BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62] (69 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62] Length = 69 Score = 135 bits (341), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 69/69 (100%), Positives = 69/69 (100%) Query: 1 MIQHFWIAVDVFVIVATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHVNFLLF 60 MIQHFWIAVDVFVIVATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHVNFLLF Sbjct: 1 MIQHFWIAVDVFVIVATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHVNFLLF 60 Query: 61 PPLSMIFLK 69 PPLSMIFLK Sbjct: 61 PPLSMIFLK 69 >gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 23.1 bits (48), Expect = 0.90, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 7/34 (20%) Query: 33 RVFLPFLLISIMIVHITHISGHVNFLLFPPLSMI 66 R FLP +L ++ SGH F+L+ PL + Sbjct: 26 RGFLPIVLDNLS-------SGHAEFVLWGPLEQV 52 >gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 21.9 bits (45), Expect = 2.1, Method: Composition-based stats. Identities = 6/19 (31%), Positives = 9/19 (47%) Query: 13 VIVATIITCFFMNKQCAWW 31 V+ A C + QC +W Sbjct: 51 VVTALFTQCMVFDPQCPYW 69 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 21.9 bits (45), Expect = 2.3, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 15 VATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHV 55 + +IT M AW +R + ++ S I H+ +S V Sbjct: 39 IVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTV 79 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.344 0.150 0.535 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,374 Number of Sequences: 1233 Number of extensions: 1392 Number of successful extensions: 9 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of query: 69 length of database: 328,796 effective HSP length: 40 effective length of query: 29 effective length of database: 279,476 effective search space: 8104804 effective search space used: 8104804 T: 11 A: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.6 bits) S2: 31 (16.5 bits)