.1 bits (62), Expect = 2.2 Identities = 6/42 (14%), Positives = 16/42 (38%) Query: 12 NWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYES 53 W+ ++R+Q+++ N I P + ++ Sbjct: 196 KWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDG 237 >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A* Length = 295 Score = 27.7 bits (61), Expect = 2.5 Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%) Query: 169 PIWAIGTGRVPAVVDLEKIH--SFVRRIL 195 PI+ G P LE + RIL Sbjct: 266 PIYFAGVSEKPE--GLEPFYPERLAGRIL 292 >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Length = 294 Score = 27.5 bits (60), Expect = 3.4 Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 3/101 (2%) Query: 72 AEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131 A Y + A+ GAN + + S+ ++D ++ ++ A + +V + Sbjct: 27 AWYKDTASTAIPAI-AEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMVAVVEVH 85 Query: 132 ETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWA 172 + + ++ + Sbjct: 86 DATGRDSRSDLNRAVDYWIEMK--DALIGKEDTVIINIANE 124 >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14 Length = 244 Score = 26.7 bits (58), Expect = 6.2 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 14/93 (15%) Query: 17 GLRLSLERIQKIVEG-IRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYG 75 G + I + E + +S D+ A + + + + IIG Sbjct: 40 GYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGI--------- 90 Query: 76 PYTGDISANMLADCGANFVILGHSERRIGHRED 108 D S M+ C + D Sbjct: 91 ----DNSQPMVERCRQHIAAYHSEIPVEILCND 119 >1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Length = 695 Score = 26.6 bits (58), Expect = 6.6 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 26/168 (15%) Query: 9 VVGNWKMHGLRLS-----LERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVI 63 V+G++++ L +S +ER KI + N C D + P + + + + Sbjct: 104 VIGHYRLAVLVMSPDGHIVERADKISFHMLFNPWCRDDMVYLPDESKLQEYVMNEDGVIY 163 Query: 64 IGAQD------CHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVK 117 +G D + ++ Y DI +L + A L +SE I HR D V + Sbjct: 164 MGTWDYIRSIPWNYGQFEDYVMDICFEVLDNSPA---ALKNSEMDIEHRSDPVYVGRTIT 220 Query: 118 SACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVI 165 + N+ V G +E Y G P + SVP++ Sbjct: 221 AMVNSNGDRGVLTGRWEEPYTDGVA------------PYRWTGSVPIL 256 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.417 Gapped Lambda K H 0.267 0.0535 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,348,356 Number of extensions: 107129 Number of successful extensions: 328 Number of sequences better than 10.0: 1 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 36 Length of query: 264 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 173 Effective length of database: 3,487,026 Effective search space: 603255498 Effective search space used: 603255498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.8 bits)