Query gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 69 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 12:30:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780198.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zfn_A RTT109, regulator of TY 22.8 35 0.0015 14.7 2.0 13 27-39 242-254 (460) 2 2b6c_A Hypothetical protein EF 22.3 25 0.001 15.5 1.1 14 22-35 173-186 (220) 3 2h3o_A MERF; membrane protein, 19.2 19 0.00078 16.2 -0.1 31 34-64 11-41 (61) 4 3jxy_A Alkylpurine DNA glycosy 9.9 83 0.0035 12.6 1.1 14 22-35 180-193 (232) 5 2j5d_A BNIP3 TM, BCL2/adenovir 8.8 98 0.0041 12.3 2.4 16 28-43 13-28 (45) 6 1waz_A MERF; protein structure 8.4 1E+02 0.0043 12.2 1.6 28 37-64 2-29 (46) 7 2wjn_L Reaction center protein 8.1 1E+02 0.0044 12.1 1.8 19 18-36 89-107 (274) 8 3it8_D 2L protein; MHC class I 8.0 1.1E+02 0.0045 12.1 1.8 19 23-41 158-176 (324) 9 1rzh_M Reaction center protein 7.5 1.1E+02 0.0047 11.9 1.8 18 19-36 118-135 (307) 10 2kdu_B MUNC13-1, protein UNC-1 6.5 1.3E+02 0.0053 11.6 1.2 7 29-35 6-12 (36) No 1 >2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3 lysine 56 acetylation, DNA damage, DNA repair, nucleus, transcription; HET: ALY ACO; 1.90A {Saccharomyces cerevisiae} PDB: 2rim_A 3d35_A* 3cz7_A* Probab=22.75 E-value=35 Score=14.68 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1489999999999 Q gi|254780198|r 27 QCAWWLRVFLPFL 39 (69) Q Consensus 27 qcawwlrvflpfl 39 (69) -|.||.||.-|.+ T Consensus 242 LikWW~rvld~il 254 (460) T 2zfn_A 242 LMKWWGFILDRLL 254 (460) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999864998 No 2 >2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, PSI, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Probab=22.33 E-value=25 Score=15.52 Aligned_cols=14 Identities=43% Similarity=1.018 Sum_probs=10.4 Q ss_pred HHHCCHHHHHHHHH Q ss_conf 85256148999999 Q gi|254780198|r 22 FFMNKQCAWWLRVF 35 (69) Q Consensus 22 ffmnkqcawwlrvf 35 (69) ||++|-.+|+||.. T Consensus 173 ~~I~KAigW~LRe~ 186 (220) T 2b6c_A 173 FFIQKAIGWSLRQY 186 (220) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 3 >2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} Probab=19.17 E-value=19 Score=16.21 Aligned_cols=31 Identities=29% Similarity=0.716 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEEECCCC Q ss_conf 9999999999998876221335566536404 Q gi|254780198|r 34 VFLPFLLISIMIVHITHISGHVNFLLFPPLS 64 (69) Q Consensus 34 vflpfllisimivhithisghvnfllfppls 64 (69) -|-|.|.|-.-.|-...+-|-.++.|+|.|. T Consensus 11 CFTPvLVil~g~vGLsa~~gyLDyvLlPaLa 41 (61) T 2h3o_A 11 SFTPVLVILLGVVGLSALTGYLDYVLLPALA 41 (61) T ss_dssp -----CHHHHHHHHHHHHHHHSSSSCCTTHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8119999999984799999999999999999 No 4 >3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex; HET: DNA; 1.50A {Bacillus cereus atcc 10987} PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* Probab=9.86 E-value=83 Score=12.63 Aligned_cols=14 Identities=43% Similarity=1.025 Sum_probs=9.5 Q ss_pred HHHCCHHHHHHHHH Q ss_conf 85256148999999 Q gi|254780198|r 22 FFMNKQCAWWLRVF 35 (69) Q Consensus 22 ffmnkqcawwlrvf 35 (69) +|.+|-.+|.||.. T Consensus 180 ~~VqkaigW~Lre~ 193 (232) T 3jxy_A 180 FFIQKAIGWVLREY 193 (232) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 5 >2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A Probab=8.79 E-value=98 Score=12.25 Aligned_cols=16 Identities=56% Similarity=0.802 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 4899999999999999 Q gi|254780198|r 28 CAWWLRVFLPFLLISI 43 (69) Q Consensus 28 cawwlrvflpfllisi 43 (69) .+-.|.||+|-+++|- T Consensus 13 SaefLkvfiPSl~~sh 28 (45) T 2j5d_A 13 SAEFLKVFLPSLLLSH 28 (45) T ss_dssp CHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 6999999989999999 No 6 >1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii} Probab=8.40 E-value=1e+02 Score=12.16 Aligned_cols=28 Identities=29% Similarity=0.737 Sum_probs=20.3 Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCC Q ss_conf 9999999998876221335566536404 Q gi|254780198|r 37 PFLLISIMIVHITHISGHVNFLLFPPLS 64 (69) Q Consensus 37 pfllisimivhithisghvnfllfppls 64 (69) |.|.|-.-.+-+.-..|-..+.|+|.|. T Consensus 2 PvLvillG~vGlsal~GyLDyvLlPALa 29 (46) T 1waz_A 2 PVLVILLGVVGLSALTGYLDYVLLPALA 29 (46) T ss_dssp HHHHHHHHHHHHHHCCSCCCCCSCCHHH T ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6886209652399999999999999999 No 7 >2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 2i5n_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L* Probab=8.09 E-value=1e+02 Score=12.08 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=12.1 Q ss_pred HHHHHHHCCHHHHHHHHHH Q ss_conf 9999852561489999999 Q gi|254780198|r 18 IITCFFMNKQCAWWLRVFL 36 (69) Q Consensus 18 iitcffmnkqcawwlrvfl 36 (69) +++.|+...-+.||+|.+. T Consensus 89 i~~f~~~~s~~sW~~R~~e 107 (274) T 2wjn_L 89 AITVCALGAFISWMLREVE 107 (274) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999 No 8 >3it8_D 2L protein; MHC class I homolog, cell membrane, cytokine, disulfide bond, glycoprotein, lipoprotein, membrane, myristate, phosphoprotein; HET: NAG; 2.80A {Yaba-like disease virus} Probab=7.97 E-value=1.1e+02 Score=12.05 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=14.7 Q ss_pred HHCCHHHHHHHHHHHHHHH Q ss_conf 5256148999999999999 Q gi|254780198|r 23 FMNKQCAWWLRVFLPFLLI 41 (69) Q Consensus 23 fmnkqcawwlrvflpflli 41 (69) ++...|-+||+-+|.+--- T Consensus 158 YLe~~CiewL~kYLe~Gk~ 176 (324) T 3it8_D 158 FEYMGCSLAILDYQKMAKG 176 (324) T ss_dssp HHHTHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 5351679999999984344 No 9 >1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M* 1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M* 1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M* 1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ... Probab=7.50 E-value=1.1e+02 Score=11.93 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=10.1 Q ss_pred HHHHHHCCHHHHHHHHHH Q ss_conf 999852561489999999 Q gi|254780198|r 19 ITCFFMNKQCAWWLRVFL 36 (69) Q Consensus 19 itcffmnkqcawwlrvfl 36 (69) ++.|+.-.-..||+|.+. T Consensus 118 ~~~f~~~s~~~Ww~R~ye 135 (307) T 1rzh_M 118 ASFFMFVAVWSWWGRTYL 135 (307) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 10 >2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis} Probab=6.46 E-value=1.3e+02 Score=11.62 Aligned_cols=7 Identities=71% Similarity=1.370 Sum_probs=0.0 Q ss_pred HHHHHHH Q ss_conf 8999999 Q gi|254780198|r 29 AWWLRVF 35 (69) Q Consensus 29 awwlrvf 35 (69) |-|+|.| T Consensus 6 a~WlRa~ 12 (36) T 2kdu_B 6 ANWLRAF 12 (36) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 6899999 Done!