RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780197|ref|YP_003064610.1| triosephosphate isomerase
protein [Candidatus Liberibacter asiaticus str. psy62]
(264 letters)
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, cytoplasm,
gluconeogenesis, glycolysis, pentose shunt, structural
genomics; 1.60A {Bartonella henselae}
Length = 275
Score = 281 bits (720), Expect = 1e-76
Identities = 106/254 (41%), Positives = 163/254 (64%), Gaps = 1/254 (0%)
Query: 1 MKVGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNSC-CIDVAICPPATLIYESSRLCKT 59
M IRP + GNWKM+G SL ++ I GI + + IC PATL+ + +
Sbjct: 22 MSPNIRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGG 81
Query: 60 SSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSA 119
++++G Q+CH +YGPYTGDISA ML + GA+ VI+GHSERR ++E +V++KV++A
Sbjct: 82 ENILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAA 141
Query: 120 CNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVP 179
AGL ++C+GET EE +S + +VL +QL+ SLP + +IAYEP+WA+GTG
Sbjct: 142 WRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTA 201
Query: 180 AVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ 239
D+ ++H+F+ + RF +EG K+R+LYGGSV +NA + +++G L+GGASL+
Sbjct: 202 TSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLK 261
Query: 240 HELFLKIVEIVERV 253
FL I ++ ++
Sbjct: 262 AIDFLTICDVYRKL 275
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 2vfh_A* 2vff_A
2vfg_A* 1vga_A 1woa_A* 1wob_A 2vfd_A 2vfe_A*
Length = 248
Score = 246 bits (628), Expect = 6e-66
Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 3/244 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ V NWK +G S++ + + + +DV + P + + +L + S G
Sbjct: 4 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQ-SKFSTG 62
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
Q+ G YTG++SA + D +VI+GH ERR E V+ K++++ L
Sbjct: 63 IQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLK 122
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
+VC GE+ E+ +T EV+ KQ+ + ++ YEP+WAIGTG+ +
Sbjct: 123 AVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQ 182
Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
+H +R+I+ D E+ ++RILYGGSV+ N E+IDG LVG ASL+ F+
Sbjct: 183 LVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKES-FV 241
Query: 245 KIVE 248
I++
Sbjct: 242 DIIK 245
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the
ligand-free state, conformational heterogeneity,
TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1
PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1*
8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A*
1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Length = 248
Score = 243 bits (622), Expect = 2e-65
Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 4/244 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ V GNWKM+G + +L + + + + +V PP I + +R + +
Sbjct: 5 KFFVGGNWKMNGRKKNLGELITTLNAAKVPADT-EVVCAPPTAYI-DFARQKLDPKIAVA 62
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+C+ G +TG+IS M+ DCGA +V+LGHSERR E ++ KV A + GL
Sbjct: 63 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 122
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
I CIGE +E +G T +V+ +Q + S V+AYEP+WAIGTG+ +
Sbjct: 123 VIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQ 182
Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
++H +R L + Q RI+YGGSV A ++ + ++DG LVGGASL+ E F+
Sbjct: 183 EVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE-FV 241
Query: 245 KIVE 248
I+
Sbjct: 242 DIIN 245
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 241 bits (617), Expect = 9e-65
Identities = 92/244 (37%), Positives = 134/244 (54%), Gaps = 4/244 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ V GNWKM+G S++ I + NS DV + PPA + + K + V++
Sbjct: 24 KFFVGGNWKMNGDYASVDGIVTFLNASADNSSV-DVVVAPPAPYLAYAKSKLK-AGVLVA 81
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+C+ G +TG+IS M+ D G +VILGHSERR E ++ K A AG+
Sbjct: 82 AQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIK 141
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
+ CIGE EE +G T +V +QL + VIAYEP+WAIGTG+ + +
Sbjct: 142 VVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQ 201
Query: 186 KIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
++H ++R L ++ P RI+YGGSV NA + +IDG LVGGASL+ + F+
Sbjct: 202 EVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPD-FV 260
Query: 245 KIVE 248
KI+
Sbjct: 261 KIIN 264
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition
state analogue, glycolysis, pentose shunt,
gluconeogenesis, TIM, PGH; HET: PGH PGA; 0.82A
{Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 1amk_A
1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A
4tim_A* 5tim_A 6tim_A*
Length = 251
Score = 238 bits (609), Expect = 8e-64
Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 10/255 (3%)
Query: 1 MKVGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRN--SCCIDVAICPPATLIYESSRLCK 58
M +P+ NWK +G + I+K+V+ + S + + P I +
Sbjct: 1 MSAKPQPIAAANWKCNG---TTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLR 57
Query: 59 TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKS 118
+I AQ+ G +TG++S +L D G ++VILGHSERR + E +V KV
Sbjct: 58 NPKYVISAQNAIAKS-GAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSE 116
Query: 119 ACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKS--SVPVIAYEPIWAIGTG 176
AC G I CIGET ++ + +T +V+ Q K + V+AYEP+WAIGTG
Sbjct: 117 ACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTG 176
Query: 177 RVPAVVDLEKIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGG 235
+V +++H +R+ + + + K+RILYGGSV+ ANA +I+G LVGG
Sbjct: 177 KVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGG 236
Query: 236 ASLQHELFLKIVEIV 250
ASL+ E F I++
Sbjct: 237 ASLKPE-FRDIIDAT 250
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability;
1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Length = 261
Score = 232 bits (592), Expect = 6e-62
Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 8/254 (3%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTS--- 60
+ +V GNWK +G S+E + K V ++V + P I + ++
Sbjct: 5 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANG 64
Query: 61 SVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSAC 120
+ I+ + + + G YTG++ ML DC +VILGHSERR E + V KVK A
Sbjct: 65 ANILVSAENAWTKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAI 124
Query: 121 NAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRV 178
+AGL I CIGET+ + + +T EV+ QL + K + ++AYEP+WAIGTG+
Sbjct: 125 DAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKT 184
Query: 179 PAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237
+++H ++R+ + + +E + RI YGGSV+ AN + + +IDG LVGGAS
Sbjct: 185 ATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGAS 244
Query: 238 LQHELFLKIVEIVE 251
L F I+ V
Sbjct: 245 LDAAKFKTIINSVS 258
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 230 bits (587), Expect = 3e-61
Identities = 98/246 (39%), Positives = 147/246 (59%), Gaps = 7/246 (2%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTSSVI 63
V GN+K++G S + I++IVE + S ++V ICPPAT + S L K V
Sbjct: 3 TFFVGGNFKLNG---SKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVT 59
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+GAQ+ ++ G +TG+ S + + D GA +VILGHSERR ED + K K A G
Sbjct: 60 VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 119
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
+ I+CIGET EE ++G+T +V+++QL+ L + V+AYEP+ AIGTG D
Sbjct: 120 VGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAATPED 179
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
+ IH+ +R+ L + ++ ++RILYGGS + +NA F ++DG LVGGASL+ E
Sbjct: 180 AQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE- 238
Query: 243 FLKIVE 248
F+ I+
Sbjct: 239 FVDIIN 244
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 188 bits (478), Expect = 1e-48
Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIR-RNSCCIDVAICPPATLIYESSRLCKTSSVII 64
P++ N+K + ++ + + + + P + + ++ + +
Sbjct: 6 EPIIAINFKTYIEATGKRALEIAKAAEKVYKETGVTIVVAPQLVDL---RMIAESVEIPV 62
Query: 65 GAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGL 124
AQ + G +TG + + + GA +L HSE R+ + ++ A GL
Sbjct: 63 FAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEA----AIRRAEEVGL 118
Query: 125 YPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDL 184
+VC +A EP IGTG +
Sbjct: 119 MTMVCSNNPAVSAAVAALNPD------------------YVAVEPPELIGTGIPVSKAKP 160
Query: 185 EKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
E I + V + + ++++L G + ++ G+L+ + +
Sbjct: 161 EVITNTVELVK-----KVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPE 215
Query: 245 KIVE 248
K +
Sbjct: 216 KAIW 219
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 179 bits (454), Expect = 6e-46
Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 4/251 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ ++ GNWKMH ++ ++ + ++ +CPP T + E + ++ +G
Sbjct: 4 KLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLG 63
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+ + G +TG+IS ML + G +VI+GHSERR +ED + KVK+ G+
Sbjct: 64 AQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMT 123
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLD--CSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
PI+C+GET EE G TF V++KQ+ + ++ VIAYEP+WAIGTGRV
Sbjct: 124 PILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQ 183
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
+++H+F+R++L + + EE +RILYGGS+ N + ++IDG LVGGASL+
Sbjct: 184 AQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKES- 242
Query: 243 FLKIVEIVERV 253
F+++ I+ V
Sbjct: 243 FIELARIMRGV 253
>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis,
pentose shunt, structural genomics; 1.55A {Mycobacterium
tuberculosis}
Length = 283
Score = 175 bits (443), Expect = 1e-44
Identities = 96/251 (38%), Positives = 134/251 (53%), Gaps = 7/251 (2%)
Query: 6 RPLVVGNWKMHGLRLS-LERIQKIVEGIRRNSC-CIDVAICPPATLIYESSRLCKTSSV- 62
+PL+ GNWKM+ + +QKI + +DVA+ PP T + L +
Sbjct: 26 KPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLR 85
Query: 63 -IIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121
GAQD + G YTGD+S LA G ++V++GHSERR H ED +V +K +A
Sbjct: 86 LTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALK 145
Query: 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP--SEFKSSVPVIAYEPIWAIGTGRVP 179
GL PIVCIGE + +G +QL SL + VIAYEP+WAIGTGRV
Sbjct: 146 HGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVA 205
Query: 180 AVVDLEKIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238
+ D +++ + +R+ L P +R+LYGGSV+ N D +++DG LVGGASL
Sbjct: 206 SAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASL 265
Query: 239 QHELFLKIVEI 249
E F + I
Sbjct: 266 DGEHFATLAAI 276
>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus}
SCOP: c.1.1.1 PDB: 1aw1_A
Length = 256
Score = 173 bits (440), Expect = 2e-44
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 4/252 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKT--SSVI 63
P+V+GNWK++G + + + + +DVA+ PPA + + R S++I
Sbjct: 3 HPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAII 62
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+GAQ+ + G +TGD+S ML + GA +I+GHSERR H E V K G
Sbjct: 63 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENG 122
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAV 181
L P++CIGE+D + +G T V +QLD + ++ ++ +IAYEPIWAIGTG+
Sbjct: 123 LTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATA 182
Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241
D ++IH+ +R + ++ + + I YGGSV NA + +IDG LVGGA+L +
Sbjct: 183 EDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAK 242
Query: 242 LFLKIVEIVERV 253
F I +
Sbjct: 243 SFAAIAKAAAEA 254
>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics
initiative, RSGI, structural genomics; 1.60A {Thermus
thermophilus HB8}
Length = 250
Score = 173 bits (439), Expect = 3e-44
Identities = 94/249 (37%), Positives = 131/249 (52%), Gaps = 8/249 (3%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRR--NSCCIDVAICPPATLIYESSRLCKTSSVI 63
R LV GNWKMH + + ++R + A+ P ++ + + + V
Sbjct: 3 RVLVAGNWKMHK---TPSEARVWFAELKRLLPPLQSEAAVLPAFPILPVAKEVLAETQVG 59
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
GAQD + G YTG++SA ML+D G + I+GHSERR H E +V K K G
Sbjct: 60 YGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEG 119
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAV 181
+ PI+C+GE E G +QL SL VIAYEP+WAIGTG+
Sbjct: 120 ITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATP 179
Query: 182 VDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240
D E +H +R+ L +R+ E ++RILYGGSV+ N D + N+DG LVGGASL+
Sbjct: 180 EDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLEL 239
Query: 241 ELFLKIVEI 249
E FL ++ I
Sbjct: 240 ESFLALLRI 248
>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A
{Giardia intestinalis}
Length = 257
Score = 173 bits (438), Expect = 5e-44
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 11/256 (4%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRN--SCCIDVAICPPATLIYESSRLCKTSSVI 63
RP + GN+K +G SL+ I+ V I + +DV I P A + + + +
Sbjct: 5 RPFIGGNFKCNG---SLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLR 61
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
I AQ+ ++ G +TG+ S ML D G VI+GHSERR E K K A G
Sbjct: 62 IAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKG 121
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP----VIAYEPIWAIGTGRVP 179
+ I C+GET +E ++ RT EV QL+ +S + VIAYEP+W+IGTG V
Sbjct: 122 MTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVA 181
Query: 180 AVVDLEKIHSFVRRILLDRFPEEG-QKMRILYGGSVDVANAEDFSLIENIDGLLVGGASL 238
E++H +R+ +++ EG Q +RI+YGGS + +N E NIDG LVGGASL
Sbjct: 182 TPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASL 241
Query: 239 QHELFLKIVEIVERVY 254
+ E F+ +++I+ +
Sbjct: 242 KPE-FMTMIDILTKTR 256
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washington, NIH, niaid, structural
genomics; 1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 171 bits (433), Expect = 2e-43
Identities = 87/251 (34%), Positives = 134/251 (53%), Gaps = 9/251 (3%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRR-NSCCIDVAICPPATLIYESSRLCKT---SS 61
+ V GN+K +G + E ++ +++ ++ S +V + P + I
Sbjct: 25 KYFVGGNFKCNG---TKESLKTLIDSFKQVESSNSEVYVFPTSLHISLVKEFFGNDHPGV 81
Query: 62 VIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121
IG+Q+ G +TG++S ML D + ++GHSERR + E +V +KVK
Sbjct: 82 FKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLE 141
Query: 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAV 181
GL ++CIGE+ E +G+T +V+QKQL +L S VIAYEPIWAIGTG V
Sbjct: 142 NGLKIVLCIGESLSERETGKTNDVIQKQLTEALKDVSDLSNLVIAYEPIWAIGTGVVATP 201
Query: 182 VDLEKIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240
++ H+F+R + + P+ +RI+YGGSV N + +IDG LVGGASL+
Sbjct: 202 GQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGASLKP 261
Query: 241 ELFLKIVEIVE 251
F KI+E +
Sbjct: 262 T-FAKIIESAQ 271
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A
{Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Length = 255
Score = 169 bits (429), Expect = 5e-43
Identities = 93/250 (37%), Positives = 142/250 (56%), Gaps = 2/250 (0%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
PLV+GNWK++G R + + + VAI PP I + R + S +++G
Sbjct: 3 HPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLG 62
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+ ++ G +TG+ SA ML D GA ++I+GHSERR H+E ++ K GL
Sbjct: 63 AQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLT 122
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAVVD 183
P++CIGET+ E +G+T EV +Q+D L ++ ++ VIAYEP+WAIGTG+
Sbjct: 123 PVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQ 182
Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243
+ +H F+R + +++ I YGGSV+ +NA + +IDG LVGGASL+ + F
Sbjct: 183 AQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAF 242
Query: 244 LKIVEIVERV 253
IV+ E
Sbjct: 243 AVIVKAAEAA 252
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic
triose-phosphate, glycolysis; 2.40A {Geobacillus
stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Length = 252
Score = 169 bits (428), Expect = 7e-43
Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 3/246 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+P++ GNWKM+G + + V+G + + +C P + + + + IG
Sbjct: 2 KPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIG 61
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ H A+ G YTG++S ML D G +VILGHSERR E V KV +A GL
Sbjct: 62 AQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121
Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
PI+C GE+ EE +G+T Q + + + + VIAYEPIWAIGTG+ D
Sbjct: 122 PIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPED 181
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
+ +R ++ F E + +RI YGGSV N DF + IDG LVGGASL+
Sbjct: 182 ANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPAS 241
Query: 243 FLKIVE 248
FL++VE
Sbjct: 242 FLQLVE 247
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 165 bits (419), Expect = 7e-42
Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 4/244 (1%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ +V GNWKM+G + + I ++ N +V + PA + E R C +S+ +
Sbjct: 4 KFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDT-EVVVGVPAIYL-ELVRTCVPASIGVA 61
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+C+ G +TG+IS M+ D GA++VILGHSERR E ++ KV A +GL
Sbjct: 62 AQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGLK 121
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
I CIGET EE +G+T EV+ +Q S VIAYEP+WAIGTG+ +
Sbjct: 122 VIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKTATPQQAQ 181
Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
+H +R+ + + + G +RI YGGSV AN ++ + +IDG LVGGASL+ E F+
Sbjct: 182 DVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPDIDGFLVGGASLKPE-FV 240
Query: 245 KIVE 248
I+
Sbjct: 241 DIIN 244
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 155 bits (393), Expect = 8e-39
Identities = 66/247 (26%), Positives = 119/247 (48%), Gaps = 18/247 (7%)
Query: 7 PLVVGNWKMHGLRL-SLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+ + N+K S ++++ + ++ V + P + +S L +G
Sbjct: 2 KIAMANFKSAMPIFKSHAYLKELEKTLKPQHF-DRVFVFPDFFGLLPNSFL----HFTLG 56
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
Q+ + + G +TG+I++ L + + +++GHSERR +E ++ K +
Sbjct: 57 VQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFK 116
Query: 126 PIVCIGETDEEYRSGRTF--EVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
+ CIGE G E L +QL+ + V+AYEPIWAIGT + ++ D
Sbjct: 117 IVYCIGEELTTREKGFKAVKEFLSEQLENI---DLNYPNLVVAYEPIWAIGTKKSASLED 173
Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243
+ H F+++ QK +LYGGSV+ NA++ I+++DGLL+G AS + E F
Sbjct: 174 IYLTHGFLKQ-------ILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELENF 226
Query: 244 LKIVEIV 250
I+ +
Sbjct: 227 KTIISFL 233
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome,
TIM-barrel, gluconeogenesis, lipid synthesis, atomic
resolution; 1.15A {Trypanosoma brucei brucei} PDB:
2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A
1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A
1dkw_A 2vei_A 2vek_A* 2vel_A ...
Length = 250
Score = 153 bits (386), Expect = 5e-38
Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
+P+ NWK +G + SL + + N + + + + +I
Sbjct: 5 QPIAAANWKCNGSQQSLSELIDLFNSTSINHD-VQCVVASTFVHLAMTKERLSHPKFVIA 63
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ+ + G +TG++S +L D G N+++LGHSERR + E + +V KV +A +G
Sbjct: 64 AQNAIA-KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFM 122
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAVVD 183
I CIGET +E SGRT V+ Q+ K+ VIAYE +WAIGTG+V
Sbjct: 123 VIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQ 182
Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
++ H+ +R + + + ++RILYGGSV+ NA +++G LVGGASL+ E
Sbjct: 183 AQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE- 241
Query: 243 FLKIVEIVE 251
F+ I++ +
Sbjct: 242 FVDIIKATQ 250
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome,
gluconeogenesis, lipid synthesis, monomeric mutant,
glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Length = 244
Score = 148 bits (375), Expect = 8e-37
Identities = 88/253 (34%), Positives = 132/253 (52%), Gaps = 17/253 (6%)
Query: 1 MKVGIRPLVVGNWKMHGLRLSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCK 58
M +P+ NWK +G S + ++E + + + + P I +
Sbjct: 1 MASKPQPIAAANWKCNG---SESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLT 57
Query: 59 TSSVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKS 118
I AQ+ A + L D G ++V+LGHSERR+ + E + +V KV
Sbjct: 58 NPKFQIAAQNAGNA--------DALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQ 109
Query: 119 ACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLP--SEFKSSVPVIAYEPIWAIGTG 176
AC AG + IVC+GET+EE +GRT V+ QL S+ S VIAYEP+WAIGTG
Sbjct: 110 ACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTG 169
Query: 177 RVPAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGG 235
+V +++H +RR + + + ++RILYGGSV NA + +I+G LVGG
Sbjct: 170 KVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGG 229
Query: 236 ASLQHELFLKIVE 248
ASL+ E F++I+E
Sbjct: 230 ASLKPE-FVEIIE 241
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 131 bits (330), Expect = 1e-31
Identities = 45/251 (17%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCKTSSVI 63
P+++ N+K +G + +R ++ + R + +++ + P + + ++ +
Sbjct: 3 LPILIINFKAYG-EAAGKRAVELAKAAERAARELGVNIVVAPNHLEL---GLVSQSVDIP 58
Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
+ AQ + G +T +S + + G + VIL HSE + + V A + G
Sbjct: 59 VYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKL----NDLARLVAKAKSLG 114
Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
L +VC + + +A EP IGTGR +
Sbjct: 115 LDVVVCAPDPRTSLAAAALGPH------------------AVAVEPPELIGTGRAVSRYK 156
Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-HEL 242
E I V ++ ++ G ++ + +L G+L+ A+++ +
Sbjct: 157 PEAIVETVGL-----VSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDP 211
Query: 243 FLKIVEIVERV 253
+ KIVE+ + +
Sbjct: 212 YAKIVELAKPL 222
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii DSM2661}
Length = 219
Score = 129 bits (325), Expect = 6e-31
Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 33/243 (13%)
Query: 8 LVVGNWKMHGLRLSLE--RIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
++V N+K + + I KI E + S I + + P + + + ++ +
Sbjct: 2 VIVINYKTYNESIGNRGLEIAKIAEKVSEESG-ITIGVAPQFVDL---RMIVENVNIPVY 57
Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
AQ G +TG I A + DCG ++ HSE+R+ + V+ N GL
Sbjct: 58 AQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINK----CKNLGLE 113
Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
IVC + IA EP IGTG + + E
Sbjct: 114 TIVCTNNINTSKAVAALSPD------------------CIAVEPPELIGTGIPVSKANPE 155
Query: 186 KIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLK 245
+ VR E + +++L G + +L +G+L+ ++ + +
Sbjct: 156 VVEGTVRA-----VKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEE 210
Query: 246 IVE 248
+
Sbjct: 211 AIR 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.7 bits (95), Expect = 3e-04
Identities = 36/259 (13%), Positives = 72/259 (27%), Gaps = 106/259 (40%)
Query: 15 MHGLR-LSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAE 73
M + L+ E++Q V + NS P +
Sbjct: 338 MLSISNLTQEQVQDYVN--KTNSHL-------P-----AGK---------------QVE- 367
Query: 74 YGPYTGDIS-ANMLADCGA-NFVILGHSE---------RRIGHREDSYVVQSKV-----K 117
IS N GA N V+ G + R+ + S + QS++ K
Sbjct: 368 -------ISLVN-----GAKNLVVSGPPQSLYGLNLTLRKA--KAPSGLDQSRIPFSERK 413
Query: 118 SACNAGLYPI---------------VC--IGETDEEYRSG---------RTFEVLQKQLD 151
+ P+ + + + + + + L+
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 152 CSLPSEFKSSVPVIAYEPI-WAIGTGRVPA--VVD-----LEKIHSFVRRILLDRFPEEG 203
V I P+ W T + A ++D + R +G
Sbjct: 474 SISER----IVDCIIRLPVKWETTT-QFKATHILDFGPGGASGLGVLTHRNK------DG 522
Query: 204 QKMRILYGGSVDVANAEDF 222
+R++ G++D+ +D+
Sbjct: 523 TGVRVIVAGTLDINPDDDY 541
Score = 33.8 bits (77), Expect = 0.040
Identities = 31/211 (14%), Positives = 53/211 (25%), Gaps = 97/211 (45%)
Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
RPL + HG SLE + V P + +S+L
Sbjct: 7 RPLTLS----HG---SLE-------------HVLLV----PTASFFIASQL--------- 33
Query: 66 AQDCHIAEYGPYT----GDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACN 121
Q+ T D A+ F LG+ + E S
Sbjct: 34 -QEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLV---EPS-----------K 76
Query: 122 AGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAV 181
G + +VL L EF++
Sbjct: 77 VGQFD-----------------QVLNLCLT-----EFEN-------------------CY 95
Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRIL--Y 210
++ IH+ ++L + + ++ Y
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Score = 33.8 bits (77), Expect = 0.044
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 60/188 (31%)
Query: 80 DISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEE--- 136
D+ + L A F GHS +G Y A A L ++ I E+ E
Sbjct: 1746 DLKSKGLIPADATFA--GHS---LGE----Y--------AALASLADVMSI-ESLVEVVF 1787
Query: 137 YRSGRTFEVLQKQLDCSLP-SEF-KSSVPVIAYEPIWAIGTGRVPAVVDLEKIHSFVRRI 194
YR G T +V ++P E +S+ +IA P GRV A E + V R+
Sbjct: 1788 YR-GMTMQV-------AVPRDELGRSNYGMIAINP------GRVAASFSQEALQYVVERV 1833
Query: 195 ------LLD--RFPEEGQKMRILYGGSVD------VANAEDFSLIENIDGLLVGGASLQH 240
L++ + E Q+ Y + D V N +F ++ ID + LQ
Sbjct: 1834 GKRTGWLVEIVNYNVENQQ----YVAAGDLRALDTVTNVLNFIKLQKIDII-----ELQK 1884
Query: 241 ELFLKIVE 248
L L+ VE
Sbjct: 1885 SLSLEEVE 1892
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A
{Thermomonospora fusca} SCOP: c.1.8.3 PDB: 2man_A*
3man_A*
Length = 302
Score = 34.8 bits (79), Expect = 0.019
Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 7/145 (4%)
Query: 70 HIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVC 129
Y +T + + GAN V + S + V + + L ++
Sbjct: 27 PHNWYPQHTQAFAD--IKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLE 84
Query: 130 IGETDEEYRSGRTFEVLQ-KQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIH 188
+ +T + Q L S + + V
Sbjct: 85 VHDTTGYGEQSGASTLDQAVDYWIELKSVLQGEEDYVLINIGNEPYGNDSATVAAWATDT 144
Query: 189 SFVRRILLDRFPEEGQKMRILYGGS 213
S + R G + ++
Sbjct: 145 SAA----IQRLRAAGFEHTLVVDAP 165
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM,
hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Length = 464
Score = 29.1 bits (64), Expect = 0.92
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Query: 72 AEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131
A Y + A+ GAN V + S+ ++D V++ + A + L ++ +
Sbjct: 35 AWYKDQATTAIEGI-ANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLVAVLEVH 93
Query: 132 ETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWA 172
D + S +
Sbjct: 94 --DATGYDSIASLNRAVDYWIEMRSALIGKEDTVIINIANE 132
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 28.9 bits (64), Expect = 1.3
Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 22/192 (11%)
Query: 18 LRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYG-- 75
L LS ++ + G+R +A ++ R ++ + I
Sbjct: 94 LSLSTSKLNSLAIGLR------QIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVI 147
Query: 76 -PYTGDISAN---MLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131
D + G ++ G E + + ++ G+ V +
Sbjct: 148 FESRPDCLPQVAALAIASGNGLLLKGGKE---AAHSNRILHLLTQEALSIHGVKEAVQLV 204
Query: 132 ETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYE----PIWAIGTGRVPAVVDLEKI 187
T EE L K +D +P V I P+ G VD E
Sbjct: 205 NTREEVED---LCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEAS 261
Query: 188 HSFVRRILLDRF 199
V R++ D
Sbjct: 262 VDKVTRLVRDSK 273
>2j8g_A Lysozyme; antimicrobial, muein hydrolase, bacteriolytic enzyme,
pneumococcal cell WALL degradation, hydrolase,
glycosidase, multimodular; HET: NAG AMV; 1.69A
{Bacteriophage cp-1} SCOP: b.109.1.1 c.1.8.8 PDB:
2ixv_A* 2j8f_A* 2ixu_A* 1h09_A 1oba_A
Length = 339
Score = 28.6 bits (63), Expect = 1.4
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 77 YTGDISANMLADCGANFVILGHSERRIGHREDSYV---VQSKVKSACNAGLY 125
+ G +L G I+ SE +Y+ + ++V+ + G Y
Sbjct: 14 HNGYDITGILEQMGTTNTIIKISES------TTYLNPCLSAQVEQSNPIGFY 59
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A*
Length = 594
Score = 28.1 bits (62), Expect = 2.2
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 12 NWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYES 53
W+ ++R+Q+++ N I P + ++
Sbjct: 196 KWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDG 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A
2ng1_A*
Length = 295
Score = 27.7 bits (61), Expect = 2.5
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 169 PIWAIGTGRVPAVVDLEKIH--SFVRRIL 195
PI+ G P LE + RIL
Sbjct: 266 PIYFAGVSEKPE--GLEPFYPERLAGRIL 292
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN
BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Length = 294
Score = 27.5 bits (60), Expect = 3.4
Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Query: 72 AEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIG 131
A Y + A+ GAN + + S+ ++D ++ ++ A + +V +
Sbjct: 27 AWYKDTASTAIPAI-AEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMVAVVEVH 85
Query: 132 ETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWA 172
+ + ++ +
Sbjct: 86 DATGRDSRSDLNRAVDYWIEMK--DALIGKEDTVIINIANE 124
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics,
hypothetical protein, structure 2 function project, S2F;
HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP:
c.66.1.14
Length = 244
Score = 26.7 bits (58), Expect = 6.2
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 14/93 (15%)
Query: 17 GLRLSLERIQKIVEG-IRRNSCCIDVAICPPATLIYESSRLCKTSSVIIGAQDCHIAEYG 75
G + I + E + +S D+ A + + + + IIG
Sbjct: 40 GYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGI--------- 90
Query: 76 PYTGDISANMLADCGANFVILGHSERRIGHRED 108
D S M+ C + D
Sbjct: 91 ----DNSQPMVERCRQHIAAYHSEIPVEILCND 119
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 26.6 bits (58), Expect = 6.6
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 26/168 (15%)
Query: 9 VVGNWKMHGLRLS-----LERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVI 63
V+G++++ L +S +ER KI + N C D + P + + + +
Sbjct: 104 VIGHYRLAVLVMSPDGHIVERADKISFHMLFNPWCRDDMVYLPDESKLQEYVMNEDGVIY 163
Query: 64 IGAQD------CHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVK 117
+G D + ++ Y DI +L + A L +SE I HR D V +
Sbjct: 164 MGTWDYIRSIPWNYGQFEDYVMDICFEVLDNSPA---ALKNSEMDIEHRSDPVYVGRTIT 220
Query: 118 SACNAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVI 165
+ N+ V G +E Y G P + SVP++
Sbjct: 221 AMVNSNGDRGVLTGRWEEPYTDGVA------------PYRWTGSVPIL 256
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,348,356
Number of extensions: 107129
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 36
Length of query: 264
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 173
Effective length of database: 3,487,026
Effective search space: 603255498
Effective search space used: 603255498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)