Query gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs 20 out of 22
Neff 2.5
Searched_HMMs 33803
Date Mon May 23 14:06:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780199.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2vgd_A Enxyn11A; glycoside hy 38.5 27 0.0008 15.7 6.8 104 31-137 22-154 (218)
2 >3iwj_A Putative aminoaldehyde 36.6 29 0.00086 15.5 3.4 31 39-77 8-38 (314)
3 >1xhc_A NADH oxidase /nitrite 31.6 17 0.00051 16.9 0.9 16 41-56 23-38 (67)
4 >2v3a_A Rubredoxin reductase; 19.3 60 0.0018 13.6 2.0 23 36-58 13-38 (58)
5 >1o04_A Aldehyde dehydrogenase 19.0 61 0.0018 13.5 4.3 46 24-77 5-50 (313)
6 >3b4w_A Aldehyde dehydrogenase 17.2 67 0.002 13.2 3.4 30 40-77 10-39 (306)
7 >1szw_A TRNA pseudouridine syn 16.5 40 0.0012 14.6 0.3 26 40-65 185-211 (237)
8 >1u5x_A Tumor necrosis factor 15.8 73 0.0021 13.0 2.4 87 44-131 25-115 (140)
9 >2zum_A 458AA long hypothetica 15.6 52 0.0015 13.9 0.7 53 1-54 1-60 (458)
10 >3emi_A HIA (adhesin); non-adh 15.2 64 0.0019 13.4 1.1 12 60-72 78-89 (89)
No 1
>>2vgd_A Enxyn11A; glycoside hydrolase, xylanase, beta jelly roll, hydrolase; HET: XYP FX3; 1.8A {Escherichia coli} PDB: 2vuj_A 2vul_A* (A:)
Probab=38.50 E-value=27 Score=15.65 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCEE-----EEECCCCEEEEEEE-CCEEEEECCCCCCCEEE--------------EEEEEEECCCEEEE
Q ss_conf 665333767656202-----57268981446860-87899842577774665--------------44688516857999
Q gi|254780199|r 31 VDSSELLPEPMDITG-----YWEDDNGILSYFQK-DGKFKTISTDGSSSVLA--------------TGSYHVKINQDVEI 90 (160)
Q Consensus 31 ~~~~~~~P~P~gVeG-----~W~D~NGivSsf~~-~G~F~TrstDGTn~~LA--------------~GTY~~~~~~~VEI 90 (160)
..+...-|.-+|..+ .|.|..|-++++.. +|.|...=.+ .+..|+ +|+|...++..+-
T Consensus 22 ~~~~~~t~n~~g~~~Gy~Y~~W~d~~g~~~~t~~~gG~fs~~W~n-~gnfv~gkGw~~gs~r~i~y~g~~~~~GnsYl~- 99 (218)
T 2vgd_A 22 NAQTCLTSSQTGTNNGFYYSFWKDSPGTVNFCLQSGGRYTSNWSG-INNWVGGKGWQTGSRRNITYSGSFNSPGNGYLA- 99 (218)
T ss_dssp -CCEEECSCEEEEETTEEEEEEECSSSEEEEEECSTTEEEEEEES-CSEEEEEEEESSCCSCEEEEEEEEECSSSEEEE-
T ss_pred CCCEEEECCCCCEECCEEEEEEECCCCCEEEEECCCCEEEEEECC-CCCEEEECCCCCCCCCEEEEEEEECCCCCEEEE-
T ss_conf 563076158730169989999967998578881899889999828-998897686579998479885787689978999-
Q ss_pred EEEECCCCCCEEE---EEEE-ECC-----CEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 9972003883058---9996-063-----436676067987999973321077778
Q gi|254780199|r 91 KLTSLIRNTSGKI---QCQF-LDS-----NKLNCLAKDQKQFYLRRTHLTELPSSK 137 (160)
Q Consensus 91 n~tSlvR~T~skV---nC~L-~sp-----sQLnCTS~sG~QF~L~Rt~~~~~~~~~ 137 (160)
+|--.|+-.+-- .--- .+| ..+---+++|..+.+-|+....-||-.
T Consensus 100 -vYGWt~nPLvEYYIVe~~g~~~P~~s~~t~~Gtvt~DG~tY~I~~~~R~nqPSI~ 154 (218)
T 2vgd_A 100 -LYGWTTNPLVEYYVVDSWGSWRPPGSDGTFLGTVNSDGGTYDIYRAQRVNAPSII 154 (218)
T ss_dssp -EEEEEETTTEEEEEEEEESSSCTTGGGSEEEEEEEETTEEEEEEEEEEEEECCTT
T ss_pred -EEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEEECCCCCC
T ss_conf -9941489827899996654658998887083379989968999998673178525
No 2
>>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} PDB: 3iwk_A* (A:1-263,A:453-503)
Probab=36.65 E-value=29 Score=15.48 Aligned_cols=31 Identities=13% Similarity=0.351 Sum_probs=21.5
Q ss_pred CCCCCEEEEECCCCEEEEEEECCEEEEECCCCCCCEEEE
Q ss_conf 765620257268981446860878998425777746654
Q gi|254780199|r 39 EPMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLAT 77 (160)
Q Consensus 39 ~P~gVeG~W~D~NGivSsf~~~G~F~TrstDGTn~~LA~ 77 (160)
...=|+|+|++..+ +.+|+.+.+- |++++++
T Consensus 8 ~~~~I~G~w~~~~~-------g~~~~v~nP~-tge~ia~ 38 (314)
T 3iwj_A 8 RQLFINGDWKAPVL-------NKRIPVINPA-TQNIIGD 38 (314)
T ss_dssp CCEEETTEEECCTT-------CCEEEEECTT-TCCEEEE
T ss_pred CCEEECCEECCCCC-------CCEEEEECCC-CCCEEEE
T ss_conf 78778985317999-------9989844799-9887789
No 3
>>1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} (A:301-367)
Probab=31.64 E-value=17 Score=16.88 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=11.5
Q ss_pred CCCEEEEECCCCEEEE
Q ss_conf 5620257268981446
Q gi|254780199|r 41 MDITGYWEDDNGILSY 56 (160)
Q Consensus 41 ~gVeG~W~D~NGivSs 56 (160)
.+=||+|+|.|--+-|
T Consensus 23 ~~geG~W~De~tK~Fy 38 (67)
T 1xhc_A 23 TKGEGKWIEDNTKVFY 38 (67)
T ss_dssp CSSCEEEEETTEEEEC
T ss_pred CHHHHHHCCCCEEEEE
T ss_conf 9999965287589999
No 4
>>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, FAD, NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* (A:316-373)
Probab=19.35 E-value=60 Score=13.56 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=17.6
Q ss_pred CCCCCCCCEEEEE---CCCCEEEEEE
Q ss_conf 3767656202572---6898144686
Q gi|254780199|r 36 LLPEPMDITGYWE---DDNGILSYFQ 58 (160)
Q Consensus 36 ~~P~P~gVeG~W~---D~NGivSsf~ 58 (160)
++|.+.+.+|+|. |.+|+..-|+
T Consensus 13 v~p~~~~~~g~W~v~~~~~g~~A~~~ 38 (58)
T 2v3a_A 13 VSPPPRGMDGQWLVEGSGTDLKVLCR 38 (58)
T ss_dssp EECCCTTCCCEEEEEEETTEEEEEEE
T ss_pred EEECCCCCCCEEEECCCCCEEEEEEE
T ss_conf 98056656815886178864999999
No 5
>>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} (A:1-271,A:459-500)
Probab=18.97 E-value=61 Score=13.51 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=27.8
Q ss_pred HCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEECCCCCCCEEEE
Q ss_conf 057776566533376765620257268981446860878998425777746654
Q gi|254780199|r 24 CSALSVVVDSSELLPEPMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLAT 77 (160)
Q Consensus 24 c~~~~~~~~~~~~~P~P~gVeG~W~D~NGivSsf~~~G~F~TrstDGTn~~LA~ 77 (160)
++..+-.-..+.+...+.=|+|+|++... +..|+.+.+- |+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~I~G~~~~~~~-------~~~~~v~nP~-tg~~i~~ 50 (313)
T 1o04_A 5 TQAVPAPNQQPEVFCNQIFINNEWHDAVS-------RKTFPTVNPS-TGEVICQ 50 (313)
T ss_dssp --CCCCCCSSCCCCCCSEEETTEEECCTT-------CCEEEEEETT-TTEEEEE
T ss_pred CCCCCCCCCCCCCCCCCEEECCEECCCCC-------CCEEEEECCC-CCCEEEE
T ss_conf 56689999997512477078998527999-------9989756799-8887789
No 6
>>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein structure initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis H37RV} (A:1-257,A:447-495)
Probab=17.15 E-value=67 Score=13.25 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=18.5
Q ss_pred CCCCEEEEECCCCEEEEEEECCEEEEECCCCCCCEEEE
Q ss_conf 65620257268981446860878998425777746654
Q gi|254780199|r 40 PMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLAT 77 (160)
Q Consensus 40 P~gVeG~W~D~NGivSsf~~~G~F~TrstDGTn~~LA~ 77 (160)
+.=|.|+|++..+ +..|+.+.+. |+++++.
T Consensus 10 ~~~I~G~~v~~~~-------g~~~~v~~P~-tg~~i~~ 39 (306)
T 3b4w_A 10 KLFIGGKWTKPST-------SDVIEVRCPA-TGEYVGK 39 (306)
T ss_dssp SEEETTEEECCSS-------CCEEEEECTT-TCCEEEE
T ss_pred CEEECCEEECCCC-------CCEEEEECCC-CCCEEEE
T ss_conf 4569987406999-------9989802899-9888999
No 7
>>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics lyase; 2.00A {Escherichia coli} (A:1-183,A:326-379)
Probab=16.46 E-value=40 Score=14.65 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=11.5
Q ss_pred CCCCEEEEECCCCEEEEEE-ECCEEEE
Q ss_conf 6562025726898144686-0878998
Q gi|254780199|r 40 PMDITGYWEDDNGILSYFQ-KDGKFKT 65 (160)
Q Consensus 40 P~gVeG~W~D~NGivSsf~-~~G~F~T 65 (160)
|++..-.|.|++++.-+|. -.|-|+|
T Consensus 185 p~~l~~~~~~~~~l~l~F~Lp~g~~AT 211 (237)
T 1szw_A 185 PQQLSWNWWDDVTVEIRFWLPAGSFAT 211 (237)
T ss_dssp CEEEEEEEEETTEEEEEEEEETTCCHH
T ss_pred CCCCEEEECCCCEEEEEEECCCHHHHH
T ss_conf 337769974798599999818632999
No 8
>>1u5x_A Tumor necrosis factor ligand superfamily member 13; TNFSF, cytokine, jelly-roll, trimer, hormone/growth factor complex; 1.80A {Mus musculus} (A:)
Probab=15.85 E-value=73 Score=13.05 Aligned_cols=87 Identities=7% Similarity=-0.043 Sum_probs=59.5
Q ss_pred EEEEECCCCEEEEE-EECCEEEEECCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCEEEEEEEECCCE---EEEECCC
Q ss_conf 02572689814468-6087899842577774665446885168579999972003883058999606343---6676067
Q gi|254780199|r 44 TGYWEDDNGILSYF-QKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKIQCQFLDSNK---LNCLAKD 119 (160)
Q Consensus 44 eG~W~D~NGivSsf-~~~G~F~TrstDGTn~~LA~GTY~~~~~~~VEIn~tSlvR~T~skVnC~L~spsQ---LnCTS~s 119 (160)
--.|....|....| .++|.. ++..+|.=-+-++=+|.......-..-+.....+......|.-+-+.. -.++...
T Consensus 25 ~~~W~~~~~~~~~~~~~~g~L-~V~~~G~Y~VYsQV~f~~~~~~~~~~v~~~~~~~~~~ll~~~~t~~~~~~~~~~t~~~ 103 (140)
T 1u5x_A 25 EVMWQPVLRRGRGLEAQGDIV-RVWDTGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYS 103 (140)
T ss_dssp EEEEEEEEEESSSEEEETTEE-EECSCEEEEEEEEEEECCSSSCBCCEEEEECSSCEEEEEECCBCCCCC---CCEEEEE
T ss_pred EEECCHHHCCCCCEEEECCEE-EECCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHEEECCCCCCCCCCCEEEEE
T ss_conf 686500324245548709989-9824649999999999789887748999953789717747762268899985106878
Q ss_pred CCEEEEEEEEEE
Q ss_conf 987999973321
Q gi|254780199|r 120 QKQFYLRRTHLT 131 (160)
Q Consensus 120 G~QF~L~Rt~~~ 131 (160)
|.-|.|++-.--
T Consensus 104 gGv~~L~~gd~i 115 (140)
T 1u5x_A 104 AGVFHLHQGDII 115 (140)
T ss_dssp EEEEEECTTCEE
T ss_pred EEEEEECCCCEE
T ss_conf 347993799999
No 9
>>2zum_A 458AA long hypothetical endo-1,4-beta-glucanase; TIM barrel, hydrolase; 1.95A {Pyrococcus horikoshii} PDB: 2zun_A* (A:)
Probab=15.61 E-value=52 Score=13.94 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=28.8
Q ss_pred CCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCEEEEEC-CCCEE
Q ss_conf 97503551256899999998764057776566533------37676562025726-89814
Q gi|254780199|r 1 MQARCFLSLSFLFPLVAAIAVVSCSALSVVVDSSE------LLPEPMDITGYWED-DNGIL 54 (160)
Q Consensus 1 ~~ar~~lsl~~~~~Lv~alav~ac~~~~~~~~~~~------~~P~P~gVeG~W~D-~NGiv 54 (160)
|.-+++++|.++..|+..++..++...... ...| .+..+--|||.|.- .+|..
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~f~~g~a~sa~Q~eG~~~~~~~g~~ 60 (458)
T 2zum_A 1 MEGNTILKIVLICTILAGLFGQVVPVYAEN-TTYQTPTGIYYEVRGDTIYMINVTSGEETP 60 (458)
T ss_dssp ---------------------------------CCCSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 997445899999999999876211032455-434577776404568867733665677771
No 10
>>3emi_A HIA (adhesin); non-adhesive domain, trimeric autotransporter, cell adhesion; 1.80A {Haemophilus influenzae} (A:1-89)
Probab=15.23 E-value=64 Score=13.36 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=9.7
Q ss_pred CCEEEEECCCCCC
Q ss_conf 8789984257777
Q gi|254780199|r 60 DGKFKTISTDGSS 72 (160)
Q Consensus 60 ~G~F~TrstDGTn 72 (160)
+|.|+|+++ |||
T Consensus 78 ~g~feTV~S-GTn 89 (89)
T 3emi_A 78 NGDFATVAS-GTN 89 (89)
T ss_dssp EEEEEEEET-TCC
T ss_pred CCCEEEEEC-CCE
T ss_conf 774678734-634
Done!