BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780198|ref|YP_003064611.1| hypothetical protein
CLIBASIA_00415 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780198|ref|YP_003064611.1| hypothetical protein CLIBASIA_00415 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 69

 Score =  135 bits (341), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MIQHFWIAVDVFVIVATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHVNFLLF 60
          MIQHFWIAVDVFVIVATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHVNFLLF
Sbjct: 1  MIQHFWIAVDVFVIVATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHVNFLLF 60

Query: 61 PPLSMIFLK 69
          PPLSMIFLK
Sbjct: 61 PPLSMIFLK 69


>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 333

 Score = 23.1 bits (48), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 7/34 (20%)

Query: 33 RVFLPFLLISIMIVHITHISGHVNFLLFPPLSMI 66
          R FLP +L ++        SGH  F+L+ PL  +
Sbjct: 26 RGFLPIVLDNLS-------SGHAEFVLWGPLEQV 52


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 21.9 bits (45), Expect = 2.1,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 13 VIVATIITCFFMNKQCAWW 31
          V+ A    C   + QC +W
Sbjct: 51 VVTALFTQCMVFDPQCPYW 69


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 21.9 bits (45), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 15 VATIITCFFMNKQCAWWLRVFLPFLLISIMIVHITHISGHV 55
          +  +IT   M    AW +R  +  ++ S  I H+  +S  V
Sbjct: 39 IVAMITVSLMTSCSAWIMRDVMNAMVASTDIFHVIVVSSTV 79


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.344    0.150    0.535 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,374
Number of Sequences: 1233
Number of extensions: 1392
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 69
length of database: 328,796
effective HSP length: 40
effective length of query: 29
effective length of database: 279,476
effective search space:  8104804
effective search space used:  8104804
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 31 (16.5 bits)