Query gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs 20 out of 22
Neff 2.5
Searched_HMMs 13730
Date Mon May 23 12:51:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780199.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhca3 d.87.1.1 (A:290-351) N 33.7 6.1 0.00045 17.2 0.9 16 41-56 26-41 (62)
2 d1sgva1 b.122.1.1 (A:236-292) 29.3 11 0.00078 15.7 1.5 26 44-77 16-41 (57)
3 d1cb8a3 b.30.5.2 (A:336-599) C 15.2 22 0.0016 13.8 0.8 14 75-88 122-135 (264)
4 d2igda_ d.15.7.1 (A:) Immunogl 14.8 22 0.0016 13.8 0.7 10 40-49 41-50 (61)
5 d1cr5a2 d.31.1.1 (A:108-210) C 14.5 32 0.0023 12.8 3.3 82 78-160 2-101 (103)
6 d4htci_ g.3.15.2 (I:) Hirudin 12.4 27 0.002 13.3 0.5 21 129-149 43-63 (65)
7 d1mhxa_ d.15.7.1 (A:) Immunogl 12.1 29 0.0021 13.1 0.6 10 40-49 45-54 (65)
8 d3er7a1 d.17.4.24 (A:5-122) Un 9.2 48 0.0035 11.8 2.5 37 113-149 82-118 (118)
9 d1rwha3 b.30.5.2 (A:373-644) C 8.9 49 0.0036 11.7 0.9 18 73-90 125-142 (272)
10 d2j88h1 b.1.1.2 (H:113-180) Im 8.7 50 0.0036 11.7 1.9 33 40-84 34-66 (68)
No 1
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=33.69 E-value=6.1 Score=17.21 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=11.4
Q ss_pred CCCEEEEECCCCEEEE
Q ss_conf 5620257268981446
Q gi|254780199|r 41 MDITGYWEDDNGILSY 56 (160)
Q Consensus 41 ~gVeG~W~D~NGivSs 56 (160)
.+=||+|+|.|--+-|
T Consensus 26 ~~g~G~Wid~~tK~Fy 41 (62)
T d1xhca3 26 TKGEGKWIEDNTKVFY 41 (62)
T ss_dssp CSSCEEEEETTEEEEC
T ss_pred CCCCCEEECCCCEEEE
T ss_conf 0676112021132666
No 2
>d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=29.30 E-value=11 Score=15.71 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEEECCCCEEEEEEECCEEEEECCCCCCCEEEE
Q ss_conf 0257268981446860878998425777746654
Q gi|254780199|r 44 TGYWEDDNGILSYFQKDGKFKTISTDGSSSVLAT 77 (160)
Q Consensus 44 eG~W~D~NGivSsf~~~G~F~TrstDGTn~~LA~ 77 (160)
-|+|++++|+ .|.++..++||. ++|-
T Consensus 16 ~Gr~L~~~g~------~G~~Aa~~PdG~--~iAL 41 (57)
T d1sgva1 16 NGRSLPAVGI------DGVYAACDADGR--VIAL 41 (57)
T ss_dssp TTCCCBCCCC------CSCEEEECTTSC--EEEE
T ss_pred CCCCCCCCCC------CCCEEEECCCCC--EEEE
T ss_conf 6886586789------877799999997--9999
No 3
>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=15.20 E-value=22 Score=13.78 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=5.7
Q ss_pred EEEEEEEEECCCEE
Q ss_conf 65446885168579
Q gi|254780199|r 75 LATGSYHVKINQDV 88 (160)
Q Consensus 75 LA~GTY~~~~~~~V 88 (160)
-|--+|-+.....|
T Consensus 122 ~AkKSwF~~dd~iV 135 (264)
T d1cb8a3 122 QAKKAWFFFDKEIV 135 (264)
T ss_dssp EEEEEEEECSSCEE
T ss_pred EEEEEEEEECCEEE
T ss_conf 79999999899999
No 4
>d2igda_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different constituent domains {Streptococcus sp., group G [TaxId: 1306]}
Probab=14.81 E-value=22 Score=13.80 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=7.5
Q ss_pred CCCCEEEEEC
Q ss_conf 6562025726
Q gi|254780199|r 40 PMDITGYWED 49 (160)
Q Consensus 40 P~gVeG~W~D 49 (160)
..||+|.|.-
T Consensus 41 ~ngVdG~Wty 50 (61)
T d2igda_ 41 DNGVDGVWTY 50 (61)
T ss_dssp HTTCCCEEEE
T ss_pred CCCCCCEEEE
T ss_conf 4698746873
No 5
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=14.50 E-value=32 Score=12.83 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=48.2
Q ss_pred EEEEEECCCEEEEEEEECCCCCCEEEE-------------EEEECCCEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHH
Q ss_conf 468851685799999720038830589-------------9960634366760679879999733210777786001543
Q gi|254780199|r 78 GSYHVKINQDVEIKLTSLIRNTSGKIQ-------------CQFLDSNKLNCLAKDQKQFYLRRTHLTELPSSKPQDDVAE 144 (160)
Q Consensus 78 GTY~~~~~~~VEIn~tSlvR~T~skVn-------------C~L~spsQLnCTS~sG~QF~L~Rt~~~~~~~~~~~~~~~~ 144 (160)
|-+.|++.=.+||.+.+--+.++..++ -..-+|.|..--.-.|..|.|+=..+.-+--+-. +..++
T Consensus 2 g~~~yLgsi~iEidF~~kkk~~~~p~D~Dela~~F~~~F~~Q~ft~gQ~l~f~f~~~~l~l~Vk~v~~~Dl~~~-~~~~~ 80 (103)
T d1cr5a2 2 GKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFSPTQYLIMEFQGHFFDLKIRNVQAIDLGDI-EPTSA 80 (103)
T ss_dssp TTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCEECTTCEEEEEETTEEEEEEEEEEEEECTTSS-SCSSC
T ss_pred CCCEEEEEEEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEEEEEECCCCC-CCCCC
T ss_conf 87317999999998123277888860689999999998657788998699999789489999999998745214-67766
Q ss_pred CCCCCC-----CCCCEEEEEC
Q ss_conf 777888-----8740378879
Q gi|254780199|r 145 IPEDPT-----TPSTSIIFYK 160 (160)
Q Consensus 145 ~~~~~~-----~~~~~~~~~~ 160 (160)
.+.++. ++.|.|.|||
T Consensus 81 ~~~~~~~~GiL~~~T~V~F~K 101 (103)
T d1cr5a2 81 VATGIETKGILTKQTQINFFK 101 (103)
T ss_dssp CBCSTTCCEECCTTCEEEEEE
T ss_pred CCCCCCCCEEEECCCEEEEEE
T ss_conf 666763213890685799982
No 6
>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=12.37 E-value=27 Score=13.28 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=16.6
Q ss_pred EEECCCCCCCCHHHHHCCCCC
Q ss_conf 321077778600154377788
Q gi|254780199|r 129 HLTELPSSKPQDDVAEIPEDP 149 (160)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~ 149 (160)
.-|.-|.|.-+.|..||||+-
T Consensus 43 EGTpKpqs~~~gDFeeIPeey 63 (65)
T d4htci_ 43 EGTPKPESHNNGDFEEIPEEY 63 (65)
T ss_dssp CCEECCCCCCCCCCCCCCGGG
T ss_pred CCCCCCCCCCCCCCCCCCHHH
T ss_conf 787587656887755285776
No 7
>d1mhxa_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different constituent domains {Streptococcus sp., group G [TaxId: 1306]}
Probab=12.06 E-value=29 Score=13.08 Aligned_cols=10 Identities=20% Similarity=0.518 Sum_probs=7.5
Q ss_pred CCCCEEEEEC
Q ss_conf 6562025726
Q gi|254780199|r 40 PMDITGYWED 49 (160)
Q Consensus 40 P~gVeG~W~D 49 (160)
..||+|.|.-
T Consensus 45 ~ngVdG~Wty 54 (65)
T d1mhxa_ 45 DNGVDGEWTY 54 (65)
T ss_dssp HTTCCSEEEE
T ss_pred CCCCCCEEEE
T ss_conf 4799856773
No 8
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=9.19 E-value=48 Score=11.78 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=23.5
Q ss_pred EEEECCCCCEEEEEEEEEECCCCCCCCHHHHHCCCCC
Q ss_conf 6676067987999973321077778600154377788
Q gi|254780199|r 113 LNCLAKDQKQFYLRRTHLTELPSSKPQDDVAEIPEDP 149 (160)
Q Consensus 113 LnCTS~sG~QF~L~Rt~~~~~~~~~~~~~~~~~~~~~ 149 (160)
..|-.++|.-|.+.-|...+|-+.-.---.+.+|.||
T Consensus 82 V~gk~~dG~~~~~~G~DiA~l~~~GKI~yL~nvp~~~ 118 (118)
T d3er7a1 82 VCGKSADGSVFTQDGTDIARLNADGKIVYLANVPDDT 118 (118)
T ss_dssp EEEEETTSCEEEEEEEEEEEECTTSCEEEEEEEECCC
T ss_pred EEEEECCCCEEEECCCCHHHHCCCCCEEEEECCCCCC
T ss_conf 7865068848974374544405788687302389998
No 9
>d1rwha3 b.30.5.2 (A:373-644) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]}
Probab=8.93 E-value=49 Score=11.71 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=11.0
Q ss_pred CEEEEEEEEEECCCEEEE
Q ss_conf 466544688516857999
Q gi|254780199|r 73 SVLATGSYHVKINQDVEI 90 (160)
Q Consensus 73 ~~LA~GTY~~~~~~~VEI 90 (160)
.+-|.-+|-+.....|-+
T Consensus 125 ~l~A~KSwFf~dd~iV~L 142 (272)
T d1rwha3 125 GLTARKSWFVSGDVTVCL 142 (272)
T ss_dssp CCEEEEEEEECSSCEEEE
T ss_pred CCEEEEEEEEECCEEEEE
T ss_conf 758999999989999999
No 10
>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.73 E-value=50 Score=11.66 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=19.4
Q ss_pred CCCCEEEEECCCCEEEEEEECCEEEEECCCCCCCEEEEEEEEEEC
Q ss_conf 656202572689814468608789984257777466544688516
Q gi|254780199|r 40 PMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSYHVKI 84 (160)
Q Consensus 40 P~gVeG~W~D~NGivSsf~~~G~F~TrstDGTn~~LA~GTY~~~~ 84 (160)
|..|.=.| +.|++-+ | +.+ +...+..|+|...+
T Consensus 34 P~~i~v~W-~~~~~~~-----~-~~t-----~p~v~~~~~Ys~sS 66 (68)
T d2j88h1 34 PEPVTVTW-NSGSLSS-----G-VHT-----FPAVLQSDLYTLSS 66 (68)
T ss_dssp SSCCCCCS-CC-------------CB-----CCCEEETTEEEEEB
T ss_pred CCCCEEEE-CCCCCCC-----C-EEE-----CCCEEECCEEEEEE
T ss_conf 88749997-8898479-----9-899-----97868498299999
Done!