RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter asiaticus str. psy62] (264 letters) >d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} Length = 252 Score = 178 bits (452), Expect = 4e-46 Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 4/251 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + ++ GNWKMH ++ ++ + ++ +CPP T + E + ++ +G Sbjct: 3 KLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLG 62 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+ + G +TG+IS ML + G +VI+GHSERR +ED + KVK+ G+ Sbjct: 63 AQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMT 122 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLD--CSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 PI+C+GET EE G TF V++KQ+ + ++ VIAYEP+WAIGTGRV Sbjct: 123 PILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQ 182 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 +++H+F+R++L + + EE +RILYGGS+ N + ++IDG LVGGASL+ Sbjct: 183 AQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKES- 241 Query: 243 FLKIVEIVERV 253 F+++ I+ V Sbjct: 242 FIELARIMRGV 252 >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 246 Score = 176 bits (447), Expect = 2e-45 Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 4/244 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + V GNWKM+G + +L + + + + +V PP I + +R + + Sbjct: 3 KFFVGGNWKMNGRKKNLGELITTLNAAKVPADT-EVVCAPPTAYI-DFARQKLDPKIAVA 60 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+C+ G +TG+IS M+ DCGA +V+LGHSERR E ++ KV A + GL Sbjct: 61 AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 120 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 I CIGE +E +G T +V+ +Q + S V+AYEP+WAIGTG+ + Sbjct: 121 VIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQ 180 Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 ++H +R L + Q RI+YGGSV A ++ + ++DG LVGGASL+ E F+ Sbjct: 181 EVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE-FV 239 Query: 245 KIVE 248 I+ Sbjct: 240 DIIN 243 >d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} Length = 255 Score = 175 bits (443), Expect = 4e-45 Identities = 93/250 (37%), Positives = 142/250 (56%), Gaps = 2/250 (0%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 PLV+GNWK++G R + + + VAI PP I + R + S +++G Sbjct: 3 HPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLG 62 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+ ++ G +TG+ SA ML D GA ++I+GHSERR H+E ++ K GL Sbjct: 63 AQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLT 122 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRVPAVVD 183 P++CIGET+ E +G+T EV +Q+D L ++ ++ VIAYEP+WAIGTG+ Sbjct: 123 PVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQ 182 Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243 + +H F+R + +++ I YGGSV+ +NA + +IDG LVGGASL+ + F Sbjct: 183 AQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAF 242 Query: 244 LKIVEIVERV 253 IV+ E Sbjct: 243 AVIVKAAEAA 252 >d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} Length = 255 Score = 173 bits (439), Expect = 1e-44 Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 4/252 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKT--SSVI 63 P+V+GNWK++G + + + + +DVA+ PPA + + R S++I Sbjct: 2 HPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAII 61 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 +GAQ+ + G +TGD+S ML + GA +I+GHSERR H E V K G Sbjct: 62 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENG 121 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAV 181 L P++CIGE+D + +G T V +QLD + ++ ++ +IAYEPIWAIGTG+ Sbjct: 122 LTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATA 181 Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241 D ++IH+ +R + ++ + + I YGGSV NA + +IDG LVGGA+L + Sbjct: 182 EDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAK 241 Query: 242 LFLKIVEIVERV 253 F I + Sbjct: 242 SFAAIAKAAAEA 253 >d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} Length = 251 Score = 171 bits (435), Expect = 4e-44 Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 +P++ GNWKM+G + + V+G + + +C P + + + + IG Sbjct: 2 KPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIG 61 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ H A+ G YTG++S ML D G +VILGHSERR E V KV +A GL Sbjct: 62 AQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121 Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 PI+C GE+ EE +G+T Q + + + + VIAYEPIWAIGTG+ D Sbjct: 122 PIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPED 181 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 + +R ++ F E + +RI YGGSV N DF + IDG LVGGASL+ Sbjct: 182 ANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPAS 241 Query: 243 FLKIVE 248 FL++VE Sbjct: 242 FLQLVE 247 >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 257 Score = 165 bits (419), Expect = 3e-42 Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 4/244 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + V GNWKM+G S++ I + NS DV + PPA + + K V++ Sbjct: 12 KFFVGGNWKMNGDYASVDGIVTFLNASADNSSV-DVVVAPPAPYLAYAKSKLKAG-VLVA 69 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 AQ+C+ G +TG+IS M+ D G +VILGHSERR E ++ K A AG+ Sbjct: 70 AQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIK 129 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 + CIGE EE +G T +V +QL + VIAYEP+WAIGTG+ + + Sbjct: 130 VVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQ 189 Query: 186 KIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 ++H ++R L ++ P RI+YGGSV NA + +IDG LVGGASL+ + F+ Sbjct: 190 EVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPD-FV 248 Query: 245 KIVE 248 KI+ Sbjct: 249 KIIN 252 >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} Length = 249 Score = 163 bits (414), Expect = 1e-41 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 10/250 (4%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRN--SCCIDVAICPPATLIYESSRLCKTSSVI 63 +P+ NWK +G + I+K+V+ + S + + P I + + Sbjct: 4 QPIAAANWKCNG---TTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLR-NPKY 59 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 + + IA+ G +TG++S +L D G ++VILGHSERR + E +V KV AC G Sbjct: 60 VISAQNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQG 119 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKS--SVPVIAYEPIWAIGTGRVPAV 181 I CIGET ++ + +T +V+ Q K + V+AYEP+WAIGTG+V Sbjct: 120 FMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATP 179 Query: 182 VDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240 +++H +R+ + + + K+RILYGGSV+ ANA +I+G LVGGASL+ Sbjct: 180 EQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP 239 Query: 241 ELFLKIVEIV 250 E F I++ Sbjct: 240 E-FRDIIDAT 248 >d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 247 Score = 162 bits (411), Expect = 2e-41 Identities = 99/246 (40%), Positives = 148/246 (60%), Gaps = 7/246 (2%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTSSVI 63 V GN+K++G S + I++IVE + S ++V ICPPAT + S L K V Sbjct: 3 TFFVGGNFKLNG---SKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVT 59 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 +GAQ+ ++ G +TG+ S + + D GA +VILGHSERR ED + K K A G Sbjct: 60 VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 119 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 + I+CIGET EE ++G+T +V+++QL+ L + V+AYEP+WAIGTG D Sbjct: 120 VGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVWAIGTGLAATPED 179 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 + IH+ +R+ L + ++ ++RILYGGS + +NA F ++DG LVGGASL+ E Sbjct: 180 AQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE- 238 Query: 243 FLKIVE 248 F+ I+ Sbjct: 239 FVDIIN 244 >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} Length = 246 Score = 162 bits (411), Expect = 3e-41 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 3/244 (1%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 + V NWK +G S++ + + + +DV + P + + +L ++ G Sbjct: 2 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSK-FSTG 60 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 Q+ G YTG++SA + D +VI+GH ERR E V+ K++++ L Sbjct: 61 IQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLK 120 Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185 +VC GE+ E+ +T EV+ KQ+ + ++ YEP+WAIGTG+ + Sbjct: 121 AVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQ 180 Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244 +H +R+I+ D E+ ++RILYGGSV+ N E+IDG LVG ASL+ F+ Sbjct: 181 LVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKES-FV 239 Query: 245 KIVE 248 I++ Sbjct: 240 DIIK 243 >d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} Length = 260 Score = 162 bits (411), Expect = 3e-41 Identities = 87/254 (34%), Positives = 135/254 (53%), Gaps = 8/254 (3%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIR--RNSCCIDVAICPPATLIYESSRLCKTS--- 60 + +V GNWK +G S+E + K V + ++V + P I + ++ Sbjct: 4 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANG 63 Query: 61 SVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSAC 120 + I+ + + + G YTG++ ML DC +VILGHSERR E + V KVK A Sbjct: 64 ANILVSAENAWTKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAI 123 Query: 121 NAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRV 178 +AGL I CIGET+ + + +T EV+ QL + K + ++AYEP+WAIGTG+ Sbjct: 124 DAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKT 183 Query: 179 PAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237 +++H ++R+ + + +E + RI YGGSV+ AN + + +IDG LVGGAS Sbjct: 184 ATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGAS 243 Query: 238 LQHELFLKIVEIVE 251 L F I+ V Sbjct: 244 LDAAKFKTIINSVS 257 >d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} Length = 249 Score = 152 bits (384), Expect = 3e-38 Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 6/249 (2%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65 +P+ NWK +G + SL + + N + + + + + + Sbjct: 4 QPIAAANWKCNGSQQSLSELIDLFNSTSIN-HDVQCVVASTFVHLAMTKE-RLSHPKFVI 61 Query: 66 AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125 A IA+ G +TG++S +L D G N+++LGHSERR + E + +V KV +A +G Sbjct: 62 AAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFM 121 Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 I CIGET +E SGRT + Q + + VIAYEP+WAIGTG+V Sbjct: 122 VIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQ 181 Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242 ++ H+ + + + + ++RILYGGSV+ NA +++G LVGGASL+ E Sbjct: 182 AQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE- 240 Query: 243 FLKIVEIVE 251 F+ I++ + Sbjct: 241 FVDIIKATQ 249 >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226 Score = 122 bits (306), Expect = 3e-29 Identities = 45/251 (17%), Positives = 98/251 (39%), Gaps = 34/251 (13%) Query: 6 RPLVVGNWKMHGLRLSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCKTSSVI 63 P+++ N+K +G + +R ++ + R + +++ + P + + ++ + Sbjct: 3 LPILIINFKAYG-EAAGKRAVELAKAAERAARELGVNIVVAPNHLEL---GLVSQSVDIP 58 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 + AQ + G +T +S + + G + VIL HSE + + V A + G Sbjct: 59 VYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKL----NDLARLVAKAKSLG 114 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 L +VC + + +A EP IGTGR + Sbjct: 115 LDVVVCAPDPRTSLAAAALGPH------------------AVAVEPPELIGTGRAVSRYK 156 Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-HEL 242 E I V ++ ++ G ++ + +L G+L+ A+++ + Sbjct: 157 PEAIVETVGL-----VSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDP 211 Query: 243 FLKIVEIVERV 253 + KIVE+ + + Sbjct: 212 YAKIVELAKPL 222 >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224 Score = 106 bits (265), Expect = 2e-24 Identities = 39/245 (15%), Positives = 84/245 (34%), Gaps = 33/245 (13%) Query: 6 RPLVVGNWKMHGLRLSLE--RIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVI 63 P++ N+K + I K E + + + + + P + + ++ + Sbjct: 5 EPIIAINFKTYIEATGKRALEIAKAAEKVYKETGV-TIVVAPQLVDL---RMIAESVEIP 60 Query: 64 IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123 + AQ + G +TG + + + GA +L HSE +R +++ ++ A G Sbjct: 61 VFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSE----NRMILADLEAAIRRAEEVG 116 Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183 L +VC +A EP IGTG + Sbjct: 117 LMTMVCSNNPAVSAAVAALNPD------------------YVAVEPPELIGTGIPVSKAK 158 Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243 E I + V + + ++++L G + ++ G+L+ + + Sbjct: 159 PEVITNTVELV-----KKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDP 213 Query: 244 LKIVE 248 K + Sbjct: 214 EKAIW 218 >d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Length = 302 Score = 32.5 bits (73), Expect = 0.034 Identities = 17/155 (10%), Positives = 37/155 (23%), Gaps = 7/155 (4%) Query: 70 HIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIV- 128 Y +T + + GAN V + S + V + + L ++ Sbjct: 27 PHNWYPQHTQAFAD--IKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLE 84 Query: 129 CIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIH 188 T +SG + L S + + V Sbjct: 85 VHDTTGYGEQSGASTLDQAVDYWIELKSVLQGEEDYVLINIGNEPYGNDSATVAA----W 140 Query: 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFS 223 + + R G + ++ + + Sbjct: 141 ATDTSAAIQRLRAAGFEHTLVVDAPNWGQDWTNTM 175 >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207 Score = 28.1 bits (62), Expect = 0.74 Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%) Query: 169 PIWAIGTGRVPAVVDLEKIHS--FVRRIL 195 PI+ G P LE + RIL Sbjct: 178 PIYFAGVSEKPE--GLEPFYPERLAGRIL 204 >d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Length = 297 Score = 26.4 bits (57), Expect = 2.5 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 2/86 (2%) Query: 85 MLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFE 144 +A+ GAN V + S+ ++D V++ + A + L ++ + + Sbjct: 40 GIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLVAVLEVHDATGYDSIASLNR 99 Query: 145 VLQKQLDCSLPSEFKSSVPVIAYEPI 170 + ++ S + Sbjct: 100 AVDYWIEMR--SALIGKEDTVIINIA 123 >d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]} Length = 355 Score = 26.0 bits (57), Expect = 3.7 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Query: 2 KVGIRPLVVGNWKMHGLRLSLER 24 K+GIRP++ G G+R SLE Sbjct: 8 KIGIRPVIDGRR--MGVRESLEE 28 >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 Score = 24.6 bits (52), Expect = 8.5 Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 183 DLEKIHSFVRRILLDRFPEEGQKMRILYG 211 +LEK+ + +IL FPE+ K LYG Sbjct: 4 ELEKVKERIEQILSQFFPEQIMKDLPLYG 32 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.140 0.417 Gapped Lambda K H 0.267 0.0579 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,020,946 Number of extensions: 47350 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 20 Length of query: 264 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 180 Effective length of database: 1,254,276 Effective search space: 225769680 Effective search space used: 225769680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.1 bits)