RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780197|ref|YP_003064610.1| triosephosphate isomerase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (264 letters)



>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
           [TaxId: 2336]}
          Length = 252

 Score =  178 bits (452), Expect = 4e-46
 Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 4/251 (1%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
           + ++ GNWKMH      ++   ++     +    ++ +CPP T + E   +    ++ +G
Sbjct: 3   KLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLG 62

Query: 66  AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
           AQ+    + G +TG+IS  ML + G  +VI+GHSERR   +ED   +  KVK+    G+ 
Sbjct: 63  AQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMT 122

Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLD--CSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
           PI+C+GET EE   G TF V++KQ+        + ++   VIAYEP+WAIGTGRV     
Sbjct: 123 PILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQ 182

Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
            +++H+F+R++L + + EE    +RILYGGS+   N     + ++IDG LVGGASL+   
Sbjct: 183 AQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKES- 241

Query: 243 FLKIVEIVERV 253
           F+++  I+  V
Sbjct: 242 FIELARIMRGV 252


>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 246

 Score =  176 bits (447), Expect = 2e-45
 Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 4/244 (1%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
           +  V GNWKM+G + +L  +   +   +  +   +V   PP   I + +R      + + 
Sbjct: 3   KFFVGGNWKMNGRKKNLGELITTLNAAKVPADT-EVVCAPPTAYI-DFARQKLDPKIAVA 60

Query: 66  AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
           AQ+C+    G +TG+IS  M+ DCGA +V+LGHSERR    E   ++  KV  A + GL 
Sbjct: 61  AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 120

Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
            I CIGE  +E  +G T +V+ +Q      +    S  V+AYEP+WAIGTG+       +
Sbjct: 121 VIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQ 180

Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
           ++H  +R  L     +   Q  RI+YGGSV  A  ++ +   ++DG LVGGASL+ E F+
Sbjct: 181 EVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE-FV 239

Query: 245 KIVE 248
            I+ 
Sbjct: 240 DIIN 243


>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
           [TaxId: 562]}
          Length = 255

 Score =  175 bits (443), Expect = 4e-45
 Identities = 93/250 (37%), Positives = 142/250 (56%), Gaps = 2/250 (0%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
            PLV+GNWK++G R  +  +   +           VAI PP   I  + R  + S +++G
Sbjct: 3   HPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLG 62

Query: 66  AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
           AQ+ ++   G +TG+ SA ML D GA ++I+GHSERR  H+E   ++  K       GL 
Sbjct: 63  AQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLT 122

Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRVPAVVD 183
           P++CIGET+ E  +G+T EV  +Q+D  L ++  ++    VIAYEP+WAIGTG+      
Sbjct: 123 PVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQ 182

Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243
            + +H F+R  +        +++ I YGGSV+ +NA +     +IDG LVGGASL+ + F
Sbjct: 183 AQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAF 242

Query: 244 LKIVEIVERV 253
             IV+  E  
Sbjct: 243 AVIVKAAEAA 252


>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus
           [TaxId: 90736]}
          Length = 255

 Score =  173 bits (439), Expect = 1e-44
 Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 4/252 (1%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKT--SSVI 63
            P+V+GNWK++G +  +  +   +         +DVA+ PPA  +  + R      S++I
Sbjct: 2   HPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAII 61

Query: 64  IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
           +GAQ+  +   G +TGD+S  ML + GA  +I+GHSERR  H E    V  K       G
Sbjct: 62  LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENG 121

Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSV--PVIAYEPIWAIGTGRVPAV 181
           L P++CIGE+D +  +G T  V  +QLD  + ++   ++   +IAYEPIWAIGTG+    
Sbjct: 122 LTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATA 181

Query: 182 VDLEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHE 241
            D ++IH+ +R  + ++     + + I YGGSV   NA  +    +IDG LVGGA+L  +
Sbjct: 182 EDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAK 241

Query: 242 LFLKIVEIVERV 253
            F  I +     
Sbjct: 242 SFAAIAKAAAEA 253


>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 251

 Score =  171 bits (435), Expect = 4e-44
 Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 3/246 (1%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
           +P++ GNWKM+G      +  + V+G    +  +   +C P   +    +    + + IG
Sbjct: 2   KPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIG 61

Query: 66  AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
           AQ  H A+ G YTG++S  ML D G  +VILGHSERR    E    V  KV +A   GL 
Sbjct: 62  AQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121

Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
           PI+C GE+ EE  +G+T      Q +   +  +  +    VIAYEPIWAIGTG+     D
Sbjct: 122 PIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPED 181

Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
              +   +R ++   F  E  + +RI YGGSV   N  DF   + IDG LVGGASL+   
Sbjct: 182 ANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPAS 241

Query: 243 FLKIVE 248
           FL++VE
Sbjct: 242 FLQLVE 247


>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 257

 Score =  165 bits (419), Expect = 3e-42
 Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 4/244 (1%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
           +  V GNWKM+G   S++ I   +     NS   DV + PPA  +  +    K   V++ 
Sbjct: 12  KFFVGGNWKMNGDYASVDGIVTFLNASADNSSV-DVVVAPPAPYLAYAKSKLKAG-VLVA 69

Query: 66  AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
           AQ+C+    G +TG+IS  M+ D G  +VILGHSERR    E   ++  K   A  AG+ 
Sbjct: 70  AQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIK 129

Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
            + CIGE  EE  +G T +V  +QL   +         VIAYEP+WAIGTG+  +    +
Sbjct: 130 VVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQ 189

Query: 186 KIHSFVRRILLDRF-PEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
           ++H ++R  L ++  P      RI+YGGSV   NA +     +IDG LVGGASL+ + F+
Sbjct: 190 EVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPD-FV 248

Query: 245 KIVE 248
           KI+ 
Sbjct: 249 KIIN 252


>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
           [TaxId: 5665]}
          Length = 249

 Score =  163 bits (414), Expect = 1e-41
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 10/250 (4%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRN--SCCIDVAICPPATLIYESSRLCKTSSVI 63
           +P+   NWK +G   +   I+K+V+    +  S  +   + P    I       + +   
Sbjct: 4   QPIAAANWKCNG---TTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLR-NPKY 59

Query: 64  IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
           + +    IA+ G +TG++S  +L D G ++VILGHSERR  + E   +V  KV  AC  G
Sbjct: 60  VISAQNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQG 119

Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKS--SVPVIAYEPIWAIGTGRVPAV 181
              I CIGET ++  + +T +V+  Q         K   +  V+AYEP+WAIGTG+V   
Sbjct: 120 FMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATP 179

Query: 182 VDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQH 240
              +++H  +R+ + +    +   K+RILYGGSV+ ANA       +I+G LVGGASL+ 
Sbjct: 180 EQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP 239

Query: 241 ELFLKIVEIV 250
           E F  I++  
Sbjct: 240 E-FRDIIDAT 248


>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 247

 Score =  162 bits (411), Expect = 2e-41
 Identities = 99/246 (40%), Positives = 148/246 (60%), Gaps = 7/246 (2%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCC--IDVAICPPATLIYESSRLCKTSSVI 63
              V GN+K++G   S + I++IVE +   S    ++V ICPPAT +  S  L K   V 
Sbjct: 3   TFFVGGNFKLNG---SKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVT 59

Query: 64  IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
           +GAQ+ ++   G +TG+ S + + D GA +VILGHSERR    ED   +  K K A   G
Sbjct: 60  VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 119

Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
           +  I+CIGET EE ++G+T +V+++QL+  L      +  V+AYEP+WAIGTG      D
Sbjct: 120 VGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVWAIGTGLAATPED 179

Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
            + IH+ +R+ L  +  ++   ++RILYGGS + +NA  F    ++DG LVGGASL+ E 
Sbjct: 180 AQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE- 238

Query: 243 FLKIVE 248
           F+ I+ 
Sbjct: 239 FVDIIN 244


>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 246

 Score =  162 bits (411), Expect = 3e-41
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 3/244 (1%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
           +  V  NWK +G   S++ +      +  +   +DV + P +     + +L ++     G
Sbjct: 2   KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSK-FSTG 60

Query: 66  AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
            Q+      G YTG++SA +  D    +VI+GH ERR    E    V+ K++++    L 
Sbjct: 61  IQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLK 120

Query: 126 PIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLE 185
            +VC GE+ E+    +T EV+ KQ+   +         ++ YEP+WAIGTG+       +
Sbjct: 121 AVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQ 180

Query: 186 KIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFL 244
            +H  +R+I+ D   E+   ++RILYGGSV+  N       E+IDG LVG ASL+   F+
Sbjct: 181 LVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKES-FV 239

Query: 245 KIVE 248
            I++
Sbjct: 240 DIIK 243


>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
           histolytica [TaxId: 5759]}
          Length = 260

 Score =  162 bits (411), Expect = 3e-41
 Identities = 87/254 (34%), Positives = 135/254 (53%), Gaps = 8/254 (3%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIR--RNSCCIDVAICPPATLIYESSRLCKTS--- 60
           + +V GNWK +G   S+E + K V        +  ++V +  P   I +  ++       
Sbjct: 4   KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANG 63

Query: 61  SVIIGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSAC 120
           + I+ + +    + G YTG++   ML DC   +VILGHSERR    E +  V  KVK A 
Sbjct: 64  ANILVSAENAWTKSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAI 123

Query: 121 NAGLYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVP--VIAYEPIWAIGTGRV 178
           +AGL  I CIGET+ +  + +T EV+  QL     +  K +    ++AYEP+WAIGTG+ 
Sbjct: 124 DAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKT 183

Query: 179 PAVVDLEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGAS 237
                 +++H ++R+ + +   +E  +  RI YGGSV+ AN  + +   +IDG LVGGAS
Sbjct: 184 ATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGAS 243

Query: 238 LQHELFLKIVEIVE 251
           L    F  I+  V 
Sbjct: 244 LDAAKFKTIINSVS 257


>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 249

 Score =  152 bits (384), Expect = 3e-38
 Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 6/249 (2%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVIIG 65
           +P+   NWK +G + SL  +  +      N   +   +      +  +     +    + 
Sbjct: 4   QPIAAANWKCNGSQQSLSELIDLFNSTSIN-HDVQCVVASTFVHLAMTKE-RLSHPKFVI 61

Query: 66  AQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLY 125
           A    IA+ G +TG++S  +L D G N+++LGHSERR  + E + +V  KV +A  +G  
Sbjct: 62  AAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFM 121

Query: 126 PIVCIGETDEEYRSGRTFE--VLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
            I CIGET +E  SGRT    + Q         +   +  VIAYEP+WAIGTG+V     
Sbjct: 122 VIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQ 181

Query: 184 LEKIHSFVRRILLDRFPEE-GQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHEL 242
            ++ H+ +   +  +   +   ++RILYGGSV+  NA       +++G LVGGASL+ E 
Sbjct: 182 AQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE- 240

Query: 243 FLKIVEIVE 251
           F+ I++  +
Sbjct: 241 FVDIIKATQ 249


>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
           [TaxId: 2271]}
          Length = 226

 Score =  122 bits (306), Expect = 3e-29
 Identities = 45/251 (17%), Positives = 98/251 (39%), Gaps = 34/251 (13%)

Query: 6   RPLVVGNWKMHGLRLSLERIQKIVEGIRRNS--CCIDVAICPPATLIYESSRLCKTSSVI 63
            P+++ N+K +G   + +R  ++ +   R +    +++ + P    +     + ++  + 
Sbjct: 3   LPILIINFKAYG-EAAGKRAVELAKAAERAARELGVNIVVAPNHLEL---GLVSQSVDIP 58

Query: 64  IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
           + AQ   +   G +T  +S   + + G + VIL HSE  +        +   V  A + G
Sbjct: 59  VYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKL----NDLARLVAKAKSLG 114

Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
           L  +VC  +      +                         +A EP   IGTGR  +   
Sbjct: 115 LDVVVCAPDPRTSLAAAALGPH------------------AVAVEPPELIGTGRAVSRYK 156

Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQ-HEL 242
            E I   V             ++ ++ G  ++  +    +L     G+L+  A+++  + 
Sbjct: 157 PEAIVETVGL-----VSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDP 211

Query: 243 FLKIVEIVERV 253
           + KIVE+ + +
Sbjct: 212 YAKIVELAKPL 222


>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
           woesei [TaxId: 2262]}
          Length = 224

 Score =  106 bits (265), Expect = 2e-24
 Identities = 39/245 (15%), Positives = 84/245 (34%), Gaps = 33/245 (13%)

Query: 6   RPLVVGNWKMHGLRLSLE--RIQKIVEGIRRNSCCIDVAICPPATLIYESSRLCKTSSVI 63
            P++  N+K +          I K  E + + +    + + P    +     + ++  + 
Sbjct: 5   EPIIAINFKTYIEATGKRALEIAKAAEKVYKETGV-TIVVAPQLVDL---RMIAESVEIP 60

Query: 64  IGAQDCHIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAG 123
           + AQ     + G +TG +    + + GA   +L HSE    +R     +++ ++ A   G
Sbjct: 61  VFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSE----NRMILADLEAAIRRAEEVG 116

Query: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVD 183
           L  +VC                                   +A EP   IGTG   +   
Sbjct: 117 LMTMVCSNNPAVSAAVAALNPD------------------YVAVEPPELIGTGIPVSKAK 158

Query: 184 LEKIHSFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFSLIENIDGLLVGGASLQHELF 243
            E I + V  +      +   ++++L G  +        ++     G+L+     + +  
Sbjct: 159 PEVITNTVELV-----KKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDP 213

Query: 244 LKIVE 248
            K + 
Sbjct: 214 EKAIW 218


>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId:
           2021]}
          Length = 302

 Score = 32.5 bits (73), Expect = 0.034
 Identities = 17/155 (10%), Positives = 37/155 (23%), Gaps = 7/155 (4%)

Query: 70  HIAEYGPYTGDISANMLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIV- 128
               Y  +T   +   +   GAN V +  S      +     V + +       L  ++ 
Sbjct: 27  PHNWYPQHTQAFAD--IKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLE 84

Query: 129 CIGETDEEYRSGRTFEVLQKQLDCSLPSEFKSSVPVIAYEPIWAIGTGRVPAVVDLEKIH 188
               T    +SG +           L S  +     +               V       
Sbjct: 85  VHDTTGYGEQSGASTLDQAVDYWIELKSVLQGEEDYVLINIGNEPYGNDSATVAA----W 140

Query: 189 SFVRRILLDRFPEEGQKMRILYGGSVDVANAEDFS 223
           +      + R    G +  ++        +  +  
Sbjct: 141 ATDTSAAIQRLRAAGFEHTLVVDAPNWGQDWTNTM 175


>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
           recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
          Length = 207

 Score = 28.1 bits (62), Expect = 0.74
 Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)

Query: 169 PIWAIGTGRVPAVVDLEKIHS--FVRRIL 195
           PI+  G    P    LE  +      RIL
Sbjct: 178 PIYFAGVSEKPE--GLEPFYPERLAGRIL 204


>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602
           [TaxId: 244966]}
          Length = 297

 Score = 26.4 bits (57), Expect = 2.5
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 85  MLADCGANFVILGHSERRIGHREDSYVVQSKVKSACNAGLYPIVCIGETDEEYRSGRTFE 144
            +A+ GAN V +  S+     ++D   V++ +  A +  L  ++ + +            
Sbjct: 40  GIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLVAVLEVHDATGYDSIASLNR 99

Query: 145 VLQKQLDCSLPSEFKSSVPVIAYEPI 170
            +   ++    S        +     
Sbjct: 100 AVDYWIEMR--SALIGKEDTVIINIA 123


>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
          second domains {Escherichia coli [TaxId: 562]}
          Length = 355

 Score = 26.0 bits (57), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 2  KVGIRPLVVGNWKMHGLRLSLER 24
          K+GIRP++ G     G+R SLE 
Sbjct: 8  KIGIRPVIDGRR--MGVRESLEE 28


>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 24.6 bits (52), Expect = 8.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 183 DLEKIHSFVRRILLDRFPEEGQKMRILYG 211
           +LEK+   + +IL   FPE+  K   LYG
Sbjct: 4   ELEKVKERIEQILSQFFPEQIMKDLPLYG 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,946
Number of extensions: 47350
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 20
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)