RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str. psy62] (160 letters) >2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile} (A:129-199) Length = 71 Score = 28.7 bits (64), Expect = 0.35 Identities = 2/22 (9%), Positives = 7/22 (31%) Query: 44 TGYWEDDNGILSYFQKDGKFKT 65 G ++ +G + + Sbjct: 20 IGVFKGPDGFEYFAPANTDANN 41 Score = 25.2 bits (55), Expect = 3.9 Identities = 4/19 (21%), Positives = 8/19 (42%) Query: 47 WEDDNGILSYFQKDGKFKT 65 + + + YF + K T Sbjct: 53 FLYLHDNIYYFGNNSKAAT 71 >2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter pylori} (A:) Length = 457 Score = 28.0 bits (62), Expect = 0.60 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 18/70 (25%) Query: 41 MDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVL-------ATGSYH--VKIN--QDVE 89 + I G + ++ G ++Y + GK T++ +++++ ATG Y +KIN QD Sbjct: 275 LTIQGDFINNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQD-- 332 Query: 90 IKLTSLIRNT 99 LI+NT Sbjct: 333 -----LIKNT 337 >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, signal, transferase, phosphorylation, transmembrane, tyrosine- protein kinase; HET: NAG; 2.50A {Homo sapiens} (A:1-269) Length = 269 Score = 27.2 bits (60), Expect = 1.2 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 8/74 (10%) Query: 46 YWEDDNGILSYFQKD--GKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKI 103 Y E D + FQK K TI+ D + + HVK+N ++ S+ T Sbjct: 128 YAESDLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLN----VEERSVGPLTRKGF 183 Query: 104 QCQFLDSNKLNCLA 117 F D C+A Sbjct: 184 YLAFQDIG--ACVA 195 >2f6e_A Toxin A; beta solenoid, C-terminal repetitive domain, crops; 1.85A {Clostridium difficile} (A:80-127) Length = 48 Score = 26.6 bits (59), Expect = 1.5 Identities = 5/22 (22%), Positives = 10/22 (45%) Query: 44 TGYWEDDNGILSYFQKDGKFKT 65 G + +G++ +F DG Sbjct: 24 AGGLFEIDGVIYFFGVDGVKAP 45 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (A:550-614) Length = 65 Score = 26.3 bits (57), Expect = 2.1 Identities = 4/8 (50%), Positives = 6/8 (75%), Gaps = 2/8 (25%) Query: 85 NQDVEIKL 92 N VE+K+ Sbjct: 1 N--VEVKI 6 >2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} (A:) Length = 120 Score = 26.1 bits (57), Expect = 2.6 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 15 LVAAIAVVSCSALSVVVDSSELLPEPMDITGY--WEDDNGILSYFQKDGKFKTISTDGSS 72 L+ V S + + + GY +ED I F+K G F T + Sbjct: 48 LLDTSGVAKVIEKSPIAEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 107 Query: 73 S 73 + Sbjct: 108 N 108 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (B:550-611) Length = 62 Score = 25.9 bits (56), Expect = 2.7 Identities = 4/8 (50%), Positives = 6/8 (75%), Gaps = 2/8 (25%) Query: 85 NQDVEIKL 92 N VE+K+ Sbjct: 1 N--VEVKI 6 >2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A {Streptococcus pneumoniae} PDB: 2v04_A 2vyu_A (A:24-86) Length = 63 Score = 25.9 bits (57), Expect = 3.0 Identities = 6/52 (11%), Positives = 11/52 (21%), Gaps = 13/52 (25%) Query: 44 TGYWEDDNGILSYFQKDGKFKT----ISTDG------SSSVLATGSYHVKIN 85 W +G YF G+ + G + + Sbjct: 1 IY-WHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVN--EIGLQ 49 >1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} (A:1-53) Length = 53 Score = 25.8 bits (57), Expect = 3.2 Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%) Query: 44 TGYWEDDNGILSYFQKDGKFKT 65 TG W+ YF ++G KT Sbjct: 16 TG-WKKIADKWYYFNEEGAXKT 36 >2wfo_A Glycoprotein 1, MACV-GP1; arenavirus, NEW world arenavirus, hemorrhagic fever virus, envelope protein, junin, guanarito, sabia, chapare, virion; HET: NAG; 1.73A {Machupo virus} (A:) Length = 182 Score = 25.5 bits (56), Expect = 3.3 Identities = 7/34 (20%), Positives = 12/34 (35%) Query: 95 LIRNTSGKIQCQFLDSNKLNCLAKDQKQFYLRRT 128 T+ +CQF N L+ L + + Sbjct: 141 EYCGTNYLSKCQFDHVNTLHFLVRSKTHLNFGTG 174 >3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosylation, glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi} (A:1-9,A:141-230,A:428-674) Length = 346 Score = 25.6 bits (56), Expect = 3.3 Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 21/100 (21%) Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSY---HVKIN------QDVEIKLTSLI 96 Y+ +D G+ +Y+ L +V ++ + + T+ Sbjct: 74 YFTEDIGLNAYYFFFHIHLPFWWTAEQEKLHFVGVKVNNVVVDKLVTFFEYYDFDATNT- 132 Query: 97 RNTSGKIQCQFLDSNKLNCLAKDQKQFYLRRTHLTELPSS 136 + + K +R+ L P + Sbjct: 133 -----------VFLTEEELKTKYPHNLKVRQPRLNHQPFN 161 >3czt_X Protein S100-B; EF-hand,calcium, zinc, copper, cytoplasm, metal- binding, nucleus, metal binding protein; 1.40A {Homo sapiens} PDB: 2h61_A 3d0y_A* 3d10_A* 1mq1_A 1uwo_A 2pru_A 1b4c_A 1dt7_A 1mwn_A 1qlk_A 1sym_A 1xyd_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 1psb_A ... (X:) Length = 92 Score = 25.6 bits (56), Expect = 3.9 Identities = 7/76 (9%), Positives = 23/76 (30%), Gaps = 7/76 (9%) Query: 56 YFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIR----NTSGKIQCQ-FLDS 110 Y ++G + ++ H + + ++ + G+ Q F+ Sbjct: 18 YSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDNDGDGECDFQEFM-- 75 Query: 111 NKLNCLAKDQKQFYLR 126 + + +F+ Sbjct: 76 AFVAMVTTACHEFFEH 91 >2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} (B:) Length = 52 Score = 25.1 bits (55), Expect = 4.3 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 27 LSVVVDSSELLPEPMDI-----TGYWEDDNGILS-YFQKDGKFKTIS 67 LS VV +++PE + I TG + +LS F + + S Sbjct: 6 LSDVVSLKDVVPEWVRIGFSATTGAEYAAHEVLSWSFHSELSGTSSS 52 >2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} (A:1-180) Length = 180 Score = 25.1 bits (55), Expect = 4.7 Identities = 7/22 (31%), Positives = 9/22 (40%) Query: 98 NTSGKIQCQFLDSNKLNCLAKD 119 N G I+C F + KD Sbjct: 51 NNGGVIECSFPYNKSELTGVKD 72 >2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} (A:1-175) Length = 175 Score = 25.2 bits (55), Expect = 4.9 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 98 NTSGKIQCQFLDSNKLNCLAKD 119 N +G ++C F + A+D Sbjct: 50 NDNGNVECSFPYNKVELTGARD 71 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} (A:1-94,A:422-459) Length = 132 Score = 24.4 bits (53), Expect = 6.6 Identities = 1/19 (5%), Positives = 5/19 (26%) Query: 140 DDVAEIPEDPTTPSTSIIF 158 + + ++I Sbjct: 25 RRWDSACQKLPDANLALIS 43 >2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} (A:) Length = 268 Score = 24.2 bits (52), Expect = 7.9 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110 IN+ +++ LT + + SG CQF+D Sbjct: 24 INESLQLNLTKIEQLCSGAAYCQFMDM 50 >2rb6_A Uncharacterized protein; X-RAY, NESG, Q8EI81_sheon, structural genomics, PSI-2, protein structure initiative; 2.50A {Shewanella oneidensis mr-1} (A:) Length = 61 Score = 24.3 bits (53), Expect = 8.6 Identities = 5/27 (18%), Positives = 12/27 (44%) Query: 48 EDDNGILSYFQKDGKFKTISTDGSSSV 74 + G Y+ +DG+ I + + + Sbjct: 24 DKTTGXYLYYDEDGREVXIKQEDVTQI 50 >1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase, hydrolase; 1.7A {Aspergillus fumigatus} (A:1-297,A:363-433) Length = 368 Score = 24.1 bits (51), Expect = 8.6 Identities = 5/49 (10%), Positives = 13/49 (26%) Query: 1 MQARCFLSLSFLFPLVAAIAVVSCSALSVVVDSSELLPEPMDITGYWED 49 + ++ L + A V + + D Y+ + Sbjct: 3 FATSTIVKVALLLSSLCVDAAVMWNRDTSSTDLEARASSGYRSVVYFVN 51 >1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 159 Score = 24.1 bits (52), Expect = 9.5 Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110 +N + + T + + SG CQF+D Sbjct: 31 VNDSLHLNYTKIEQLCSGAAYCQFMDM 57 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.132 0.381 Gapped Lambda K H 0.267 0.0596 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,147,138 Number of extensions: 44850 Number of successful extensions: 172 Number of sequences better than 10.0: 1 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 26 Length of query: 160 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 78 Effective length of database: 2,184,039 Effective search space: 170355042 Effective search space used: 170355042 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (23.7 bits)