Query         gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 69
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 23 12:30:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780198.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2zfn_A RTT109, regulator of TY  22.8      35  0.0015   14.7   2.0   13   27-39    242-254 (460)
  2 2b6c_A Hypothetical protein EF  22.3      25   0.001   15.5   1.1   14   22-35    173-186 (220)
  3 2h3o_A MERF; membrane protein,  19.2      19 0.00078   16.2  -0.1   31   34-64     11-41  (61)
  4 3jxy_A Alkylpurine DNA glycosy   9.9      83  0.0035   12.6   1.1   14   22-35    180-193 (232)
  5 2j5d_A BNIP3 TM, BCL2/adenovir   8.8      98  0.0041   12.3   2.4   16   28-43     13-28  (45)
  6 1waz_A MERF; protein structure   8.4   1E+02  0.0043   12.2   1.6   28   37-64      2-29  (46)
  7 2wjn_L Reaction center protein   8.1   1E+02  0.0044   12.1   1.8   19   18-36     89-107 (274)
  8 3it8_D 2L protein; MHC class I   8.0 1.1E+02  0.0045   12.1   1.8   19   23-41    158-176 (324)
  9 1rzh_M Reaction center protein   7.5 1.1E+02  0.0047   11.9   1.8   18   19-36    118-135 (307)
 10 2kdu_B MUNC13-1, protein UNC-1   6.5 1.3E+02  0.0053   11.6   1.2    7   29-35      6-12  (36)

No 1  
>2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3 lysine 56 acetylation, DNA damage, DNA repair, nucleus, transcription; HET: ALY ACO; 1.90A {Saccharomyces cerevisiae} PDB: 2rim_A 3d35_A* 3cz7_A*
Probab=22.75  E-value=35  Score=14.68  Aligned_cols=13  Identities=23%  Similarity=0.618  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1489999999999
Q gi|254780198|r   27 QCAWWLRVFLPFL   39 (69)
Q Consensus        27 qcawwlrvflpfl   39 (69)
                      -|.||.||.-|.+
T Consensus       242 LikWW~rvld~il  254 (460)
T 2zfn_A          242 LMKWWGFILDRLL  254 (460)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999864998


No 2  
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, PSI, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=22.33  E-value=25  Score=15.52  Aligned_cols=14  Identities=43%  Similarity=1.018  Sum_probs=10.4

Q ss_pred             HHHCCHHHHHHHHH
Q ss_conf             85256148999999
Q gi|254780198|r   22 FFMNKQCAWWLRVF   35 (69)
Q Consensus        22 ffmnkqcawwlrvf   35 (69)
                      ||++|-.+|+||..
T Consensus       173 ~~I~KAigW~LRe~  186 (220)
T 2b6c_A          173 FFIQKAIGWSLRQY  186 (220)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 3  
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii}
Probab=19.17  E-value=19  Score=16.21  Aligned_cols=31  Identities=29%  Similarity=0.716  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf             9999999999998876221335566536404
Q gi|254780198|r   34 VFLPFLLISIMIVHITHISGHVNFLLFPPLS   64 (69)
Q Consensus        34 vflpfllisimivhithisghvnfllfppls   64 (69)
                      -|-|.|.|-.-.|-...+-|-.++.|+|.|.
T Consensus        11 CFTPvLVil~g~vGLsa~~gyLDyvLlPaLa   41 (61)
T 2h3o_A           11 SFTPVLVILLGVVGLSALTGYLDYVLLPALA   41 (61)
T ss_dssp             -----CHHHHHHHHHHHHHHHSSSSCCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8119999999984799999999999999999


No 4  
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex; HET: DNA; 1.50A {Bacillus cereus atcc 10987} PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=9.86  E-value=83  Score=12.63  Aligned_cols=14  Identities=43%  Similarity=1.025  Sum_probs=9.5

Q ss_pred             HHHCCHHHHHHHHH
Q ss_conf             85256148999999
Q gi|254780198|r   22 FFMNKQCAWWLRVF   35 (69)
Q Consensus        22 ffmnkqcawwlrvf   35 (69)
                      +|.+|-.+|.||..
T Consensus       180 ~~VqkaigW~Lre~  193 (232)
T 3jxy_A          180 FFIQKAIGWVLREY  193 (232)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 5  
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=8.79  E-value=98  Score=12.25  Aligned_cols=16  Identities=56%  Similarity=0.802  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             4899999999999999
Q gi|254780198|r   28 CAWWLRVFLPFLLISI   43 (69)
Q Consensus        28 cawwlrvflpfllisi   43 (69)
                      .+-.|.||+|-+++|-
T Consensus        13 SaefLkvfiPSl~~sh   28 (45)
T 2j5d_A           13 SAEFLKVFLPSLLLSH   28 (45)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             6999999989999999


No 6  
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=8.40  E-value=1e+02  Score=12.16  Aligned_cols=28  Identities=29%  Similarity=0.737  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf             9999999998876221335566536404
Q gi|254780198|r   37 PFLLISIMIVHITHISGHVNFLLFPPLS   64 (69)
Q Consensus        37 pfllisimivhithisghvnfllfppls   64 (69)
                      |.|.|-.-.+-+.-..|-..+.|+|.|.
T Consensus         2 PvLvillG~vGlsal~GyLDyvLlPALa   29 (46)
T 1waz_A            2 PVLVILLGVVGLSALTGYLDYVLLPALA   29 (46)
T ss_dssp             HHHHHHHHHHHHHHCCSCCCCCSCCHHH
T ss_pred             CEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6886209652399999999999999999


No 7  
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 2i5n_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=8.09  E-value=1e+02  Score=12.08  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=12.1

Q ss_pred             HHHHHHHCCHHHHHHHHHH
Q ss_conf             9999852561489999999
Q gi|254780198|r   18 IITCFFMNKQCAWWLRVFL   36 (69)
Q Consensus        18 iitcffmnkqcawwlrvfl   36 (69)
                      +++.|+...-+.||+|.+.
T Consensus        89 i~~f~~~~s~~sW~~R~~e  107 (274)
T 2wjn_L           89 AITVCALGAFISWMLREVE  107 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999


No 8  
>3it8_D 2L protein; MHC class I homolog, cell membrane, cytokine, disulfide bond, glycoprotein, lipoprotein, membrane, myristate, phosphoprotein; HET: NAG; 2.80A {Yaba-like disease virus}
Probab=7.97  E-value=1.1e+02  Score=12.05  Aligned_cols=19  Identities=11%  Similarity=0.071  Sum_probs=14.7

Q ss_pred             HHCCHHHHHHHHHHHHHHH
Q ss_conf             5256148999999999999
Q gi|254780198|r   23 FMNKQCAWWLRVFLPFLLI   41 (69)
Q Consensus        23 fmnkqcawwlrvflpflli   41 (69)
                      ++...|-+||+-+|.+---
T Consensus       158 YLe~~CiewL~kYLe~Gk~  176 (324)
T 3it8_D          158 FEYMGCSLAILDYQKMAKG  176 (324)
T ss_dssp             HHHTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             5351679999999984344


No 9  
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M* 1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M* 1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M* 1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Probab=7.50  E-value=1.1e+02  Score=11.93  Aligned_cols=18  Identities=28%  Similarity=0.813  Sum_probs=10.1

Q ss_pred             HHHHHHCCHHHHHHHHHH
Q ss_conf             999852561489999999
Q gi|254780198|r   19 ITCFFMNKQCAWWLRVFL   36 (69)
Q Consensus        19 itcffmnkqcawwlrvfl   36 (69)
                      ++.|+.-.-..||+|.+.
T Consensus       118 ~~~f~~~s~~~Ww~R~ye  135 (307)
T 1rzh_M          118 ASFFMFVAVWSWWGRTYL  135 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999


No 10 
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=6.46  E-value=1.3e+02  Score=11.62  Aligned_cols=7  Identities=71%  Similarity=1.370  Sum_probs=0.0

Q ss_pred             HHHHHHH
Q ss_conf             8999999
Q gi|254780198|r   29 AWWLRVF   35 (69)
Q Consensus        29 awwlrvf   35 (69)
                      |-|+|.|
T Consensus         6 a~WlRa~   12 (36)
T 2kdu_B            6 ANWLRAF   12 (36)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             6899999


Done!