RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein
[Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.9 bits (80), Expect = 0.009
Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 59/170 (34%)
Query: 14 PLVAAIAVVSCSALSVVVDS----SEL-------LPEPMDITGYWEDDNGILSYFQKDGK 62
PL + + L V S S+L LPEP + G+ DD
Sbjct: 8 PLTLSHGSLEHV-LLVPTASFFIASQLQEQFNKILPEPTE--GFAADD------------ 52
Query: 63 FKTISTDGSSSVLATGSY--HV--KINQDVEIKLTSLIRNTSGKIQCQFLDSNKLNCLA- 117
+ ++ G + +V + + ++ + + +L+ N ++ LA
Sbjct: 53 ------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 118 -----------KDQK--QFYLRRTHLTELPSSKP---------QDDVAEI 145
K ++ + Y+ + + P K + A++
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Score = 33.0 bits (75), Expect = 0.034
Identities = 40/180 (22%), Positives = 59/180 (32%), Gaps = 77/180 (42%)
Query: 9 LSFLFPLVAAIAVVS-----CSAL--SVVVDS---SELLPEPMDITGYWEDDNGILSYFQ 58
++ LF I V ++L S++ DS +E +P PM LS
Sbjct: 300 ITVLF----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------------LS--- 340
Query: 59 KDGKFKTISTDGSSSVLATGSYHV-KINQD------VEIKLTSLI---RN--TSGKIQ-- 104
IS + + + +V K N VEI SL+ +N SG Q
Sbjct: 341 -------IS-NLTQEQVQD---YVNKTNSHLPAGKQVEI---SLVNGAKNLVVSGPPQSL 386
Query: 105 ---CQFLDSNKLNCLA---KDQKQ--FYLRRTHLTE--LPSSKP------QDDVAEIPED 148
L K A DQ + F R+ + LP + P I +D
Sbjct: 387 YGLNLTLRKAK----APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
>2v05_A Choline binding protein F; CBPF, lipid-binding-protein; 1.67A
{Streptococcus pneumoniae} PDB: 2v04_A 2vyu_A
Length = 311
Score = 30.0 bits (66), Expect = 0.22
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 45 GYWEDDNGILSYFQKDGKFKT--ISTDG------SSSVLATGSYHVKIN 85
G + D + Y+ KD DG + G +++I
Sbjct: 5 GRFVDKDNR-KYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIP 52
>2g7c_A Toxin A; linear B trisaccharide, protein-carbohydrate complex,
bacterial toxin; HET: GLA GAL NAG; 2.00A {Clostridium
difficile}
Length = 255
Score = 29.3 bits (64), Expect = 0.43
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 44 TGYWEDDNGILSYFQKDGKFKTIST----DG------SSSVLATGSY 80
TG W+ NG + YF D DG V A G Y
Sbjct: 209 TG-WQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPGIY 254
>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan,
beta-lactam insensitive transpeptidase, antibiotic
resistance, transferase; 2.40A {Enterococcus faecium}
SCOP: b.160.1.1 d.335.1.1 PDB: 2hkl_A
Length = 250
Score = 28.4 bits (63), Expect = 0.78
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 59 KDGKFKTISTDGSSSVLATGSYHVKINQDVEIK-LTSLIRN 98
D KFK+ T + G+Y I D E + L I
Sbjct: 65 NDTKFKS--TKRGEVTVPVGTYSWTIQTDSETEALKKAILA 103
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium
difficile}
Length = 332
Score = 28.2 bits (61), Expect = 0.83
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 44 TGYWEDDNGILSYFQKDGKFKT--ISTDG------SSSVLATGSYHVKIN 85
+ G + YF + K T + +G + +A +I+
Sbjct: 269 QNRFLHLLGKIYYFGNNSKAVTGWQTINGKVYYFMPDTAMAAAGGLFEID 318
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 27.9 bits (61), Expect = 1.0
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 26/136 (19%)
Query: 40 PMDITGYWEDDNGILSYFQKDGKFKT-----ISTDGSSSVLATGSYHVKIN------QDV 88
P GY+ ++ S DG F+T +G + +K D+
Sbjct: 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450
Query: 89 EIKLTSL--IRN---------TSGKIQCQFLDSNKLNCLAKDQKQFYLRRTHLTELPSSK 137
E L ++ + + ++ + L+ +
Sbjct: 451 ENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKA----GFAKWQ 506
Query: 138 PQDDVAEIPEDPTTPS 153
D E P T +
Sbjct: 507 LPDAYVFAEEIPRTSA 522
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus
pneumoniae R6}
Length = 94
Score = 27.8 bits (61), Expect = 1.3
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 47 WEDDNGILSYFQKDGKFKT--ISTDGSSSVL-ATGSYHVKINQDVEIKLTSLIRNTSGKI 103
W+ +NG+ ++ DG T + +GS L + GS +K+NQ ++ NTSG++
Sbjct: 18 WKQENGMWYFYNTDGSMATGWVQVNGSWYYLNSNGS--MKVNQWFQVGGKWYYVNTSGEL 75
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structural genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A*
Length = 246
Score = 27.1 bits (59), Expect = 1.8
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSV 74
Y + ++ ++ G S ++ +
Sbjct: 196 YKDVAKPVIELYKSRGVLHQFSGTETNKI 224
>2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter
pylori}
Length = 457
Score = 27.2 bits (60), Expect = 1.9
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 43 ITGYWEDDNGILSYFQKDGKFKTISTDGSSSVL-------ATGSYH--VKIN 85
I G + ++ G ++Y + GK T++ +++++ ATG Y +KIN
Sbjct: 277 IQGDFINNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKIN 328
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 26.9 bits (58), Expect = 2.5
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y+ +++Y++ + I+ +G+
Sbjct: 157 YYRASIPVIAYYETKTQLHKINAEGT 182
>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase,
ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A*
3adk_A
Length = 196
Score = 26.8 bits (58), Expect = 2.5
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y++ ++++++K G + ++ +GS
Sbjct: 154 YYKATEPVIAFYEKRGIVRKVNAEGS 179
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 26.4 bits (57), Expect = 2.7
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y E ++ Y++ G K + G+
Sbjct: 147 YREKTEPLVGYYEARGVLKRVDGLGT 172
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 26.4 bits (57), Expect = 2.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSV 74
Y + +L Y+QK G +T S ++ +
Sbjct: 176 YEDQTKPVLEYYQKKGVLETFSGTETNKI 204
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 26.4 bits (57), Expect = 3.0
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y E ++ Y++K G + I
Sbjct: 165 YREQTAPLIEYYKKKGILRIIDASKP 190
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 26.5 bits (57), Expect = 3.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y + I+ +++ GK K I S
Sbjct: 155 YLQSTKPIIDLYEEMGKVKKIDASKS 180
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel,
hydrolase, plasmid, protease, secreted, thiol protease,
virulence; 3.01A {Shigella flexneri}
Length = 400
Score = 26.2 bits (57), Expect = 3.7
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 53 ILSYFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTSGKIQCQFLDSNK 112
LS + DG+F + DG S L + + S+ KIQ L S +
Sbjct: 68 SLSQDKMDGEFAHANIDGISIRLC-----------LNKGICSVFYLDGDKIQSTQLSSKE 116
Query: 113 LNCLAKD--QKQFYLRRTHLTELPSSKPQDDVAEIPE 147
N L KQF L + H P S PE
Sbjct: 117 YNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPE 153
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 26.1 bits (56), Expect = 3.8
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+ E ++ YF+ K + D S
Sbjct: 162 FKETSMPVIEYFETKSKVVRVRCDRS 187
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 26.3 bits (57), Expect = 3.8
Identities = 2/26 (7%), Positives = 9/26 (34%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+ +L ++ + G ++
Sbjct: 175 NMKQTAPLLDFYDEKGYLVNVNGQQD 200
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A
{Saccharomyces cerevisiae}
Length = 127
Score = 26.3 bits (58), Expect = 3.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110
+N + + + +G CQ +DS
Sbjct: 19 LNGLLNLNYKKIEECGTGAAYCQIMDS 45
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase; HET: AP5;
1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1
PDB: 2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 26.0 bits (56), Expect = 4.0
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y I+ +++K G + +
Sbjct: 180 YHAQTEPIVDFYKKTGIWAGVDASQP 205
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 26.0 bits (56), Expect = 4.4
Identities = 2/26 (7%), Positives = 11/26 (42%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+ + ++ +++ G K ++
Sbjct: 180 FHKQTAPLVKFYEDLGILKRVNAKLP 205
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 26.0 bits (56), Expect = 4.7
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+ ++ ++ K K K I +
Sbjct: 152 FNVQTKLVIDHYNKFDKVKIIPANRD 177
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 25.6 bits (55), Expect = 5.0
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+ +L ++ + G K I
Sbjct: 175 NMKQTQPLLDFYSQKGVLKDIDGQQD 200
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein,
structural genomics, PSI, protein structure initiative;
NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Length = 120
Score = 25.7 bits (56), Expect = 5.4
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 15 LVAAIAVVSCSALSVVVDSSELLPEPMDITGY--WEDDNGILSYFQKDGKFKTISTDGSS 72
L+ V S + + + GY +ED I F+K G F T +
Sbjct: 48 LLDTSGVAKVIEKSPIAEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 107
Query: 73 S 73
+
Sbjct: 108 N 108
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton,
acetylation, cell cycle, cell division, cytoplasm,
mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP:
a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3gjo_A
1yib_A 1yig_A
Length = 268
Score = 25.3 bits (55), Expect = 6.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110
IN+ +++ LT + + SG CQF+D
Sbjct: 24 INESLQLNLTKIEQLCSGAAYCQFMDM 50
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 25.3 bits (54), Expect = 6.3
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y ++ Y+ K G I +
Sbjct: 191 YHTQTTPLVEYYSKRGIHSAIDASQT 216
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, ATP-binding, cytoplasm, hydrolase,
membrane; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 25.1 bits (54), Expect = 8.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 47 WEDDNGILSYFQK 59
WE+ N I YFQ+
Sbjct: 473 WEEMNAIQEYFQR 485
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin
homology domain, microtubule plus END, +TIP, protein
binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A
1ueg_A 3co1_A 1v5k_A
Length = 123
Score = 24.7 bits (54), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110
IN+ +++ LT + + SG CQF+D
Sbjct: 14 INESLQLNLTKIEQLCSGAAYCQFMDM 40
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3;
CH domain, microtubule-binding, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 159
Score = 24.8 bits (54), Expect = 10.0
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110
+N + + T + + SG CQF+D
Sbjct: 31 VNDSLHLNYTKIEQLCSGAAYCQFMDM 57
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,308,720
Number of extensions: 52818
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 40
Length of query: 160
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 75
Effective length of database: 3,632,490
Effective search space: 272436750
Effective search space used: 272436750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)