RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein
[Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A
{Clostridium difficile} (A:129-199)
Length = 71
Score = 28.7 bits (64), Expect = 0.35
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 44 TGYWEDDNGILSYFQKDGKFKT 65
G ++ +G + +
Sbjct: 20 IGVFKGPDGFEYFAPANTDANN 41
Score = 25.2 bits (55), Expect = 3.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 47 WEDDNGILSYFQKDGKFKT 65
+ + + YF + K T
Sbjct: 53 FLYLHDNIYYFGNNSKAAT 71
>2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter
pylori} (A:)
Length = 457
Score = 28.0 bits (62), Expect = 0.60
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 18/70 (25%)
Query: 41 MDITGYWEDDNGILSYFQKDGKFKTISTDGSSSVL-------ATGSYH--VKIN--QDVE 89
+ I G + ++ G ++Y + GK T++ +++++ ATG Y +KIN QD
Sbjct: 275 LTIQGDFINNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQD-- 332
Query: 90 IKLTSLIRNT 99
LI+NT
Sbjct: 333 -----LIKNT 337
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding,
signal, transferase, phosphorylation, transmembrane,
tyrosine- protein kinase; HET: NAG; 2.50A {Homo sapiens}
(A:1-269)
Length = 269
Score = 27.2 bits (60), Expect = 1.2
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 46 YWEDDNGILSYFQKD--GKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKI 103
Y E D + FQK K TI+ D + + HVK+N ++ S+ T
Sbjct: 128 YAESDLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLN----VEERSVGPLTRKGF 183
Query: 104 QCQFLDSNKLNCLA 117
F D C+A
Sbjct: 184 YLAFQDIG--ACVA 195
>2f6e_A Toxin A; beta solenoid, C-terminal repetitive domain,
crops; 1.85A {Clostridium difficile} (A:80-127)
Length = 48
Score = 26.6 bits (59), Expect = 1.5
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 44 TGYWEDDNGILSYFQKDGKFKT 65
G + +G++ +F DG
Sbjct: 24 AGGLFEIDGVIYFFGVDGVKAP 45
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
synthetase class II, ligase; 3.23A {Methanococcus
maripaludis S2} (A:550-614)
Length = 65
Score = 26.3 bits (57), Expect = 2.1
Identities = 4/8 (50%), Positives = 6/8 (75%), Gaps = 2/8 (25%)
Query: 85 NQDVEIKL 92
N VE+K+
Sbjct: 1 N--VEVKI 6
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein,
structural genomics, PSI, protein structure initiative;
NMR {Saccharomyces cerevisiae} (A:)
Length = 120
Score = 26.1 bits (57), Expect = 2.6
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 15 LVAAIAVVSCSALSVVVDSSELLPEPMDITGY--WEDDNGILSYFQKDGKFKTISTDGSS 72
L+ V S + + + GY +ED I F+K G F T +
Sbjct: 48 LLDTSGVAKVIEKSPIAEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 107
Query: 73 S 73
+
Sbjct: 108 N 108
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA
synthetase class II, ligase; 3.23A {Methanococcus
maripaludis S2} (B:550-611)
Length = 62
Score = 25.9 bits (56), Expect = 2.7
Identities = 4/8 (50%), Positives = 6/8 (75%), Gaps = 2/8 (25%)
Query: 85 NQDVEIKL 92
N VE+K+
Sbjct: 1 N--VEVKI 6
>2v05_A Choline binding protein F; CBPF, lipid-binding-protein;
1.67A {Streptococcus pneumoniae} PDB: 2v04_A 2vyu_A
(A:24-86)
Length = 63
Score = 25.9 bits (57), Expect = 3.0
Identities = 6/52 (11%), Positives = 11/52 (21%), Gaps = 13/52 (25%)
Query: 44 TGYWEDDNGILSYFQKDGKFKT----ISTDG------SSSVLATGSYHVKIN 85
W +G YF G+ + G + +
Sbjct: 1 IY-WHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVN--EIGLQ 49
>1h8g_A Major autolysin; choline-binding domain, cell WALL
attachment; 2.4A {Streptococcus pneumoniae} (A:1-53)
Length = 53
Score = 25.8 bits (57), Expect = 3.2
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 44 TGYWEDDNGILSYFQKDGKFKT 65
TG W+ YF ++G KT
Sbjct: 16 TG-WKKIADKWYYFNEEGAXKT 36
>2wfo_A Glycoprotein 1, MACV-GP1; arenavirus, NEW world arenavirus,
hemorrhagic fever virus, envelope protein, junin,
guanarito, sabia, chapare, virion; HET: NAG; 1.73A
{Machupo virus} (A:)
Length = 182
Score = 25.5 bits (56), Expect = 3.3
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 95 LIRNTSGKIQCQFLDSNKLNCLAKDQKQFYLRRT 128
T+ +CQF N L+ L + +
Sbjct: 141 EYCGTNYLSKCQFDHVNTLHFLVRSKTHLNFGTG 174
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability,
glycosylation, glycoprotein, secreted, storage protein,
oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea
pernyi} (A:1-9,A:141-230,A:428-674)
Length = 346
Score = 25.6 bits (56), Expect = 3.3
Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 21/100 (21%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSY---HVKIN------QDVEIKLTSLI 96
Y+ +D G+ +Y+ L +V ++ + + T+
Sbjct: 74 YFTEDIGLNAYYFFFHIHLPFWWTAEQEKLHFVGVKVNNVVVDKLVTFFEYYDFDATNT- 132
Query: 97 RNTSGKIQCQFLDSNKLNCLAKDQKQFYLRRTHLTELPSS 136
+ + K +R+ L P +
Sbjct: 133 -----------VFLTEEELKTKYPHNLKVRQPRLNHQPFN 161
>3czt_X Protein S100-B; EF-hand,calcium, zinc, copper, cytoplasm,
metal- binding, nucleus, metal binding protein; 1.40A
{Homo sapiens} PDB: 2h61_A 3d0y_A* 3d10_A* 1mq1_A 1uwo_A
2pru_A 1b4c_A 1dt7_A 1mwn_A 1qlk_A 1sym_A 1xyd_A 1cfp_A
3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 1psb_A
... (X:)
Length = 92
Score = 25.6 bits (56), Expect = 3.9
Identities = 7/76 (9%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 56 YFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIR----NTSGKIQCQ-FLDS 110
Y ++G + ++ H + + ++ + G+ Q F+
Sbjct: 18 YSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDNDGDGECDFQEFM-- 75
Query: 111 NKLNCLAKDQKQFYLR 126
+ + +F+
Sbjct: 76 AFVAMVTTACHEFFEH 91
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} (B:)
Length = 52
Score = 25.1 bits (55), Expect = 4.3
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 27 LSVVVDSSELLPEPMDI-----TGYWEDDNGILS-YFQKDGKFKTIS 67
LS VV +++PE + I TG + +LS F + + S
Sbjct: 6 LSDVVSLKDVVPEWVRIGFSATTGAEYAAHEVLSWSFHSELSGTSSS 52
>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum}
(A:1-180)
Length = 180
Score = 25.1 bits (55), Expect = 4.7
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 98 NTSGKIQCQFLDSNKLNCLAKD 119
N G I+C F + KD
Sbjct: 51 NNGGVIECSFPYNKSELTGVKD 72
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum}
(A:1-175)
Length = 175
Score = 25.2 bits (55), Expect = 4.9
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 98 NTSGKIQCQFLDSNKLNCLAKD 119
N +G ++C F + A+D
Sbjct: 50 NDNGNVECSFPYNKVELTGARD 71
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc,
PSI-II, structural genomics, protein structure
initiative; 2.07A {Escherichia coli K12}
(A:1-94,A:422-459)
Length = 132
Score = 24.4 bits (53), Expect = 6.6
Identities = 1/19 (5%), Positives = 5/19 (26%)
Query: 140 DDVAEIPEDPTTPSTSIIF 158
+ + ++I
Sbjct: 25 RRWDSACQKLPDANLALIS 43
>2r8u_A Microtubule-associated protein RP/EB family member 1;
cytoskeleton, acetylation, cell cycle, cell division,
cytoplasm, mitosis, phosphorylation; 1.35A {Homo
sapiens} (A:)
Length = 268
Score = 24.2 bits (52), Expect = 7.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110
IN+ +++ LT + + SG CQF+D
Sbjct: 24 INESLQLNLTKIEQLCSGAAYCQFMDM 50
>2rb6_A Uncharacterized protein; X-RAY, NESG, Q8EI81_sheon,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Shewanella oneidensis mr-1} (A:)
Length = 61
Score = 24.3 bits (53), Expect = 8.6
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 48 EDDNGILSYFQKDGKFKTISTDGSSSV 74
+ G Y+ +DG+ I + + +
Sbjct: 24 DKTTGXYLYYDEDGREVXIKQEDVTQI 50
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin,
glycosidase, hydrolase; 1.7A {Aspergillus fumigatus}
(A:1-297,A:363-433)
Length = 368
Score = 24.1 bits (51), Expect = 8.6
Identities = 5/49 (10%), Positives = 13/49 (26%)
Query: 1 MQARCFLSLSFLFPLVAAIAVVSCSALSVVVDSSELLPEPMDITGYWED 49
+ ++ L + A V + + D Y+ +
Sbjct: 3 FATSTIVKVALLLSSLCVDAAVMWNRDTSSTDLEARASSGYRSVVYFVN 51
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family
member 3; CH domain, microtubule-binding, structural
genomics, NPPSFA; NMR {Homo sapiens} (A:)
Length = 159
Score = 24.1 bits (52), Expect = 9.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110
+N + + T + + SG CQF+D
Sbjct: 31 VNDSLHLNYTKIEQLCSGAAYCQFMDM 57
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,147,138
Number of extensions: 44850
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 26
Length of query: 160
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 78
Effective length of database: 2,184,039
Effective search space: 170355042
Effective search space used: 170355042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)