Query gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 09:45:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780198.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3bvs_A Alkylpurine DNA glycos 69.6 1.8 5.4E-05 22.6 1.1 14 22-35 3-16 (61)
2 >1rzh_L Reaction center protei 38.2 19 0.00056 17.0 2.0 19 18-36 88-106 (114)
3 >2wjn_M Reaction center protei 34.4 24 0.0007 16.5 2.0 19 18-36 63-81 (88)
4 >1eys_L Photosynthetic reactio 33.5 25 0.00074 16.3 2.0 19 18-36 96-114 (121)
5 >2wjn_L Reaction center protei 29.7 31 0.00093 15.8 2.0 19 18-36 89-107 (114)
6 >1eys_M Photosynthetic reactio 26.7 38 0.0011 15.3 2.0 19 18-36 64-82 (89)
7 >1rzh_M Reaction center protei 21.0 57 0.0017 14.4 2.0 16 22-37 68-83 (89)
8 >2h3o_A MERF; membrane protein 16.8 32 0.00096 15.7 -0.1 31 34-64 11-41 (61)
9 >2b6c_A Hypothetical protein E 16.4 57 0.0017 14.4 1.1 15 21-35 49-63 (97)
10 >1eh6_A O6-alkylguanine-DNA al 15.7 64 0.0019 14.1 1.2 11 26-36 60-70 (82)
No 1
>>3bvs_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA repair, hydrolase; 2.10A {Bacillus cereus} (A:179-239)
Probab=69.60 E-value=1.8 Score=22.60 Aligned_cols=14 Identities=43% Similarity=1.025 Sum_probs=12.8
Q ss_pred HHHCCHHHHHHHHH
Q ss_conf 85256148999999
Q gi|254780198|r 22 FFMNKQCAWWLRVF 35 (69)
Q Consensus 22 ffmnkqcawwlrvf 35 (69)
||.+|.-+||||-+
T Consensus 3 fFIqKAIGWaLRey 16 (61)
T 3bvs_A 3 FFIQKAIGWVLREY 16 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 2
>>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} (L:1-114)
Probab=38.21 E-value=19 Score=17.02 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=12.8
Q ss_pred HHHHHHHCCHHHHHHHHHH
Q ss_conf 9999852561489999999
Q gi|254780198|r 18 IITCFFMNKQCAWWLRVFL 36 (69)
Q Consensus 18 iitcffmnkqcawwlrvfl 36 (69)
|++-|+...-|.||+|.+.
T Consensus 88 ia~ff~~~s~~~Ww~R~y~ 106 (114)
T 1rzh_L 88 IITICATGAFVSWALREVE 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 3
>>2wjn_M Reaction center protein M chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M* 2i5n_M* 1prc_M* 1r2c_M* 1vrn_M* 1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 5prc_M* 6prc_M* 7prc_M* 3g7f_M* (M:54-141)
Probab=34.38 E-value=24 Score=16.48 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=13.1
Q ss_pred HHHHHHHCCHHHHHHHHHH
Q ss_conf 9999852561489999999
Q gi|254780198|r 18 IITCFFMNKQCAWWLRVFL 36 (69)
Q Consensus 18 iitcffmnkqcawwlrvfl 36 (69)
|++.|+...-+.||+|.+.
T Consensus 63 ia~fflt~s~~~Ww~R~y~ 81 (88)
T 2wjn_M 63 MAGLFMTLSLGSWWIRVYS 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 4
>>1eys_L Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} (L:1-121)
Probab=33.48 E-value=25 Score=16.35 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHHHHHCCHHHHHHHHHH
Q ss_conf 9999852561489999999
Q gi|254780198|r 18 IITCFFMNKQCAWWLRVFL 36 (69)
Q Consensus 18 iitcffmnkqcawwlrvfl 36 (69)
|++-|+...-+.||+|.+.
T Consensus 96 ia~fflt~s~~~Ww~R~y~ 114 (121)
T 1eys_L 96 IITICAAGAFISWALREVE 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 5
>>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2i5n_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L* (L:1-114)
Probab=29.72 E-value=31 Score=15.80 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=12.7
Q ss_pred HHHHHHHCCHHHHHHHHHH
Q ss_conf 9999852561489999999
Q gi|254780198|r 18 IITCFFMNKQCAWWLRVFL 36 (69)
Q Consensus 18 iitcffmnkqcawwlrvfl 36 (69)
|++-|+...-+.||+|.+.
T Consensus 89 ia~ff~t~s~~~Ww~R~y~ 107 (114)
T 2wjn_L 89 AITVCALGAFISWMLREVE 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 6
>>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} (M:53-141)
Probab=26.66 E-value=38 Score=15.32 Aligned_cols=19 Identities=26% Similarity=0.691 Sum_probs=12.0
Q ss_pred HHHHHHHCCHHHHHHHHHH
Q ss_conf 9999852561489999999
Q gi|254780198|r 18 IITCFFMNKQCAWWLRVFL 36 (69)
Q Consensus 18 iitcffmnkqcawwlrvfl 36 (69)
|++.|..-.-+.||+|.+.
T Consensus 64 ia~ff~~~s~~~Ww~R~y~ 82 (89)
T 1eys_M 64 IAGLFLTLSILLWWVRTYK 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 7
>>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} (M:54-142)
Probab=21.00 E-value=57 Score=14.35 Aligned_cols=16 Identities=31% Similarity=0.897 Sum_probs=10.3
Q ss_pred HHHCCHHHHHHHHHHH
Q ss_conf 8525614899999999
Q gi|254780198|r 22 FFMNKQCAWWLRVFLP 37 (69)
Q Consensus 22 ffmnkqcawwlrvflp 37 (69)
|+...-+.||.|.+.-
T Consensus 68 Flt~Svl~WW~RtY~R 83 (89)
T 1rzh_M 68 FMFVAVWSWWGRTYLR 83 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 8
>>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} (A:)
Probab=16.76 E-value=32 Score=15.72 Aligned_cols=31 Identities=29% Similarity=0.716 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 9999999999998876221335566536404
Q gi|254780198|r 34 VFLPFLLISIMIVHITHISGHVNFLLFPPLS 64 (69)
Q Consensus 34 vflpfllisimivhithisghvnfllfppls 64 (69)
-|-|.|.|-.-.|-...+.|-.++.|+|.|.
T Consensus 11 CFTPvLViL~g~vGLsA~~gyLDyvLlPaLa 41 (61)
T 2h3o_A 11 SFTPVLVILLGVVGLSALTGYLDYVLLPALA 41 (61)
T ss_dssp -----CHHHHHHHHHHHHHHHSSSSCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9319999999984799999999999999999
No 9
>>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, PSI, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} (A:124-220)
Probab=16.38 E-value=57 Score=14.36 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=13.0
Q ss_pred HHHHCCHHHHHHHHH
Q ss_conf 985256148999999
Q gi|254780198|r 21 CFFMNKQCAWWLRVF 35 (69)
Q Consensus 21 cffmnkqcawwlrvf 35 (69)
-+|.+|-.+||||..
T Consensus 49 ~~~Vqkavgw~Lre~ 63 (97)
T 2b6c_A 49 EFFIQKAIGWSLRQY 63 (97)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 10
>>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} (A:1-82)
Probab=15.71 E-value=64 Score=14.11 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=8.8
Q ss_pred CHHHHHHHHHH
Q ss_conf 61489999999
Q gi|254780198|r 26 KQCAWWLRVFL 36 (69)
Q Consensus 26 kqcawwlrvfl 36 (69)
+||.=||+.+.
T Consensus 60 ~qC~~WL~aYF 70 (82)
T 1eh6_A 60 MQCTAWLNAYF 70 (82)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
Done!