RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein
[Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 27.5 bits (60), Expect = 0.59
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIRNTS 100
Y +L Y++K G +T S ++ + + ++ KL + TS
Sbjct: 138 YEAQTEPVLEYYRKKGVLETFSGTETNKIWP------HVYAFLQTKLPQRSQETS 186
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 27.2 bits (59), Expect = 0.68
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGSSSVLATGSYHVKINQDVEIKLTSLIR 97
+ ++ ++++ G + I+ + K+ D+ L L R
Sbjct: 140 NMKQMKPLVDFYEQKGYLRNINGEQDME---------KVFADIRELLGGLAR 182
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 27.2 bits (59), Expect = 0.76
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 40 PMDITGYWEDDNGILSYFQKDGKFKT 65
PM ++GY + + KDG +
Sbjct: 392 PMIMSGYVNNPEATNALIDKDGWLHS 417
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 26.9 bits (58), Expect = 0.83
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y + I+ +++ GK K I S
Sbjct: 153 YLQSTKPIIDLYEEMGKVKKIDASKS 178
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 26.4 bits (57), Expect = 1.2
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y ++ Y+ K G I +
Sbjct: 148 YHTQTTPLVEYYSKRGIHSAIDASQT 173
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic
domain {Enterococcus faecium [TaxId: 1352]}
Length = 122
Score = 26.2 bits (58), Expect = 1.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 59 KDGKFKTISTDGSSSVLATGSYHVKINQDVEIK-LTSLIRN 98
D KFK+ T + G+Y I D E + L I
Sbjct: 65 NDTKFKS--TKRGEVTVPVGTYSWTIQTDSETEALKKAILA 103
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 26.4 bits (57), Expect = 1.3
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y++ ++++++K G + ++ +GS
Sbjct: 153 YYKATEPVIAFYEKRGIVRKVNAEGS 178
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 26.1 bits (56), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+ E ++ YF+ K + D S
Sbjct: 155 FKETSMPVIEYFETKSKVVRVRCDRS 180
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 26.1 bits (56), Expect = 1.8
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
Y I+ +++K G + +
Sbjct: 140 YHAQTEPIVDFYKKTGIWAGVDASQP 165
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836)
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 26.0 bits (56), Expect = 1.8
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 34 SELLPEPMDITGYWEDDNGILSYFQKD 60
L + G WE + + ++F
Sbjct: 17 LPGLFD-GGARGLWEREGEVWAFFPAP 42
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 25.7 bits (55), Expect = 2.2
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+ ++ ++ K K K I +
Sbjct: 152 FNVQTKLVIDHYNKFDKVKIIPANRD 177
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 25.2 bits (54), Expect = 2.6
Identities = 2/26 (7%), Positives = 7/26 (26%)
Query: 46 YWEDDNGILSYFQKDGKFKTISTDGS 71
+L+++ I+
Sbjct: 140 NMNQTAPLLAFYDSKEVLVNINGQKD 165
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin
{Bacteriophage cp-1 [TaxId: 10747]}
Length = 149
Score = 25.2 bits (54), Expect = 2.7
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 5/37 (13%)
Query: 43 ITGYWEDDNGILSYFQKDG-----KFKTISTDGSSSV 74
++ + + +G T DG +V
Sbjct: 112 VSNEFIKSGKGWYFMNTNGELADNPSFTKEPDGLITV 148
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 25.2 bits (54), Expect = 2.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 40 PMDITGYWEDDNGILSYFQKDGKFKT 65
P GY+ ++ S DG F+T
Sbjct: 384 PWITGGYYGNEEATRSALTPDGFFRT 409
>d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Length = 179
Score = 24.8 bits (54), Expect = 3.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 98 NTSGKIQCQFLDSNKLNCLAKDQ 120
N G I+C F + KD
Sbjct: 46 NNGGVIECSFPYNKSELTGVKDL 68
>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 174
Score = 24.8 bits (54), Expect = 3.9
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 12/66 (18%)
Query: 48 EDDNGILSYF--------QKDGKFKTISTDGSSSVLATG----SYHVKINQDVEIKLTSL 95
E G L + + + + + + G +HV+I D + L
Sbjct: 86 EGLKGRLRPYAVLNPGWVKIGLDMNNANVESAEIITFGGKEYRRFHVRIEFDRTAGVKEL 145
Query: 96 IRNTSG 101
G
Sbjct: 146 HIGVVG 151
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 24.7 bits (54), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 84 INQDVEIKLTSLIRNTSGKIQCQFLDS 110
IN+ +++ LT + + SG CQF+D
Sbjct: 12 INESLQLNLTKIEQLCSGAAYCQFMDM 38
>d2bjqa2 b.169.1.1 (A:5-174) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform A [TaxId: 6253]}
Length = 170
Score = 24.8 bits (54), Expect = 4.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 98 NTSGKIQCQFLDSNKLNCLAKD 119
N +G ++C F + A+D
Sbjct: 46 NDNGNVECSFPYNKVELTGARD 67
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 24.4 bits (51), Expect = 4.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 115 CLAKDQKQFYLRRTHLTELPSSKPQ 139
CL + + L L+ LP P
Sbjct: 35 CLDRQAHELELNNLGLSSLPELPPH 59
>d2grga1 d.110.10.1 (A:1-98) Uncharacterized protein YNR034W-A
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 98
Score = 24.5 bits (53), Expect = 5.0
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 15 LVAAIAVVSCSALSVVVDSSELLPEPMDITGY--WEDDNGILSYFQKDGKFKTISTDGSS 72
L+ V S + + + GY +ED I F+K G F T +
Sbjct: 26 LLDTSGVAKVIEKSPIAEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 85
Query: 73 S 73
+
Sbjct: 86 N 86
>d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR
{Escherichia coli [TaxId: 562]}
Length = 50
Score = 23.5 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 49 DDNGILSYFQKDGKFKTISTD 69
DD G++SY + G I+ D
Sbjct: 22 DDTGLVSYHDQQGNAMQINRD 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 567,488
Number of extensions: 23255
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 32
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)