RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein
[Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)



>gnl|CDD|185532 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase;
           Provisional.
          Length = 333

 Score = 29.7 bits (67), Expect = 0.39
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 23/89 (25%)

Query: 55  SYFQKDGKFK---TISTDGSS---SVLATGSYHVKINQDVEIKLTSLIRN---------- 98
           S  +KD KFK    I  DGS      +A   +   IN +++I+L SL+RN          
Sbjct: 98  SRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIG 157

Query: 99  ---TSGKIQCQFLDSN---KLNCLAKDQK 121
              + GK     +D++    ++   K + 
Sbjct: 158 MLASRGKY-ILMVDADGATDIDDFDKLED 185


>gnl|CDD|177524 PHA03083, PHA03083, poxvirus myristoylprotein; Provisional.
          Length = 334

 Score = 28.1 bits (63), Expect = 0.97
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 41  MDITGYWEDDNGILSYFQKDGK 62
            ++T YWED++G +S   K   
Sbjct: 91  FNLTHYWEDNDGKISDKYKPNA 112


>gnl|CDD|180100 PRK05463, PRK05463, hypothetical protein; Provisional.
          Length = 262

 Score = 27.5 bits (62), Expect = 1.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 35  ELLPEPMDITGYWEDD 50
           EL+ E  DIT  W DD
Sbjct: 94  ELVEEVTDITDLWRDD 109


>gnl|CDD|173171 PRK14708, PRK14708, flagellin; Provisional.
          Length = 888

 Score = 26.4 bits (58), Expect = 3.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 60  DGKFKTISTDGSSSVLATGSYHVKINQDV 88
           +GK  T +T G+++  + G+Y + ++Q +
Sbjct: 222 NGKTITFTTAGAATADSNGNYTIGLDQTL 250


>gnl|CDD|152201 pfam11765, Hyphal_reg_CWP, Hyphally regulated cell wall protein
           N-terminal.  The proteins in this family are all fungal
           and largely annotated as being hyphally regulated cell
           wall proteins, and several are listed as the enzyme
           EC:3.2.1.18. This enzyme is acetylneuraminyl hydrolase
           or exo-alpha-sialidase, that hydrolyses glycosidic
           linkages of terminal sialic acid residues in
           oligosaccharides, glycoproteins, glycolipids, colominic
           acid and synthetic substrates.
          Length = 332

 Score = 25.5 bits (56), Expect = 6.5
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 33  SSELLPEPMDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKL 92
           +S +LP  M IT     +NG+LS++Q            +S V++ G+    I  + +I L
Sbjct: 121 ASGVLPSTMSITAASWTNNGLLSFYQN---------QRTSGVVSLGTPLGTITNNGQICL 171


>gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit,
           proteobacterial.  Operationally, topoisomerase IV is a
           type II topoisomerase required for the decatenation of
           chromosome segregation. Not every bacterium has both a
           topo II and a topo IV. The topo IV families of the
           Gram-positive bacteria and the Gram-negative bacteria
           appear not to represent a single clade among the type II
           topoisomerases, and are represented by separate models
           for this reason.
          Length = 735

 Score = 25.3 bits (55), Expect = 8.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 112 KLNCLAK-----DQKQFYL-RRTHLTELPSSKPQDDVAEIPEDPTT 151
           +LN L K     D  ++ L RR+ L E   +K   ++  IP++P T
Sbjct: 452 ELNQLVKKEIQADATKYGLARRSSLEEREEAKQVSEIDMIPKEPVT 497


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,467,714
Number of extensions: 137334
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 13
Length of query: 160
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,136,185
Effective search space: 306077690
Effective search space used: 306077690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)