Query         gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 343
No_of_seqs    129 out of 1620
Neff          6.6 
Searched_HMMs 39220
Date          Mon May 23 12:01:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780200.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00035 hemH ferrochelatase;  100.0       0       0  786.5  34.3  323   14-343     1-323 (325)
  2 COG0276 HemH Protoheme ferro-l 100.0       0       0  742.5  33.3  319   15-341     2-320 (320)
  3 pfam00762 Ferrochelatase Ferro 100.0       0       0  733.7  33.3  311   18-339     1-312 (312)
  4 TIGR00109 hemH ferrochelatase; 100.0       0       0  734.7  30.4  325   14-340     1-339 (339)
  5 PRK12435 ferrochelatase; Provi 100.0       0       0  665.4  31.8  303   15-343     2-310 (316)
  6 KOG1321 consensus              100.0       0       0  623.5  27.3  322   12-341    32-362 (395)
  7 cd03411 Ferrochelatase_N Ferro 100.0 1.4E-45       0  338.0  14.4  158   19-183     1-159 (159)
  8 cd00419 Ferrochelatase_C Ferro 100.0 3.9E-43       0  320.9  14.4  135  188-322     1-135 (135)
  9 cd03409 Chelatase_Class_II Cla  99.3 9.4E-12 2.4E-16  102.4   7.0   87  208-308     2-88  (101)
 10 pfam06180 CbiK Cobalt chelatas  99.1 7.8E-07   2E-11   68.2  23.3  193  122-339    57-255 (256)
 11 COG2138 Sirohydrochlorin ferro  98.6 4.2E-05 1.1E-09   56.1  19.7  226   87-341    10-242 (245)
 12 PRK00923 sirohydrochlorin coba  98.5 2.4E-06 6.2E-11   64.8  10.1   83  112-198    36-130 (130)
 13 COG0276 HemH Protoheme ferro-l  98.3  0.0001 2.6E-09   53.5  14.9  156  157-341    18-179 (320)
 14 PRK02395 hypothetical protein;  98.2   3E-05 7.7E-10   57.2  10.6  205  113-338    37-260 (284)
 15 cd03414 CbiX_SirB_C Sirohydroc  98.2 0.00016 4.1E-09   52.1  13.9  115  207-339     2-117 (117)
 16 PRK00923 sirohydrochlorin coba  98.1  0.0002 5.1E-09   51.5  13.4  119  206-339     4-130 (130)
 17 PRK12435 ferrochelatase; Provi  98.1  0.0002 5.1E-09   51.5  13.1   24  177-200   285-308 (316)
 18 cd03409 Chelatase_Class_II Cla  98.1   2E-05 5.2E-10   58.4   7.9   55   91-148    15-70  (101)
 19 PRK00035 hemH ferrochelatase;   97.9 0.00047 1.2E-08   48.9  12.7   77  121-200   242-321 (325)
 20 pfam00762 Ferrochelatase Ferro  97.9 0.00045 1.1E-08   49.0  12.0  109  224-340    63-174 (312)
 21 cd03414 CbiX_SirB_C Sirohydroc  97.9 0.00019 4.8E-09   51.6   9.5   92   99-198    23-117 (117)
 22 COG4822 CbiK Cobalamin biosynt  97.8  0.0041 1.1E-07   42.3  23.4  205  102-339    47-257 (265)
 23 cd03415 CbiX_CbiC Archaeal sir  97.5  0.0014 3.6E-08   45.6   9.3  114  207-337     2-124 (125)
 24 pfam01903 CbiX CbiX. The funct  97.5  0.0023 5.8E-08   44.1  10.3   97  227-332     9-105 (106)
 25 pfam01903 CbiX CbiX. The funct  97.4  0.0012 3.2E-08   45.9   8.3   91  101-192    14-106 (106)
 26 TIGR00109 hemH ferrochelatase;  97.1    0.01 2.6E-07   39.6  10.5  160  157-340    20-190 (339)
 27 cd03415 CbiX_CbiC Archaeal sir  97.1 0.00082 2.1E-08   47.2   4.4   93   97-197    21-125 (125)
 28 PRK05782 precorrin-8X methylmu  96.9   0.021 5.2E-07   37.5  10.4   98   96-201    23-132 (332)
 29 PRK05782 precorrin-8X methylmu  96.8   0.057 1.4E-06   34.4  12.2   59  264-331   263-323 (332)
 30 pfam06180 CbiK Cobalt chelatas  96.8  0.0087 2.2E-07   40.1   7.9   32   19-50      1-36  (256)
 31 cd03416 CbiX_SirB_N Sirohydroc  96.8    0.04   1E-06   35.5  10.9   57  264-321    44-100 (101)
 32 KOG1321 consensus               96.4   0.056 1.4E-06   34.4   9.7  108   89-202   246-364 (395)
 33 cd03416 CbiX_SirB_N Sirohydroc  96.2   0.037 9.4E-07   35.7   8.0   50   98-150    21-71  (101)
 34 COG2138 Sirohydrochlorin ferro  96.1   0.072 1.8E-06   33.6   8.8   24   18-41      2-25  (245)
 35 cd03411 Ferrochelatase_N Ferro  95.9    0.18 4.7E-06   30.8  10.3   95  223-324    63-159 (159)
 36 cd03413 CbiK_C Anaerobic cobal  94.9   0.038 9.6E-07   35.6   4.1   44  102-145    21-64  (103)
 37 cd03412 CbiK_N Anaerobic cobal  94.4     0.5 1.3E-05   27.8  10.4   43  122-169    55-97  (127)
 38 cd03412 CbiK_N Anaerobic cobal  94.1    0.59 1.5E-05   27.3   9.2  107  229-339    14-127 (127)
 39 PRK13129 consensus              84.6     3.6 9.2E-05   21.8  11.0  215   18-289    18-239 (267)
 40 TIGR01371 met_syn_B12ind 5-met  81.4     4.7 0.00012   21.0   7.0  141  118-293   427-591 (778)
 41 cd06811 PLPDE_III_yhfX_like Ty  81.2     4.8 0.00012   21.0   6.6   44   96-144    39-85  (382)
 42 PRK09545 znuA high-affinity zi  79.4     5.5 0.00014   20.6  12.4  211   95-337    62-302 (308)
 43 PRK08176 pdxK pyridoxal kinase  78.3     5.9 0.00015   20.4  10.4  197  119-335    26-243 (281)
 44 PRK09613 thiH thiamine biosynt  78.0       6 0.00015   20.3   5.9   61  265-335   367-427 (471)
 45 PRK13609 diacylglycerol glucos  74.2     7.5 0.00019   19.6   9.2  103  171-285   128-237 (388)
 46 KOG0159 consensus               72.9     2.3 5.8E-05   23.2   1.9   27  254-289   435-461 (519)
 47 PRK05756 pyridoxamine kinase;   72.1     8.4 0.00021   19.3  11.6  195  120-335    14-233 (287)
 48 CHL00194 ycf39 Ycf39; Provisio  70.8     8.9 0.00023   19.1  10.1  141  127-288    92-234 (319)
 49 TIGR02684 dnstrm_HI1420 probab  70.3     9.1 0.00023   19.0   4.9   63   33-104    13-86  (91)
 50 cd01173 pyridoxal_pyridoxamine  68.3      10 0.00026   18.7  10.3  197  120-336    11-229 (254)
 51 cd07993 LPLAT_DHAPAT-like Lyso  68.1      10 0.00026   18.7   4.4   62  225-293    85-153 (205)
 52 PRK13139 consensus              67.5      10 0.00027   18.6  10.7  227   20-308    18-250 (254)
 53 COG4750 LicC CTP:phosphocholin  66.2     6.4 0.00016   20.1   3.0   71   85-181     8-78  (231)
 54 COG1312 UxuA D-mannonate dehyd  65.7      11 0.00029   18.4   4.2   76  232-311   230-311 (362)
 55 pfam04273 DUF442 Putative phos  65.6      11 0.00029   18.4   7.5   65  268-337    18-84  (110)
 56 cd04182 GT_2_like_f GT_2_like_  65.4      11 0.00029   18.4   5.8   24  120-143    24-47  (186)
 57 PRK01506 consensus              64.4      12  0.0003   18.2  11.8  163  128-320    79-278 (317)
 58 PRK04117 consensus              63.5      12 0.00031   18.1  14.9  164  129-321    74-273 (309)
 59 PRK06765 homoserine O-acetyltr  63.2      12 0.00032   18.1   6.3   66  265-337   308-377 (387)
 60 KOG3062 consensus               63.0     7.3 0.00019   19.7   2.8   52   98-150    63-114 (281)
 61 PRK01999 consensus              62.6      13 0.00032   18.0  13.3  162  129-321    75-274 (311)
 62 COG0761 lytB 4-Hydroxy-3-methy  62.6      13 0.00033   18.0   6.0   46  268-323   204-249 (294)
 63 COG1453 Predicted oxidoreducta  61.1      14 0.00035   17.8  10.1  114   99-220    37-160 (391)
 64 PRK06849 hypothetical protein;  60.0      14 0.00036   17.7   5.4   17  228-244   236-252 (387)
 65 TIGR00677 fadh2_euk methylenet  59.9      14 0.00036   17.7   4.7   53   86-143    45-100 (312)
 66 PRK00077 eno phosphopyruvate h  59.7      14 0.00036   17.7   5.7  186  136-333   161-380 (427)
 67 TIGR00249 sixA phosphohistidin  59.6      14 0.00037   17.7   4.4   52  231-285    64-117 (169)
 68 cd01020 TroA_b Metal binding p  57.3      16  0.0004   17.4  11.5  143  177-337    94-258 (264)
 69 TIGR00110 ilvD dihydroxy-acid   56.4      14 0.00035   17.8   3.3   56   89-144    31-104 (601)
 70 PRK00175 metX homoserine O-ace  56.0      16 0.00042   17.2   5.8   68  265-339   299-370 (379)
 71 PRK13137 consensus              55.9      16 0.00042   17.2  10.6  220   20-297    27-251 (266)
 72 TIGR02720 pyruv_oxi_spxB pyruv  55.3      14 0.00036   17.7   3.2   56  128-198     5-60  (577)
 73 TIGR00216 ispH_lytB 4-hydroxy-  54.5      17 0.00044   17.1   4.3   19   20-43     87-105 (354)
 74 PRK13135 consensus              54.3      17 0.00044   17.1  10.6  218   18-294    17-240 (267)
 75 cd01979 Pchlide_reductase_N Pc  54.2      17 0.00045   17.1  11.6   58  116-178    66-123 (396)
 76 KOG4357 consensus               53.4      13 0.00032   18.1   2.7   29   15-43     62-90  (164)
 77 KOG1322 consensus               53.3      18 0.00046   17.0   6.7   88  113-213    34-121 (371)
 78 PRK12677 xylose isomerase; Pro  51.7      19 0.00049   16.8   4.3   17  318-334   340-356 (389)
 79 PRK13121 consensus              51.5      19 0.00049   16.8   9.8  189   20-252    19-212 (265)
 80 TIGR00538 hemN oxygen-independ  50.6      20  0.0005   16.7   3.3  191   86-341   111-313 (462)
 81 COG1213 Predicted sugar nucleo  50.1      16  0.0004   17.4   2.7   30  111-143    23-52  (239)
 82 pfam06888 Put_Phosphatase Puta  50.0      20 0.00052   16.6   3.4   21  122-143    73-95  (234)
 83 pfam05013 FGase N-formylglutam  49.7      20 0.00052   16.6   5.4   31  185-218   113-143 (221)
 84 PRK13113 consensus              49.2      21 0.00053   16.5  10.4  191   18-252    17-212 (263)
 85 TIGR00676 fadh2 5,10-methylene  49.1      21 0.00053   16.5   4.2   45   95-143    61-108 (302)
 86 PRK08332 ribonucleotide-diphos  48.9      21 0.00054   16.5   6.1   86  207-293  1368-1482(1748)
 87 TIGR03599 YloV DAK2 domain fus  48.4      21 0.00055   16.4  10.8   53  260-322   343-395 (530)
 88 pfam06685 DUF1186 Protein of u  47.8      22 0.00056   16.4   4.9   77  220-306   141-219 (249)
 89 cd06594 GH31_glucosidase_YihQ   47.5      22 0.00056   16.4   4.9   74  122-202    70-156 (317)
 90 COG1608 Predicted archaeal kin  47.2      13 0.00032   18.1   1.9   92  112-212    73-169 (252)
 91 pfam05378 Hydant_A_N Hydantoin  47.1      22 0.00057   16.3   4.3   47  259-311   124-175 (175)
 92 PRK12360 4-hydroxy-3-methylbut  46.9      22 0.00057   16.3   5.9   28  270-299   203-230 (281)
 93 PRK13575 3-dehydroquinate dehy  46.2      23 0.00059   16.2   6.8   46   90-135    12-59  (238)
 94 TIGR01137 cysta_beta cystathio  46.2      15 0.00037   17.6   2.1   36    9-53    295-330 (527)
 95 PRK13116 consensus              45.6      24  0.0006   16.2  10.5  248   20-337    19-272 (278)
 96 TIGR00284 TIGR00284 dihydropte  44.8      24 0.00062   16.1   6.9  163   15-197   185-368 (529)
 97 TIGR02134 transald_staph trans  44.4      13 0.00033   18.0   1.6   12  266-277   199-211 (237)
 98 TIGR00689 rpiB_lacA_lacB sugar  44.3      25 0.00063   16.0   3.8   18  223-240    38-55  (146)
 99 TIGR01258 pgm_1 phosphoglycera  44.1      17 0.00043   17.2   2.2   14  154-167   183-196 (248)
100 PRK10714 undecaprenyl phosphat  43.2      25 0.00065   15.9   5.5   25  118-143   101-125 (324)
101 PRK06129 3-hydroxyacyl-CoA deh  42.1      26 0.00068   15.8   3.0   34  258-291   155-191 (308)
102 PRK13118 consensus              41.8      27 0.00068   15.8  10.1  222   17-295    15-242 (269)
103 TIGR01793 cit_synth_euk citrat  41.6      27 0.00069   15.8   5.9   23   86-112    96-118 (430)
104 pfam08645 PNK3P Polynucleotide  41.6      27 0.00069   15.8   6.6   24  119-143    28-51  (158)
105 cd06422 NTP_transferase_like_1  41.3      27 0.00069   15.7   5.2   48  120-177    28-75  (221)
106 pfam02543 CmcH_NodU Carbamoylt  40.9      18 0.00046   16.9   1.9   24  233-258   253-278 (360)
107 PRK00881 purH bifunctional pho  40.8      28 0.00071   15.7   3.6   41  254-296   302-343 (514)
108 cd01310 TatD_DNAse TatD like p  40.2      28 0.00072   15.6  12.4  137  121-285    13-152 (251)
109 TIGR01481 ccpA catabolite cont  40.1      16 0.00041   17.3   1.6  202   68-313    45-264 (332)
110 pfam02401 LYTB LytB protein. T  39.1      29 0.00075   15.5   6.0   30  268-299   200-229 (280)
111 PRK07105 pyridoxamine kinase;   39.0      29 0.00075   15.5   8.6  192  120-335    16-232 (284)
112 PRK09432 metF 5,10-methylenete  38.1      30 0.00077   15.4   3.8   53   87-144    63-118 (296)
113 TIGR01415 trpB_rel pyridoxal-p  38.1      30 0.00077   15.4   5.8  123   71-202    56-215 (426)
114 COG2240 PdxK Pyridoxal/pyridox  37.6      31 0.00079   15.3   9.8  200  121-335    13-227 (281)
115 TIGR02767 TraG-Ti Ti-type conj  37.2      31  0.0008   15.3   2.6  133   67-214   193-350 (641)
116 TIGR00962 atpA ATP synthase F1  36.8      32 0.00081   15.3   5.4   91  117-224   240-343 (520)
117 TIGR02759 TraD_Ftype type IV c  36.7      32 0.00081   15.2   6.2  131   36-185    98-257 (613)
118 pfam08029 HisG_C HisG, C-termi  36.7      32 0.00081   15.2   3.1   23  123-145    48-70  (73)
119 PRK04781 histidinol-phosphate   36.3      32 0.00082   15.2   7.4   14  323-336   347-360 (362)
120 TIGR02843 CyoB cytochrome o ub  36.1      24 0.00061   16.1   1.9   31  185-215    71-107 (646)
121 PTZ00081 enolase (2-phospho-D-  35.7      33 0.00084   15.1   5.4  182  136-333   171-395 (442)
122 pfam08981 consensus             35.7      33 0.00084   15.1   6.0  144  123-291    12-168 (181)
123 COG0803 LraI ABC-type metal io  35.3      34 0.00085   15.1   9.6  143  176-338   131-297 (303)
124 cd01465 vWA_subgroup VWA subgr  35.2      31 0.00079   15.3   2.4   38  279-323   128-165 (170)
125 cd06431 GT8_LARGE_C LARGE cata  34.5      24 0.00062   16.1   1.7   36  129-169    90-125 (280)
126 KOG0467 consensus               34.4      35 0.00088   15.0   7.0   49  225-277   202-250 (887)
127 pfam07302 AroM AroM protein. T  33.8      33 0.00085   15.1   2.3  187   25-295     6-196 (221)
128 COG0406 phoE Broad specificity  33.5      36 0.00091   14.9   9.5  122   88-220    26-160 (208)
129 PRK12391 tryptophan synthase s  33.1      36 0.00092   14.9   8.7   96   27-153    27-134 (419)
130 PRK10481 hypothetical protein;  32.8      36 0.00092   14.9   2.4  193   17-294     3-198 (224)
131 TIGR01211 ELP3 histone acetylt  32.8      32  0.0008   15.3   2.1  166  125-314   249-457 (573)
132 cd01841 NnaC_like NnaC (CMP-Ne  32.7      37 0.00094   14.8   7.2   23  128-150    80-103 (174)
133 COG1250 FadB 3-hydroxyacyl-CoA  32.3      35  0.0009   14.9   2.3   35  258-293   155-192 (307)
134 COG0434 SgcQ Predicted TIM-bar  32.1      37 0.00096   14.7   3.1   34  179-213   120-153 (263)
135 TIGR01916 F420_puta_dedox F420  32.0      32 0.00081   15.3   2.0   55  188-242   137-210 (260)
136 TIGR03455 HisG_C-term ATP phos  32.0      38 0.00096   14.7   2.9   23  265-287    75-97  (100)
137 KOG1461 consensus               31.8      38 0.00097   14.7   3.1   21  123-143    56-76  (673)
138 pfam09379 FERM_N FERM N-termin  31.6      38 0.00097   14.7   3.7   36  231-266    20-56  (79)
139 PRK00553 ribose-phosphate pyro  31.4      39 0.00098   14.7  11.0   64  232-298   189-276 (340)
140 COG3739 Uncharacterized integr  31.4      19 0.00049   16.8   0.8   33  134-166   100-132 (263)
141 cd06592 GH31_glucosidase_KIAA1  31.0      39   0.001   14.6  11.2   99   94-200    27-153 (303)
142 pfam07429 Fuc4NAc_transf 4-alp  30.9      39   0.001   14.6   5.4   26   52-83     87-112 (361)
143 PRK13122 consensus              30.6      40   0.001   14.6   9.9  212   16-288     1-217 (242)
144 TIGR02079 THD1 threonine dehyd  30.6      40   0.001   14.6   3.3   56  154-210   120-177 (415)
145 TIGR01422 phosphonatase phosph  30.4      40   0.001   14.6   8.1  121   55-236    45-167 (199)
146 pfam07796 DUF1638 Protein of u  30.3      40   0.001   14.5   4.3  131   96-244    12-148 (166)
147 pfam05675 DUF817 Protein of un  30.2      40   0.001   14.5   2.4   33  134-166    89-121 (235)
148 pfam03786 UxuA D-mannonate deh  30.1      40   0.001   14.5   4.5   93  211-317   212-312 (350)
149 TIGR02810 agaZ_gatZ D-tagatose  30.1      40   0.001   14.5   3.7  257    9-295    20-396 (430)
150 pfam01888 CbiD CbiD. CbiD is e  29.7      41   0.001   14.5   6.0   77  177-285   174-250 (261)
151 cd01714 ETF_beta The electron   29.7      41   0.001   14.5   6.3   51   89-144    34-84  (202)
152 TIGR03624 conserved hypothetic  29.6      11 0.00029   18.3  -0.6   48  229-276   136-190 (345)
153 cd06425 M1P_guanylylT_B_like_N  29.5      41  0.0011   14.5   3.7   24  120-143    29-52  (233)
154 PRK10426 alpha-glucosidase; Pr  29.5      41  0.0011   14.4   7.0  202  122-336   313-563 (682)
155 pfam02571 CbiJ Precorrin-6x re  29.4      41  0.0011   14.4   4.9   48  125-179    52-100 (246)
156 PRK13112 consensus              29.4      42  0.0011   14.4  10.2  221   17-294    16-242 (279)
157 PRK09029 O-succinylbenzoic aci  29.3      42  0.0011   14.4   2.7   35  249-285   346-386 (458)
158 cd03013 PRX5_like Peroxiredoxi  29.2      42  0.0011   14.4   3.1   22  125-146    53-74  (155)
159 COG1489 SfsA DNA-binding prote  29.2      42  0.0011   14.4   2.8   17  178-194   186-202 (235)
160 PRK13117 consensus              28.9      42  0.0011   14.4  11.1  221   17-294    15-242 (268)
161 KOG3112 consensus               28.8      42  0.0011   14.4   2.7   29  116-144    93-121 (262)
162 PRK09932 glycerate kinase II;   28.5      43  0.0011   14.3   2.4   63  230-300   265-337 (381)
163 smart00855 PGAM Phosphoglycera  28.5      43  0.0011   14.3   6.9   37   88-126    23-59  (155)
164 PTZ00110 helicase; Provisional  28.5      43  0.0011   14.3   5.8   60   93-163   262-322 (602)
165 KOG0488 consensus               28.4      11 0.00028   18.5  -0.9   67  208-279   177-244 (309)
166 KOG0884 consensus               28.3      43  0.0011   14.3   3.3   15  286-300   118-132 (161)
167 TIGR02494 PFLE_PFLC glycyl-rad  28.3      43  0.0011   14.3   8.3  128   77-217   125-270 (305)
168 PRK07238 bifunctional RNase H/  28.3      43  0.0011   14.3  10.1   97  228-332   231-331 (375)
169 COG1208 GCD1 Nucleoside-diphos  28.2      43  0.0011   14.3   2.8   23  121-143    31-53  (358)
170 PRK00050 mraW S-adenosyl-methy  28.1      44  0.0011   14.3   4.0   17  206-222   235-251 (309)
171 cd01019 ZnuA Zinc binding prot  28.0      44  0.0011   14.3  11.8  215   95-337    43-281 (286)
172 TIGR01125 TIGR01125 MiaB-like   27.9      44  0.0011   14.3   6.1  143   34-193   103-280 (475)
173 cd01994 Alpha_ANH_like_IV This  27.7      44  0.0011   14.2  11.9  127  129-284    16-144 (194)
174 PRK09627 oorA 2-oxoglutarate-a  27.5      45  0.0011   14.2   6.9   35  303-337   340-374 (375)
175 TIGR03571 lucif_BA3436 lucifer  27.5      45  0.0011   14.2   3.8   36  264-299   255-290 (298)
176 COG0159 TrpA Tryptophan syntha  27.5      45  0.0011   14.2  10.5  190   19-252    18-212 (265)
177 pfam12098 DUF3574 Protein of u  27.3      27  0.0007   15.7   1.0   65  250-321    38-102 (104)
178 PRK09997 hydroxypyruvate isome  27.1      45  0.0012   14.2   7.0   85  125-210    87-177 (258)
179 PRK08208 coproporphyrinogen II  26.7      46  0.0012   14.1  13.1  117   85-208   103-231 (436)
180 TIGR00423 TIGR00423 conserved   26.6      46  0.0012   14.1   5.0   43   96-138    77-128 (331)
181 TIGR00588 ogg 8-oxoguanine DNA  26.5      30 0.00077   15.4   1.1   60  223-293   229-290 (379)
182 PRK09533 bifunctional transald  26.2      47  0.0012   14.1   6.5   66  118-193   436-503 (950)
183 pfam05990 DUF900 Alpha/beta hy  26.1      47  0.0012   14.0  11.9   24  120-143    75-99  (230)
184 COG4555 NatA ABC-type Na+ tran  26.0      47  0.0012   14.0   2.7   26  193-218   171-196 (245)
185 KOG3182 consensus               26.0      47  0.0012   14.0   3.5   12  229-240   134-145 (212)
186 pfam01795 Methyltransf_5 MraW   25.8      48  0.0012   14.0   4.3   17  206-222   236-252 (310)
187 PRK00347 sugar fermentation st  25.7      48  0.0012   14.0   3.9   23  256-278   187-209 (234)
188 COG3384 Aromatic ring-opening   25.7      48  0.0012   14.0   4.6   14   19-32      9-22  (268)
189 TIGR02207 lipid_A_htrB lipid A  25.6      48  0.0012   14.0   2.5   11  207-217   124-134 (308)
190 TIGR01494 ATPase_P-type ATPase  25.6      48  0.0012   14.0   5.9  114  180-300   238-360 (478)
191 TIGR02208 lipid_A_msbB lipid A  25.6      48  0.0012   14.0   2.4   18  127-144   114-131 (307)
192 PRK00025 lpxB lipid-A-disaccha  25.4      49  0.0012   14.0   6.7   16  322-337   365-380 (382)
193 cd01451 vWA_Magnesium_chelatas  25.0      49  0.0013   13.9   5.3   53  270-336   125-177 (178)
194 pfam06821 DUF1234 Alpha/Beta h  24.9      50  0.0013   13.9   3.7   34  181-218    34-67  (171)
195 TIGR03099 dCO2ase_PEP1 pyridox  24.9      45  0.0012   14.2   1.7   43   87-131    23-70  (398)
196 pfam12309 KBP_C KIF-1 binding   24.8      50  0.0013   13.9   2.0   19  177-195   152-170 (365)
197 pfam02629 CoA_binding CoA bind  24.8      50  0.0013   13.9   3.1   30  114-143    63-93  (96)
198 COG1090 Predicted nucleoside-d  24.8      50  0.0013   13.9   6.1   24  305-336   272-295 (297)
199 PRK10302 hypothetical protein;  24.7      50  0.0013   13.9   4.8   79  120-200   137-226 (272)
200 PRK13111 trpA tryptophan synth  24.6      50  0.0013   13.9  10.4  218   18-294     9-232 (256)
201 KOG2599 consensus               24.5      50  0.0013   13.9   9.3  175  146-338    54-240 (308)
202 cd02523 PC_cytidylyltransferas  24.3      51  0.0013   13.8   2.2   25  120-144    27-51  (229)
203 TIGR01162 purE phosphoribosyla  24.2      51  0.0013   13.8   3.5   29  191-219    14-42  (159)
204 cd04724 Tryptophan_synthase_al  24.2      51  0.0013   13.8  10.8  186   22-252     4-194 (242)
205 PRK10799 putative hydrolase-ox  23.8      52  0.0013   13.8   9.6   41  298-339   194-234 (247)
206 PRK13115 consensus              23.6      52  0.0013   13.7   9.7  214   17-289    22-242 (269)
207 pfam00113 Enolase_C Enolase, C  23.4      53  0.0013   13.7   5.5  120  178-332   130-249 (296)
208 pfam10103 DUF2342 Uncharacteri  23.3      22 0.00055   16.4  -0.1   46  231-276   140-192 (341)
209 PRK02269 ribose-phosphate pyro  23.2      53  0.0014   13.7  14.6  165  128-321    75-279 (321)
210 TIGR01615 A_thal_3542 uncharac  23.1      54  0.0014   13.7   1.9   48  214-266    89-141 (144)
211 COG4623 Predicted soluble lyti  23.0      54  0.0014   13.7   5.2   17  258-276   385-401 (473)
212 TIGR02812 fadR_gamma fatty aci  22.8      54  0.0014   13.6   2.3  122   71-201     7-163 (275)
213 KOG0460 consensus               22.8      54  0.0014   13.6   5.5   95  208-312   104-205 (449)
214 COG0474 MgtA Cation transport   22.8      54  0.0014   13.6   4.5   51  250-312   536-586 (917)
215 TIGR02094 more_P_ylases alpha-  22.7      46  0.0012   14.1   1.5   51  225-275   413-466 (618)
216 cd01017 AdcA Metal binding pro  22.5      55  0.0014   13.6  12.3  204   95-335    43-274 (282)
217 PRK10927 essential cell divisi  22.5      55  0.0014   13.6   3.4   54  225-284   247-315 (319)
218 COG1350 Predicted alternative   22.2      56  0.0014   13.6   5.9   68   71-149    65-139 (432)
219 cd04198 eIF-2B_gamma_N The N-t  22.1      56  0.0014   13.5   5.2   24  121-144    30-53  (214)
220 PRK06827 phosphoribosylpyropho  22.1      56  0.0014   13.5   3.6  149  129-298   115-314 (381)
221 cd02538 G1P_TT_short G1P_TT_sh  21.9      56  0.0014   13.5   2.2   25  120-144    29-53  (240)
222 cd04197 eIF-2B_epsilon_N The N  21.9      56  0.0014   13.5   7.5   24  121-144    30-53  (217)
223 TIGR01710 typeII_sec_gspG gene  21.8      57  0.0014   13.5   3.1   58   59-135    15-72  (137)
224 cd06595 GH31_xylosidase_XylS-l  21.7      57  0.0015   13.5   6.7   76  122-202    73-149 (292)
225 pfam03945 Endotoxin_N delta en  21.6      57  0.0015   13.5   3.7   55  114-170   100-154 (224)
226 cd01461 vWA_interalpha_trypsin  21.6      57  0.0015   13.5   4.2   44  266-319   117-160 (171)
227 PRK13463 phosphatase PhoE; Pro  21.5      57  0.0015   13.5   9.2  124   88-221    26-159 (203)
228 pfam11633 Nsp3 Replicase polyp  21.5      58  0.0015   13.5   1.9   54  266-325    80-133 (142)
229 PRK13389 UTP--glucose-1-phosph  21.4      58  0.0015   13.5   3.0   25  120-144    37-61  (302)
230 PRK05282 peptidase E; Validate  20.9      59  0.0015   13.4   6.3   13   35-47     18-30  (233)
231 PRK10015 hypothetical protein;  20.8      59  0.0015   13.4   5.8   12  206-217   272-283 (429)
232 TIGR01429 AMP_deaminase AMP de  20.7      14 0.00035   17.8  -1.6   42  223-266   526-582 (616)
233 pfam07090 DUF1355 Protein of u  20.7      60  0.0015   13.4   5.5  121  142-273    15-140 (183)
234 PRK10122 UTP--glucose-1-phosph  20.5      60  0.0015   13.3   5.1   25  120-144    32-56  (297)
235 PRK13134 consensus              20.4      60  0.0015   13.3  10.9  189   18-252    19-213 (257)
236 pfam06309 Torsin Torsin. This   20.4      60  0.0015   13.3   3.7   37  180-217    27-63  (127)
237 TIGR01392 homoserO_Ac_trn homo  20.3      61  0.0015   13.3   4.8   59  263-328   320-379 (395)
238 PRK13405 bchH magnesium chelat  20.3      61  0.0015   13.3  12.6  184   17-217   113-316 (1207)
239 COG3222 Uncharacterized protei  20.3      61  0.0015   13.3   4.7   91  189-284    88-186 (211)
240 KOG0434 consensus               20.2      61  0.0016   13.3   5.9   25  177-201   848-872 (1070)
241 cd06376 PBP1_mGluR_groupIII Li  20.1      61  0.0016   13.3   9.4   21   20-44    106-126 (463)
242 TIGR02416 CO_dehy_Mo_lg carbon  20.1      59  0.0015   13.4   1.6   33  226-258   499-546 (775)

No 1  
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00  E-value=0  Score=786.46  Aligned_cols=323  Identities=41%  Similarity=0.728  Sum_probs=313.8

Q ss_pred             CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             77786799997178889999889999999874895441178688899876665125747889999987077887404577
Q gi|254780200|r   14 VKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRT   93 (343)
Q Consensus        14 ~~~~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~   93 (343)
                      .+|+|+||||||||||++++  ||++||++||+|++||++|+++|+++|+++|+|+|+++++++|++||    |+|||+.
T Consensus         1 ~~~~k~gvll~nlG~P~~~~--~v~~yL~~fl~d~~vi~~p~~~~~~~l~~~I~~~R~~~~~~~Y~~I~----g~SPL~~   74 (325)
T PRK00035          1 MMMKKVGVLLLNLGGPETPE--DVRPYLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAKHYESIG----GGSPLNV   74 (325)
T ss_pred             CCCCCEEEEEEECCCCCCHH--HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCHHHH
T ss_conf             98776699998578999979--99999999838997467864889999875630551599999998657----9990899


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             75999999998652247843001121045424789999987099658996317111001468999999999987179986
Q gi|254780200|r   94 HTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPS  173 (343)
Q Consensus        94 ~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~  173 (343)
                      +|+.|+++|+++|+...+++|++|||||+|+|++++++|+++||++|+++|||||||++||||+++.+.+++++.++.++
T Consensus        75 ~T~~q~~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPlyPqyS~sTtgs~~~~~~~~l~~~~~~~~  154 (325)
T PRK00035         75 ITRAQAEALEARLAQGVDLPVYLGMRYGEPSIEDAVEQLKADGVDRIVVLPLYPQYSYSTTASYFDDAARALAKLRGQPE  154 (325)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999853599933998754689977899999985798559999775114176775999999999986599996


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             42133455780068999999999997338998669998336750267627998889999999999972667567047862
Q gi|254780200|r  174 LRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ  253 (343)
Q Consensus       174 ~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQ  253 (343)
                      +++|++||++|.||++++++|++++++.+ ++++|||||||||++++++||||.+||++|+++|+++||++.++|.+|||
T Consensus       155 ~~~I~~~~~~p~yI~a~~~~I~~~l~~~~-~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~~~fQ  233 (325)
T PRK00035        155 IRTIRSYYDHPGYIEALAESIREALAQLG-RPDRLLFSAHGLPKRYIDAGDPYPQQCEETARLIAEALGLGPEEYDLTYQ  233 (325)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             48847745798999999999999998679-97679996065628888649908999999999999982899534189876


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             25777654430268999989976998399974405422125588875899999997599758981689879899999999
Q gi|254780200|r  254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEK  333 (343)
Q Consensus       254 Sr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~  333 (343)
                      ||+||++||+|+|+|+|++|+++|+|+|+|+||||++||+|||||||+|+||.|.++||++|.|+|||||||.||++|++
T Consensus       234 Sr~Gp~~WL~P~t~~~l~~l~~~G~k~V~v~p~gFvsD~lETl~Eidie~~e~~~~~G~~~~~~vp~lN~~~~fi~~L~~  313 (325)
T PRK00035        234 SRFGPEPWLEPYTDDTLEELAEKGVKKIVVVPPGFVSDHLETLEEIDIEYREIAEEAGGKEYRRIPCLNDSPEFIEALAD  313 (325)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf             37789886887589999998857997599989820453446599988999999998599558980799999899999999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9999842889
Q gi|254780200|r  334 ITRRELMGWI  343 (343)
Q Consensus       334 lv~~~l~gw~  343 (343)
                      +|+++|+||.
T Consensus       314 lv~~~l~~~~  323 (325)
T PRK00035        314 LVLERLQGWP  323 (325)
T ss_pred             HHHHHHCCCC
T ss_conf             9999856999


No 2  
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=742.51  Aligned_cols=319  Identities=42%  Similarity=0.744  Sum_probs=309.8

Q ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             77867999971788899998899999998748954411786888998766651257478899999870778874045777
Q gi|254780200|r   15 KFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTH   94 (343)
Q Consensus        15 ~~~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~   94 (343)
                      .|+|+||||||||||++++  ||++||+|||+||+|+++|+++|++ |+++|++.|+++++++|++||    |+|||+.+
T Consensus         2 ~~~k~avLL~nlG~P~~~e--~v~~yL~~~~~d~~v~~~~~~~~~~-l~~~I~~~R~~~~~~~Y~~ig----g~sPL~~~   74 (320)
T COG0276           2 KMKKTAVLLLNLGGPETLE--DVRPYLKNFLSDRRVIELPRPLWYP-LAGIILPLRLKKVAKNYESIG----GKSPLNVI   74 (320)
T ss_pred             CCCCEEEEEEECCCCCCHH--HHHHHHHHHHCCCCCCCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHC----CCCCCHHH
T ss_conf             9875079998569999778--9999999983699877762455543-543310100188999999846----88943999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             59999999986522478430011210454247899999870996589963171110014689999999999871799864
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSL  174 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~  174 (343)
                      |+.|+++|+++|+ ..++.|++|||||+|+|++++++|+++|+++||++|||||||++||||+.+.+++++.+.+..+++
T Consensus        75 T~~q~~~L~~~L~-~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i  153 (320)
T COG0276          75 TRAQAAALEERLD-LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKI  153 (320)
T ss_pred             HHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf             9999999999737-998607976347898689999999971987599997776302301899999999999853789866


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             21334557800689999999999973389986699983367502676279988899999999999726675670478622
Q gi|254780200|r  175 RTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQS  254 (343)
Q Consensus       175 ~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQS  254 (343)
                      ++|++||++|.||++|+++|++++++.+.++++|||||||||++++++||||.+||.+|+++|++.||++.++|.++|||
T Consensus       154 ~~I~~~~~~p~yI~a~a~~I~~~~~~~~~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS  233 (320)
T COG0276         154 STIPDYYDEPLYIEALADSIREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQS  233 (320)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEEC
T ss_conf             88167557868999999999999974787770899956899655655699669999999999999809980340588625


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             57776544302689999899769983999744054221255888758999999975997589816898798999999999
Q gi|254780200|r  255 RFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKI  334 (343)
Q Consensus       255 r~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~l  334 (343)
                      |+||+|||+|+|+|++++|.++|+|+++|+||||+|||+|||||||+|+++.|.++||++|.|+|||||||.||++|+++
T Consensus       234 ~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~l  313 (320)
T COG0276         234 RFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALADL  313 (320)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf             99998888977999999988638984999897010212888998888899999980885189668999999999999999


Q ss_pred             HHHHHCC
Q ss_conf             9998428
Q gi|254780200|r  335 TRRELMG  341 (343)
Q Consensus       335 v~~~l~g  341 (343)
                      |++++.+
T Consensus       314 v~~~~~~  320 (320)
T COG0276         314 VRELLNE  320 (320)
T ss_pred             HHHHHCC
T ss_conf             9987329


No 3  
>pfam00762 Ferrochelatase Ferrochelatase.
Probab=100.00  E-value=0  Score=733.66  Aligned_cols=311  Identities=44%  Similarity=0.747  Sum_probs=300.6

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             67999971788899998899999998748954411786888998766651257478899999870778874045777599
Q gi|254780200|r   18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRD   97 (343)
Q Consensus        18 K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~   97 (343)
                      |+||||+|||||++++  +|++||++||+|++|+++|+++|+   +++|+++|+++++++|++|    ||+|||+.+|+.
T Consensus         1 k~aVLL~n~G~P~s~~--~v~~yL~~~l~d~~vi~~p~~~~~---~~~I~~~R~~~~~~~Y~~i----gg~SPl~~~t~~   71 (312)
T pfam00762         1 KTAVLLLNLGGPETPE--DVRPFLRNFLSDRRVIELPLQLWL---AGIILPERPKKSAEAYRKI----GGGSPLNVITRA   71 (312)
T ss_pred             CEEEEEEECCCCCCHH--HHHHHHHHHCCCCCCCCCCHHHHH---HHHCCCCCCHHHHHHHHHC----CCCCHHHHHHHH
T ss_conf             9799998678989979--999999997489986768779997---6312423579999999977----998858999999


Q ss_pred             HHHHHHHHHHCC-CCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             999999865224-7843001121045424789999987099658996317111001468999999999987179986421
Q gi|254780200|r   98 QATNLAKRLESI-SSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRT  176 (343)
Q Consensus        98 qa~~L~~~L~~~-~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~  176 (343)
                      |+++|+++|++. .+++|++|||||+|+|++++++|+++|+++|+++|||||||++||||+++.+.+++++.++.+++++
T Consensus        72 q~~~L~~~l~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lplyPqyS~~Tt~s~~~~~~~~~~~~~~~~~~~~  151 (312)
T pfam00762        72 QAEALQKRLGERGADVKVYLAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSASTTGSYLDELARALKKGRPAPEVRV  151 (312)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999999871499953898855689977889999996598769999777542303076999999999986589985127


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf             33455780068999999999997338998669998336750267627998889999999999972667567047862257
Q gi|254780200|r  177 VPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRF  256 (343)
Q Consensus       177 I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~  256 (343)
                      |++||+||.||++|+++|++++++.+.++++|||||||||++++++||||.+||.+|+++|+++||++  +|.+|||||+
T Consensus       152 I~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gdpY~~~~~~t~~~i~~~l~~~--~~~~~fQSr~  229 (312)
T pfam00762       152 IRRYYDHPGYIEALADSIREALAKLGDDPDRLLFSAHGLPERYIKKGDPYPAQCEETARLVAERLGLS--DYRLAFQSRF  229 (312)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCC--CEEEEEEECC
T ss_conf             06757898999999999999998569877469997056604677569907999999999999866987--2889998468


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             77654430268999989976998399974405422125588875899999997599758981689879899999999999
Q gi|254780200|r  257 GRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITR  336 (343)
Q Consensus       257 Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~  336 (343)
                      ||++||+|+|+++|++|+++|+|+|+|+||||++||+|||||||+|+||.|.++||++|.|+|||||||.||++|+++|+
T Consensus       230 g~~~Wl~P~t~~~l~~l~~~G~k~v~v~p~gFv~D~lETl~Eidie~~e~~~~~G~~~~~~ip~lNd~~~fi~~L~~lv~  309 (312)
T pfam00762       230 GPEPWLEPYTDDTLEELAKEGVKKVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRIPCLNDSPAFIEALADLVR  309 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998998889999999976997399988845442467699988999999997599739980899999899999999999


Q ss_pred             HHH
Q ss_conf             984
Q gi|254780200|r  337 REL  339 (343)
Q Consensus       337 ~~l  339 (343)
                      ++|
T Consensus       310 ~~l  312 (312)
T pfam00762       310 EHL  312 (312)
T ss_pred             HHC
T ss_conf             649


No 4  
>TIGR00109 hemH ferrochelatase; InterPro: IPR001015 Synonym(s): Protoheme ferro-lyase, Iron chelatase, etc.   Ferrochelatase catalyzes the last step in heme biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protoheme , . In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane.   The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved , . The human enzyme exists as a homodimer. Each subunit contains one [Fe2S2] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [Fe2S2]cluster and in stabilisation of the homodimer. The [Fe2S2] cluster ligands are Cys196, Cys403, Cys406 and Cys411. The experiments with Co(II) binding show that His230 and Asp383 are part of the enzyme active site .   Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release .; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process.
Probab=100.00  E-value=0  Score=734.67  Aligned_cols=325  Identities=35%  Similarity=0.623  Sum_probs=311.0

Q ss_pred             CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             77786799997178889999889999999874895441178688899876665125747889999987077887404577
Q gi|254780200|r   14 VKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRT   93 (343)
Q Consensus        14 ~~~~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~   93 (343)
                      +.++|+||||||||||++|+.+||++||++||.||+||++|+..||++++.+|+++|.+|+++.|++||+  .|||||..
T Consensus         1 ~k~~k~GvlL~NlGgP~~P~~e~v~~fL~~~f~Dp~~~~~~~~~~~K~~~~~I~~lR~~k~~K~Y~~iG~--EGgSPL~~   78 (339)
T TIGR00109         1 TKRKKTGVLLLNLGGPDKPKLEEVERFLKQLFADPRIIDISRAKWRKLLAKMILPLRSKKIAKNYEEIGT--EGGSPLLQ   78 (339)
T ss_pred             CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHH
T ss_conf             9888638888406642336512268999975178300116512006428999765210889999997277--78871468


Q ss_pred             HHHHHHHHHHHHHHC----CCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             759999999986522----4784300112104542478999998709965899631711100146899999999998717
Q gi|254780200|r   94 HTRDQATNLAKRLES----ISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR  169 (343)
Q Consensus        94 ~t~~qa~~L~~~L~~----~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~  169 (343)
                      ||+.|+.+|++.|+.    .-+..|++|||||+||+++++++|.+++++++|+||||||||+|||||+++.+.+++++.+
T Consensus        79 it~~Q~~~L~~~L~~~~~~~~~~~~~~am~Y~~P~~~~av~~l~~d~v~~~V~l~lYPhfS~sTtgS~f~~l~~~~~~~~  158 (339)
T TIGR00109        79 ITEQQAEALEKRLDKEIQEEIDAKVYIAMRYGEPFTEEAVKELLKDGVERLVVLPLYPHFSSSTTGSSFNELAEALKKLR  158 (339)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             99999999986244224356873304532127821899999986454648888514873000127889999999998348


Q ss_pred             CC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--C-CEEEEEECCCCHHHHHH-CCCCHHHHHHHHHHHHHHHCC
Q ss_conf             99--864213345578006899999999999733899--8-66999833675026762-799888999999999997266
Q gi|254780200|r  170 WS--PSLRTVPPYYEDSDYISALAQSIREHFESIQWT--P-EMLLVSFHQMPVSYLLK-GDPYGCHCHKTARLLKEFLSW  243 (343)
Q Consensus       170 ~~--~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~--~-~~llfSaHglP~~~~~~-gDpY~~q~~~t~~~i~~~l~~  243 (343)
                      ..  +.+++|++||++++||+||+++|++.|++.+.+  + .+|||||||||+++++. ||+|++||++|+++|++.||.
T Consensus       159 slR~~~~~~I~~w~~~~~y~~a~~d~i~~~l~~~p~p~Rd~~~LlfS~HglP~~~~d~aGD~Y~~~~~~~~~~i~~~l~~  238 (339)
T TIGR00109       159 SLRSLKISVIESWYDNEKYIKALADSIKETLKKFPEPERDKAVLLFSAHGLPQSYVDEAGDPYPAECEATTRLIAEKLGL  238 (339)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHCEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             96576314751445688799999999999984077950110687774167844777426895379999999999997133


Q ss_pred             ---CCCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             ---75670478622-57776544302689999899769983999744054221255888758999999975997589816
Q gi|254780200|r  244 ---PDDRFKICFQS-RFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVP  319 (343)
Q Consensus       244 ---~~~~~~l~fQS-r~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp  319 (343)
                         ..++|.++||| |+||.|||+|+|+|.++.|.++|+.+++|+||||++||+|||+|||+|||+.|.+.|+.+|.|+|
T Consensus       239 knt~~~~y~l~~QSe~~GP~~WL~P~T~e~~~~l~~~~~~~~~~~P~gF~~Dh~ETL~EiD~e~R~~~e~~g~~~y~~~p  318 (339)
T TIGR00109       239 KNTAPNEYRLTYQSERVGPEPWLGPYTEELLEKLGEKGVDHIVVVPIGFTADHLETLYEIDEEYREVAEEAGGKKYQRIP  318 (339)
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             57867643788621676886566632799999986506880899886301245788887566666665541244343468


Q ss_pred             CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             898798999999999999842
Q gi|254780200|r  320 CLNSSNLSIDLLEKITRRELM  340 (343)
Q Consensus       320 ~lN~~~~fi~~La~lv~~~l~  340 (343)
                      |||+++.||++||++|.+++.
T Consensus       319 ~LN~~~~FI~~~a~~V~~~l~  339 (339)
T TIGR00109       319 ALNAKPEFIEALAELVLKKLE  339 (339)
T ss_pred             CCCCCHHHHHHHHHHHHHHCC
T ss_conf             988787999999999998549


No 5  
>PRK12435 ferrochelatase; Provisional
Probab=100.00  E-value=0  Score=665.45  Aligned_cols=303  Identities=21%  Similarity=0.358  Sum_probs=274.1

Q ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             77867999971788899998899999998748954411786888998766651257478899999870778874045777
Q gi|254780200|r   15 KFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTH   94 (343)
Q Consensus        15 ~~~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~   94 (343)
                      .++|+||||||||||++++  ||++||++|++|+++++       ..+         .+..++|++|    ||+|||+.+
T Consensus         2 ~k~K~gVLL~nlG~P~s~~--dV~pyL~~i~~gr~p~~-------~~l---------~~~~~~Y~~i----gg~SPl~~~   59 (316)
T PRK12435          2 KKKKIGLLVMAYGTPESLD--DVEAYYTHIRHGRKPSE-------EAL---------EDLIGRYKAI----GGISPLAKI   59 (316)
T ss_pred             CCCCEEEEEEECCCCCCHH--HHHHHHHHHCCCCCCCH-------HHH---------HHHHHHHHHH----CCCCHHHHH
T ss_conf             9885899998789999876--89999999706899989-------999---------9999999982----898854999


Q ss_pred             HHHHHHHHHHHHHCC---CCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             599999999865224---78430011210454247899999870996589963171110014689999999999871799
Q gi|254780200|r   95 TRDQATNLAKRLESI---SSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWS  171 (343)
Q Consensus        95 t~~qa~~L~~~L~~~---~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~  171 (343)
                      |+.|+++|+++|++.   .++.|++|||||+|+|++++++|+++|+++|+++|||||||.+||+|+.+.+.++.++. +.
T Consensus        60 t~~qa~~L~~~L~~~~~~~~~~v~~gmRy~~P~i~~~l~~l~~~g~~~ii~lplyPqyS~~t~~s~~~~~~~~~~~~-~~  138 (316)
T PRK12435         60 TKEQAHKLTDSMNNMFTEYEFNCYLGLKHTAPFIEDAVEEMKRDGIEQAISIVLAPHYSTFSIKAYNERAIRLSEEI-GG  138 (316)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHC-CC
T ss_conf             99999999999715258987516774289999899999999984995699986676445420899999999999862-99


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             86421334557800689999999999973389-98669998336750267627998889999999999972667567047
Q gi|254780200|r  172 PSLRTVPPYYEDSDYISALAQSIREHFESIQW-TPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKI  250 (343)
Q Consensus       172 ~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~-~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l  250 (343)
                      |.+++|++||+||+||+|++++|++++++... +..+|||||||||++++++||||.+||++|+++|+++|++.  +|.+
T Consensus       139 p~i~~I~~~~~~p~yI~a~a~~I~~~l~~~~~~~~~~llFSaHglP~~~i~~gDpY~~q~~~t~~~va~~l~~~--~~~~  216 (316)
T PRK12435        139 PVIEPIDQWYDEPKFISYWADQIKETFTKIEDKEKAVVIFSAHSLPEKIIAAGDPYVEQLQHTADLIAAAANIQ--NYTI  216 (316)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCC--CCEE
T ss_conf             86898268789879999999999999986636566579996277855563568980899999999999974999--8569


Q ss_pred             EEECCCC-CCCCCCHHHHHHHHHHHHC-CCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             8622577-7654430268999989976-9983999744054221255888758999999975997589816898798999
Q gi|254780200|r  251 CFQSRFG-RIKCLEPPTDKTVEKLAHD-GIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSI  328 (343)
Q Consensus       251 ~fQSr~G-p~~WL~P~t~~~l~~L~~~-G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi  328 (343)
                      |||||+| |.+||+|+|+|++++|+++ |+|+|+|+||||+|||+|||||||+|+|+.|.+.|+ .|.|+|||||||.||
T Consensus       217 ~yQSr~g~p~~WL~P~t~d~l~~l~~~~~~k~vvv~Pi~FvsDhlETL~EldiE~ke~a~e~G~-~~~rvp~lN~~p~fI  295 (316)
T PRK12435        217 GWQSAGNTPDPWIGPDVQDLTRDLYEEHGYESFIYCPVGFVAEHLEVLYDNDYECKVVTDELNA-AYFRPNMPNAQSTFI  295 (316)
T ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC-CEEECCCCCCCHHHH
T ss_conf             9889999899999987999999999827975899989743033078899999999999997599-579668999998999


Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999999842889
Q gi|254780200|r  329 DLLEKITRRELMGWI  343 (343)
Q Consensus       329 ~~La~lv~~~l~gw~  343 (343)
                      ++|+++|+++|+.|+
T Consensus       296 ~~La~lV~~~l~~~~  310 (316)
T PRK12435        296 DCLATIVSRKMKEIV  310 (316)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999986431


No 6  
>KOG1321 consensus
Probab=100.00  E-value=0  Score=623.54  Aligned_cols=322  Identities=26%  Similarity=0.462  Sum_probs=301.9

Q ss_pred             CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             98777867999971788899998899999998748954411786888998766651257478899999870778874045
Q gi|254780200|r   12 PKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESIL   91 (343)
Q Consensus        12 p~~~~~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL   91 (343)
                      +...++||||||||||||++.+  ||.+||.++|.|+++|++|+.+ |.-|+.||+.+|.+|+++.|+.|    |||||+
T Consensus        32 ~~~~k~ktgilllNmGGP~~ld--dV~~FL~rLfaD~DiI~Lp~~~-Q~~lakfIak~RtPKvqe~Y~~I----GGGSPi  104 (395)
T KOG1321          32 VAQKKPKTGILLLNMGGPETLD--DVQDFLYRLFADPDIIPLPAFL-QKTLAKFIAKRRTPKVQEQYREI----GGGSPI  104 (395)
T ss_pred             CCCCCCCCEEEEECCCCCCCHH--HHHHHHHHHHCCCCEEECCHHH-HHHHHHHHHHHCCCHHHHHHHHC----CCCCCH
T ss_conf             2236887238997179986221--5788999983488701077888-75688788875283377777750----699800


Q ss_pred             HHHHHHHHHHHHHHHHCCC----CCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7775999999998652247----843001121045424789999987099658996317111001468999999999987
Q gi|254780200|r   92 RTHTRDQATNLAKRLESIS----SIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIH  167 (343)
Q Consensus        92 ~~~t~~qa~~L~~~L~~~~----~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~  167 (343)
                      +.+|+.|++.+.+.|++..    ...+++|||||+|+.|+++++++++|++++|++|+|||||++||||+++.+++.+.+
T Consensus       105 r~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~  184 (395)
T KOG1321         105 RKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFRE  184 (395)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             67888889999999974195547765346665248564999999975276047863158750231576429999999984


Q ss_pred             HCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf             179--9864213345578006899999999999733899---86699983367502676279988899999999999726
Q gi|254780200|r  168 MRW--SPSLRTVPPYYEDSDYISALAQSIREHFESIQWT---PEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLS  242 (343)
Q Consensus       168 ~~~--~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~---~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~  242 (343)
                      .+.  ..++.+|++|+.+++||++++++|.+.|+.+..+   +..++|||||+|++++.+||||+.|+.+|+++||++|+
T Consensus       185 ~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn~GDpY~~Ei~atv~~iMeeL~  264 (395)
T KOG1321         185 DGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVNAGDPYPAEIAATVDLIMEELK  264 (395)
T ss_pred             CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             47656881586054455516999999999999974687555647999944778478774589757899999999999961


Q ss_pred             CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             67567047862257776544302689999899769983999744054221255888758999999975997589816898
Q gi|254780200|r  243 WPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLN  322 (343)
Q Consensus       243 ~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN  322 (343)
                      .. |+|.++||||+||.+||+|+|+++++.|.++|.||++.|||+|+|||+|||+|||+||+|++.+.|++++.|+++||
T Consensus       265 ~~-N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~ey~e~a~k~gve~~~Rv~sln  343 (395)
T KOG1321         265 YK-NPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIEYIEEALKKGVENWKRVESLN  343 (395)
T ss_pred             CC-CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
T ss_conf             37-93024343036775445600589999987612244589752165677878998418999999997654010146889


Q ss_pred             CCHHHHHHHHHHHHHHHCC
Q ss_conf             7989999999999998428
Q gi|254780200|r  323 SSNLSIDLLEKITRRELMG  341 (343)
Q Consensus       323 ~~~~fi~~La~lv~~~l~g  341 (343)
                      ++|.||++|||+|.+||+.
T Consensus       344 ~~p~fI~~lADlV~ehL~s  362 (395)
T KOG1321         344 GNPTFIEGLADLVAEHLKS  362 (395)
T ss_pred             CCCCHHHHHHHHHHHHHHH
T ss_conf             9821899899999986213


No 7  
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00  E-value=1.4e-45  Score=338.00  Aligned_cols=158  Identities=45%  Similarity=0.746  Sum_probs=150.9

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             79999717888999988999999987489544117868889987666512574788999998707788740457775999
Q gi|254780200|r   19 IGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQ   98 (343)
Q Consensus        19 ~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~q   98 (343)
                      +||||+|||||++++  +|++||++||+|++||++|.++| ++|+++|+++|+++++++|++||    |||||+.+|+.|
T Consensus         1 ~~VlL~n~G~P~~~~--~v~~yL~~~l~d~~vi~~p~~~~-~~l~~~I~~~R~~k~~~~Y~~i~----~~SPL~~~t~~q   73 (159)
T cd03411           1 TAVLLVNLGGPESLE--DVRPFLKNFLSDRRVIELPRPLR-PILAGIILPRRPPKVAKNYKKIG----GGSPLNEITRAQ   73 (159)
T ss_pred             CEEEEEECCCCCCHH--HHHHHHHHHCCCCCCCCCCCHHH-HHHHHHCCHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_conf             979999689989869--99999999858986310761268-99888807000699999999826----988789999999


Q ss_pred             HHHHHHHHHCCC-CCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999998652247-8430011210454247899999870996589963171110014689999999999871799864213
Q gi|254780200|r   99 ATNLAKRLESIS-SIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTV  177 (343)
Q Consensus        99 a~~L~~~L~~~~-~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I  177 (343)
                      +++|+++|++.+ +++|++|||||+|+++|++++|+++|+++|+++|||||||++||||+++++.+++++.++.+++++|
T Consensus        74 ~~~L~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lPlyPqyS~sTt~S~~~~~~~~~~~~~~~~~i~~I  153 (159)
T cd03411          74 AEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRPAPELRVI  153 (159)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99999998732899518987432799899999999854888499997987413144899999999999964899848982


Q ss_pred             CCCCCC
Q ss_conf             345578
Q gi|254780200|r  178 PPYYED  183 (343)
Q Consensus       178 ~~~~~~  183 (343)
                      ++||||
T Consensus       154 ~~f~d~  159 (159)
T cd03411         154 RSFYDH  159 (159)
T ss_pred             CCCCCC
T ss_conf             886788


No 8  
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00  E-value=3.9e-43  Score=320.87  Aligned_cols=135  Identities=44%  Similarity=0.761  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf             99999999999733899866999833675026762799888999999999997266756704786225777654430268
Q gi|254780200|r  188 SALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTD  267 (343)
Q Consensus       188 ~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~  267 (343)
                      ++++++|++++++.+.++++|||||||||++++++||||.+||++|+++|+++|+.+.++|.++||||+||++||+|+|+
T Consensus         1 ~a~a~~I~~~l~~~~~~~~~llfS~HglP~~~~~~gd~Y~~q~~~t~~~i~~~l~~~~~~~~~~~QS~~g~~~Wl~P~~~   80 (135)
T cd00419           1 EALADHIREALAELPREKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTD   80 (135)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCCCCCHH
T ss_conf             94799999999967998878999726475877638997799999999999998299810168998648888887899879


Q ss_pred             HHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             9999899769983999744054221255888758999999975997589816898
Q gi|254780200|r  268 KTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLN  322 (343)
Q Consensus       268 ~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN  322 (343)
                      ++|++|+++|+++|+|+||||++||+|||||||+|+++.|.++||++|.|+||||
T Consensus        81 ~~l~~l~~~G~~~v~v~p~gF~sD~lETl~eld~e~~~~~~~~Gg~~~~~vp~lN  135 (135)
T cd00419          81 DALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN  135 (135)
T ss_pred             HHHHHHHHCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             9999998669971999898530365144888789999999983995588728999


No 9  
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.28  E-value=9.4e-12  Score=102.45  Aligned_cols=87  Identities=31%  Similarity=0.390  Sum_probs=78.7

Q ss_pred             EEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf             99983367502676279988899999999999726675670478622577765443026899998997699839997440
Q gi|254780200|r  208 LLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPG  287 (343)
Q Consensus       208 llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~g  287 (343)
                      ||++.||.|..     |||..+++++++.|+++++  +.++.+||||.      ++|++++++++|.++|+++|+++|..
T Consensus         2 iL~v~hGs~~~-----dpy~~~ie~~a~~i~~~~~--~~~v~~~f~e~------~~P~i~eai~~l~~~G~~~ivvvP~~   68 (101)
T cd03409           2 LLVVGHGSPYK-----DPYKKDIEAQAHNLAESLP--DFPYYVGFQSG------LGPDTEEAIRELAEEGYQRVVIVPLA   68 (101)
T ss_pred             EEEEECCCCCC-----CCHHHHHHHHHHHHHHHCC--CCCEEHHHHHH------CCCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             69996699976-----6608999999999998879--98241437977------19999999999997698679998643


Q ss_pred             HHHCCHHHHHHHHHHHHHHHH
Q ss_conf             542212558887589999999
Q gi|254780200|r  288 FSSDCLETSYEIAHEAKEIFV  308 (343)
Q Consensus       288 FvsD~lETl~Eidie~~e~~~  308 (343)
                      |+ +|.||++||+.|......
T Consensus        69 l~-~g~h~~~Dip~el~~~~~   88 (101)
T cd03409          69 PV-SGDEVFYDIDSEIGLVRK   88 (101)
T ss_pred             EE-CCHHHHHHHHHHHHHHHH
T ss_conf             00-560577330799978888


No 10 
>pfam06180 CbiK Cobalt chelatase (CbiK). This family consists of several bacterial cobalt chelatase (CbiK) proteins (EC:4.99.1.-).
Probab=99.06  E-value=7.8e-07  Score=68.24  Aligned_cols=193  Identities=12%  Similarity=0.192  Sum_probs=134.5

Q ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             5424789999987099658996317111001468999999999987179-986421334557800689999999999973
Q gi|254780200|r  122 KPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRW-SPSLRTVPPYYEDSDYISALAQSIREHFES  200 (343)
Q Consensus       122 ~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~-~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~  200 (343)
                      -++..++|++|+++|+++|++.||+     ..-|.-++.+.+.+.+... ..++.+-.+.-.++.=++..++.|.+.+..
T Consensus        57 i~~p~eaL~~L~~~G~~~V~VQplh-----ii~G~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~~D~~~v~~al~~~~~~  131 (256)
T pfam06180        57 IDTPLQALNKLADQGYEEVIVQPLH-----IIPGEEYEKLKREVNKFSPDFKRIKLGRPLLDYPEDYEEVVEALKDQIPP  131 (256)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECC-----EECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             7999999999998799889992362-----43747699999999997531884997315668868999999999984533


Q ss_pred             CCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             38998669998336750267627998889999999999972667567047862257776544302689999899769983
Q gi|254780200|r  201 IQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKS  280 (343)
Q Consensus       201 ~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~  280 (343)
                      .. +.+.+||-.||-+-.    +    ...+...+......+.++  +.++=   +  +-|  |++++++++|.+.|+|+
T Consensus       132 ~~-~~~a~VlmGHGt~h~----a----~~~Y~~l~~~l~~~~~~~--v~vgt---v--Eg~--P~~e~vl~~L~~~g~k~  193 (256)
T pfam06180       132 LR-KDEALVFMGHGTDHH----S----NAVYACLDHVMRNYPFPN--VFVGT---V--EGY--PGVDDVIAELRKKGITE  193 (256)
T ss_pred             CC-CCCEEEEECCCCCCC----C----CHHHHHHHHHHHHCCCCC--EEEEE---E--CCC--CCHHHHHHHHHHCCCCE
T ss_conf             36-898699981898985----3----089999999999569998--79999---6--897--99999999999769985


Q ss_pred             EEEECCHHHH-CCHHHHHHHHH----HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9997440542-21255888758----99999997599758981689879899999999999984
Q gi|254780200|r  281 LAIITPGFSS-DCLETSYEIAH----EAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRREL  339 (343)
Q Consensus       281 v~v~p~gFvs-D~lETl~Eidi----e~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~~~l  339 (343)
                      |.++|.=+|+ ||-  ..|+.-    --+..+.++|..--.....|...|.|.+...+-+++.+
T Consensus       194 V~L~PfM~VAGdHa--~nDmaGde~dSWks~L~~~G~~v~~~l~GLGe~~~i~~i~i~hl~~a~  255 (256)
T pfam06180       194 VTLMPLMLVAGDHA--KNDMASDEEDSWKNRFEAAGIKVEIILSGLGEIDEIRSIFIDHIKDAI  255 (256)
T ss_pred             EEEECHHHHCHHHH--HHCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             99965076332515--432368994159999997798667985367589999999999999984


No 11 
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=98.61  E-value=4.2e-05  Score=56.14  Aligned_cols=226  Identities=19%  Similarity=0.178  Sum_probs=136.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCC-CCCHHH-HHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             7404577759999999986522478-430011-21045424789999987099658996317111001468999999999
Q gi|254780200|r   87 NESILRTHTRDQATNLAKRLESISS-IVVDWA-MRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQE  164 (343)
Q Consensus        87 g~SPL~~~t~~qa~~L~~~L~~~~~-~~V~~a-mry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~  164 (343)
                      -||++....+... ++.+.+.+..+ -.|..| |-..+|+++++++.+..+|+++|+++|||=....-|+--.-.++...
T Consensus        10 HGsr~p~~~~~~~-~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DIP~~L~~~   88 (245)
T COG2138          10 HGSRLPRGREVAE-AIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDIPAELGLA   88 (245)
T ss_pred             CCCCCCCHHHHHH-HHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEHHHCCCCHHHCCCHHHHHHH
T ss_conf             4888862789999-999999864599630247877538998999999986699819994442245731101518999876


Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHH--HHHHHHHHHHHHHC
Q ss_conf             9871799864213345578006899999999999733899866999833675026762799888--99999999999726
Q gi|254780200|r  165 LIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGC--HCHKTARLLKEFLS  242 (343)
Q Consensus       165 l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~--q~~~t~~~i~~~l~  242 (343)
                      -.+   .+...+. ++-.+|.-.+.+.+++.+.......+-+.+++..+|        .+++..  ..+..++.+.+.. 
T Consensus        89 ~~~---~~~~~~~-p~G~~~~~~~~~~~r~~~~~~~~~~~~~~vv~~~~G--------s~~~~~~~~~~~va~~l~~~~-  155 (245)
T COG2138          89 RQA---HPQVDLS-PLGTHPAVLDLLGQRLEDAGADEADDAERVVLEPRG--------SSDPIANAAVYRVARLLGEGT-  155 (245)
T ss_pred             HHC---CCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC--------CCCCCCHHHHHHHHHHHHHCC-
T ss_conf             635---8965566-567754799999999887305643442159996058--------776431257899999997066-


Q ss_pred             CCCCCCE---EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             6756704---7862257776544302689999899769983999744054221255888758999999975997589816
Q gi|254780200|r  243 WPDDRFK---ICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVP  319 (343)
Q Consensus       243 ~~~~~~~---l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp  319 (343)
                         +.|.   .+|+--  +    +|.+.+....+.   .+++ ++-|-|+.|.+.|.+....+.  ...-...-.....+
T Consensus       156 ---~~~~~~~~~~~~~--~----~~~l~~~~~~~~---~~~~-vv~P~fL~~G~l~~~~~~~~~--~~~~~~~~~i~~~~  220 (245)
T COG2138         156 ---ASWKAVITLFTGV--A----EPGLAGETARLR---YRRV-VVLPYFLFDGLLTDRIRPEVE--LRLAVPEGEIALAR  220 (245)
T ss_pred             ---CCCEEEEEEECCC--C----CCCHHHHHHHCC---CCCE-EEEEHHHHCCHHHHHHHHHHH--HHHCCCCCCEEECC
T ss_conf             ---7731232311046--6----765243333114---6717-997766747535654577664--22036775257657


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8987989999999999998428
Q gi|254780200|r  320 CLNSSNLSIDLLEKITRRELMG  341 (343)
Q Consensus       320 ~lN~~~~fi~~La~lv~~~l~g  341 (343)
                      -++.+|...+++.+.+.+...+
T Consensus       221 ~lG~~p~l~~~~~~r~~~~~~~  242 (245)
T COG2138         221 PLGTHPRLADAVLDRVREARAG  242 (245)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             5788878999999999998752


No 12 
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.46  E-value=2.4e-06  Score=64.77  Aligned_cols=83  Identities=14%  Similarity=0.283  Sum_probs=55.6

Q ss_pred             CCCHHHH-HCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH-----------HHCCCCCCCCCCC
Q ss_conf             4300112-104542478999998709965899631711100146899999999998-----------7179986421334
Q gi|254780200|r  112 IVVDWAM-RYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI-----------HMRWSPSLRTVPP  179 (343)
Q Consensus       112 ~~V~~am-ry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~-----------~~~~~~~~~~I~~  179 (343)
                      ..|+.|+ -..+|+++++++++.++|+++|+++|+|=.-..-+.    +.+-+.+.           ......++++-++
T Consensus        36 ~~V~~afle~~~P~i~~~~~~l~~~G~~~ivvvP~fL~~G~H~~----~DIP~~l~~~~~~~~~~~~~~~~~v~i~~~~p  111 (130)
T PRK00923         36 YIVEVGFMEFNEPTIPEALKKFAGTGVDKIIVVPVFLAHGVHTK----RDIPKILGLDEGEKEGEIEEDGKDVELVYAEP  111 (130)
T ss_pred             CEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHCCCCCCC----HHHHHHHHHHHHHCCCCHHHCCCCEEEEECCC
T ss_conf             82988776157898999999999669988999863016682422----00188987767516542221388527997788


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             5578006899999999999
Q gi|254780200|r  180 YYEDSDYISALAQSIREHF  198 (343)
Q Consensus       180 ~~~~p~yI~a~~~~I~~~l  198 (343)
                      ...||..++.+.++++++|
T Consensus       112 lG~~p~l~dvl~~R~~EAL  130 (130)
T PRK00923        112 IGADPRIADIVLDRANEAL  130 (130)
T ss_pred             CCCCHHHHHHHHHHHHHHC
T ss_conf             8899799999999999759


No 13 
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=98.29  E-value=0.0001  Score=53.53  Aligned_cols=156  Identities=21%  Similarity=0.314  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHH
Q ss_conf             99999999987179986421334557800689999----99999997338998669998336750267627998889999
Q gi|254780200|r  157 AQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALA----QSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHK  232 (343)
Q Consensus       157 ~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~----~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~  232 (343)
                      ..+++..-+......+.+.-++.+.-.| .-..++    +.++...+...+.                   .|=....++
T Consensus        18 ~~e~v~~yL~~~~~d~~v~~~~~~~~~~-l~~~I~~~R~~~~~~~Y~~igg~-------------------sPL~~~T~~   77 (320)
T COG0276          18 TLEDVRPYLKNFLSDRRVIELPRPLWYP-LAGIILPLRLKKVAKNYESIGGK-------------------SPLNVITRA   77 (320)
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHCCC-------------------CCCHHHHHH
T ss_conf             7789999999983699877762455543-54331010018899999984688-------------------943999999


Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC--HHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf             999999972667567047862257776544302689999899769983999744--054221255888758999999975
Q gi|254780200|r  233 TARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITP--GFSSDCLETSYEIAHEAKEIFVNG  310 (343)
Q Consensus       233 t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~--gFvsD~lETl~Eidie~~e~~~e~  310 (343)
                      -++++.++|+.+  ++.+.+--|.|     .|++++++++|.++|+++++++|-  -|.+--..+-.+  --.+.+-...
T Consensus        78 q~~~L~~~L~~~--~~~V~~amry~-----~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~--~~~~al~~~~  148 (320)
T COG0276          78 QAAALEERLDLP--DFKVYLAMRYG-----PPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVD--ELARALKELR  148 (320)
T ss_pred             HHHHHHHHHCCC--CCCEEEEECCC-----CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH--HHHHHHHHCC
T ss_conf             999999973799--86079763478-----98689999999971987599997776302301899999--9999998537


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             9975898168987989999999999998428
Q gi|254780200|r  311 GGEKFTQVPCLNSSNLSIDLLEKITRRELMG  341 (343)
Q Consensus       311 Gg~~~~rvp~lN~~~~fi~~La~lv~~~l~g  341 (343)
                      +...+..|++.-++|.||+++++.|+++++.
T Consensus       149 ~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~  179 (320)
T COG0276         149 GQPKISTIPDYYDEPLYIEALADSIREKLAK  179 (320)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8986688167557868999999999999974


No 14 
>PRK02395 hypothetical protein; Provisional
Probab=98.20  E-value=3e-05  Score=57.17  Aligned_cols=205  Identities=15%  Similarity=0.138  Sum_probs=132.8

Q ss_pred             CCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH---------HHHHCCCCCCCCCCCCCCC
Q ss_conf             3001121045424789999987099658996317111001468999999999---------9871799864213345578
Q gi|254780200|r  113 VVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQE---------LIHMRWSPSLRTVPPYYED  183 (343)
Q Consensus       113 ~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~---------l~~~~~~~~~~~I~~~~~~  183 (343)
                      +|..|+---+|++.++|+.+.   .++++++|||=-.-+.|-.-+=+++.=.         +.......++++-.+...|
T Consensus        37 eV~~~f~keeP~l~~vL~~v~---a~~V~VVPlfis~GYfT~~vIPreLgL~~~~~~~~~g~~~~~~g~~i~Y~~PvGth  113 (284)
T PRK02395         37 EVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFISEGYFTETVIPRELGLEHQGPVPTGGLVAVDGGKRVHYTGPVGTH  113 (284)
T ss_pred             HHHHHHHHCCCCHHHHHHHHC---CCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCEEEECCCCCCC
T ss_conf             899998725998899998706---78479974430454001440658656776777787773145089338965677888


Q ss_pred             CHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
Q ss_conf             00689999999999973389-98669998336750267627998889999999999972667567047862257776544
Q gi|254780200|r  184 SDYISALAQSIREHFESIQW-TPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCL  262 (343)
Q Consensus       184 p~yI~a~~~~I~~~l~~~~~-~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL  262 (343)
                      |..-+.++.+.++.+.+... ....|+...||.-..     -.-..-++..+++|+++=.  .......|-..       
T Consensus       114 p~m~dvi~~RA~~v~~~~~~~~~t~L~lvgHGT~rn-----~ns~~ai~~~a~~ire~~~--FaEV~~~Fmde-------  179 (284)
T PRK02395        114 PGMADVIAQRARDVTGDPEDADDTALLLVGHGTERN-----ENSAKAIYYHADRLRERGR--FAEVEAVFLDE-------  179 (284)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-----CCHHHHHHHHHHHHHHCCC--CHHHHHHHHCC-------
T ss_conf             237899999999852788888773599984577888-----6537889999999997487--18888876305-------


Q ss_pred             CHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHH-----HHH----CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             30268999989976998399974405422125588875899999-----997----599758981689879899999999
Q gi|254780200|r  263 EPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEI-----FVN----GGGEKFTQVPCLNSSNLSIDLLEK  333 (343)
Q Consensus       263 ~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~-----~~e----~Gg~~~~rvp~lN~~~~fi~~La~  333 (343)
                      +|.+.+.-+.+.   .++|+++| =|++|.+-|.+||-...--.     +..    .-|....+...++++|...+.+.+
T Consensus       180 eP~v~~~~e~~~---~~~VVvVP-fFiAdG~Ht~edIP~~lGlt~~~~~~~~~P~~~~g~~i~ya~~vGt~p~~advile  255 (284)
T PRK02395        180 EPEVDDWPDLVE---ADDVVVVP-LFVSEGWHTQEDIPEDMGLTDDYRTGPDSPTAVDGHTIWYAGPVGTEPLMADVILE  255 (284)
T ss_pred             CCCCCCHHHHCC---CCCEEEEE-EEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             875232677617---88679996-37526753344574651888787547889866367058971366775348999999


Q ss_pred             HHHHH
Q ss_conf             99998
Q gi|254780200|r  334 ITRRE  338 (343)
Q Consensus       334 lv~~~  338 (343)
                      ++.+.
T Consensus       256 ~a~~a  260 (284)
T PRK02395        256 LAADA  260 (284)
T ss_pred             HHHHC
T ss_conf             99881


No 15 
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.17  E-value=0.00016  Score=52.13  Aligned_cols=115  Identities=20%  Similarity=0.264  Sum_probs=61.3

Q ss_pred             EEEEEECCCCHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             6999833675026762799-888999999999997266756704786225777654430268999989976998399974
Q gi|254780200|r  207 MLLVSFHQMPVSYLLKGDP-YGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT  285 (343)
Q Consensus       207 ~llfSaHglP~~~~~~gDp-Y~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p  285 (343)
                      .||+-+||=-       || ...++.+.++.+.++++..  ....||-..      -+|++.+.++++.++|.++|+|+|
T Consensus         2 avllvgHGSr-------~p~a~~~~~~la~~l~~~~~~~--~v~~~fle~------~~P~l~e~l~~l~~~G~~~ivvvP   66 (117)
T cd03414           2 AVVLVGRGSS-------DPDANADVAKIARLLEEGTGFA--RVETAFAAA------TRPSLPEALERLRALGARRVVVLP   66 (117)
T ss_pred             EEEEEECCCC-------CHHHHHHHHHHHHHHHHHCCCC--EEEEEEECC------CCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             8999958999-------8789999999999999768998--188877536------799899999999976997599976


Q ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             405422125588875899999997599758981689879899999999999984
Q gi|254780200|r  286 PGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRREL  339 (343)
Q Consensus       286 ~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~~~l  339 (343)
                      . |..... -..++.-+..+.. +.-+.++...+.|+.||..++.+++.+++.|
T Consensus        67 ~-fL~~G~-~~~~i~~~~~~~~-~~p~~~i~~~~pLG~~p~l~~~l~~Ri~eal  117 (117)
T cd03414          67 Y-LLFTGV-LMDRIEEQVAELA-AEPGIEFVLAPPLGPHPELAEALLERVREAL  117 (117)
T ss_pred             H-HHCCCC-HHHHHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf             2-312784-2766799999998-4889718988889899899999999999769


No 16 
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.11  E-value=0.0002  Score=51.46  Aligned_cols=119  Identities=15%  Similarity=0.131  Sum_probs=85.2

Q ss_pred             CEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             66999833675026762799888999999999997266756704786225777654430268999989976998399974
Q gi|254780200|r  206 EMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT  285 (343)
Q Consensus       206 ~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p  285 (343)
                      ..||+-+||-...      .........++.++++.+.  .....||-..      -+|++.+.++++.++|+++|+|+|
T Consensus         4 ~alllvgHGSr~~------~~~~~~~~~a~~l~~~~~~--~~V~~afle~------~~P~i~~~~~~l~~~G~~~ivvvP   69 (130)
T PRK00923          4 IGLLLVGHGSRLP------YNKEVVTEIAEKIKEKFPD--YIVEVGFMEF------NEPTIPEALKKFAGTGVDKIIVVP   69 (130)
T ss_pred             EEEEEEECCCCCH------HHHHHHHHHHHHHHHHCCC--CEEEEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             6999997899976------7899999999999985899--8298877615------789899999999966998899986


Q ss_pred             CHHHHCCHHHHHHHHHHHHH-------HHHHCC-CCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             40542212558887589999-------999759-9758981689879899999999999984
Q gi|254780200|r  286 PGFSSDCLETSYEIAHEAKE-------IFVNGG-GEKFTQVPCLNSSNLSIDLLEKITRREL  339 (343)
Q Consensus       286 ~gFvsD~lETl~Eidie~~e-------~~~e~G-g~~~~rvp~lN~~~~fi~~La~lv~~~l  339 (343)
                       -|.++..=+..||=.+...       .+.+.+ +..+.+.+.+++||..++.+++.+++.|
T Consensus        70 -~fL~~G~H~~~DIP~~l~~~~~~~~~~~~~~~~~v~i~~~~plG~~p~l~dvl~~R~~EAL  130 (130)
T PRK00923         70 -VFLAHGVHTKRDIPKILGLDEGEKEGEIEEDGKDVELVYAEPIGADPRIADIVLDRANEAL  130 (130)
T ss_pred             -HHHCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf             -3016682422001889877675165422213885279977888899799999999999759


No 17 
>PRK12435 ferrochelatase; Provisional
Probab=98.09  E-value=0.0002  Score=51.47  Aligned_cols=24  Identities=17%  Similarity=0.211  Sum_probs=11.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             334557800689999999999973
Q gi|254780200|r  177 VPPYYEDSDYISALAQSIREHFES  200 (343)
Q Consensus       177 I~~~~~~p~yI~a~~~~I~~~l~~  200 (343)
                      ++...++|.||+++++.|.+.+++
T Consensus       285 vp~lN~~p~fI~~La~lV~~~l~~  308 (316)
T PRK12435        285 PNMPNAQSTFIDCLATIVSRKMKE  308 (316)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             689999989999999999999864


No 18 
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=98.08  E-value=2e-05  Score=58.37  Aligned_cols=55  Identities=33%  Similarity=0.452  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHC-CCCCHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf             577759999999986522478430011210-4542478999998709965899631711
Q gi|254780200|r   91 LRTHTRDQATNLAKRLESISSIVVDWAMRY-GKPSVKEIINNLREEGCDRLLIFPLYPQ  148 (343)
Q Consensus        91 L~~~t~~qa~~L~~~L~~~~~~~V~~amry-~~P~i~~~l~~l~~~g~~~ii~lPLyPq  148 (343)
                      -+...+++++.++++++   +.+|+.|+.. ..|++++++++|.++|+++|+++|+|..
T Consensus        15 y~~~ie~~a~~i~~~~~---~~~v~~~f~e~~~P~i~eai~~l~~~G~~~ivvvP~~l~   70 (101)
T cd03409          15 YKKDIEAQAHNLAESLP---DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV   70 (101)
T ss_pred             HHHHHHHHHHHHHHHCC---CCCEEHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf             08999999999998879---982414379771999999999999769867999864300


No 19 
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.94  E-value=0.00047  Score=48.88  Aligned_cols=77  Identities=17%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH---HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             454247899999870996589963171110014689999---99999987179986421334557800689999999999
Q gi|254780200|r  121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQD---KVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREH  197 (343)
Q Consensus       121 ~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~---~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~  197 (343)
                      -.|++.+++++|.++|+++|+++|.  -|.+=...+.+|   +..+...+. ..-++..|+...++|.||+++++.|+++
T Consensus       242 L~P~t~~~l~~l~~~G~k~V~v~p~--gFvsD~lETl~Eidie~~e~~~~~-G~~~~~~vp~lN~~~~fi~~L~~lv~~~  318 (325)
T PRK00035        242 LEPYTDDTLEELAEKGVKKIVVVPP--GFVSDHLETLEEIDIEYREIAEEA-GGKEYRRIPCLNDSPEFIEALADLVLER  318 (325)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             8875899999988579975999898--204534465999889999999985-9955898079999989999999999998


Q ss_pred             HHH
Q ss_conf             973
Q gi|254780200|r  198 FES  200 (343)
Q Consensus       198 l~~  200 (343)
                      ++.
T Consensus       319 l~~  321 (325)
T PRK00035        319 LQG  321 (325)
T ss_pred             HCC
T ss_conf             569


No 20 
>pfam00762 Ferrochelatase Ferrochelatase.
Probab=97.90  E-value=0.00045  Score=49.03  Aligned_cols=109  Identities=16%  Similarity=0.253  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC--HHHHCCHHHHHHHHH
Q ss_conf             998889999999999972667567047862257776544302689999899769983999744--054221255888758
Q gi|254780200|r  224 DPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITP--GFSSDCLETSYEIAH  301 (343)
Q Consensus       224 DpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~--gFvsD~lETl~Eidi  301 (343)
                      .|=......-++++.++|+-...++.+.+--|.|+     |+++++++++.++|+++++++|.  -|.+=...+..|-  
T Consensus        63 SPl~~~t~~q~~~L~~~l~~~~~~~~V~~amry~~-----P~i~~~l~~l~~~g~~~ii~lplyPqyS~~Tt~s~~~~--  135 (312)
T pfam00762        63 SPLNVITRAQAEALQKRLGERGADVKVYLAMRYGP-----PSIEDALEELKADGVDRIVVLPLYPQYSASTTGSYLDE--  135 (312)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-----CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH--
T ss_conf             85899999999999999871499953898855689-----97788999999659876999977754230307699999--


Q ss_pred             HHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99999997-5997589816898798999999999999842
Q gi|254780200|r  302 EAKEIFVN-GGGEKFTQVPCLNSSNLSIDLLEKITRRELM  340 (343)
Q Consensus       302 e~~e~~~e-~Gg~~~~rvp~lN~~~~fi~~La~lv~~~l~  340 (343)
                       ..+...+ .....+..|+...++|.||+++++.|+++++
T Consensus       136 -~~~~~~~~~~~~~~~~I~~~~~~p~yi~a~~~~I~~~l~  174 (312)
T pfam00762       136 -LARALKKGRPAPEVRVIRRYYDHPGYIEALADSIREALA  174 (312)
T ss_pred             -HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             -999998658998512706757898999999999999998


No 21 
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=97.86  E-value=0.00019  Score=51.61  Aligned_cols=92  Identities=22%  Similarity=0.362  Sum_probs=64.5

Q ss_pred             HHHHHHHHHCCCCCCCHHHHH-CCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCC
Q ss_conf             999998652247843001121-04542478999998709965899631711100146899999999998717--998642
Q gi|254780200|r   99 ATNLAKRLESISSIVVDWAMR-YGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR--WSPSLR  175 (343)
Q Consensus        99 a~~L~~~L~~~~~~~V~~amr-y~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~--~~~~~~  175 (343)
                      ++.++++++   ...|+.|+- ...|+++++++++.+.|+++|+++|+|= ++    |...+.+.+++.+..  ...++.
T Consensus        23 a~~l~~~~~---~~~v~~~fle~~~P~l~e~l~~l~~~G~~~ivvvP~fL-~~----G~~~~~i~~~~~~~~~~p~~~i~   94 (117)
T cd03414          23 ARLLEEGTG---FARVETAFAAATRPSLPEALERLRALGARRVVVLPYLL-FT----GVLMDRIEEQVAELAAEPGIEFV   94 (117)
T ss_pred             HHHHHHHCC---CCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHH-CC----CCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999997689---98188877536799899999999976997599976231-27----84276679999999848897189


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             13345578006899999999999
Q gi|254780200|r  176 TVPPYYEDSDYISALAQSIREHF  198 (343)
Q Consensus       176 ~I~~~~~~p~yI~a~~~~I~~~l  198 (343)
                      +-++...||...+++.+++++++
T Consensus        95 ~~~pLG~~p~l~~~l~~Ri~eal  117 (117)
T cd03414          95 LAPPLGPHPELAEALLERVREAL  117 (117)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHC
T ss_conf             88889899899999999999769


No 22 
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=97.85  E-value=0.0041  Score=42.30  Aligned_cols=205  Identities=17%  Similarity=0.249  Sum_probs=128.4

Q ss_pred             HHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCC-CC
Q ss_conf             99865224784300112104542478999998709965899631711100146899999999998717998-64213-34
Q gi|254780200|r  102 LAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSP-SLRTV-PP  179 (343)
Q Consensus       102 L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~-~~~~I-~~  179 (343)
                      +-++|.++++..      ...|  -.+|.+|+++|.+++++=||+=     --|--++.+-+...+..... ++..- +-
T Consensus        47 IIkkLK~rdgi~------~dTP--~~aL~klk~~gy~eviiQ~lhi-----IpG~EyEklvr~V~~~~~dF~~lkig~Pl  113 (265)
T COG4822          47 IIKKLKERDGID------FDTP--IQALNKLKDQGYEEVIIQPLHI-----IPGIEYEKLVREVNKYSNDFKRLKIGRPL  113 (265)
T ss_pred             HHHHHHHHCCCC------CCCH--HHHHHHHHHCCCHHEEEEEEEE-----CCCHHHHHHHHHHHHHHHHHHEEECCCCE
T ss_conf             999988626942------2888--9999999971513125333221-----47267999999999876330314617731


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             55780068999999999997338998669998336750267627998889999999999972667567047862257776
Q gi|254780200|r  180 YYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRI  259 (343)
Q Consensus       180 ~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~  259 (343)
                      .|....|- -+.+.|++..... .+.+.++|--||.--        -...|+..-+.+...-|..+  ..+|   .+  .
T Consensus       114 Ly~k~DYe-~~v~aik~~~ppl-~k~e~~vlmgHGt~h--------~s~~~YacLd~~~~~~~f~~--v~v~---~v--e  176 (265)
T COG4822         114 LYYKNDYE-ICVEAIKDQIPPL-NKDEILVLMGHGTDH--------HSNAAYACLDHVLDEYGFDN--VFVA---AV--E  176 (265)
T ss_pred             EECHHHHH-HHHHHHHHHCCCC-CCCEEEEEEECCCCC--------CHHHHHHHHHHHHHHCCCCC--EEEE---EE--C
T ss_conf             54010599-9999999766886-767279998358875--------17789999999998648885--6999---82--4


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHH----HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             54430268999989976998399974405422125588875----89999999759975898168987989999999999
Q gi|254780200|r  260 KCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA----HEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKIT  335 (343)
Q Consensus       260 ~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eid----ie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv  335 (343)
                      -.  |.++++++.|.+.|++.|-++|.=||+-.--+ -|+.    ...++.+..+|.+.-.+.--|+..|+|-+...+-+
T Consensus       177 ~y--P~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~-nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~Hi  253 (265)
T COG4822         177 GY--PLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAK-NDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFIDHI  253 (265)
T ss_pred             CC--CCHHHHHHHHHHCCCCEEEEEEEEEEECHHHH-HHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             78--75899999999768764888656886040223-2111263478999998679546887605777678999999999


Q ss_pred             HHHH
Q ss_conf             9984
Q gi|254780200|r  336 RREL  339 (343)
Q Consensus       336 ~~~l  339 (343)
                      +..+
T Consensus       254 k~ai  257 (265)
T COG4822         254 KDAI  257 (265)
T ss_pred             HHHH
T ss_conf             9998


No 23 
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=97.48  E-value=0.0014  Score=45.58  Aligned_cols=114  Identities=18%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             EEEEEECCCCHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             69998336750267627998-88999999999997266756704786225777654430268999989976998399974
Q gi|254780200|r  207 MLLVSFHQMPVSYLLKGDPY-GCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT  285 (343)
Q Consensus       207 ~llfSaHglP~~~~~~gDpY-~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p  285 (343)
                      .+|+.+||==       ++| ....++.++.+.++++.+   ..++|      .+--+|++.+.+.++.++|+++|+|+|
T Consensus         2 AilLv~HGSR-------~~~~~e~~~~la~~v~e~~~~~---v~~~f------mElaePsi~e~l~~~v~~G~~~IiVvP   65 (125)
T cd03415           2 AIIIITHGSR-------RNTFNEDMEEWAAYLERKLGVP---VYLTY------NEYAEPNWRDLLNELLSEGYGHIIIAL   65 (125)
T ss_pred             EEEEEECCCC-------CHHHHHHHHHHHHHHHHHCCCC---EEEEE------ECCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             6999946789-------5778999999999999861995---58755------110699889999999984998199995


Q ss_pred             CHHHHCCHHHHHHHHHHHHHHH------HHCCCCE--EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             4054221255888758999999------9759975--89816898798999999999999
Q gi|254780200|r  286 PGFSSDCLETSYEIAHEAKEIF------VNGGGEK--FTQVPCLNSSNLSIDLLEKITRR  337 (343)
Q Consensus       286 ~gFvsD~lETl~Eidie~~e~~------~e~Gg~~--~~rvp~lN~~~~fi~~La~lv~~  337 (343)
                      . |.+...-+..||=-+.-..-      ...+|+.  ..+.+.+.+||.-.++|...|++
T Consensus        66 ~-FL~~G~Hv~~DIP~~lg~~~~~~~~~~~~~gk~v~~~~a~Plg~~plv~~~l~~Rv~~  124 (125)
T cd03415          66 A-FLGRGNHVARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR  124 (125)
T ss_pred             E-EECCCCCHHHCCHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf             3-2068865010265450888567435786269447899848989888899999999861


No 24 
>pfam01903 CbiX CbiX. The function of CbiX is uncertain, however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus, which suggests that it might be involved in metal chelation.
Probab=97.47  E-value=0.0023  Score=44.08  Aligned_cols=97  Identities=21%  Similarity=0.241  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHH
Q ss_conf             88999999999997266756704786225777654430268999989976998399974405422125588875899999
Q gi|254780200|r  227 GCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEI  306 (343)
Q Consensus       227 ~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~  306 (343)
                      ...+...++.+.+..+.  .....||-..      -+|++.+.+++|.++|.++|+|+|. |.+...-+..||--+..+.
T Consensus         9 ~~~~~~l~~~l~~~~~~--~~V~~~fle~------~~P~l~~~~~~l~~~G~~~ivvvP~-fL~~G~H~~~DIp~~l~~~   79 (106)
T pfam01903         9 NEDFEELARLLREKLGF--VPVEVGFLEL------AEPSLPEALRELVAQGARRIVVVPL-FLFAGGHVKRDIPEELAEA   79 (106)
T ss_pred             HHHHHHHHHHHHHHCCC--CEEEEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEEE-EEECCCCHHHHHHHHHHHH
T ss_conf             99999999999965799--8499998844------7898999999999669964999875-7405620176899999999


Q ss_pred             HHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             99759975898168987989999999
Q gi|254780200|r  307 FVNGGGEKFTQVPCLNSSNLSIDLLE  332 (343)
Q Consensus       307 ~~e~Gg~~~~rvp~lN~~~~fi~~La  332 (343)
                      ..+..+.++.+.+.|+.||..++.|+
T Consensus        80 ~~~~p~i~i~~~~~LG~~p~l~~ll~  105 (106)
T pfam01903        80 KAAHPGIEVHYGRPLGPHPLLAELLA  105 (106)
T ss_pred             HHHCCCCEEEECCCCCCCHHHHHHHC
T ss_conf             98889966997888889979999971


No 25 
>pfam01903 CbiX CbiX. The function of CbiX is uncertain, however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus, which suggests that it might be involved in metal chelation.
Probab=97.41  E-value=0.0012  Score=45.93  Aligned_cols=91  Identities=16%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             HHHHHHHCCC-CCCCHHHHH-CCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             9998652247-843001121-04542478999998709965899631711100146899999999998717998642133
Q gi|254780200|r  101 NLAKRLESIS-SIVVDWAMR-YGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVP  178 (343)
Q Consensus       101 ~L~~~L~~~~-~~~V~~amr-y~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~  178 (343)
                      .+.+.+.+.. ...|..|+- ...|++++++++|.+.|+++|+++|+|=.-..-+....-+.+.+ ++......++.+-+
T Consensus        14 ~l~~~l~~~~~~~~V~~~fle~~~P~l~~~~~~l~~~G~~~ivvvP~fL~~G~H~~~DIp~~l~~-~~~~~p~i~i~~~~   92 (106)
T pfam01903        14 ELARLLREKLGFVPVEVGFLELAEPSLPEALRELVAQGARRIVVVPLFLFAGGHVKRDIPEELAE-AKAAHPGIEVHYGR   92 (106)
T ss_pred             HHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHH-HHHHCCCCEEEECC
T ss_conf             99999996579984999988447898999999999669964999875740562017689999999-99888996699788


Q ss_pred             CCCCCCHHHHHHHH
Q ss_conf             45578006899999
Q gi|254780200|r  179 PYYEDSDYISALAQ  192 (343)
Q Consensus       179 ~~~~~p~yI~a~~~  192 (343)
                      +...||..++++++
T Consensus        93 ~LG~~p~l~~ll~~  106 (106)
T pfam01903        93 PLGPHPLLAELLAE  106 (106)
T ss_pred             CCCCCHHHHHHHCC
T ss_conf             88899799999719


No 26 
>TIGR00109 hemH ferrochelatase; InterPro: IPR001015 Synonym(s): Protoheme ferro-lyase, Iron chelatase, etc.   Ferrochelatase catalyzes the last step in heme biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protoheme , . In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane.   The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved , . The human enzyme exists as a homodimer. Each subunit contains one [Fe2S2] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [Fe2S2]cluster and in stabilisation of the homodimer. The [Fe2S2] cluster ligands are Cys196, Cys403, Cys406 and Cys411. The experiments with Co(II) binding show that His230 and Asp383 are part of the enzyme active site .   Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release .; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process.
Probab=97.13  E-value=0.01  Score=39.60  Aligned_cols=160  Identities=21%  Similarity=0.237  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCH---HHHHHHH-HHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHH
Q ss_conf             99999999987179986421334557800---6899999-9999997338998669998336750267627998889999
Q gi|254780200|r  157 AQDKVFQELIHMRWSPSLRTVPPYYEDSD---YISALAQ-SIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHK  232 (343)
Q Consensus       157 ~~~~~~~~l~~~~~~~~~~~I~~~~~~p~---yI~a~~~-~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~  232 (343)
                      ..+++.+-+....-++.+--|+.-+-.+.   +|.-+.. +|+.-++...                 .+.|.|=..-.+.
T Consensus        20 ~~e~v~~fL~~~f~Dp~~~~~~~~~~~K~~~~~I~~lR~~k~~K~Y~~iG-----------------~EGgSPL~~it~~   82 (339)
T TIGR00109        20 KLEEVERFLKQLFADPRIIDISRAKWRKLLAKMILPLRSKKIAKNYEEIG-----------------TEGGSPLLQITEQ   82 (339)
T ss_pred             CHHHHHHHHHHHCCCCCEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCHHHHHHHH
T ss_conf             51226899997517830011651200642899976521088999999727-----------------7788714689999


Q ss_pred             HHHHHHHHHC--CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC--CHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999726--6756704786225777654430268999989976998399974--40542212558887589999999
Q gi|254780200|r  233 TARLLKEFLS--WPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT--PGFSSDCLETSYEIAHEAKEIFV  308 (343)
Q Consensus       233 t~~~i~~~l~--~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p--~gFvsD~lETl~Eidie~~e~~~  308 (343)
                      -+.++.++|.  ++.   ....+-..| .+...|++.+++++|.++|+++++++|  |-|-+=-.---  .+ ++.+...
T Consensus        83 Q~~~L~~~L~~~~~~---~~~~~~~~a-m~Y~~P~~~~av~~l~~d~v~~~V~l~lYPhfS~sTtgS~--f~-~l~~~~~  155 (339)
T TIGR00109        83 QAEALEKRLDKEIQE---EIDAKVYIA-MRYGEPFTEEAVKELLKDGVERLVVLPLYPHFSSSTTGSS--FN-ELAEALK  155 (339)
T ss_pred             HHHHHHHHCCCCCCC---CCCCCEEEE-EECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH--HH-HHHHHHH
T ss_conf             999998624422435---687330453-2127821899999986454648888514873000127889--99-9999998


Q ss_pred             HCCCC---EEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             75997---589816898798999999999999842
Q gi|254780200|r  309 NGGGE---KFTQVPCLNSSNLSIDLLEKITRRELM  340 (343)
Q Consensus       309 e~Gg~---~~~rvp~lN~~~~fi~~La~lv~~~l~  340 (343)
                      +.++.   .+..|+.-.+++.||.+++|.|++.|+
T Consensus       156 ~~~slR~~~~~~I~~w~~~~~y~~a~~d~i~~~l~  190 (339)
T TIGR00109       156 KLRSLRSLKISVIESWYDNEKYIKALADSIKETLK  190 (339)
T ss_pred             HCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             34896576314751445688799999999999984


No 27 
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=97.07  E-value=0.00082  Score=47.18  Aligned_cols=93  Identities=17%  Similarity=0.243  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHCCCCCCCHHH-HHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_conf             999999986522478430011-210454247899999870996589963171110014689999999999871-------
Q gi|254780200|r   97 DQATNLAKRLESISSIVVDWA-MRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHM-------  168 (343)
Q Consensus        97 ~qa~~L~~~L~~~~~~~V~~a-mry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~-------  168 (343)
                      ..++.+++++    +.+|+.| |-+.+|++++++.++.++|+++|+++|+|=  +..  .-..+++-+.+.-.       
T Consensus        21 ~la~~v~e~~----~~~v~~~fmElaePsi~e~l~~~v~~G~~~IiVvP~FL--~~G--~Hv~~DIP~~lg~~~~~~~~~   92 (125)
T cd03415          21 EWAAYLERKL----GVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFL--GRG--NHVARDIMGELGVSRFYKWVM   92 (125)
T ss_pred             HHHHHHHHHC----CCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEE--CCC--CCHHHCCHHHHCCCCCCCEEE
T ss_conf             9999999861----99558755110699889999999984998199995320--688--650102654508885674357


Q ss_pred             ----CCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             ----79986421334557800689999999999
Q gi|254780200|r  169 ----RWSPSLRTVPPYYEDSDYISALAQSIREH  197 (343)
Q Consensus       169 ----~~~~~~~~I~~~~~~p~yI~a~~~~I~~~  197 (343)
                          +....+-+-++..++|.--+++..+|+++
T Consensus        93 ~~~~gk~v~~~~a~Plg~~plv~~~l~~Rv~~a  125 (125)
T cd03415          93 SKYGGKEILVYVTEPLADSPLVKLALFYRVKRA  125 (125)
T ss_pred             EEECCCEEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             862694478998489898888999999998619


No 28 
>PRK05782 precorrin-8X methylmutase; Validated
Probab=96.91  E-value=0.021  Score=37.45  Aligned_cols=98  Identities=18%  Similarity=0.217  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCH-HHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH--------
Q ss_conf             99999999865224784300-112104542478999998709965899631711100146899999999998--------
Q gi|254780200|r   96 RDQATNLAKRLESISSIVVD-WAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI--------  166 (343)
Q Consensus        96 ~~qa~~L~~~L~~~~~~~V~-~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~--------  166 (343)
                      +.++..+++.|.    ++++ .-|-|.+|..++.+.++.+.|.++|+++|+|=- -..   -+.+++..++.        
T Consensus        23 ~~la~~~~e~lG----~~~~~~y~e~a~P~l~~gl~~l~~~g~~~ivv~p~FL~-~G~---HV~rDI~g~~g~~~~~~~~   94 (332)
T PRK05782         23 ENLAAYLEEKLG----VPAYLTYNEYAEPNWRSLLNDLLREGYDDVVIALAFLG-RGN---HVARDIMGELGVSEFGRWV   94 (332)
T ss_pred             HHHHHHHHHHCC----CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECC-CCC---CHHHHHHHHHCCCHHHHHH
T ss_conf             999999997449----84686330026997799999999816786799985506-886---0043424452752466677


Q ss_pred             -H--HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             -7--1799864213345578006899999999999733
Q gi|254780200|r  167 -H--MRWSPSLRTVPPYYEDSDYISALAQSIREHFESI  201 (343)
Q Consensus       167 -~--~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~  201 (343)
                       .  .+...++-+-++-.++|.--.++..+++.++...
T Consensus        95 ~~~~~g~~~~~~~t~~l~~~~~v~~~~~~R~~~a~~~~  132 (332)
T PRK05782         95 ESKYFGKRVELYVTEPLGDSPLVKLALLYRIKRALGAG  132 (332)
T ss_pred             HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             75303743699976888987389999999998602688


No 29 
>PRK05782 precorrin-8X methylmutase; Validated
Probab=96.84  E-value=0.057  Score=34.39  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEE--ECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             02689999899769983999--744054221255888758999999975997589816898798999999
Q gi|254780200|r  264 PPTDKTVEKLAHDGIKSLAI--ITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLL  331 (343)
Q Consensus       264 P~t~~~l~~L~~~G~k~v~v--~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~L  331 (343)
                      |.---.|-++.++|.+.=+|  +|+|||.         -.|.||...+.+.-.....-.-+.|+--++.+
T Consensus       263 PTAL~~ll~li~eg~~~pLVIG~PVGFVg---------AaESKe~L~~~~vP~I~~~GrKGGS~vAaAiv  323 (332)
T PRK05782        263 PTALAEALKIWKEGADIPFIVATPPGFTN---------ASEVKEELIKSGIPAVVVRGTYGGSGIAVAII  323 (332)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCCC---------HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf             58999999999759999849978976467---------49999999868999799816987699999999


No 30 
>pfam06180 CbiK Cobalt chelatase (CbiK). This family consists of several bacterial cobalt chelatase (CbiK) proteins (EC:4.99.1.-).
Probab=96.81  E-value=0.0087  Score=40.05  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCCCC----CHHHHHHHHHHHCCCHHH
Q ss_conf             79999717888999----988999999987489544
Q gi|254780200|r   19 IGVLLVNLGTPDGH----DFFSLRRYLREFLLDKRV   50 (343)
Q Consensus        19 ~gvLL~n~G~P~~~----~~~~V~~yL~~fl~D~~V   50 (343)
                      +||||+.+||--.-    +...++.-+++=|-|-.|
T Consensus         1 KAILlvsFGTs~~~~r~~ti~~ie~~v~~afP~~~V   36 (256)
T pfam06180         1 KAILVVSFGTSYKDTREKTIDKIEKKVAAEFPDYDV   36 (256)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             979999788995678999999999999998889818


No 31 
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=96.76  E-value=0.04  Score=35.46  Aligned_cols=57  Identities=16%  Similarity=0.223  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             0268999989976998399974405422125588875899999997599758981689
Q gi|254780200|r  264 PPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCL  321 (343)
Q Consensus       264 P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~l  321 (343)
                      |++.+.++++.++|.++|+|+| -|.+...=+..||=-+..+...+..+.++.+.++|
T Consensus        44 P~l~~~l~~l~~~G~~~ivvvP-~fL~~G~H~~~DIP~~l~~~~~~~p~~~~~~~~~l  100 (101)
T cd03416          44 PSLAEALDELAAQGATRIVVVP-LFLLAGGHVKEDIPAALAAARARHPGVRIRYAPPL  100 (101)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEE-EEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             9899999999966998599966-14135743076899999999988899589966999


No 32 
>KOG1321 consensus
Probab=96.39  E-value=0.056  Score=34.40  Aligned_cols=108  Identities=17%  Similarity=0.266  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCC----HHHHH-CCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH--HHHHH-
Q ss_conf             04577759999999986522478430----01121-045424789999987099658996317111001468--99999-
Q gi|254780200|r   89 SILRTHTRDQATNLAKRLESISSIVV----DWAMR-YGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTG--TAQDK-  160 (343)
Q Consensus        89 SPL~~~t~~qa~~L~~~L~~~~~~~V----~~amr-y~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtg--S~~~~-  160 (343)
                      -|-.....+-..++-++|+...++.-    .+|-. .-.|..+++++.|.+.|..+++++|..     +|+.  ..+++ 
T Consensus       246 DpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIa-----FvSeHIETL~Ei  320 (395)
T KOG1321         246 DPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIA-----FVSEHIETLHEI  320 (395)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEH-----HHHHHHHHHHHH
T ss_conf             975789999999999996137930243430367754456005899999876122445897521-----656778789984


Q ss_pred             ---HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             ---999998717998642133455780068999999999997338
Q gi|254780200|r  161 ---VFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQ  202 (343)
Q Consensus       161 ---~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~  202 (343)
                         +.+.+.+.+ .-+++-+.....+|.||+++++.+.++|+...
T Consensus       321 D~ey~e~a~k~g-ve~~~Rv~sln~~p~fI~~lADlV~ehL~s~~  364 (395)
T KOG1321         321 DIEYIEEALKKG-VENWKRVESLNGNPTFIEGLADLVAEHLKSNQ  364 (395)
T ss_pred             HHHHHHHHHHHH-HHHHEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             189999999976-54010146889982189989999998621312


No 33 
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=96.21  E-value=0.037  Score=35.69  Aligned_cols=50  Identities=28%  Similarity=0.488  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHH-CCCCCHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf             9999998652247843001121-0454247899999870996589963171110
Q gi|254780200|r   98 QATNLAKRLESISSIVVDWAMR-YGKPSVKEIINNLREEGCDRLLIFPLYPQYS  150 (343)
Q Consensus        98 qa~~L~~~L~~~~~~~V~~amr-y~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS  150 (343)
                      .++.+++++.   ...|..|+- ...|++++++.++.++|+++|+++|+|=.-.
T Consensus        21 l~~~l~~~~~---~~~V~~afle~~~P~l~~~l~~l~~~G~~~ivvvP~fL~~G   71 (101)
T cd03416          21 LAERLRERLP---GDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAG   71 (101)
T ss_pred             HHHHHHHHCC---CCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf             9999997689---98698665404799899999999966998599966141357


No 34 
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=96.06  E-value=0.072  Score=33.64  Aligned_cols=24  Identities=17%  Similarity=-0.010  Sum_probs=15.2

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf             679999717888999988999999
Q gi|254780200|r   18 KIGVLLVNLGTPDGHDFFSLRRYL   41 (343)
Q Consensus        18 K~gvLL~n~G~P~~~~~~~V~~yL   41 (343)
                      ..++|++..||+.......+..+.
T Consensus         2 ~~~~llvgHGsr~p~~~~~~~~~a   25 (245)
T COG2138           2 MPALLLVGHGSRLPRGREVAEAIA   25 (245)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHH
T ss_conf             724001004888862789999999


No 35 
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=95.88  E-value=0.18  Score=30.81  Aligned_cols=95  Identities=16%  Similarity=0.310  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC--CHHHHCCHHHHHHHH
Q ss_conf             799888999999999997266756704786225777654430268999989976998399974--405422125588875
Q gi|254780200|r  223 GDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT--PGFSSDCLETSYEIA  300 (343)
Q Consensus       223 gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p--~gFvsD~lETl~Eid  300 (343)
                      |.|=....+.-++.+.+.|+-...++.+-+--|.|     .|++.|+++++.++|+++|+++|  |-|.+-...+..|- 
T Consensus        63 ~SPL~~~t~~q~~~L~~~L~~~~~~~~V~~amry~-----~P~i~~~l~~l~~~g~~~iv~lPlyPqyS~sTt~S~~~~-  136 (159)
T cd03411          63 GSPLNEITRAQAEALEKALDERGIDVKVYLAMRYG-----PPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDE-  136 (159)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH-
T ss_conf             88789999999999999987328995189874327-----998999999998548884999979874131448999999-


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             899999997599758981689879
Q gi|254780200|r  301 HEAKEIFVNGGGEKFTQVPCLNSS  324 (343)
Q Consensus       301 ie~~e~~~e~Gg~~~~rvp~lN~~  324 (343)
                       -.+........-.+..|++..+|
T Consensus       137 -~~~~~~~~~~~~~i~~I~~f~d~  159 (159)
T cd03411         137 -VERALKKLRPAPELRVIRSFYDH  159 (159)
T ss_pred             -HHHHHHHCCCCCEEEEECCCCCC
T ss_conf             -99999964899848982886788


No 36 
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=94.93  E-value=0.038  Score=35.63  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             HHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             99865224784300112104542478999998709965899631
Q gi|254780200|r  102 LAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPL  145 (343)
Q Consensus       102 L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPL  145 (343)
                      |+..|.+.+.-.|++|.--+.|.+++++++|++.|+.++.++|+
T Consensus        21 l~~~l~~~~~~nv~vgtvEg~P~~e~vl~~L~~~g~k~V~L~Pl   64 (103)
T cd03413          21 LEYVLREEDPANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPL   64 (103)
T ss_pred             HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECH
T ss_conf             99999964998789999578589999999999769986999610


No 37 
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=94.44  E-value=0.5  Score=27.79  Aligned_cols=43  Identities=16%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             542478999998709965899631711100146899999999998717
Q gi|254780200|r  122 KPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR  169 (343)
Q Consensus       122 ~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~  169 (343)
                      -++..++|++|.++|+++|++.|++     ..-|.-++.+.+.+.+..
T Consensus        55 i~~p~eaL~~L~~~G~~~V~VQslh-----ii~G~Ey~~l~~~v~~~~   97 (127)
T cd03412          55 VDTPEEALAKLAADGYTEVIVQSLH-----IIPGEEYEKLKREVDAFK   97 (127)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECC-----EECCHHHHHHHHHHHHHH
T ss_conf             9999999999998799889994463-----667587999999999974


No 38 
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=94.11  E-value=0.59  Score=27.32  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEECCCCCCCC-----CCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHH
Q ss_conf             9999999999972--66756704786225777654-----4302689999899769983999744054221255888758
Q gi|254780200|r  229 HCHKTARLLKEFL--SWPDDRFKICFQSRFGRIKC-----LEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAH  301 (343)
Q Consensus       229 q~~~t~~~i~~~l--~~~~~~~~l~fQSr~Gp~~W-----L~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidi  301 (343)
                      +..+|...|.+.+  ..|+-+...||-|++=..+|     --|+..++|++|..+|+++|+|.|- .+....|=- +|--
T Consensus        14 ~~~~ti~~ie~~v~~afPd~~v~~AfTS~~I~~kl~~~g~~i~~p~eaL~~L~~~G~~~V~VQsl-hii~G~Ey~-~l~~   91 (127)
T cd03412          14 TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSL-HIIPGEEYE-KLKR   91 (127)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEC-CEECCHHHH-HHHH
T ss_conf             89999999999999988898499642289999999986999999999999999879988999446-366758799-9999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999997599758981689879899999999999984
Q gi|254780200|r  302 EAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRREL  339 (343)
Q Consensus       302 e~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~~~l  339 (343)
                      +...  .+.+.+.......|=.+++=.+.+++.+.+++
T Consensus        92 ~v~~--~~~~f~~i~~g~PLL~~~eD~~~v~~al~~~~  127 (127)
T cd03412          92 EVDA--FKKGFKKIKLGRPLLYSPEDYEEVAAALKDQI  127 (127)
T ss_pred             HHHH--HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             9999--74579679970567698799999999987339


No 39 
>PRK13129 consensus
Probab=84.56  E-value=3.6  Score=21.83  Aligned_cols=215  Identities=15%  Similarity=0.185  Sum_probs=103.8

Q ss_pred             CEE-EEEECCCCCCCCCHHHHHHHHHHHCCC-HHHHCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHCCCCCCCHHHHH
Q ss_conf             679-999717888999988999999987489-544117868889987666512574788999-99870778874045777
Q gi|254780200|r   18 KIG-VLLVNLGTPDGHDFFSLRRYLREFLLD-KRVVELPSWQWRPILFGYILNFRPSKIKHA-YAKIWNTAKNESILRTH   94 (343)
Q Consensus        18 K~g-vLL~n~G~P~~~~~~~V~~yL~~fl~D-~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~-Y~~Iw~~~gg~SPL~~~   94 (343)
                      |.| |-.+..|=|+   .+.-.+++..+-.. -++|++.-++--|+--|       +-+++. ++.+    ..|.-+.. 
T Consensus        18 ~~ali~yitaG~P~---~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADG-------pvIq~A~~~AL----~~G~~~~~-   82 (267)
T PRK13129         18 RCALMPFLMAGDPD---LETTAEALLILQENGADLIELGIPYSDPLADG-------PVIQAAATRAL----QSGTTLEK-   82 (267)
T ss_pred             CCEEEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHH-
T ss_conf             95589887071899---89999999999977999999799888877658-------99999999999----76987899-


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCH----HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5999999998652247843001121045424----789999987099658996317111001468999999999987179
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPSV----KEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRW  170 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~i----~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~  170 (343)
                      ...+.+.+.+.    .+.++ +-|.|++|..    ++-++++++.|++-+++ |=.|.-       -.+.+.+.+.+.+.
T Consensus        83 ~~~~~~~~r~~----~~~Pi-vlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~e-------E~~~~~~~~~~~gl  149 (267)
T PRK13129         83 VLEMLESLKGK----LTIPI-ILFTYYNPLLNRGMERFCEQAAAAGVAGLVV-PDLPLE-------EAEKLSPIAAERGI  149 (267)
T ss_pred             HHHHHHHHHCC----CCCCE-EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCHH-------HHHHHHHHHHHCCC
T ss_conf             99999985434----78888-9986107898855999999998669875767-899989-------99999999985398


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             98642133455780068999999999997338998669998336750267627998889999999999972667567047
Q gi|254780200|r  171 SPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKI  250 (343)
Q Consensus       171 ~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l  250 (343)
                      . .+.+|.+=..        .++|+.-.+...+  ...+.|.-|+.=.   + ..-..++.+..+.|.+.-+.   +..+
T Consensus       150 ~-~I~lvaPtt~--------~~Ri~~i~~~~~g--FiY~vs~~GvTG~---~-~~~~~~~~~~i~~ik~~t~~---Pv~v  211 (267)
T PRK13129        150 D-LILLVAPTTP--------AERMKRIAQQSRG--FTYLVSVTGVTGE---R-SQMENRVESLLQQLRQVTSK---PIAV  211 (267)
T ss_pred             E-EEEEECCCCC--------HHHHHHHHHCCCC--EEEEEECCCCCCC---C-CCCCHHHHHHHHHHHHHCCC---CEEE
T ss_conf             1-6899489996--------8999999816898--0898734665676---5-44508899999999983489---8178


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH
Q ss_conf             862257776544302689999899769983999744054
Q gi|254780200|r  251 CFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFS  289 (343)
Q Consensus       251 ~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFv  289 (343)
                      +|    |      =++.+...++.+-|..-| |+==+||
T Consensus       212 GF----G------Is~~e~v~~~~~~~ADGv-IVGSaiV  239 (267)
T PRK13129        212 GF----G------ISGPEQARQVREWGADGA-IVGSAFV  239 (267)
T ss_pred             EE----C------CCCHHHHHHHHHCCCCEE-EECHHHH
T ss_conf             84----4------799999999985499999-9878999


No 40 
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276   This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=81.43  E-value=4.7  Score=21.02  Aligned_cols=141  Identities=18%  Similarity=0.241  Sum_probs=90.4

Q ss_pred             HHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-----HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             210454247899999870996589963171110014689-----999999999871799864213345578006899999
Q gi|254780200|r  118 MRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGT-----AQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQ  192 (343)
Q Consensus       118 mry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS-----~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~  192 (343)
                      .|--.||.+-...|=+.      +-||++|   .||.||     .++....+.++-.           -+...|-+++.+
T Consensus       427 ~~R~~pf~~R~~~Q~~~------L~LP~LP---TTTIGSFPQT~evR~~R~~~r~g~-----------iS~e~Ye~~~k~  486 (778)
T TIGR01371       427 FRRRSPFKERLELQQER------LNLPLLP---TTTIGSFPQTKEVRKARAAFRKGE-----------ISEEEYEKFIKE  486 (778)
T ss_pred             CCCCCCHHHHHHHHHHH------HCCCCCC---CCCCCCCCCCHHHHHHHHHHHCCC-----------CCHHHHHHHHHH
T ss_conf             35788988999999998------0765588---666688788888999999973258-----------778999999998


Q ss_pred             HHHHHHHHCC-CCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHC---CCCCCCEEEEECC-CC------CCCC
Q ss_conf             9999997338-9986699983367502676279988899999999999726---6756704786225-77------7654
Q gi|254780200|r  193 SIREHFESIQ-WTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLS---WPDDRFKICFQSR-FG------RIKC  261 (343)
Q Consensus       193 ~I~~~l~~~~-~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~---~~~~~~~l~fQSr-~G------p~~W  261 (343)
                      .|++.++-.. -.=|.|+   ||=|+|.            -+++=-.|.|+   ...+-|-.+|=|| +=      =+.|
T Consensus       487 eI~~~I~~QEelGLDVLV---HGEfERN------------DMVEYFGE~L~GFafT~nGWVQSYGSRCVkPPIIyGDVsR  551 (778)
T TIGR01371       487 EIKKVIKIQEELGLDVLV---HGEFERN------------DMVEYFGEKLAGFAFTQNGWVQSYGSRCVKPPIIYGDVSR  551 (778)
T ss_pred             HHHHHHHHHHHCCCCEEE---CCCCCCC------------CHHHHHHHHHCHHEEEECCEEEECCCEECCCCEEEECCCC
T ss_conf             899999874232786010---3775548------------3368888721201221030152047210357778713211


Q ss_pred             CCHHHHHHHHH---HHHCCCC-----CEEEECCHHHHCCH
Q ss_conf             43026899998---9976998-----39997440542212
Q gi|254780200|r  262 LEPPTDKTVEK---LAHDGIK-----SLAIITPGFSSDCL  293 (343)
Q Consensus       262 L~P~t~~~l~~---L~~~G~k-----~v~v~p~gFvsD~l  293 (343)
                      .+|-|.+=..-   |=++=+|     =|-|..=||+=|=+
T Consensus       552 p~PMTV~w~~YAQSLT~KpVKGMLTGPVTIL~WSF~R~D~  591 (778)
T TIGR01371       552 PKPMTVKWSVYAQSLTSKPVKGMLTGPVTILNWSFVRDDI  591 (778)
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf             7777788897712146889776568321103553555688


No 41 
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=81.20  E-value=4.8  Score=20.96  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHH--CC-CCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             999999998652247843001121--04-54247899999870996589963
Q gi|254780200|r   96 RDQATNLAKRLESISSIVVDWAMR--YG-KPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus        96 ~~qa~~L~~~L~~~~~~~V~~amr--y~-~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      .+-++.|.+.-+. .++.. +.|.  .| +|++...+.+   .|+++++++=
T Consensus        39 ~~NAr~l~~~A~~-~gi~L-y~MtKQ~GRNP~l~~~l~~---~G~~g~VaVD   85 (382)
T cd06811          39 EENARLLAETAEK-YGIEL-YFMTKQFGRNPFLARALLE---AGIPGAVAVD   85 (382)
T ss_pred             HHHHHHHHHHHHH-CCCEE-EEEEECCCCCHHHHHHHHH---CCCCCEEEEE
T ss_conf             9999999999997-39689-9996105899899999997---3998568960


No 42 
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=79.36  E-value=5.5  Score=20.56  Aligned_cols=211  Identities=10%  Similarity=0.101  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH------HH
Q ss_conf             599999999865224784300112104542478999998709965899631711100146899999999998------71
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI------HM  168 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~------~~  168 (343)
                      +-.+..+|++     .++.++.|.-+ +++++..++.+...   +++.+..-+.-..-...+.. .....-.      ..
T Consensus        62 ~Psd~~~l~~-----ADli~~~G~~l-E~~l~k~l~~~~~~---~~i~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~~~~  131 (308)
T PRK09545         62 RPSDVKRLQS-----ADLVVWVGPEM-EAFLEKPVSKLPEN---KQVTIAQLPDVKPLLMKSAH-HDEDEDDHDHAAEKH  131 (308)
T ss_pred             CHHHHHHHHC-----CCEEEEECCCH-HHHHHHHHHHCCCC---CEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCC
T ss_conf             9999999860-----99999958656-77899999736657---80699822785423334545-655555555444556


Q ss_pred             -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             -7998642133455780068999999999997338998669998336750267627998889999999999972667567
Q gi|254780200|r  169 -RWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDR  247 (343)
Q Consensus       169 -~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~  247 (343)
                       .....-.+-+++|-+|.....+++.|.+.|.+.+-..          -.-+-.+.+-|..++.+.-+.+.+.+.-..++
T Consensus       132 ~~~h~hg~~DPH~WldP~na~~~a~~I~~~L~~~dP~~----------~~~y~~N~~~~~~~L~~ld~~~~~~la~~~~r  201 (308)
T PRK09545        132 DEDHHHGDYNMHLWLSPEIARATAVAIHDKLVELMPQS----------KAKLDANLKDFEAQLAATDKQIGNQLAPVKGK  201 (308)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             76555699997144799999999999999999868451----------79999999999999999999999972577788


Q ss_pred             CEEEEE-------CCCC--------CCCCCCHHH---HHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             047862-------2577--------765443026---8999989976998399974405422125588875899999997
Q gi|254780200|r  248 FKICFQ-------SRFG--------RIKCLEPPT---DKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVN  309 (343)
Q Consensus       248 ~~l~fQ-------Sr~G--------p~~WL~P~t---~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e  309 (343)
                      -.++|.       .++|        ..+=.+|+.   .+..+...++++ +++++-|.|-..-.||+          +++
T Consensus       202 ~~v~~HdAf~Yfa~~ygL~~~~~~~~~~e~~Ps~~~l~~l~~~ik~~~v-~~If~Ep~~~~k~~~~i----------a~~  270 (308)
T PRK09545        202 GYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEHKA-TCVFAEPQFRPAVIESV----------AKG  270 (308)
T ss_pred             EEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC-CEEEECCCCCHHHHHHH----------HHH
T ss_conf             6999772079999986993878871287767899999999999998399-79996599994999999----------986


Q ss_pred             CCCCEEEEECCCCCC-----HHHHHHHHHHHHH
Q ss_conf             599758981689879-----8999999999999
Q gi|254780200|r  310 GGGEKFTQVPCLNSS-----NLSIDLLEKITRR  337 (343)
Q Consensus       310 ~Gg~~~~rvp~lN~~-----~~fi~~La~lv~~  337 (343)
                      .|. ....+..|+.+     +.+++++.+++.+
T Consensus       271 ~g~-kv~~lDpLg~~~~~~~~~Y~~~m~~~~~~  302 (308)
T PRK09545        271 TSV-RMGTLDPLGTNIKLGKTSYSNFLSQLANQ  302 (308)
T ss_pred             CCC-EEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             598-59996787556888811799999999999


No 43 
>PRK08176 pdxK pyridoxal kinase; Reviewed
Probab=78.35  E-value=5.9  Score=20.36  Aligned_cols=197  Identities=15%  Similarity=0.144  Sum_probs=110.4

Q ss_pred             HCCCCCHHHHHHHHHHCCCCEE----EEEECCHHHHHHH----HHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHH
Q ss_conf             1045424789999987099658----9963171110014----6899999999998717998642-13345578006899
Q gi|254780200|r  119 RYGKPSVKEIINNLREEGCDRL----LIFPLYPQYSAAT----TGTAQDKVFQELIHMRWSPSLR-TVPPYYEDSDYISA  189 (343)
Q Consensus       119 ry~~P~i~~~l~~l~~~g~~~i----i~lPLyPqyS~sT----tgS~~~~~~~~l~~~~~~~~~~-~I~~~~~~p~yI~a  189 (343)
                      -||+=...-++--|...|++-.    ++|+=.|+|...+    +...++.+.+.+.+++...++. ++..|-.++..+++
T Consensus        26 ~~G~vgn~aaip~Ls~~G~~v~~lpTv~lSnhtgy~~~~g~~~~~~~~~~~l~~l~~~~~l~~~daI~TGylgs~~qi~~  105 (281)
T PRK08176         26 VYGSVGNSIAVPAIKANGLRVAAVPTVLLSNTPHYPTFYGGAIPDEWFAGYLRALQERDALRQLRAVTTGYMGSASQIKI  105 (281)
T ss_pred             ECCEECHHHHHHHHHHCCCEEEEECCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
T ss_conf             62546248899999977982125562654579999983178589999999999999759723478578610499999999


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC-CCHHHHHHHHHHHHHHH-----CCCCCCCEEEEECCCCCCCC-C
Q ss_conf             99999999973389986699983367502676279-98889999999999972-----66756704786225777654-4
Q gi|254780200|r  190 LAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGD-PYGCHCHKTARLLKEFL-----SWPDDRFKICFQSRFGRIKC-L  262 (343)
Q Consensus       190 ~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gD-pY~~q~~~t~~~i~~~l-----~~~~~~~~l~fQSr~Gp~~W-L  262 (343)
                      .++-|++.-++.+   +.+++.   =|+ +.++|- .|-.  .+.+...+++|     -+.+|.++.++-+  |. +. -
T Consensus       106 V~~~i~~~k~~~p---~~~~vv---DPV-MGD~g~~lyv~--~~~~~~~r~~Llp~AdiITPN~~Ea~~Lt--g~-~i~~  173 (281)
T PRK08176        106 LAEWLTALRADHP---DLLIMV---DPV-IGDIDSGIYVK--PDLPEAYRQHLLPLAQGLTPNIFELEILT--GK-PCRT  173 (281)
T ss_pred             HHHHHHHHHHHCC---CCEEEE---CCE-EECCCCCCCCC--HHHHHHHHHHHHCCCCEECCCHHHHHHHH--CC-CCCC
T ss_conf             9999999973289---976996---727-64499983678--77999999960130639738999999973--98-8699


Q ss_pred             CHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECC-----CCCCHHHHHHHHHHH
Q ss_conf             3026899998997699839997440542212558887589999999759975898168-----987989999999999
Q gi|254780200|r  263 EPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPC-----LNSSNLSIDLLEKIT  335 (343)
Q Consensus       263 ~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~-----lN~~~~fi~~La~lv  335 (343)
                      ..+..+.+++|.+.|.+.|+|-..++-.++-+. ..+.       ...+...+...|-     -++-+.|.++|+.-.
T Consensus       174 ~~~~~~aa~~L~~~G~~~VvITs~~~~~~~~~~-~~~~-------~~~~~~~~~~~p~i~~~~~GTGDlfaA~l~a~l  243 (281)
T PRK08176        174 LDEAIAAAKSLLSDTLKWVVITSAAGNEPNQEM-QVAV-------VTADSVNVISHPRVDTDLKGTGDLFCAELVSGL  243 (281)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE-EEEE-------ECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             999999999999719998999806577788716-8999-------859958999714128998873299999999999


No 44 
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=78.03  E-value=6  Score=20.29  Aligned_cols=61  Identities=16%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             26899998997699839997440542212558887589999999759975898168987989999999999
Q gi|254780200|r  265 PTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKIT  335 (343)
Q Consensus       265 ~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv  335 (343)
                      ++++++..|.++|.      =|||.+-|--. =--+-.+.++++...+.+|.   .+|.=-.|-+.|.|-.
T Consensus       367 s~dEvi~~l~~~gy------iPSfCTACYR~-GRTG~~FM~lak~g~I~~~C---~PNAl~T~~EyL~DYa  427 (471)
T PRK09613        367 SLDEVIRELCEMGY------IPSFCTACYRK-GRTGDRFMSLAKSGQIKNFC---QPNALLTFKEYLLDYA  427 (471)
T ss_pred             CHHHHHHHHHHCCC------CCCCCCCCCCC-CCCHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHHHHC
T ss_conf             99999999997799------77300105468-98578899862043623665---8007889999988728


No 45 
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=74.19  E-value=7.5  Score=19.61  Aligned_cols=103  Identities=6%  Similarity=0.081  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             986421334557800689999-------9999999733899866999833675026762799888999999999997266
Q gi|254780200|r  171 SPSLRTVPPYYEDSDYISALA-------QSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSW  243 (343)
Q Consensus       171 ~~~~~~I~~~~~~p~yI~a~~-------~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~  243 (343)
                      .|-+.+|.+|.-|+..+.--+       +.+++.+.+.+.+++++..  .|+|++-.=.. ++      ....+.+++|+
T Consensus       128 iP~~tViTD~~~H~~Wi~~~~D~y~Vase~~k~~l~~~Gv~~~kI~v--tGiPVr~~F~~-~~------~k~~~r~~lgL  198 (388)
T PRK13609        128 IPVYNVLTDFCVHKIWIHREVDRYFVATDHVKEVMVDIGVPAEQIVE--TGIPIRSSFEL-KI------NPDIIYNKYQL  198 (388)
T ss_pred             CCEEEEECCCCCHHHHCCCCCCEEEECCHHHHHHHHHHCCCHHHEEE--ECCCCCHHHCC-CC------CHHHHHHHHCC
T ss_conf             98899947852046455789997993989999999980998889998--89843878727-58------87899998289


Q ss_pred             CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             756704786225777654430268999989976998399974
Q gi|254780200|r  244 PDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT  285 (343)
Q Consensus       244 ~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p  285 (343)
                      .++...+ .-+  |.+......+.+.+++|.+..--.++|+|
T Consensus       199 ~~d~~~v-Lim--gGg~G~~g~i~~l~~~L~~~~~~qiiVVc  237 (388)
T PRK13609        199 CKNKKIL-LIV--AGAHGVLGNVKELCQSFMSVPDLQVVVVC  237 (388)
T ss_pred             CCCCCEE-EEE--CCHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             9878479-997--66012114799999997458992499990


No 46 
>KOG0159 consensus
Probab=72.93  E-value=2.3  Score=23.23  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH
Q ss_conf             257776544302689999899769983999744054
Q gi|254780200|r  254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFS  289 (343)
Q Consensus       254 Sr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFv  289 (343)
                      ++|-|+.||++++         +-...-+.+|.||=
T Consensus       435 ~~F~PeRWL~~~~---------~~~~pF~~LPFGfG  461 (519)
T KOG0159         435 EEFLPERWLKPST---------KTIHPFASLPFGFG  461 (519)
T ss_pred             CCCCHHHHCCCCC---------CCCCCCEECCCCCC
T ss_conf             0268055416555---------77687553377777


No 47 
>PRK05756 pyridoxamine kinase; Validated
Probab=72.05  E-value=8.4  Score=19.27  Aligned_cols=195  Identities=14%  Similarity=0.169  Sum_probs=111.0

Q ss_pred             CCCCCHHHHHHHHHHCCCCEE----EEEECCHHHHHHH----HHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHH
Q ss_conf             045424789999987099658----9963171110014----6899999999998717998642-133455780068999
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRL----LIFPLYPQYSAAT----TGTAQDKVFQELIHMRWSPSLR-TVPPYYEDSDYISAL  190 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~i----i~lPLyPqyS~sT----tgS~~~~~~~~l~~~~~~~~~~-~I~~~~~~p~yI~a~  190 (343)
                      ||.=...-++.-|...|++-.    +.++-.|+|...+    ...-++.+.+.+..++..-+++ ++..|-.++..+++.
T Consensus        14 ~G~vGn~aa~~~Lq~~G~~v~~v~Tv~~Snhtgy~~~~g~~~~~~~l~~~~~~l~~~~~l~~~davltGYlgs~~~~~~i   93 (287)
T PRK05756         14 YGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHITEIVQGIAAIGWLGECDAVLSGYLGSAEQGEAI   93 (287)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH
T ss_conf             78512687799999869866775058803689999877876999999999998986264455888997376999999999


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC-CCHHHHHHHHHHHHHHH-----CCCCCCCEEEEECCCCCCCCCCH
Q ss_conf             9999999973389986699983367502676279-98889999999999972-----66756704786225777654430
Q gi|254780200|r  191 AQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGD-PYGCHCHKTARLLKEFL-----SWPDDRFKICFQSRFGRIKCLEP  264 (343)
Q Consensus       191 ~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gD-pY~~q~~~t~~~i~~~l-----~~~~~~~~l~fQSr~Gp~~WL~P  264 (343)
                      ++.|++.-+..+   ..+.+ -.  |+ +.++|- .|-.+  +....+++.|     -+.+|+|++++-+  |..-=-.-
T Consensus        94 ~~~i~~~k~~np---~~~~v-~D--PV-mGD~g~g~yv~~--~~~~~~~~~llp~AdiiTPN~fEle~Lt--G~~i~~~~  162 (287)
T PRK05756         94 LGAVRRVKAANP---QALYL-CD--PV-MGHPEKGCIVAP--GVAEFLRDRALPAADIITPNLFELEWLS--GHPVETLE  162 (287)
T ss_pred             HHHHHHHHHHCC---CCEEE-EC--CE-EECCCCCEECCH--HHHHHHHHHCCCCCCEEECCHHHHHHHC--CCCCCCHH
T ss_conf             999999985299---82799-66--52-504898553287--6999999852253579838889999976--99659999


Q ss_pred             HHHHHHHHHHHCCCCCEEEECCH---HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-------CCCHHHHHHHHHH
Q ss_conf             26899998997699839997440---5422125588875899999997599758981689-------8798999999999
Q gi|254780200|r  265 PTDKTVEKLAHDGIKSLAIITPG---FSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCL-------NSSNLSIDLLEKI  334 (343)
Q Consensus       265 ~t~~~l~~L~~~G~k~v~v~p~g---FvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~l-------N~~~~fi~~La~l  334 (343)
                      +..+++..|.+.|.|.|+|-...   +-.|+++++.-          ...+....+.|.+       ++-+.|...|...
T Consensus       163 ~~~~A~~~l~~~g~~~VvvtS~~~~~~~~~~~~~l~~----------~~~~~~~~~~p~i~~~~~~~GtGDlfaAll~a~  232 (287)
T PRK05756        163 DAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLV----------TADGAWHISRPLVDFPRQPVGVGDLTSALFLAR  232 (287)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEE----------CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999719988999168777788883689998----------189439997322147779898269999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780200|r  335 T  335 (343)
Q Consensus       335 v  335 (343)
                      .
T Consensus       233 l  233 (287)
T PRK05756        233 L  233 (287)
T ss_pred             H
T ss_conf             8


No 48 
>CHL00194 ycf39 Ycf39; Provisional
Probab=70.83  E-value=8.9  Score=19.09  Aligned_cols=141  Identities=16%  Similarity=0.194  Sum_probs=73.0

Q ss_pred             HHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             89999987099658996317--1110014689999999999871799864213345578006899999999999733899
Q gi|254780200|r  127 EIINNLREEGCDRLLIFPLY--PQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWT  204 (343)
Q Consensus       127 ~~l~~l~~~g~~~ii~lPLy--PqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~  204 (343)
                      ..++..++.|++++|-++..  .+++.+.....-....+.+...+  .++.++++=+--..++..++.-|   ++.    
T Consensus        92 ~li~AAk~aGVkr~V~lS~lga~~~~~~p~~~~K~~~E~~L~~Sg--l~~TIlRPs~F~q~l~~~~a~pi---~~~----  162 (319)
T CHL00194         92 ALIEAAKAAKVKRFIFFSILNAEQYPQVPLMKIKSDIEEKLKQSG--INYTIFRLAGFFQGLISQYAIPI---LDS----  162 (319)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHHH---HCC----
T ss_conf             999999984998899961356666887567787999999998679--98599847399998899876776---307----


Q ss_pred             CCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             86699983367502676279988899999999999726675670478622577765443026899998997699839997
Q gi|254780200|r  205 PEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAII  284 (343)
Q Consensus       205 ~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~  284 (343)
                       ..+..+.-+.|..++.-.|        -++.++..|..+.. ..-.|.= .||.-|.--.+.+.++++..+. .+++=+
T Consensus       163 -~~v~~~~~~~~ia~I~~~D--------VA~~~a~aL~~~~~-~gk~y~L-~GP~a~T~~EIa~l~~~~~Gk~-~~i~~v  230 (319)
T CHL00194        163 -QTIWITGESTPIAYIDTQD--------AAKFALKSLSLPET-KNKTFPL-VGPKSWNSSEIISLCEQLSGQK-AKVTRI  230 (319)
T ss_pred             -CCEEECCCCCCCCCCCHHH--------HHHHHHHHHCCCCC-CCCEEEE-ECCCCCCHHHHHHHHHHHHCCC-CCEEEC
T ss_conf             -8577669987528877999--------99999999589775-8989995-4986389999999999985999-877868


Q ss_pred             CCHH
Q ss_conf             4405
Q gi|254780200|r  285 TPGF  288 (343)
Q Consensus       285 p~gF  288 (343)
                      |+.+
T Consensus       231 P~~~  234 (319)
T CHL00194        231 PLFL  234 (319)
T ss_pred             CHHH
T ss_conf             9899


No 49 
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein; InterPro: IPR014057   Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within the helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module..
Probab=70.30  E-value=9.1  Score=19.01  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHCCCH--HHHCCCHHHHHHHHHHHHHCCCC-HHHH-------H-HHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9889999999874895--44117868889987666512574-7889-------9-9998707788740457775999999
Q gi|254780200|r   33 DFFSLRRYLREFLLDK--RVVELPSWQWRPILFGYILNFRP-SKIK-------H-AYAKIWNTAKNESILRTHTRDQATN  101 (343)
Q Consensus        33 ~~~~V~~yL~~fl~D~--~Vi~~p~~~~~~il~~~I~~~R~-~~~~-------~-~Y~~Iw~~~gg~SPL~~~t~~qa~~  101 (343)
                      +.++|+.||.+-|-|.  +    |..+...+  |.|++-|- ..++       | .|+..   .++|.|-..-..+-+.+
T Consensus        13 ~~E~~a~YL~~a~e~gGdD----p~~~~~AL--G~iArArGMtqlA~~tGlsREsLYkAL---s~~GnP~f~T~lkV~~A   83 (91)
T TIGR02684        13 TDEEVAEYLAQALEDGGDD----PALIAAAL--GVIARARGMTQLAKKTGLSRESLYKAL---SGGGNPTFDTILKVTKA   83 (91)
T ss_pred             CHHHHHHHHHHHHHCCCCC----HHHHHHHH--HHHHHHCCHHHHHHHHCCCHHHHHHHH---CCCCCCCHHHHHHHHHH
T ss_conf             8789999999997436999----88999998--899865165789998287678878873---56889566888999984


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780200|r  102 LAK  104 (343)
Q Consensus       102 L~~  104 (343)
                      |.-
T Consensus        84 LG~   86 (91)
T TIGR02684        84 LGL   86 (91)
T ss_pred             CCC
T ss_conf             086


No 50 
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=68.28  E-value=10  Score=18.73  Aligned_cols=197  Identities=14%  Similarity=0.165  Sum_probs=108.8

Q ss_pred             CCCCCHHHHHHHHHHCCCCEE----EEEECCHHHHH----HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHH
Q ss_conf             045424789999987099658----99631711100----1468999999999987179986421-33455780068999
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRL----LIFPLYPQYSA----ATTGTAQDKVFQELIHMRWSPSLRT-VPPYYEDSDYISAL  190 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~i----i~lPLyPqyS~----sTtgS~~~~~~~~l~~~~~~~~~~~-I~~~~~~p~yI~a~  190 (343)
                      ||.=...-++.-|...|++-.    ++++-.|+|-.    ......++.+.+.+.+.+...++.- ...|-.++.-++++
T Consensus        11 ~G~vg~~aai~~l~~~G~~v~~lpTv~lSnhtg~~~~~g~~~~~~~l~~~l~~~~~~~~~~~~daI~tGyl~s~~~i~~v   90 (254)
T cd01173          11 HGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAV   90 (254)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf             78512799999999879855787558723379999855044889999999999997498666999999116999999999


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHH-----CCCCCCCEEEEECCCCCCCCCCHH
Q ss_conf             999999997338998669998336750267627998889999999999972-----667567047862257776544302
Q gi|254780200|r  191 AQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFL-----SWPDDRFKICFQSRFGRIKCLEPP  265 (343)
Q Consensus       191 ~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l-----~~~~~~~~l~fQSr~Gp~~WL~P~  265 (343)
                      ++.|++.-+..+  ...++.    =|+ +.++|--|. --.+....+.+.|     -+.+|.+++++-+.. +.+ -..+
T Consensus        91 ~~~i~~~k~~~~--~~~~v~----DPV-mgD~g~~y~-~~~~~~~~~r~~L~p~AdviTPN~~Ea~~Ltg~-~i~-~~~~  160 (254)
T cd01173          91 AEIVKRLKEKNP--NLLYVC----DPV-MGDNGKLYV-VAEEIVPVYRDLLVPLADIITPNQFELELLTGK-KIN-DLED  160 (254)
T ss_pred             HHHHHHHHHCCC--CCCEEE----CCE-EECCCCCCC-CCHHHHHHHHHHHHCCCCEECCCHHHHHHHHCC-CCC-CHHH
T ss_conf             999999862489--873896----515-852998843-788999999997313100715898999998299-979-9999


Q ss_pred             HHHHHHHHHHCCCCCEEEECCHHHHCC-HHHHHHHHHHHHHHHHHCCCCE-E--EEEC--C--CCCCHHHHHHHHHHHH
Q ss_conf             689999899769983999744054221-2558887589999999759975-8--9816--8--9879899999999999
Q gi|254780200|r  266 TDKTVEKLAHDGIKSLAIITPGFSSDC-LETSYEIAHEAKEIFVNGGGEK-F--TQVP--C--LNSSNLSIDLLEKITR  336 (343)
Q Consensus       266 t~~~l~~L~~~G~k~v~v~p~gFvsD~-lETl~Eidie~~e~~~e~Gg~~-~--~rvp--~--lN~~~~fi~~La~lv~  336 (343)
                      ..+.+++|.+.|.++|+|-...+-.|. +.++.          ...+... +  .+++  +  -++-+.|.++++....
T Consensus       161 ~~~aa~~L~~~g~~~Vvitg~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~GTGD~fsa~laa~l~  229 (254)
T cd01173         161 AKAAARALHAKGPKTVVVTSVELADDDRIEMLG----------STATEAWLVQRPKIPFPAYFNGTGDLFAALLLARLL  229 (254)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE----------ECCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999708999999986578888167999----------829915999975878999915599999999999998


No 51 
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=68.13  E-value=10  Score=18.71  Aligned_cols=62  Identities=23%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEEEE----CCCCCCCCCCHH---HHHHHHHHHHCCCCCEEEECCHHHHCCH
Q ss_conf             98889999999999972667567047862----257776544302---6899998997699839997440542212
Q gi|254780200|r  225 PYGCHCHKTARLLKEFLSWPDDRFKICFQ----SRFGRIKCLEPP---TDKTVEKLAHDGIKSLAIITPGFSSDCL  293 (343)
Q Consensus       225 pY~~q~~~t~~~i~~~l~~~~~~~~l~fQ----Sr~Gp~~WL~P~---t~~~l~~L~~~G~k~v~v~p~gFvsD~l  293 (343)
                      -|.....+.+..+.+. |    .-..-|.    ||.|  +++.|-   +.-+++...+....+|.++|++...|.+
T Consensus        85 ly~~vl~~yi~~ll~~-g----~~l~~F~EGtRSR~G--kl~~pK~GlL~~~~~a~~~~~~~dv~ivPVsIsYd~v  153 (205)
T cd07993          85 LYRAVLQEYVQELLKN-G----QPLEFFIEGTRSRTG--KLLPPKLGLLSVVVEAYLKGSVPDVLIVPVSISYDRV  153 (205)
T ss_pred             HHHHHHHHHHHHHHHC-C----CCEEEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECHH
T ss_conf             7999999999999848-9----848999378767789--8667568899999999970788973999877863011


No 52 
>PRK13139 consensus
Probab=67.47  E-value=10  Score=18.62  Aligned_cols=227  Identities=16%  Similarity=0.157  Sum_probs=102.7

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCC-HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH-HHHHCCCCCCCHHHHHHHH
Q ss_conf             9999717888999988999999987489-5441178688899876665125747889999-9870778874045777599
Q gi|254780200|r   20 GVLLVNLGTPDGHDFFSLRRYLREFLLD-KRVVELPSWQWRPILFGYILNFRPSKIKHAY-AKIWNTAKNESILRTHTRD   97 (343)
Q Consensus        20 gvLL~n~G~P~~~~~~~V~~yL~~fl~D-~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y-~~Iw~~~gg~SPL~~~t~~   97 (343)
                      =|--+..|=|+   .++-.+.+..+-.. -++|++.-++--|+.-|       +-+++.+ +.+    .+|.-+... ..
T Consensus        18 li~yitaG~P~---~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADG-------pvIq~A~~~AL----~~G~~~~~~-~~   82 (254)
T PRK13139         18 LMTHIVLGYPS---LQANREVIRAMVAGGVDLMELQIPFSEPMADG-------PVILKANQAAL----AGGFKVREC-FD   82 (254)
T ss_pred             EEEEECCCCCC---HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHHH-HH
T ss_conf             88785584899---79999999999966999999789888866658-------99999999999----769979999-99


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHCCCCCHH----HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999986522478430011210454247----89999987099658996317111001468999999999987179986
Q gi|254780200|r   98 QATNLAKRLESISSIVVDWAMRYGKPSVK----EIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPS  173 (343)
Q Consensus        98 qa~~L~~~L~~~~~~~V~~amry~~P~i~----~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~  173 (343)
                      +.+.+.++.    +.++ +-|.|++|...    .-++++++.|++-+++ |=.|.-       -.+++.+.+.+.+.. .
T Consensus        83 ~~~~~~~~~----~~pi-vlM~Y~N~i~~~G~e~F~~~~~~~Gv~GvIi-pDLP~e-------E~~~~~~~~~~~gl~-~  148 (254)
T PRK13139         83 FAREVVAAF----NIPF-LFMTYYNILFKYGVERFIDEVADIGVKGLIV-PDLPPE-------QAQDYIAQCRAKGMA-P  148 (254)
T ss_pred             HHHHHHHCC----CCCE-EEEEEHHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHH-------HHHHHHHHHHHCCCC-E
T ss_conf             999997248----9768-9995259998709999999999759985864-799978-------899999999846975-7


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             42133455780068999999999997338998669998336750267627998889999999999972667567047862
Q gi|254780200|r  174 LRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ  253 (343)
Q Consensus       174 ~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQ  253 (343)
                      +.+|.+= ..+       ++|+.-.+..++  .....|--|+-=   .+ ........+..+.+.+.-+.   +..++| 
T Consensus       149 I~lvaPt-t~~-------~Ri~~i~~~a~g--FiY~vs~~GvTG---~~-~~~~~~~~~~i~~ik~~t~~---Pv~vGF-  210 (254)
T PRK13139        149 IGIYAPT-STD-------ERMGKIAAAADG--FIYCVARRGVTG---SK-TSFDEHVGAFLHRCRAATPL---PLAVGF-  210 (254)
T ss_pred             EEEECCC-CCH-------HHHHHHHHCCCC--EEEEEECCCCCC---CC-CCCHHHHHHHHHHHHHCCCC---CEEEEC-
T ss_conf             9994589-998-------999999851698--699996666679---88-66458899999999855899---879973-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             2577765443026899998997699839997440542212558887589999999
Q gi|254780200|r  254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFV  308 (343)
Q Consensus       254 Sr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~  308 (343)
                         |=      ++.+.++.+. .+..-| |+==.|| ..+   +|-+.+.-+.|.
T Consensus       211 ---GI------~~~e~v~~~~-~~aDGv-IVGSaiV-k~i---e~~g~~~v~~f~  250 (254)
T PRK13139        211 ---GV------KSAADVDYLK-GKADIA-VVGSQAI-RLF---DEAGAAAVEPFF  250 (254)
T ss_pred             ---CC------CCHHHHHHHH-CCCCEE-EECHHHH-HHH---HHCCHHHHHHHH
T ss_conf             ---77------9999999997-169999-9888999-999---975999999999


No 53 
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=66.19  E-value=6.4  Score=20.09  Aligned_cols=71  Identities=27%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             88740457775999999998652247843001121045424789999987099658996317111001468999999999
Q gi|254780200|r   85 AKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQE  164 (343)
Q Consensus        85 ~gg~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~  164 (343)
                      .|-||.++-+|+.--..|-+              -+|+|.||-.+++|++.|++.|+++.           .+..+.++.
T Consensus         8 AG~gsR~~plT~~tpK~Llk--------------V~g~plIErqI~~L~e~gI~dI~IVv-----------GYlkE~FeY   62 (231)
T COG4750           8 AGLGSRFVPLTQSTPKSLLK--------------VNGEPLIERQIEQLREAGIDDITIVV-----------GYLKEQFEY   62 (231)
T ss_pred             CCCCCCCCCCCCCCCHHHHH--------------HCCCCCHHHHHHHHHHCCCCEEEEEE-----------EEHHHHHHH
T ss_conf             25566533131028767887--------------35855099999999977986189996-----------314899999


Q ss_pred             HHHHCCCCCCCCCCCCC
Q ss_conf             98717998642133455
Q gi|254780200|r  165 LIHMRWSPSLRTVPPYY  181 (343)
Q Consensus       165 l~~~~~~~~~~~I~~~~  181 (343)
                      ++..- ...+.+-+.|.
T Consensus        63 LkdKy-~vtLvyN~kY~   78 (231)
T COG4750          63 LKDKY-DVTLVYNPKYR   78 (231)
T ss_pred             HHHHC-CEEEEECCHHH
T ss_conf             98715-74999574077


No 54 
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=65.66  E-value=11  Score=18.39  Aligned_cols=76  Identities=14%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC----CCCCEEEE-CCHHH-HCCHHHHHHHHHHHHH
Q ss_conf             999999997266756704786225777654430268999989976----99839997-44054-2212558887589999
Q gi|254780200|r  232 KTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHD----GIKSLAII-TPGFS-SDCLETSYEIAHEAKE  305 (343)
Q Consensus       232 ~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~----G~k~v~v~-p~gFv-sD~lETl~Eidie~~e  305 (343)
                      +..+.+.+...-+.|-..+|=-| +|-  =.--++.+.+...+..    -.+||-.- +-+|. +.|+|---|+ +...+
T Consensus       230 ed~~~ll~~vdSp~NGiTlCtGS-~G~--~~dnDl~~mir~F~~rI~F~H~Rnv~~~~~~sF~E~~hleG~~Dm-~~vmk  305 (362)
T COG1312         230 EDYQRLLEMVDSPYNGITLCTGS-LGA--RADNDLPEMIREFASRIHFVHLRNVKREEPGSFHETAHLEGDTDM-VAVMK  305 (362)
T ss_pred             HHHHHHHHHCCCCCCCEEEECCC-CCC--CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCEEECCCCCCCCCH-HHHHH
T ss_conf             99999997336876776773464-346--753458999999851110322112146799870133566798449-99999


Q ss_pred             HHHHCC
Q ss_conf             999759
Q gi|254780200|r  306 IFVNGG  311 (343)
Q Consensus       306 ~~~e~G  311 (343)
                      ...+.|
T Consensus       306 a~~ee~  311 (362)
T COG1312         306 ALHEEG  311 (362)
T ss_pred             HHHHCC
T ss_conf             999644


No 55 
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=65.57  E-value=11  Score=18.38  Aligned_cols=65  Identities=9%  Similarity=0.151  Sum_probs=33.1

Q ss_pred             HHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECC--CCCCHHHHHHHHHHHHH
Q ss_conf             99998997699839997440542212558887589999999759975898168--98798999999999999
Q gi|254780200|r  268 KTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPC--LNSSNLSIDLLEKITRR  337 (343)
Q Consensus       268 ~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~--lN~~~~fi~~La~lv~~  337 (343)
                      +-++.|+++|+|.|+-.=|---..+--+.    -+.++.+.++| ..|.++|-  -+-++.-|+.+++++.+
T Consensus        18 ~di~~la~~GfktIInnRPd~E~~~qp~~----~~~~~~a~~~G-l~y~~iPv~~~~~t~~~v~~f~~~l~~   84 (110)
T pfam04273        18 DDIAAAARAGFRSVINNRPDGEEPGQPSN----AAEQAAARAAG-LAYRFIPVISGQITEADVEAFQRALAA   84 (110)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCCCCH----HHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             99999998598388533888777899888----99999999839-979996447789899999999999985


No 56 
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.39  E-value=11  Score=18.35  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=19.3

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             045424789999987099658996
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      .+.|.++.+++.+...++++++++
T Consensus        24 ~g~pli~~~i~~~~~~~~~~i~vv   47 (186)
T cd04182          24 DGKPLLRHALDAALAAGLSRVIVV   47 (186)
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf             973199999999997499832523


No 57 
>PRK01506 consensus
Probab=64.44  E-value=12  Score=18.23  Aligned_cols=163  Identities=14%  Similarity=0.142  Sum_probs=82.4

Q ss_pred             HHHHHHHCCCCEE-EEEECCHHHHHHHH----HH--HHHHHHHHHHHHCCC------CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999987099658-99631711100146----89--999999999871799------86421334557800689999999
Q gi|254780200|r  128 IINNLREEGCDRL-LIFPLYPQYSAATT----GT--AQDKVFQELIHMRWS------PSLRTVPPYYEDSDYISALAQSI  194 (343)
Q Consensus       128 ~l~~l~~~g~~~i-i~lPLyPqyS~sTt----gS--~~~~~~~~l~~~~~~------~~~~~I~~~~~~p~yI~a~~~~I  194 (343)
                      .+..+++.|.++| +++|-|| ||+-.-    |.  +.+.+.+.+...+..      +...-+..||+-|.-.=.-...+
T Consensus        79 ~i~a~r~~gA~~It~ViPY~~-YaRQDr~~~~ge~isak~vA~ll~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~l  157 (317)
T PRK01506         79 MIDALKRASAKTINIVIPYYG-YARQDRKARSREPITAKLVANLLETAGATRVITLDLHAPQIQGFFDIPIDHLMGVPIL  157 (317)
T ss_pred             HHHHHHHCCCCEEEEECCCCC-CCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEEEECHHH
T ss_conf             999988738974899626765-2437643358876138988878741588537996278487750169984315850888


Q ss_pred             HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-CC------------
Q ss_conf             99997338998669998336750267627998889999999999972667567047862257776-54------------
Q gi|254780200|r  195 REHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRI-KC------------  261 (343)
Q Consensus       195 ~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~-~W------------  261 (343)
                      .++++..+.+ ..++.|=        +.|      ..+-++.+++.||.+   +.+....|.++. -.            
T Consensus       158 ~~~~~~~~~~-~~vVVsP--------D~G------a~kra~~~a~~L~~~---~~~~~K~R~~~~~v~~~~~~gdV~Gr~  219 (317)
T PRK01506        158 SDYFETKGLK-DIVIVSP--------DHG------GVTRARKMADRLKAP---IAIIDKRRPRPNVAEVMNIIGNIEGKT  219 (317)
T ss_pred             HHHHHHCCCC-CCEEEEC--------CCH------HHHHHHHHHHHCCCC---EEEEEEECCCCCEEEEECCCCCCCCCE
T ss_conf             8899854887-7489904--------924------899999999972996---688986417998046302456557962


Q ss_pred             ---------CCHHHHHHHHHHHHCCCCCEEEECC-HHHH-CCHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             ---------4302689999899769983999744-0542-212558887589999999759975898168
Q gi|254780200|r  262 ---------LEPPTDKTVEKLAHDGIKSLAIITP-GFSS-DCLETSYEIAHEAKEIFVNGGGEKFTQVPC  320 (343)
Q Consensus       262 ---------L~P~t~~~l~~L~~~G~k~v~v~p~-gFvs-D~lETl~Eidie~~e~~~e~Gg~~~~rvp~  320 (343)
                               .+=++.++.+.|.++|.++|.+++. |..+ +.+|-|           .++|........+
T Consensus       220 vIIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl-----------~~s~i~~iv~TnT  278 (317)
T PRK01506        220 AILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLSGPAIERI-----------QNSKIKELVVTNS  278 (317)
T ss_pred             EEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH-----------HCCCCCEEEEECC
T ss_conf             7875132213505999999998659975899997700681799998-----------6189988999388


No 58 
>PRK04117 consensus
Probab=63.53  E-value=12  Score=18.12  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=80.1

Q ss_pred             HHHHHHCCCCEEE-EEECCHHHHHHHH----H--HHHHHHHHHHHHHCCC----CCC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999870996589-9631711100146----8--9999999999871799----864--213345578006899999999
Q gi|254780200|r  129 INNLREEGCDRLL-IFPLYPQYSAATT----G--TAQDKVFQELIHMRWS----PSL--RTVPPYYEDSDYISALAQSIR  195 (343)
Q Consensus       129 l~~l~~~g~~~ii-~lPLyPqyS~sTt----g--S~~~~~~~~l~~~~~~----~~~--~~I~~~~~~p~yI~a~~~~I~  195 (343)
                      +..+++.|..+|. ++|-|| ||+-.-    |  -+.+.+.+.+...+..    .++  .-+..||+-|.-.=.-...+.
T Consensus        74 ~~a~r~agA~~It~ViPY~~-YsRQDr~~~~ge~isak~vA~lL~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~~~  152 (309)
T PRK04117         74 TDALRRSSANSITAVVPYFG-YARQDRKAAPRVPITAKLVANLMQAAGIDRVVTMDLHAGQIQGFFDIPVDNLYGSIVFR  152 (309)
T ss_pred             HHHHHHCCCCEEEEEECCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCEEECCHHHH
T ss_conf             99998748973889603550-02144456999870189999888642776589961786887403689733034538778


Q ss_pred             HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--C------------
Q ss_conf             99973389986699983367502676279988899999999999726675670478622577765--4------------
Q gi|254780200|r  196 EHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIK--C------------  261 (343)
Q Consensus       196 ~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~--W------------  261 (343)
                      +++...+.++ .++.|    |    +      .-..+-++.+++.||.+   +.++...|.++.+  =            
T Consensus       153 ~~i~~~~~~~-~vvVs----P----D------~Ga~~ra~~~A~~Lg~~---~~~~~K~R~~~~~~~~~~~~gdV~Gk~v  214 (309)
T PRK04117        153 DYIKSKNLKN-PIIAS----P----D------IGGVARARYFAKKLGLD---MVIVDKRREKANESEVMNIIGDVKGKDV  214 (309)
T ss_pred             HHHHHHCCCC-CEEEC----C----C------CHHHHHHHHHHHHCCCC---EEEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             9999618887-46971----5----9------31999999998742788---7998511378885432344566489868


Q ss_pred             --------CCHHHHHHHHHHHHCCCCCEEEECC-HHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             --------4302689999899769983999744-05422125588875899999997599758981689
Q gi|254780200|r  262 --------LEPPTDKTVEKLAHDGIKSLAIITP-GFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCL  321 (343)
Q Consensus       262 --------L~P~t~~~l~~L~~~G~k~v~v~p~-gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~l  321 (343)
                              .+=++.++.+.|.++|.++|.+++. |-.++.          +.+...++|.++.....++
T Consensus       215 IIVDDiI~TGgTi~~aa~~L~~~GA~~V~~~~THglfs~~----------A~~rl~~s~i~~ivvTnTi  273 (309)
T PRK04117        215 ILVDDMIDTAGTIVKAAEALKEKGATSVMACCTHAVLSGP----------AYERIAKGALDELVVTNTI  273 (309)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH----------HHHHHHHCCCCEEEECCCC
T ss_conf             9757256527999999999986699748999945545836----------9999983899789982898


No 59 
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=63.24  E-value=12  Score=18.08  Aligned_cols=66  Identities=11%  Similarity=0.139  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHH---HHHHHHHHH
Q ss_conf             268999989976998399974405422125588875899999997599-7589816898798999---999999999
Q gi|254780200|r  265 PTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGG-EKFTQVPCLNSSNLSI---DLLEKITRR  337 (343)
Q Consensus       265 ~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg-~~~~rvp~lN~~~~fi---~~La~lv~~  337 (343)
                      ++.++|...   . -+++|  +++-+|-+=+-+|..-.++. ..++|. ..|..+++...|+.|.   +.+...|++
T Consensus       308 ~l~~aL~~I---~-a~~Lv--i~i~sD~lFpp~e~~e~~~~-l~~~~~~~~~~eI~S~~GHDaFLie~~~~~~~i~~  377 (387)
T PRK06765        308 SLEEALSNI---E-ANVLM--IPCKQDLLQPPRYNYKMVDI-LQKQGKYAEVYEIEGINGHMAGVFDIHLFEKKIYE  377 (387)
T ss_pred             CHHHHHHHC---C-CCEEE--EEECCCCCCCHHHHHHHHHH-HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             899999738---9-98899--98577317698999999999-98559987999979999836106289999999999


No 60 
>KOG3062 consensus
Probab=63.00  E-value=7.3  Score=19.69  Aligned_cols=52  Identities=15%  Similarity=0.146  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf             99999986522478430011210454247899999870996589963171110
Q gi|254780200|r   98 QATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYS  150 (343)
Q Consensus        98 qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS  150 (343)
                      +..++++.|.. +++.+.-+..|-+=|--+-.-.-++.+...+++...-||--
T Consensus        63 L~S~v~R~Lsk-~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~  114 (281)
T KOG3062          63 LRSAVDRSLSK-GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQEL  114 (281)
T ss_pred             HHHHHHHHCCC-CCEEEEECCCCCCCCEEEEEEEHHCCCEEEEEEEECCCHHH
T ss_conf             99999853356-86899814441122020365510105446899985279899


No 61 
>PRK01999 consensus
Probab=62.64  E-value=13  Score=18.01  Aligned_cols=162  Identities=14%  Similarity=0.217  Sum_probs=78.9

Q ss_pred             HHHHHHCCCCEEE-EEECCHHHHHHHH----H--HHHHHHHHHHHHHCCC------CCCCCCCCCCCCCHH-HHHHHHHH
Q ss_conf             9999870996589-9631711100146----8--9999999999871799------864213345578006-89999999
Q gi|254780200|r  129 INNLREEGCDRLL-IFPLYPQYSAATT----G--TAQDKVFQELIHMRWS------PSLRTVPPYYEDSDY-ISALAQSI  194 (343)
Q Consensus       129 l~~l~~~g~~~ii-~lPLyPqyS~sTt----g--S~~~~~~~~l~~~~~~------~~~~~I~~~~~~p~y-I~a~~~~I  194 (343)
                      +..+++.|..+|. ++|-|| ||+---    +  -+.+.+.+.+...+..      +...-+..||+-|.- +.+ ...+
T Consensus        75 ~dA~r~~~A~~It~ViPY~~-YaRQDr~~~~~e~isak~va~lL~~~G~d~vitvDlH~~~i~gfF~ipv~~l~a-~~~~  152 (311)
T PRK01999         75 IDAAKRASARSITAVIPYFG-WARQDRKDKPRVSIGAKLVADLLSVAGIDRLITMDLHADQIQGFFDKPVDHLYA-STVF  152 (311)
T ss_pred             HHHHHHCCCCEEEEECCCCC-CCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCCC-CHHH
T ss_conf             98898658863899625544-333766568998676777443430157865899826838887447998764437-5889


Q ss_pred             HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--------------
Q ss_conf             999973389986699983367502676279988899999999999726675670478622577765--------------
Q gi|254780200|r  195 REHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIK--------------  260 (343)
Q Consensus       195 ~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~--------------  260 (343)
                      .++++....++ .+|.|    |.    .      ...+-++.+++.||.+   +.++.-.|.++.+              
T Consensus       153 ~~~~~~~~~~~-~vvVs----PD----~------g~~kra~~~A~~Lg~~---~~~~~K~R~~~~~v~~~~~~gdV~Gk~  214 (311)
T PRK01999        153 LPYIRSLKLDN-LVIAT----PD----V------GGSKRASAYSKYLGVP---VVICYKSREKANEIASMQIIGDVKGKN  214 (311)
T ss_pred             HHHHHHCCCCC-EEEEC----CC----H------HHHHHHHHHHHHHCCC---EEEEECCCCCCCCCEECCCCCCCCCCE
T ss_conf             99999639876-08981----59----0------4999999999861787---233110246788411313343547966


Q ss_pred             -C-------CCHHHHHHHHHHHHCCCCCEEEECC-HH-HHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             -4-------4302689999899769983999744-05-422125588875899999997599758981689
Q gi|254780200|r  261 -C-------LEPPTDKTVEKLAHDGIKSLAIITP-GF-SSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCL  321 (343)
Q Consensus       261 -W-------L~P~t~~~l~~L~~~G~k~v~v~p~-gF-vsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~l  321 (343)
                       .       .+=++.++.+.|.++|.++|.+++. |- .-+.+|-           ..++|..+.....++
T Consensus       215 ~IIVDDiIdTGgTl~~aa~~L~~~GA~~V~~~~THglfs~~A~~r-----------l~~s~i~~iv~TdTi  274 (311)
T PRK01999        215 VILVDDMVDTAGTITKAADLMMEKGAKSVRAIASHAVMSGPASER-----------VENSKLTEMIFTDSI  274 (311)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH-----------HHHCCCCEEEECCCC
T ss_conf             999754444347899999999855997389999455458559999-----------974899889983785


No 62 
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=62.58  E-value=13  Score=18.00  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=28.6

Q ss_pred             HHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             99998997699839997440542212558887589999999759975898168987
Q gi|254780200|r  268 KTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNS  323 (343)
Q Consensus       268 ~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~  323 (343)
                      +.+.+|+.+  -.+.++--|+=|-|.--|+|+       +.+.|...| .|...++
T Consensus       204 ~Avk~la~~--~Dl~iVVG~~nSSNs~rL~ei-------A~~~g~~ay-lId~~~e  249 (294)
T COG0761         204 DAVKELAPE--VDLVIVVGSKNSSNSNRLAEI-------AKRHGKPAY-LIDDAEE  249 (294)
T ss_pred             HHHHHHHHC--CCEEEEECCCCCCCHHHHHHH-------HHHHCCCEE-EECCHHH
T ss_conf             999987603--889999789898667899999-------998599818-9689376


No 63 
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=61.06  E-value=14  Score=17.83  Aligned_cols=114  Identities=11%  Similarity=0.080  Sum_probs=50.5

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHC----CCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999986522478430011210----454247899999870996589963171110014689999999999871799864
Q gi|254780200|r   99 ATNLAKRLESISSIVVDWAMRY----GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSL  174 (343)
Q Consensus        99 a~~L~~~L~~~~~~~V~~amry----~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~  174 (343)
                      .+.+...++.+-+ -|..|+-|    ++|++..+|.+-.+..+.=..-+|..|--+.   ..--+.+.+.|.+.+.    
T Consensus        37 ~~~i~~aie~GiN-yidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~~~~~---edm~r~fneqLekl~~----  108 (391)
T COG1453          37 NETIDYAIEHGIN-YIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWPVKDR---EDMERIFNEQLEKLGT----  108 (391)
T ss_pred             HHHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH---HHHHHHHHHHHHHHCC----
T ss_conf             9999999972876-4762032458874699999864215113798740587534479---9999999999998488----


Q ss_pred             CCCCCCCCCCHHHHHHHHH----HHHHHHHCC--CCCCEEEEEECCCCHHHH
Q ss_conf             2133455780068999999----999997338--998669998336750267
Q gi|254780200|r  175 RTVPPYYEDSDYISALAQS----IREHFESIQ--WTPEMLLVSFHQMPVSYL  220 (343)
Q Consensus       175 ~~I~~~~~~p~yI~a~~~~----I~~~l~~~~--~~~~~llfSaHglP~~~~  220 (343)
                      ..++-|--|-.=-+.|...    .-+++++..  ++=.++-||+||-+.-..
T Consensus       109 Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~  160 (391)
T COG1453         109 DYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFK  160 (391)
T ss_pred             CHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf             6101020111467789999703748999999856967886315789789999


No 64 
>PRK06849 hypothetical protein; Provisional
Probab=60.02  E-value=14  Score=17.70  Aligned_cols=17  Identities=6%  Similarity=0.012  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             89999999999972667
Q gi|254780200|r  228 CHCHKTARLLKEFLSWP  244 (343)
Q Consensus       228 ~q~~~t~~~i~~~l~~~  244 (343)
                      .++.+.++.+.+.+++.
T Consensus       236 p~i~e~v~~f~~~~~~t  252 (387)
T PRK06849        236 PRIEEFVTHFVKELNYT  252 (387)
T ss_pred             HHHHHHHHHHHHHCCCE
T ss_conf             89999999999847851


No 65 
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=59.91  E-value=14  Score=17.69  Aligned_cols=53  Identities=9%  Similarity=0.163  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHH---HHHHHHHHCCCCEEEEE
Q ss_conf             87404577759999999986522478430011210454247---89999987099658996
Q gi|254780200|r   86 KNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVK---EIINNLREEGCDRLLIF  143 (343)
Q Consensus        86 gg~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~---~~l~~l~~~g~~~ii~l  143 (343)
                      .||+- ...|-..+...|+.+    .+++-+-|.+++=.++   ++|+..+..||++|++|
T Consensus        45 AGG~~-~~~t~~ias~~q~~~----~~et~MHLTCTN~~~e~ID~AL~~~~~~G~~NiLAL  100 (312)
T TIGR00677        45 AGGTT-AELTLTIASTAQNVL----GVETCMHLTCTNMPIEMIDDALERAKSNGIQNILAL  100 (312)
T ss_pred             CCCCC-HHHHHHHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf             78861-456699999987551----455300355789757889999999986565334003


No 66 
>PRK00077 eno phosphopyruvate hydratase; Provisional
Probab=59.70  E-value=14  Score=17.67  Aligned_cols=186  Identities=15%  Similarity=0.183  Sum_probs=91.5

Q ss_pred             CCCEEEEEEC-CHHHHHH--HHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-CE
Q ss_conf             9965899631-7111001--468999999999987179986----42133455780068999999999997338998-66
Q gi|254780200|r  136 GCDRLLIFPL-YPQYSAA--TTGTAQDKVFQELIHMRWSPS----LRTVPPYYEDSDYISALAQSIREHFESIQWTP-EM  207 (343)
Q Consensus       136 g~~~ii~lPL-yPqyS~s--TtgS~~~~~~~~l~~~~~~~~----~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~-~~  207 (343)
                      .+++.+++|. ++-|+.+  ....++..+.+.+++.+....    =-|.+++-++..-++.+.+.|..    ...++ ..
T Consensus       161 diQEfmIiP~ga~sf~eal~~~~ev~~~Lk~~L~~kg~~t~vGDEGGfaP~~~~~eeaL~ll~~AI~~----aGy~~G~d  236 (427)
T PRK00077        161 DIQEFMIMPVGAPSFKEALRMGAEVFHALKKVLKDKGLSTAVGDEGGFAPNLKSNEEALELILEAIEK----AGYEPGED  236 (427)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----CCCCCCCE
T ss_conf             61478871799888899999999999999999986599876567877489998849999999999997----08887870


Q ss_pred             EEE----EECCCC--HHHHHHCC---CCHHHHHHHHHHHHHHH-------CCCCCCCE--EEEECCCCC-----CCCCCH
Q ss_conf             999----833675--02676279---98889999999999972-------66756704--786225777-----654430
Q gi|254780200|r  208 LLV----SFHQMP--VSYLLKGD---PYGCHCHKTARLLKEFL-------SWPDDRFK--ICFQSRFGR-----IKCLEP  264 (343)
Q Consensus       208 llf----SaHglP--~~~~~~gD---pY~~q~~~t~~~i~~~l-------~~~~~~~~--l~fQSr~Gp-----~~WL~P  264 (343)
                      +-+    .|+.+=  .+|.-+++   --..+..+....+.++.       ++.+++|.  -.+..++|.     +-=|--
T Consensus       237 i~ialD~AASefy~~gkY~~~~~~~~~s~~eli~~y~~l~~~YPI~sIEDp~~EdD~~gw~~lt~~lg~k~~iVGDDL~v  316 (427)
T PRK00077        237 IALALDCAASEFYEDGKYVLEGEGKVLTSEEQIDYLAELVDKYPIVSIEDGLDENDWDGWALLTERLGDKVQLVGDDLFV  316 (427)
T ss_pred             EEEEECCCHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             89972420676752782465477764588999999999998799778746888226899999999709967998884134


Q ss_pred             HHHHHHHHHHHCCCCCEEEEC---CHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             268999989976998399974---405422125588875899999997599758981689879899999999
Q gi|254780200|r  265 PTDKTVEKLAHDGIKSLAIIT---PGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEK  333 (343)
Q Consensus       265 ~t~~~l~~L~~~G~k~v~v~p---~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~  333 (343)
                      .-.+.|++-.+++.-|-+++=   +|-++|-+|        +-+++.++|.....--.+=-+.+.||.-||=
T Consensus       317 Tn~~rl~kgi~~~~~NaiLiK~NQiGTvset~e--------ai~la~~~g~~~ivShRSGETeD~~IaDLAV  380 (427)
T PRK00077        317 TNPKILKEGIEKGAANSILIKVNQIGTLTETLE--------AIELAKRAGYTAVISHRSGETEDTTIADLAV  380 (427)
T ss_pred             CCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH--------HHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf             688999725540766479984434673999999--------9999998698799978989866215999898


No 67 
>TIGR00249 sixA phosphohistidine phosphatase SixA; InterPro: IPR004449 Phosphohistidine phosphatase SixA (3.1.3 from EC) from Escherichia coli exhibits phosphatase activity towards the HPT domain of the ArcB sensor involved in the multistep his-asp phosphorelay.; GO: 0008969 phosphohistidine phosphatase activity.
Probab=59.56  E-value=14  Score=17.65  Aligned_cols=52  Identities=17%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHC--CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             999999999726--6756704786225777654430268999989976998399974
Q gi|254780200|r  231 HKTARLLKEFLS--WPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT  285 (343)
Q Consensus       231 ~~t~~~i~~~l~--~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p  285 (343)
                      +.|++.|++.++  ++. +.+ . -+-..|..=++=-+.|.+++|.++|++.|++|.
T Consensus        64 ~qT~~~v~~~~~leL~~-~~e-~-~~~L~P~~di~~G~~~~le~l~~~gv~sv~lvg  117 (169)
T TIGR00249        64 EQTAEIVADALDLELES-EAE-V-LEGLTPLGDIGLGVADYLEKLKEEGVKSVLLVG  117 (169)
T ss_pred             HHHHHHHHHHCCCCCCC-HHH-C-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             89999999870874631-110-0-368887331102089999875206846899850


No 68 
>cd01020 TroA_b Metal binding protein TroA_b.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.33  E-value=16  Score=17.40  Aligned_cols=143  Identities=12%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC-
Q ss_conf             3345578006899999999999733899866999833675026762799888999999999997266756704786225-
Q gi|254780200|r  177 VPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSR-  255 (343)
Q Consensus       177 I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr-  255 (343)
                      =+++|-+|.....+++.|.+.|.+.+-..          -..|-.+..-|..++.+.-+.+.+.+.-..++-.++|... 
T Consensus        94 dPHiWldp~~~~~~a~~I~~~L~~~dP~~----------~~~y~~N~~~~~~~L~~L~~~~~~~~~~~~~~~~v~~H~af  163 (264)
T cd01020          94 NPHLWYDPETMSKVANALADALVKADPDN----------KKYYQANAKKFVASLKPLAAKIAELSAKYKGAPVAATEPVF  163 (264)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf             98937799999999999999999869021----------79999999999999999999999851457898699965417


Q ss_pred             ------CCCC----C---C-----CCH--HHHHHHHH-HHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             ------7776----5---4-----430--26899998-997699839997440542212558887589999999759975
Q gi|254780200|r  256 ------FGRI----K---C-----LEP--PTDKTVEK-LAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEK  314 (343)
Q Consensus       256 ------~Gp~----~---W-----L~P--~t~~~l~~-L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~  314 (343)
                            +|=.    .   |     -+|  .....+.+ +.+.|+ +++++-+.|..--.|++-       +.+.+.|..-
T Consensus       164 ~Yf~~~yGl~~~~~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v-~~If~e~q~~~~~a~~i~-------~~a~~~~v~v  235 (264)
T cd01020         164 DYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQI-DALIVNPQQASSATTNIT-------GLAKRSGVPV  235 (264)
T ss_pred             HHHHHHCCCEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHH-------HHHHHCCCEE
T ss_conf             99999779945044203412378899999999999999998699-999982898808999999-------9998559569


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             89816898798999999999999
Q gi|254780200|r  315 FTQVPCLNSSNLSIDLLEKITRR  337 (343)
Q Consensus       315 ~~rvp~lN~~~~fi~~La~lv~~  337 (343)
                      ............+++++..-++.
T Consensus       236 ~~l~e~~~~~~tY~~~M~~Nl~~  258 (264)
T cd01020         236 VEVTETMPNGTTYLTWMLKQVDQ  258 (264)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHH
T ss_conf             84256789999899999999999


No 69 
>TIGR00110 ilvD dihydroxy-acid dehydratase; InterPro: IPR004404   Two dehydratases, dihydroxy-acid dehydratase (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (gene edd) have been shown to be evolutionary related . Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyzes the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster .   This family represents dihydroxy-acid dehydratase (DAD). It contains a catalytically essential [4Fe-4S] cluster and catalyses the fourth step in valine and isoleucine biosynthesis.; GO: 0004160 dihydroxy-acid dehydratase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=56.36  E-value=14  Score=17.76  Aligned_cols=56  Identities=20%  Similarity=0.355  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCC--------------HHHHHCCCCCHH---HHHHHHHHC-CCCEEEEEE
Q ss_conf             04577759999999986522478430--------------011210454247---899999870-996589963
Q gi|254780200|r   89 SILRTHTRDQATNLAKRLESISSIVV--------------DWAMRYGKPSVK---EIINNLREE-GCDRLLIFP  144 (343)
Q Consensus        89 SPL~~~t~~qa~~L~~~L~~~~~~~V--------------~~amry~~P~i~---~~l~~l~~~-g~~~ii~lP  144 (343)
                      -|=..+-+.+++.+++.+.+-+.++.              .-||||+=||-|   |+++.|... ..|=+|++|
T Consensus        31 vPGh~hL~dl~~~v~~~i~~AGgva~eFNTI~i~DGIAMGh~GM~YSLpSREiIADsvE~m~~Ah~~Dg~v~Ip  104 (601)
T TIGR00110        31 VPGHVHLRDLGKRVKEGIEAAGGVAFEFNTIAICDGIAMGHEGMKYSLPSREIIADSVETMVNAHRFDGLVCIP  104 (601)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEECCEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             36732488899999999997088601046337757710288765101454012021289998874169379815


No 70 
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=55.96  E-value=16  Score=17.25  Aligned_cols=68  Identities=9%  Similarity=0.190  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHH---HHHHHHHHHHH
Q ss_conf             268999989976998399974405422125588875899999997599-7589816898798999---99999999984
Q gi|254780200|r  265 PTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGG-EKFTQVPCLNSSNLSI---DLLEKITRREL  339 (343)
Q Consensus       265 ~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg-~~~~rvp~lN~~~~fi---~~La~lv~~~l  339 (343)
                      ++.++|...   . -+++|+  ++-+|-+=..+|....++.+ .++|. ..|.-+++...|+.|.   +-+..+|+..|
T Consensus       299 dl~~AL~~I---~-a~~Lvi--~i~sD~lFPp~~~~~~a~~l-~~~~~~~~~~eI~S~~GHDaFLie~~~~~~~i~~FL  370 (379)
T PRK00175        299 DLAAALAGI---K-ARFLVV--SFTTDWLFPPARSREIVDAL-LAAGADVSYAEIDSPHGHDAFLLDDPRYGPLVRAFL  370 (379)
T ss_pred             CHHHHHHCC---C-CCEEEE--ECCCCCCCCHHHHHHHHHHH-HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             899997308---9-988999--60755072899999999999-866997699996899974501558899999999999


No 71 
>PRK13137 consensus
Probab=55.90  E-value=16  Score=17.24  Aligned_cols=220  Identities=15%  Similarity=0.174  Sum_probs=106.9

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH-HHHHCCCCCCCHHHHHHHHH
Q ss_conf             99997178889999889999999874895441178688899876665125747889999-98707788740457775999
Q gi|254780200|r   20 GVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAY-AKIWNTAKNESILRTHTRDQ   98 (343)
Q Consensus        20 gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y-~~Iw~~~gg~SPL~~~t~~q   98 (343)
                      =|-.+.-|-|+-.   .-...+..+...-++|++.-++--|+--|       +-+++.+ +.+    ..|--+.. ...+
T Consensus        27 li~yitaG~P~~~---~s~~~~~~l~~gaDiiElGiPFSDP~ADG-------PvIQ~A~~~AL----~~G~~l~~-~l~~   91 (266)
T PRK13137         27 FIPFLTAGYPSAA---GFLQVAEELLAYADLLEVGIPYSDPLGDG-------PTIQRASEQAL----AGGTSTRR-TLEL   91 (266)
T ss_pred             EEEEECCCCCCHH---HHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHH-HHHH
T ss_conf             8878668188878---99999999973899899789988856657-------99999999999----77986778-9999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999865224784300112104542----47899999870996589963171110014689999999999871799864
Q gi|254780200|r   99 ATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSL  174 (343)
Q Consensus        99 a~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~  174 (343)
                      .+.+.+    ..+.++ +-|-|.+|.    +++-++++++.|++-+++ |=-|.-       -.+++.+...+.+. .-+
T Consensus        92 ~~~~r~----~~~~Pi-vlM~Y~N~i~~yG~e~F~~~a~~aGvdGlIi-pDLP~e-------E~~~~~~~~~~~gi-~~I  157 (266)
T PRK13137         92 VRELRA----LTDTPL-VIMTYLNPIYAVGPEEFMRLFQEAGVDGLIL-PDLPPD-------QDPEIADLAAEIGL-AVT  157 (266)
T ss_pred             HHHHCC----CCCCCE-EEEECHHHHHHHCHHHHHHHHHHCCCCEEEE-CCCCHH-------HHHHHHHHHHHCCC-CEE
T ss_conf             997555----689878-9993458998758999999999769609994-799978-------88999999987599-789


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             21334557800689999999999973389986699983367502676279988899999999999726675670478622
Q gi|254780200|r  175 RTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQS  254 (343)
Q Consensus       175 ~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQS  254 (343)
                      .+|.+=-.        -++|+.-.+...+  .....|.-|+-=   .+..-...++.+..+.+.+.-++   +..++|  
T Consensus       158 ~lvaPtT~--------~eRi~~i~~~a~G--FiY~Vs~~GvTG---~r~~~~~~~l~~~i~~ik~~t~~---Pv~vGF--  219 (266)
T PRK13137        158 FLIAPTST--------PERVKLVARACTG--FLYAVSVTGVTG---MREGLALGEVPDMLRLARQYAAL---PVAVGF--  219 (266)
T ss_pred             EEECCCCC--------HHHHHHHHHHCCC--CEEEEECCCCCC---CCCCCCHHHHHHHHHHHHHCCCC---CEEEEC--
T ss_conf             99379999--------9999999960888--289974467667---77667879999999999863899---879982--


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHH
Q ss_conf             5777654430268999989976998399974405422125588
Q gi|254780200|r  255 RFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSY  297 (343)
Q Consensus       255 r~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~  297 (343)
                        |=   -.|   +..+.+.+.  -.-+|+ =|=+.+++|---
T Consensus       220 --GI---s~~---e~~~~~~~~--aDGvIV-GSaiV~~i~e~~  251 (266)
T PRK13137        220 --GV---KDK---ATAAQVAQV--ADGVVV-GSAFINAVEEGR  251 (266)
T ss_pred             --CC---CCH---HHHHHHHHH--CCEEEE-HHHHHHHHHHCC
T ss_conf             --66---988---999999831--999998-099999999589


No 72 
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092   Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=55.30  E-value=14  Score=17.69  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999870996589963171110014689999999999871799864213345578006899999999999
Q gi|254780200|r  128 IINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHF  198 (343)
Q Consensus       128 ~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l  198 (343)
                      +|+=|++.|+++|.++|          |.+++.+|.+|...+.  ++++|.-=|.+-+   |+|...+.+|
T Consensus         5 ~LkVl~~WgV~~iYG~p----------GGS~~S~M~AL~~~~~--rl~YiQVRHEe~G---AlAA~adaKL   60 (577)
T TIGR02720         5 VLKVLEAWGVDHIYGIP----------GGSFNSTMDALAEERD--RLKYIQVRHEEVG---ALAAAADAKL   60 (577)
T ss_pred             HHHHHHHCCCCEEECCC----------CCCHHHHHHHHHHHHC--CCEEEEEEHHHHH---HHHHHHHHCC
T ss_conf             77688656875651368----------8757789999986101--1204564047788---9999985303


No 73 
>TIGR00216 ispH_lytB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; InterPro: IPR003451   Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants .    LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood . Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response .; GO: 0019288 isopentenyl diphosphate biosynthetic process mevalonate-independent pathway.
Probab=54.47  E-value=17  Score=17.09  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=11.7

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             999971788899998899999998
Q gi|254780200|r   20 GVLLVNLGTPDGHDFFSLRRYLRE   43 (343)
Q Consensus        20 gvLL~n~G~P~~~~~~~V~~yL~~   43 (343)
                      -|++=++|=|  |   ++++-|++
T Consensus        87 ~Vi~rAHGv~--~---~v~e~l~~  105 (354)
T TIGR00216        87 TVIIRAHGVP--P---EVREELEK  105 (354)
T ss_pred             EEEEECCCCC--H---HHHHHHHH
T ss_conf             5999727989--8---89999985


No 74 
>PRK13135 consensus
Probab=54.28  E-value=17  Score=17.07  Aligned_cols=218  Identities=14%  Similarity=0.153  Sum_probs=106.7

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHCCCCCCCHHHHHH
Q ss_conf             6799997178889999889999999874-89544117868889987666512574788999-998707788740457775
Q gi|254780200|r   18 KIGVLLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHA-YAKIWNTAKNESILRTHT   95 (343)
Q Consensus        18 K~gvLL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~-Y~~Iw~~~gg~SPL~~~t   95 (343)
                      |-=|-.+..|-|+   .+.-.++++.+- +.-++|++.-++--|+--|       +-+++. .+.+    .+|.-+... 
T Consensus        17 ~ali~yitaG~P~---~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADG-------PvIq~A~~rAL----~~G~~~~~~-   81 (267)
T PRK13135         17 KALVTFITAGDPD---LATTEALIPLLAESGADIIELGVPFSDPMADG-------PTIQLSSERAL----AAGTTLPRI-   81 (267)
T ss_pred             CEEEEEECCCCCC---HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHHH-
T ss_conf             5489887171899---89999999999975999999789989866658-------99999999999----769849999-


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999865224784300112104542----47899999870996589963171110014689999999999871799
Q gi|254780200|r   96 RDQATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWS  171 (343)
Q Consensus        96 ~~qa~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~  171 (343)
                      ..+.+.+.+.    .+.++ +-|.|++|.    ++.-++++++.|++-+++-=|-|..        .+++.+.+.+.+..
T Consensus        82 ~~~~~~~r~~----~~~Pi-vlM~Y~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~ee--------~~~~~~~~~~~~l~  148 (267)
T PRK13135         82 LAMVRSVRRR----CQVPI-VLMGYYNPIFAYGLERFAADAAAAGVDGVLLVDLPPEE--------AEEFKACADRHGLD  148 (267)
T ss_pred             HHHHHHHHCC----CCCCE-EEEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH--------HHHHHHHHHHCCCC
T ss_conf             9999986335----89988-99842309988468999999997499747637899788--------89999999872961


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             86421334557800689999999999973389986699983367502676279988899999999999726675670478
Q gi|254780200|r  172 PSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKIC  251 (343)
Q Consensus       172 ~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~  251 (343)
                       -+.+|.+--+        .++|+.-.+...+  .....|--|+-=    ...+...++.+..+.+.+..++   +..++
T Consensus       149 -~I~lvsPtt~--------~~Ri~~i~~~s~G--FiY~Vs~~GvTG----~~~~~~~~~~~~i~~ik~~t~~---Pv~vG  210 (267)
T PRK13135        149 -VIFLLTPTSD--------ESRIRTVARLGRG--FVYYVSVTGVTG----ARSGVEATVGGNVAKIREKITV---PVVVG  210 (267)
T ss_pred             -EEEEECCCCC--------HHHHHHHHHCCCC--EEEEEECCCCCC----CCCCCHHHHHHHHHHHHHHCCC---CEEEE
T ss_conf             -8998089895--------7999999961898--189985456667----7644448899999999860689---84898


Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHH
Q ss_conf             6225777654430268999989976998399974405422125
Q gi|254780200|r  252 FQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLE  294 (343)
Q Consensus       252 fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lE  294 (343)
                      |    |=      ++.+...++. .+ -.-+|+==+|| +.+|
T Consensus       211 F----GI------~~~e~v~~i~-~~-ADGvIVGSaiV-k~ie  240 (267)
T PRK13135        211 F----GI------STPQQAADVA-AM-ADGVVVGSALV-KLFE  240 (267)
T ss_pred             E----CC------CCHHHHHHHH-CC-CCEEEECHHHH-HHHH
T ss_conf             1----67------9999999998-05-99999878999-9998


No 75 
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR).  Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=54.15  E-value=17  Score=17.05  Aligned_cols=58  Identities=5%  Similarity=0.083  Sum_probs=40.9

Q ss_pred             HHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             112104542478999998709965899631711100146899999999998717998642133
Q gi|254780200|r  116 WAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVP  178 (343)
Q Consensus       116 ~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~  178 (343)
                      .||--++.-...++.+++++.-..++.+     ||+++++-+-+.+.++.++....+.+++|+
T Consensus        66 ~~~~~~~~eL~r~v~~i~~~r~p~~iFl-----vgtCpseVIk~DLe~~A~rls~~~~v~Vv~  123 (396)
T cd01979          66 SALLNDYAELDRVVTQIKRDRNPSVIFL-----IGSCTTEVIKMDLEGAAPRLSAEIGVPILV  123 (396)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCCCCEEEE-----ECCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             4236966999999999997489947999-----725857777524999988753267955999


No 76 
>KOG4357 consensus
Probab=53.45  E-value=13  Score=18.06  Aligned_cols=29  Identities=31%  Similarity=0.423  Sum_probs=15.5

Q ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             77867999971788899998899999998
Q gi|254780200|r   15 KFGKIGVLLVNLGTPDGHDFFSLRRYLRE   43 (343)
Q Consensus        15 ~~~K~gvLL~n~G~P~~~~~~~V~~yL~~   43 (343)
                      .++||-.|++..-+|++|+.+++|||-.+
T Consensus        62 kkgktlmlfv~v~~psqp~~kd~rpftee   90 (164)
T KOG4357          62 KKGKTLMLFVGVSDPSQPDEKDIRPFTEE   90 (164)
T ss_pred             HCCCEEEEEEEECCCCCCCHHHCCCHHHH
T ss_conf             25866999997068899872112402589


No 77 
>KOG1322 consensus
Probab=53.26  E-value=18  Score=16.96  Aligned_cols=88  Identities=9%  Similarity=0.140  Sum_probs=55.8

Q ss_pred             CCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             30011210454247899999870996589963171110014689999999999871799864213345578006899999
Q gi|254780200|r  113 VVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQ  192 (343)
Q Consensus       113 ~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~  192 (343)
                      -|.+|   -+|-|...++++.+.|+++|+++--|=      +.|..+...++.   +....+.++-..-..|.--+-=++
T Consensus        34 lVpfg---n~pmI~hqieal~nsGi~~I~la~~y~------s~sl~~~~~k~y---~~~lgVei~~s~eteplgtaGpl~  101 (371)
T KOG1322          34 LVPFG---NKPMILHQIEALINSGITKIVLATQYN------SESLNRHLSKAY---GKELGVEILASTETEPLGTAGPLA  101 (371)
T ss_pred             CCCCC---CCHHHHHHHHHHHHCCCCEEEEEEECC------CHHHHHHHHHHH---HHCCCEEEEEEECCCCCCCCCHHH
T ss_conf             65427---630527789998757974799997138------289999999976---124555999982068876546699


Q ss_pred             HHHHHHHHCCCCCCEEEEEEC
Q ss_conf             999999733899866999833
Q gi|254780200|r  193 SIREHFESIQWTPEMLLVSFH  213 (343)
Q Consensus       193 ~I~~~l~~~~~~~~~llfSaH  213 (343)
                      .+++.|..+... ..++++-|
T Consensus       102 laR~~L~~~~~~-~ffVLnsD  121 (371)
T KOG1322         102 LARDFLWVFEDA-PFFVLNSD  121 (371)
T ss_pred             HHHHHHHHCCCC-CEEEECCC
T ss_conf             999886403798-67995577


No 78 
>PRK12677 xylose isomerase; Provisional
Probab=51.72  E-value=19  Score=16.80  Aligned_cols=17  Identities=35%  Similarity=0.440  Sum_probs=8.4

Q ss_pred             ECCCCCCHHHHHHHHHH
Q ss_conf             16898798999999999
Q gi|254780200|r  318 VPCLNSSNLSIDLLEKI  334 (343)
Q Consensus       318 vp~lN~~~~fi~~La~l  334 (343)
                      .|.|.....+.+.+|+.
T Consensus       340 ~~tl~~~~s~~~l~a~~  356 (389)
T PRK12677        340 VPTLAAGESLADLLADR  356 (389)
T ss_pred             CCCCCCCCCHHHHHHHH
T ss_conf             76457887899998767


No 79 
>PRK13121 consensus
Probab=51.46  E-value=19  Score=16.77  Aligned_cols=189  Identities=14%  Similarity=0.147  Sum_probs=89.4

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             99997178889999889999999874-89544117868889987666512574788999998707788740457775999
Q gi|254780200|r   20 GVLLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQ   98 (343)
Q Consensus        20 gvLL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~q   98 (343)
                      =|--+..|=|+-.   .-.++++.+- +.-++|++.-++--|+--|       +-+++.+++--   ..|.-+... ...
T Consensus        19 li~y~taG~P~~~---~s~~~~~~l~~~GaDiiElGiPfSDP~ADG-------PvIq~A~~rAL---~~G~~~~~~-~~~   84 (265)
T PRK13121         19 LIPFITAGDPDPA---KTVELMHALVEGGADVIELGVPFSDPMADG-------PVIQRASERAL---AHGVSLRQV-LAM   84 (265)
T ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH---HCCCCHHHH-HHH
T ss_conf             8988707189989---999999999976999999789889977658-------99999999999---779984677-999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999865224784300112104542----47899999870996589963171110014689999999999871799864
Q gi|254780200|r   99 ATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSL  174 (343)
Q Consensus        99 a~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~  174 (343)
                      .+.+.+.   ..+.++ +-|.|++|-    +++-++++++.|++-+++ |=.|--       -.+++.+.+.+.+.. .+
T Consensus        85 ~~~~r~~---~~~~Pi-vlM~Y~N~i~~yG~e~F~~~~~~aGvdGlIi-pDLP~e-------E~~~~~~~~~~~gl~-~I  151 (265)
T PRK13121         85 VKEFRET---NQTTPV-VLMGYANPIERMGYDAFAAAARAAGVDGVLV-VDYPPE-------ECEEFAAKMRAAGID-PI  151 (265)
T ss_pred             HHHHHCC---CCCCCE-EEEEHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCHH-------HHHHHHHHHHHCCCC-EE
T ss_conf             9983103---799998-9862145999971999999998729873434-899989-------999999999865996-68


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             213345578006899999999999733899866999833675026762799888999999999997266756704786
Q gi|254780200|r  175 RTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF  252 (343)
Q Consensus       175 ~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~f  252 (343)
                      .+|.+-..        .++++.-.+...+  .....|.-|+-=.   ++ .-..++.+..+.|.+.-++   +..++|
T Consensus       152 ~lvaPtt~--------~~Ri~~i~~~~~g--FiY~Vs~~GvTG~---~~-~~~~~~~~~i~~ik~~t~~---Pv~vGF  212 (265)
T PRK13121        152 FLLAPTST--------DERIAAVARVASG--YVYYVSLKGVTGA---AT-LDVSSVAAKLPAIRSHVPL---PVGVGF  212 (265)
T ss_pred             EEECCCCC--------HHHHHHHHHHCCC--EEEEEECCCCCCC---CC-CCHHHHHHHHHHHHHCCCC---CEEEEC
T ss_conf             99589998--------9999999962898--0999755556677---75-6628899999999854799---859976


No 80 
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558   This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=50.62  E-value=20  Score=16.68  Aligned_cols=191  Identities=21%  Similarity=0.337  Sum_probs=102.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHC-------CCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf             87404577759999999986522-------47843001121045424789999987099658996317111001468999
Q gi|254780200|r   86 KNESILRTHTRDQATNLAKRLES-------ISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQ  158 (343)
Q Consensus        86 gg~SPL~~~t~~qa~~L~~~L~~-------~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~  158 (343)
                      |||.| +..|..|.+.|-+.+.+       .-++-+++--||-   -.|.+..|++.|..||=.            |  +
T Consensus       111 GGGTP-~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~---~~e~~~~L~~~GFNRlS~------------G--v  172 (462)
T TIGR00538       111 GGGTP-TYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYL---TKEVIKALRDEGFNRLSF------------G--V  172 (462)
T ss_pred             CCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC---CHHHHHHHHHCCCCEEEC------------C--E
T ss_conf             78983-3378899999999999873201158447765237413---788999999758966423------------5--2


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999998717998642133455780068999999999997338998669998336750267627998889999999999
Q gi|254780200|r  159 DKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLK  238 (343)
Q Consensus       159 ~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~  238 (343)
                      ..+...+++.     +.-|.+    ..+|....+.+|++  .+..-+.-||   -|||.-       ...-..+|.+.|+
T Consensus       173 QDfd~~VQ~a-----vnR~QP----~e~i~~~~~~~R~~--Gf~SiN~DLI---YGLP~Q-------t~esF~~Tl~~v~  231 (462)
T TIGR00538       173 QDFDKEVQQA-----VNRIQP----EEMIFELMEKAREA--GFESINLDLI---YGLPKQ-------TKESFEKTLEKVA  231 (462)
T ss_pred             ECCCHHHHHH-----HCCCCC----HHHHHHHHHHHHHC--CCCEEEEEEE---CCCCCC-------CHHHHHHHHHHHH
T ss_conf             1078555444-----313486----89999999999866--9827874201---388887-------8678999999985


Q ss_pred             HHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCC-----CC
Q ss_conf             9726675670478622577765443026899998997699839997440542212558887589999999759-----97
Q gi|254780200|r  239 EFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGG-----GE  313 (343)
Q Consensus       239 ~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~G-----g~  313 (343)
                      +.   .+++.. +| | +-..||++|    +...+.++      ..|+  .-|=|+.|.++    -..+.++|     ..
T Consensus       232 ~L---nPDRlA-vF-n-yAyvP~vk~----~q~k~~~~------~LPS--~~~KL~Il~~~----I~~L~~~gY~fIGMD  289 (462)
T TIGR00538       232 EL---NPDRLA-VF-N-YAYVPWVKP----AQRKIPEE------ALPS--AEEKLEILEET----IAFLTEAGYVFIGMD  289 (462)
T ss_pred             HC---CCCEEH-HH-H-HHHHCCHHH----HHCCCCHH------CCCC--HHHHHHHHHHH----HHHHHHCCCEEECCC
T ss_conf             31---877001-21-0-222101577----85027620------0588--78999999999----999975797585144


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             5898168987989999999999998428
Q gi|254780200|r  314 KFTQVPCLNSSNLSIDLLEKITRRELMG  341 (343)
Q Consensus       314 ~~~rvp~lN~~~~fi~~La~lv~~~l~g  341 (343)
                      +|.+    -|+++.|+-=..-..++-||
T Consensus       290 HFAk----pddELavAqr~geL~RNFQG  313 (462)
T TIGR00538       290 HFAK----PDDELAVAQRKGELHRNFQG  313 (462)
T ss_pred             CCCC----CCHHHHHHHHCCCCCCCCCC
T ss_conf             5779----71389999850530005765


No 81 
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=50.13  E-value=16  Score=17.42  Aligned_cols=30  Identities=20%  Similarity=0.436  Sum_probs=23.0

Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             843001121045424789999987099658996
Q gi|254780200|r  111 SIVVDWAMRYGKPSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       111 ~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      ..-|.+|   +.|-|.-.++.|.+.|+++++++
T Consensus        23 K~Lvev~---gr~ii~~~i~~L~~~gi~e~vvV   52 (239)
T COG1213          23 KALVEVG---GREIIYRTIENLAKAGITEFVVV   52 (239)
T ss_pred             CHHHHCC---CEEEHHHHHHHHHHCCCCEEEEE
T ss_conf             1443158---86738999999987698639999


No 82 
>pfam06888 Put_Phosphatase Putative Phosphatase. This family contains a number of putative eukaryotic acid phosphatases. Some family members represent the products of the PSI14 phosphatase family in Lycopersicon esculentum (Tomato).
Probab=50.00  E-value=20  Score=16.62  Aligned_cols=21  Identities=38%  Similarity=0.754  Sum_probs=10.5

Q ss_pred             CCCHHHHHHHHHH--CCCCEEEEE
Q ss_conf             5424789999987--099658996
Q gi|254780200|r  122 KPSVKEIINNLRE--EGCDRLLIF  143 (343)
Q Consensus       122 ~P~i~~~l~~l~~--~g~~~ii~l  143 (343)
                      .|-+.++++.+++  .|++ ++++
T Consensus        73 ~pgm~~li~~l~~~~~~~d-~~Ii   95 (234)
T pfam06888        73 VPGMVRLIKFLAKNGLGCD-LIII   95 (234)
T ss_pred             CCCHHHHHHHHHHCCCCCE-EEEE
T ss_conf             9458999999984767831-9999


No 83 
>pfam05013 FGase N-formylglutamate amidohydrolase. Formylglutamate amidohydrolase (FGase) catalyses the terminal reaction in the five-step pathway for histidine utilisation in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolysed to produce L-glutamate plus formate.
Probab=49.70  E-value=20  Score=16.59  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH
Q ss_conf             0689999999999973389986699983367502
Q gi|254780200|r  185 DYISALAQSIREHFESIQWTPEMLLVSFHQMPVS  218 (343)
Q Consensus       185 ~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~  218 (343)
                      -|=+++.+.|++..+..+   ..++++.||+|-.
T Consensus       113 PyH~~l~~~i~~~~~~~g---~~~lid~HS~~~~  143 (221)
T pfam05013       113 PYHAALAALLARLRARFG---RAVLIDCHSFTPV  143 (221)
T ss_pred             HHHHHHHHHHHHHHHHCC---CEEEEEECCCCCC
T ss_conf             999999999999998579---8799995279865


No 84 
>PRK13113 consensus
Probab=49.21  E-value=21  Score=16.53  Aligned_cols=191  Identities=16%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHCCC-HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             679999717888999988999999987489-5441178688899876665125747889999987077887404577759
Q gi|254780200|r   18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLD-KRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTR   96 (343)
Q Consensus        18 K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D-~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~   96 (343)
                      |.=|.-+..|=|+-   +.-.+.++.+-.. -++|++.-++--|+--|       +-+++..++--   .+|.-+... .
T Consensus        17 ~ali~yitaG~P~~---e~s~~~~~~l~~~GaDiiElGiPFSDP~ADG-------PvIq~A~~rAL---~~G~~~~~~-~   82 (263)
T PRK13113         17 KAFVAYVMAGDPDY---DTSLEVMRGLPAAGVDIIELGMPFTDPMADG-------PTIQLAGQRAL---EGGMTLDRT-L   82 (263)
T ss_pred             CEEEEEECCCCCCH---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH---HCCCCHHHH-H
T ss_conf             54898873828997---9999999999976999999789888877658-------99999999999---779838899-9


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999865224784300112104542----478999998709965899631711100146899999999998717998
Q gi|254780200|r   97 DQATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSP  172 (343)
Q Consensus        97 ~qa~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~  172 (343)
                      .+.+.+.+.   ....++ +-|.|++|.    +++-++++++.|++-+++ |=.|.-       -.+++.+.+.+.+.. 
T Consensus        83 ~~v~~~r~~---~~~~Pi-vlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~e-------E~~~~~~~~~~~~l~-  149 (263)
T PRK13113         83 DMVRAFRKE---DDTTPI-VMMGYYNPIYSRGVDRFLAEAKEAGIDGLIV-VDLPPE-------EDSELCLPAQAAGLN-  149 (263)
T ss_pred             HHHHHHHCC---CCCCCE-EEEECHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHH-------HHHHHHHHHHHCCCC-
T ss_conf             999975123---899888-9983136898856999999987779436971-799978-------889999999977986-


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             64213345578006899999999999733899866999833675026762799888999999999997266756704786
Q gi|254780200|r  173 SLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF  252 (343)
Q Consensus       173 ~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~f  252 (343)
                      -+.+|.+=..        -++|+.-.+...  ......|.-|+-=   .+ .+...+..+..+.|.+..+.   +..++|
T Consensus       150 ~I~lvaPtt~--------~~Ri~~i~~~a~--gFiY~Vs~~GvTG---~~-~~~~~~~~~~i~~ik~~t~~---Pv~vGF  212 (263)
T PRK13113        150 FIRLATPTTD--------DRRLPKVLQNTS--GFVYYVSITGITG---AA-AAQAADVAPEVARIKAATDL---PVIVGF  212 (263)
T ss_pred             EEEEECCCCC--------HHHHHHHHHCCC--CCEEEEECCCCCC---CC-CCCHHHHHHHHHHHHHCCCC---CEEEEC
T ss_conf             7999479999--------999999983389--8489983455668---77-55437799999999854799---889983


No 85 
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=49.15  E-value=21  Score=16.53  Aligned_cols=45  Identities=20%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCH---HHHHCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             599999999865224784300---1121045424789999987099658996
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVD---WAMRYGKPSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~---~amry~~P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      |...+.++++..+    +++-   ..--..+--|+++|+++++.|+++||+|
T Consensus        61 T~~~~~~I~~~~~----~~~v~HLtC~~~t~~e~~~~L~~y~~~Gi~~ilAL  108 (302)
T TIGR00676        61 TVRIVRRIKKETG----IPTVPHLTCIGSTREEIEEILREYRELGIRNILAL  108 (302)
T ss_pred             HHHHHHHHHHHCC----CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8999999987328----86300000236898999999999987488679874


No 86 
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=48.92  E-value=21  Score=16.50  Aligned_cols=86  Identities=17%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             EEEEEECCCCHHHHHHCCCCH-HHHHHHHHHHHHHHC-----------CCCCCCEEEEECCC-----------CCCCCCC
Q ss_conf             699983367502676279988-899999999999726-----------67567047862257-----------7765443
Q gi|254780200|r  207 MLLVSFHQMPVSYLLKGDPYG-CHCHKTARLLKEFLS-----------WPDDRFKICFQSRF-----------GRIKCLE  263 (343)
Q Consensus       207 ~llfSaHglP~~~~~~gDpY~-~q~~~t~~~i~~~l~-----------~~~~~~~l~fQSr~-----------Gp~~WL~  263 (343)
                      ++=+-..|+-.-.+.-|=||. .+-.+.++.+++.+.           -....|-+.-.|+.           .+..|..
T Consensus      1368 KIGLGvMGlADlLikLGIPYnSeEg~~fa~kvM~fI~~~A~~aS~eLAkERG~FPlfe~S~Y~~g~~PveG~y~~e~~~~ 1447 (1748)
T PRK08332       1368 RIGVGMMGLADALFKLGIPYNSEEGFDFMRKATEYLTFYAYKRSVEAAKERGPFPLYDKTEYKDGELPVEGFYHPEIWNL 1447 (1748)
T ss_pred             CCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCC
T ss_conf             02400556999999738987868999999999999999999999999980699998402205566677566654222145


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEC------CHHHHCCH
Q ss_conf             0268999989976998399974------40542212
Q gi|254780200|r  264 PPTDKTVEKLAHDGIKSLAIIT------PGFSSDCL  293 (343)
Q Consensus       264 P~t~~~l~~L~~~G~k~v~v~p------~gFvsD~l  293 (343)
                      |. ++.+++..+.|++|..+..      +|.++||.
T Consensus      1448 ~w-d~l~~ei~~~gvRNAtvTTIAPTGTISmIAdtS 1482 (1748)
T PRK08332       1448 PW-DELVEEIKKYGLRNAMVTTCPPTGSVSMIADTS 1482 (1748)
T ss_pred             CH-HHHHHHHHHCCCCCEEEEEECCCCCEEEEECCC
T ss_conf             46-889998740354420145567876357750677


No 87 
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=48.37  E-value=21  Score=16.45  Aligned_cols=53  Identities=11%  Similarity=0.197  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             544302689999899769983999744054221255888758999999975997589816898
Q gi|254780200|r  260 KCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLN  322 (343)
Q Consensus       260 ~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN  322 (343)
                      .=.-|+|.|-++.+.+-+.++|+|.|=.     -+++     -..+.+.+.-..+...+|+-+
T Consensus       343 qt~NPSt~dil~Ai~~~~a~~ViiLPNn-----~Nii-----laA~qaa~~~~k~V~VipT~s  395 (530)
T TIGR03599       343 QTMNPSTEDILKAIEKVNAKNVFVLPNN-----KNII-----LAAEQAAELADKNVVVIPTKT  395 (530)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEECCC-----CHHH-----HHHHHHHHHCCCCEEEEECCC
T ss_conf             9899689999999985798739994799-----1088-----999999874289789994798


No 88 
>pfam06685 DUF1186 Protein of unknown function (DUF1186). This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=47.79  E-value=22  Score=16.39  Aligned_cols=77  Identities=23%  Similarity=0.179  Sum_probs=30.0

Q ss_pred             HHHCCCCHHHHHHHHHHH-HHHHCCCCCCCEEEEECCCCCCCCCCH-HHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHH
Q ss_conf             762799888999999999-997266756704786225777654430-268999989976998399974405422125588
Q gi|254780200|r  220 LLKGDPYGCHCHKTARLL-KEFLSWPDDRFKICFQSRFGRIKCLEP-PTDKTVEKLAHDGIKSLAIITPGFSSDCLETSY  297 (343)
Q Consensus       220 ~~~gDpY~~q~~~t~~~i-~~~l~~~~~~~~l~fQSr~Gp~~WL~P-~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~  297 (343)
                      +..|-.-+.++....+.+ ..++.-.+   +.+|+|=+-..-=|.| .+...+.+.-+.|     .+.+.|+  .+|..+
T Consensus       141 v~~g~isRe~vi~Yf~~Lf~~~l~r~~---s~vW~sLv~~~~~L~p~EL~e~Ir~af~~g-----Lvd~~fi--~~edvE  210 (249)
T pfam06685       141 VAEGVISREEVIRYFRELFNEKLEKEP---SYVWTSLVASSCALYPGELYEDIKKAFEDG-----LVDSFFI--SLEDVE  210 (249)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-----CCCCCCC--CHHHHH
T ss_conf             980765589999999999861233585---157999999998768798899999998769-----9871005--799999


Q ss_pred             HHHHHHHHH
Q ss_conf             875899999
Q gi|254780200|r  298 EIAHEAKEI  306 (343)
Q Consensus       298 Eidie~~e~  306 (343)
                      ..=.+.+|.
T Consensus       211 ~~l~~~~e~  219 (249)
T pfam06685       211 TILAEEKER  219 (249)
T ss_pred             HHHHHHHHH
T ss_conf             999864589


No 89 
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=47.53  E-value=22  Score=16.36  Aligned_cols=74  Identities=14%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCC---------CCCCHHHH
Q ss_conf             542478999998709965899631711100146899999999998717998----64213345---------57800689
Q gi|254780200|r  122 KPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSP----SLRTVPPY---------YEDSDYIS  188 (343)
Q Consensus       122 ~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~----~~~~I~~~---------~~~p~yI~  188 (343)
                      -|..+..+++|++.|++  +++-+-|.....+. .++    ++..+.+...    .-.++-++         +.+|.-.+
T Consensus        70 FPdp~~mv~~L~~~G~k--~v~~i~P~i~~~~~-~~~----~e~~~~g~~v~~~~G~~~~~~~w~g~~~~~Dftnp~ar~  142 (317)
T cd06594          70 YPGLDELIEELKARGIR--VLTYINPYLADDGP-LYY----EEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARD  142 (317)
T ss_pred             CCCHHHHHHHHHHCCCE--EEEECCCCCCCCCC-HHH----HHHHHCCCEEECCCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf             96989999999988998--99966887467982-669----999979968888999855641467873430589989999


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999997338
Q gi|254780200|r  189 ALAQSIREHFESIQ  202 (343)
Q Consensus       189 a~~~~I~~~l~~~~  202 (343)
                      .|.+++++.+.+.+
T Consensus       143 Ww~~~~~~~~~~~G  156 (317)
T cd06594         143 WFKQVIKEMLLDLG  156 (317)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998717


No 90 
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=47.20  E-value=13  Score=18.07  Aligned_cols=92  Identities=13%  Similarity=0.102  Sum_probs=42.1

Q ss_pred             CCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-HH
Q ss_conf             430011210454247899999870996589963171110014----6899999999998717998642133455780-06
Q gi|254780200|r  112 IVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAAT----TGTAQDKVFQELIHMRWSPSLRTVPPYYEDS-DY  186 (343)
Q Consensus       112 ~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sT----tgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p-~y  186 (343)
                      ..|..||+.-.-.   +++.|.+.|+.   .+|.+|.-+++-    ..++.+.+..++++ +.. ++-+=+-..++. +|
T Consensus        73 ~~~~~am~~L~~~---V~~~l~~~Gv~---av~~~P~s~~~~~gr~~~~~l~~i~~~l~~-gfv-Pvl~GDVv~d~~~g~  144 (252)
T COG1608          73 SLTHLAMLELNSI---VVDALLDAGVR---AVSVVPISFSTFNGRILYTYLEAIKDALEK-GFV-PVLYGDVVPDDDNGY  144 (252)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHCCCC---CCCCCCCCEEECCCCEEECHHHHHHHHHHC-CCE-EEEECCEEECCCCCE
T ss_conf             9999999999999---99999866985---322268640331770322029999999876-987-623334687489854


Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             89999999999973389986699983
Q gi|254780200|r  187 ISALAQSIREHFESIQWTPEMLLVSF  212 (343)
Q Consensus       187 I~a~~~~I~~~l~~~~~~~~~llfSa  212 (343)
                      ==...+.|-.+|.+. ..++.++|--
T Consensus       145 ~IiSGDdIv~~LA~~-l~pd~v~f~t  169 (252)
T COG1608         145 EIISGDDIVLHLAKE-LKPDRVIFLT  169 (252)
T ss_pred             EEEECCHHHHHHHHH-HCCCEEEEEE
T ss_conf             898511899999997-4987799984


No 91 
>pfam05378 Hydant_A_N Hydantoinase/oxoprolinase N-terminal region. This family is found at the N-terminus of the pfam01968 family.
Probab=47.09  E-value=22  Score=16.31  Aligned_cols=47  Identities=19%  Similarity=0.369  Sum_probs=34.7

Q ss_pred             CCCCCH----HHHHHHHHHHHCCCCCEEEECC-HHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             654430----2689999899769983999744-0542212558887589999999759
Q gi|254780200|r  259 IKCLEP----PTDKTVEKLAHDGIKSLAIITP-GFSSDCLETSYEIAHEAKEIFVNGG  311 (343)
Q Consensus       259 ~~WL~P----~t~~~l~~L~~~G~k~v~v~p~-gFvsD~lETl~Eidie~~e~~~e~G  311 (343)
                      +.-++|    .+.+.++++.++|+++|+|+.. ||.....|.      ..+|.++|.|
T Consensus       124 G~~i~~ld~~~v~~~~~~l~~~gv~aiAI~~~fS~~Np~hE~------~v~eii~e~g  175 (175)
T pfam05378       124 GEVIKPLDEEAVREALKELKDAGVEAVAVSLLHSYRNPEHEL------RVKEIIREEG  175 (175)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH------HHHHHHHHCC
T ss_conf             619724899999999999997799899999532779839999------9999999529


No 92 
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=46.94  E-value=22  Score=16.30  Aligned_cols=28  Identities=14%  Similarity=0.248  Sum_probs=10.3

Q ss_pred             HHHHHHCCCCCEEEECCHHHHCCHHHHHHH
Q ss_conf             998997699839997440542212558887
Q gi|254780200|r  270 VEKLAHDGIKSLAIITPGFSSDCLETSYEI  299 (343)
Q Consensus       270 l~~L~~~G~k~v~v~p~gFvsD~lETl~Ei  299 (343)
                      +.+|+++  -.+.++--|.-|-|---|+|+
T Consensus       203 ~~~La~~--vD~miVVGg~nSsNT~rL~ei  230 (281)
T PRK12360        203 ADELSKE--VDVMFVIGGKHSSNTQKLVKI  230 (281)
T ss_pred             HHHHHHH--CCEEEEECCCCCCCHHHHHHH
T ss_conf             9999975--999999888899648999999


No 93 
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=46.25  E-value=23  Score=16.23  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             457775999999998652247--8430011210454247899999870
Q gi|254780200|r   90 ILRTHTRDQATNLAKRLESIS--SIVVDWAMRYGKPSVKEIINNLREE  135 (343)
Q Consensus        90 PL~~~t~~qa~~L~~~L~~~~--~~~V~~amry~~P~i~~~l~~l~~~  135 (343)
                      |-....+.+...+.++.+..+  +|.|.+---+....+.+++++++..
T Consensus        12 p~~~~~~~~~~~~~~~~~gaDiVE~RvD~~~~~~~~~v~~~l~~lr~~   59 (238)
T PRK13575         12 PQLSIEETLIQKINHRIDAIDVLELRIDQWENVTVDQVAEMITKLKVM   59 (238)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             864377999999872447875899985401237989999999999985


No 94 
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=46.21  E-value=15  Score=17.59  Aligned_cols=36  Identities=33%  Similarity=0.653  Sum_probs=27.2

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             889987778679999717888999988999999987489544117
Q gi|254780200|r    9 RNHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVEL   53 (343)
Q Consensus         9 ~~~p~~~~~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~   53 (343)
                      +.||....+..=|+|+       |+  ++|-||..||+|....+-
T Consensus       295 ~~hP~l~~~~~~VvlL-------PD--S~R~YmtK~~nD~Wl~~~  330 (527)
T TIGR01137       295 EDHPELKEDQVIVVLL-------PD--SIRNYMTKFLNDEWLLDN  330 (527)
T ss_pred             HHCCCCCCCCEEEEEE-------CC--CCCHHHHHEECHHHHHHC
T ss_conf             7267888887899984-------68--730001001043788645


No 95 
>PRK13116 consensus
Probab=45.60  E-value=24  Score=16.16  Aligned_cols=248  Identities=10%  Similarity=0.110  Sum_probs=109.5

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH-HHHHCCCCCCCHHHHHHHH
Q ss_conf             99997178889999889999999874-895441178688899876665125747889999-9870778874045777599
Q gi|254780200|r   20 GVLLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHAY-AKIWNTAKNESILRTHTRD   97 (343)
Q Consensus        20 gvLL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y-~~Iw~~~gg~SPL~~~t~~   97 (343)
                      =|-.+.-|-|+-   +.-.+.+..+- +.-++|++.-++--|+--|       +-+++.+ +.+    .+|.-+.. ...
T Consensus        19 lI~yitaG~P~~---~~s~~~l~~l~~~GaDiiElGiPFSDP~ADG-------PvIQ~A~~rAL----~~G~~~~~-~~~   83 (278)
T PRK13116         19 FVPFIMLSDPSP---EEAFQIISTAIEAGADALELGVPFSDPVADG-------PTVAESHLRAL----DGGATVDS-ALE   83 (278)
T ss_pred             EEEEECCCCCCH---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHH-HHH
T ss_conf             898854848998---9999999999966999999799988856668-------99999999999----76986789-999


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             999999865224784300112104542----4789999987099658996317111001468999999999987179986
Q gi|254780200|r   98 QATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPS  173 (343)
Q Consensus        98 qa~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~  173 (343)
                      +.+++++..   .+.++ +-|.|.+|.    ++.-++++++.|++-+++ |=-|.-       -.+.+.+...+.+.. .
T Consensus        84 ~v~~ir~~~---~~~Pi-vlM~Y~N~i~~~G~e~F~~~~~~aGvdGlIi-pDLP~e-------E~~~~~~~~~~~~i~-~  150 (278)
T PRK13116         84 QIKRVRAAY---PEVPI-GMLIYGNVPFTRGLDRFYQEFAEAGADSILL-PDVPVR-------EGAPFSAAAAAAGID-P  150 (278)
T ss_pred             HHHHHCCCC---CCCCE-EEEECCCHHHHCCHHHHHHHHHHCCCCEEEE-CCCCHH-------HHHHHHHHHHHCCCC-E
T ss_conf             999840358---98768-9980572887727999999997769758994-699978-------889999999865766-6


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             42133455780068999999999997338998669998336750267627998889999999999972667567047862
Q gi|254780200|r  174 LRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ  253 (343)
Q Consensus       174 ~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQ  253 (343)
                      +.++.+ -..+       ++++.-.+...  ......|--|+-=   .+.+.....+.+..+.|.+.-+.   +..++| 
T Consensus       151 I~l~~p-tt~~-------~ri~~I~~~s~--GFiY~VS~~GvTG---~~~~~~~~~l~~~i~~ik~~t~~---Pv~vGF-  213 (278)
T PRK13116        151 IYIAPA-NASE-------KTLEGVSAASK--GYIYAISRDGVTG---TERESSTDGLSAVVDNIKKFDGA---PILLGF-  213 (278)
T ss_pred             EEEECC-CCCH-------HHHHHHHHHCC--CEEEEEECCCCCC---CCCCCCHHHHHHHHHHHHHCCCC---CEEEEC-
T ss_conf             999379-9959-------99999997189--7399986352226---88666678999999999845799---879981-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             25777654430268999989976998399974405422125588875899999997599758981689879899999999
Q gi|254780200|r  254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEK  333 (343)
Q Consensus       254 Sr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~  333 (343)
                         |      =++.+..++..+.+..-|+| ==+|| +.+              .+++-..=.....+++-..++..|++
T Consensus       214 ---G------Is~~e~v~~~~~~~aDGVIV-GSAiV-k~I--------------e~~~~~~~~~~~~~~~~~~~~~~l~~  268 (278)
T PRK13116        214 ---G------ISSPQHVADAIAAGASGAIT-GSAIT-KII--------------ASHCEGEHPNPSTIRDMDGLKKDLTE  268 (278)
T ss_pred             ---C------CCCHHHHHHHHHCCCCEEEE-CHHHH-HHH--------------HHCCCCCCCCCHHHCCHHHHHHHHHH
T ss_conf             ---6------79899999998668999998-77999-999--------------85276555550112369999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780200|r  334 ITRR  337 (343)
Q Consensus       334 lv~~  337 (343)
                      -|+.
T Consensus       269 ~v~~  272 (278)
T PRK13116        269 FISA  272 (278)
T ss_pred             HHHH
T ss_conf             9999


No 96 
>TIGR00284 TIGR00284 dihydropteroate synthase-related protein; InterPro: IPR005236    The proteins of this family have been found so far only in the four archaeal species. The central region of the proteins shows considerable homology to the amino-terminal half of dihydropteroate synthases. .
Probab=44.81  E-value=24  Score=16.08  Aligned_cols=163  Identities=15%  Similarity=0.108  Sum_probs=90.5

Q ss_pred             CCCCEEEEEECCCCC-CCCCHHHHHHHHHHHCCCH--HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             778679999717888-9999889999999874895--4411786888998766651257478899999870778874045
Q gi|254780200|r   15 KFGKIGVLLVNLGTP-DGHDFFSLRRYLREFLLDK--RVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESIL   91 (343)
Q Consensus        15 ~~~K~gvLL~n~G~P-~~~~~~~V~~yL~~fl~D~--~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL   91 (343)
                      .|-+.|+=++.+|.| ...+...|..-++..++=-  .+|.+                -+....|.|+.|-   -|-|-.
T Consensus       185 ~~~r~gad~v~lG~~~~~~d~d~vk~kvk~a~d~~kD~pv~~----------------dt~~~~el~ea~~---aGAs~v  245 (529)
T TIGR00284       185 RRLRDGADMVALGTGVFDDDADKVKEKVKIALDLLKDSPVSV----------------DTESLKELKEAVK---AGASFV  245 (529)
T ss_pred             HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE----------------ECCCHHHHHHHHH---CCCCEE
T ss_conf             998559968984575466677899999999997207860686----------------2688789999986---386568


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC----CCH-------HHHHHHHHHCCCCEEEEEE-CCHHHHH-HHHHHHH
Q ss_conf             7775999999998652247843001121045----424-------7899999870996589963-1711100-1468999
Q gi|254780200|r   92 RTHTRDQATNLAKRLESISSIVVDWAMRYGK----PSV-------KEIINNLREEGCDRLLIFP-LYPQYSA-ATTGTAQ  158 (343)
Q Consensus        92 ~~~t~~qa~~L~~~L~~~~~~~V~~amry~~----P~i-------~~~l~~l~~~g~~~ii~lP-LyPqyS~-sTtgS~~  158 (343)
                      ......-...|....+..++.-|..-..+-.    -.|       .+.++.+++.|+++|++=| |-|-.-. ++--+++
T Consensus       246 ~~~~~~n~~eL~~~~k~~e~Afvv~p~n~~~nyvPetieG~~~~l~~~vkkl~~~G~~K~~aDP~LsPpl~gGCsl~eSi  325 (529)
T TIGR00284       246 LSLDVENLEELAEIKKLSEAAFVVVPTNQKENYVPETIEGKIKELAEAVKKLKDSGYEKVVADPVLSPPLRGGCSLVESI  325 (529)
T ss_pred             EECCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf             72471027889860689987389842577756557420103789999999998669846998665686100131488999


Q ss_pred             HHHHHHHHHHCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHH
Q ss_conf             999999987179986421-----334557800689999999999
Q gi|254780200|r  159 DKVFQELIHMRWSPSLRT-----VPPYYEDSDYISALAQSIREH  197 (343)
Q Consensus       159 ~~~~~~l~~~~~~~~~~~-----I~~~~~~p~yI~a~~~~I~~~  197 (343)
                      ..+.+ .++.....++-|     -.-+-.+..=++|+-..|...
T Consensus       326 i~~r~-~~~~l~d~Pl~fg~~NVtEl~dADS~GvnALLaaia~E  368 (529)
T TIGR00284       326 IAFRR-VKKLLKDVPLLFGVANVTELVDADSIGVNALLAAIAAE  368 (529)
T ss_pred             HHHHH-HHHHHCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             99999-99872668533202335543320511389999999987


No 97 
>TIGR02134 transald_staph transaldolase; InterPro: IPR011861    This small family of proteins belong to the transaldolases. Coxiella and Staphylococcus lack members of the known transaldolase families and appear to require a transaldolase activity for completion of the pentose phosphate pathway..
Probab=44.36  E-value=13  Score=17.99  Aligned_cols=12  Identities=33%  Similarity=0.346  Sum_probs=6.0

Q ss_pred             HHHHHHHHH-HCC
Q ss_conf             689999899-769
Q gi|254780200|r  266 TDKTVEKLA-HDG  277 (343)
Q Consensus       266 t~~~l~~L~-~~G  277 (343)
                      +.|.+++|+ ..|
T Consensus       199 ~~d~~aKlptllG  211 (237)
T TIGR02134       199 AADVVAKLPTLLG  211 (237)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             0688874021027


No 98 
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family; InterPro: IPR003500   This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).    Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit.   Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process.
Probab=44.34  E-value=25  Score=16.03  Aligned_cols=18  Identities=17%  Similarity=-0.055  Sum_probs=7.9

Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             799888999999999997
Q gi|254780200|r  223 GDPYGCHCHKTARLLKEF  240 (343)
Q Consensus       223 gDpY~~q~~~t~~~i~~~  240 (343)
                      .|.|++.+..-++.|.+.
T Consensus        38 ~~DYPdYA~~Va~~v~~~   55 (146)
T TIGR00689        38 SVDYPDYAKLVAQKVVEG   55 (146)
T ss_pred             CCCCHHHHHHHHHHHHCC
T ss_conf             988747899999998628


No 99 
>TIGR01258 pgm_1 phosphoglycerate mutase 1 family; InterPro: IPR005952    Most members of this family are phosphoglycerate mutase (5.4.2.1 from EC). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate.  2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (5.4.2.4 from EC). ; GO: 0016868 intramolecular transferase activity phosphotransferases, 0006096 glycolysis.
Probab=44.12  E-value=17  Score=17.15  Aligned_cols=14  Identities=14%  Similarity=0.223  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             68999999999987
Q gi|254780200|r  154 TGTAQDKVFQELIH  167 (343)
Q Consensus       154 tgS~~~~~~~~l~~  167 (343)
                      .|-|++.+.+++..
T Consensus       183 HGNSLRALvKhL~~  196 (248)
T TIGR01258       183 HGNSLRALVKHLEG  196 (248)
T ss_pred             CCHHHHHHHHHHHC
T ss_conf             28048999998612


No 100
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=43.23  E-value=25  Score=15.92  Aligned_cols=25  Identities=12%  Similarity=0.275  Sum_probs=14.4

Q ss_pred             HHCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             21045424789999987099658996
Q gi|254780200|r  118 MRYGKPSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       118 mry~~P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      +.+-+-.|++-++++ ++|+|-+...
T Consensus       101 LQdpPe~Ip~li~~~-~~G~DvV~~~  125 (324)
T PRK10714        101 LQNPPEEIPRLVAKA-DEGYDVVGTV  125 (324)
T ss_pred             CCCCHHHHHHHHHHH-HCCCCEEEEE
T ss_conf             875988999999987-0488689998


No 101
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=42.09  E-value=26  Score=15.80  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=13.9

Q ss_pred             CCCCCCHHHHHHHHHHHHC-CCCCEEEE--CCHHHHC
Q ss_conf             7654430268999989976-99839997--4405422
Q gi|254780200|r  258 RIKCLEPPTDKTVEKLAHD-GIKSLAII--TPGFSSD  291 (343)
Q Consensus       258 p~~WL~P~t~~~l~~L~~~-G~k~v~v~--p~gFvsD  291 (343)
                      |++|+.|.|.+...++.++ |.+-|+|-  .|||+.+
T Consensus       155 ~g~~Ts~~~v~~~~~~~~~lGk~PV~v~ke~pGFi~N  191 (308)
T PRK06129        155 PAPWTAPATVARAHALYRAAGQSPVRLRREIDGFVLN  191 (308)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf             7999898999999999998399889990256215899


No 102
>PRK13118 consensus
Probab=41.80  E-value=27  Score=15.77  Aligned_cols=222  Identities=15%  Similarity=0.153  Sum_probs=101.8

Q ss_pred             CCEE-EEEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             8679-9997178889999889999999874-8954411786888998766651257478899999870778874045777
Q gi|254780200|r   17 GKIG-VLLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTH   94 (343)
Q Consensus        17 ~K~g-vLL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~   94 (343)
                      +|+| +..+..|=|+   .+.-.+++..+- +.-++|++.-++--|+--|       +-++..+++--   .+|.-+.. 
T Consensus        15 ~~~ali~yitaG~P~---~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADG-------PvIq~A~~rAL---~~G~~~~~-   80 (269)
T PRK13118         15 NRKALVPFVTAGDPS---PEASVPLLHGLVAAGADVIELGMPFSDPMADG-------PAIQLASERAL---AAGQGLAD-   80 (269)
T ss_pred             CCCEEEEEECCCCCC---HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH---HCCCCHHH-
T ss_conf             995599887171899---89999999999976999999789888866657-------99999999999---67986889-


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             599999999865224784300112104542----4789999987099658996317111001468999999999987179
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRW  170 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~  170 (343)
                      ...+.+.+.+..   .+.++ +-|.|.+|.    +++-++++++.|++-+++ |=.|.       .-.+++.+...+.+.
T Consensus        81 ~~~~v~~~r~~~---~~~Pi-vlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~-------ee~~~~~~~~~~~gl  148 (269)
T PRK13118         81 VLQMVREFRQGD---QTTPV-VLMGYLNPIEIYGYERFVAQAKEAGVDGLIL-VDLPP-------EEADELRAPAQAHGL  148 (269)
T ss_pred             HHHHHHHHHHCC---CCCCE-EEEEECCHHHHHHHHHHHHHHHHCCCCEEEC-CCCCH-------HHHHHHHHHHHHCCC
T ss_conf             999999986438---99998-9974000787863999999999859974645-89997-------899999999997598


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             98642133455780068999999999997338998669998336750267627998889999999999972667567047
Q gi|254780200|r  171 SPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKI  250 (343)
Q Consensus       171 ~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l  250 (343)
                       ..+.+|.+=..        -++|+.-.+...  ......|.-|+-=.   ++. -...+.+..+.+.+.-+.   +..+
T Consensus       149 -~~I~lvaPtt~--------~~Ri~~i~~~a~--gFiY~vs~~GvTG~---~~~-~~~~~~~~i~~ik~~t~~---Pv~v  210 (269)
T PRK13118        149 -DFIRLTSPTTS--------DERLPRVLEHAS--GYLYYVSLAGVTGA---AAL-DTEHVEEAVARLRRHTDL---PVVV  210 (269)
T ss_pred             -CHHEEECCCCC--------HHHHHHHHHCCC--CCEEEEECCCCCCC---CCC-CHHHHHHHHHHHHHHCCC---CEEE
T ss_conf             -46403698987--------899999984378--83899854566787---766-719899999999962589---8178


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHH
Q ss_conf             862257776544302689999899769983999744054221255
Q gi|254780200|r  251 CFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLET  295 (343)
Q Consensus       251 ~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lET  295 (343)
                      +|    |=      ++.+..+.+.+. . .-+|+= |-+.+.+|.
T Consensus       211 GF----GI------s~~e~~~~v~~~-a-DGvIVG-Sa~Vk~i~~  242 (269)
T PRK13118        211 GF----GI------RDAESAAAIARL-A-DGVVVG-SALVDAIAE  242 (269)
T ss_pred             EE----CC------CCHHHHHHHHCC-C-CEEEEC-HHHHHHHHH
T ss_conf             71----67------999999999800-9-999985-899999985


No 103
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic; InterPro: IPR010109   Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA).    Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH .   This entry includes both mitochondrial and peroxisomal forms of citrate synthase. Peroxisomal forms of the enzyme, recognized by the C-terminal targeting motif SKL, act in the glyoxylate cycle. Eukaryotic homologs include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans (Emericella nidulans).; GO: 0004108 citrate (Si)-synthase activity, 0044262 cellular carbohydrate metabolic process.
Probab=41.63  E-value=27  Score=15.75  Aligned_cols=23  Identities=13%  Similarity=0.227  Sum_probs=16.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             874045777599999999865224784
Q gi|254780200|r   86 KNESILRTHTRDQATNLAKRLESISSI  112 (343)
Q Consensus        86 gg~SPL~~~t~~qa~~L~~~L~~~~~~  112 (343)
                      -|.-|    |++|+++|.+++.++.++
T Consensus        96 TG~VP----se~Qv~alsaEw~aRadl  118 (430)
T TIGR01793        96 TGEVP----SEEQVDALSAEWRARADL  118 (430)
T ss_pred             CCCCC----HHHHHHHHHHHHHHHHHH
T ss_conf             58998----088999999999855002


No 104
>pfam08645 PNK3P Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.
Probab=41.60  E-value=27  Score=15.75  Aligned_cols=24  Identities=38%  Similarity=0.721  Sum_probs=18.4

Q ss_pred             HCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             1045424789999987099658996
Q gi|254780200|r  119 RYGKPSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       119 ry~~P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      .+..|.+.++|++|.++|+. ||++
T Consensus        28 ~~~~p~V~~~L~~L~~~gY~-iVIv   51 (158)
T pfam08645        28 KWLYPSVPEKLKKLHEDGYK-IVIF   51 (158)
T ss_pred             EECCCCHHHHHHHHHHCCCE-EEEE
T ss_conf             88077889999999988987-9999


No 105
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=41.32  E-value=27  Score=15.72  Aligned_cols=48  Identities=19%  Similarity=0.311  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             0454247899999870996589963171110014689999999999871799864213
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTV  177 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I  177 (343)
                      .+.|-|+-+++++++.|++++++..-|   -       -+.+.+.+.+..+..++.++
T Consensus        28 ~~kpii~~~i~~l~~~gi~~iii~~~y---~-------~~~i~~~~~~~~~~~~i~~~   75 (221)
T cd06422          28 AGKPLIDHALDRLAAAGIRRIVVNTHH---L-------ADQIEAHLGDSRFGLRITIS   75 (221)
T ss_pred             CCEEHHHHHHHHHHHCCCCEEEEECCC---C-------HHHHHHHHHCCCCCCCEEEE
T ss_conf             998999999999998299679983253---2-------78899987225578737997


No 106
>pfam02543 CmcH_NodU Carbamoyltransferase. This family consists of NodU from Rhizobium and CmcH from Nocardia lactamdurans. NodU a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. CmcH is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity, EC:2.1.3.7 catalysing the reaction: Carbamoyl phosphate + 3-hydroxymethylceph-3-EM-4-carboxylate <= phosphate + 3-carbamoyloxymethylcephem.
Probab=40.94  E-value=18  Score=16.93  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=13.6

Q ss_pred             HHHHHHHHHCCCCCCCEEEEECC--CCC
Q ss_conf             99999997266756704786225--777
Q gi|254780200|r  233 TARLLKEFLSWPDDRFKICFQSR--FGR  258 (343)
Q Consensus       233 t~~~i~~~l~~~~~~~~l~fQSr--~Gp  258 (343)
                      ..+.+++.|.  ++++-=-||.|  +||
T Consensus       253 ~~~~vA~~L~--~gkIVg~fqGr~E~GP  278 (360)
T pfam02543       253 IPSEAAELLA--DGKVVGWFQGRMEFGP  278 (360)
T ss_pred             HHHHHHHHHH--CCCEEEEEECCCCCCC
T ss_conf             7999999986--7998999947866787


No 107
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=40.78  E-value=28  Score=15.67  Aligned_cols=41  Identities=29%  Similarity=0.417  Sum_probs=22.7

Q ss_pred             CCCCCC-CCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHH
Q ss_conf             257776-5443026899998997699839997440542212558
Q gi|254780200|r  254 SRFGRI-KCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETS  296 (343)
Q Consensus       254 Sr~Gp~-~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl  296 (343)
                      |.||.. --=.|-..++.+++.+ .+-.| |+.|+|.-|.||.|
T Consensus       302 SAFGGIva~N~~vd~~~A~~i~~-~F~Ev-IiAP~f~~eAL~iL  343 (514)
T PRK00881        302 SAFGGIIAFNREVDAETAEAIVK-IFLEV-IIAPSFDEEALEIL  343 (514)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHH-HHHHH-HCCCCCCHHHHHHH
T ss_conf             54574799626268999999999-88874-11788998999998


No 108
>cd01310 TatD_DNAse TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=40.22  E-value=28  Score=15.61  Aligned_cols=137  Identities=11%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             45424789999987099658996317111001468999999999987179986421334557800689999999999973
Q gi|254780200|r  121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFES  200 (343)
Q Consensus       121 ~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~  200 (343)
                      ....++++++.+++.|+..++....-        -...+.+.+-.++..   .  +...+.-||.+++-+.+...+.++.
T Consensus        13 ~~~d~~~vi~~a~~~gv~~ii~~~~~--------~~~~~~~~~la~~~~---~--i~~~~GiHP~~~~~~~~~~~~~l~~   79 (251)
T cd01310          13 FDADRDDVLARAREAGVIKIIVVGTD--------LKSSKRALELAKKYD---N--VYAAVGLHPHDADEHVDEDLDLLEL   79 (251)
T ss_pred             HCCCHHHHHHHHHHCCCCEEEEECCC--------HHHHHHHHHHHHHCC---C--EEEEECCCHHHHHHCCHHHHHHHHH
T ss_conf             44699999999998699889996899--------999999999997599---8--6898236837651235779999999


Q ss_pred             CCCCCCEEEEEECCCCHHHHHHCCCCHHH--HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC-
Q ss_conf             38998669998336750267627998889--999999999972667567047862257776544302689999899769-
Q gi|254780200|r  201 IQWTPEMLLVSFHQMPVSYLLKGDPYGCH--CHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDG-  277 (343)
Q Consensus       201 ~~~~~~~llfSaHglP~~~~~~gDpY~~q--~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G-  277 (343)
                      ....+..+-.-==||.-..  ..++...|  +.+.-=.+++.++.|     +.-.||-        ..+++++-|.+.+ 
T Consensus        80 ~~~~~~~vaIGEiGLD~~~--~~~~~~~Q~~~F~~ql~lA~~~~lP-----v~iH~R~--------A~~~~l~iL~~~~~  144 (251)
T cd01310          80 LAANPKVVAIGEIGLDYYR--DKSPREVQKEVFRAQLELAKELNLP-----VVIHSRD--------AHEDVLEILKEYGP  144 (251)
T ss_pred             HHCCCCEEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCC-----EEEEECC--------CHHHHHHHHHHCCC
T ss_conf             9728990699850148888--8998999999999999999875788-----4898645--------47999999997088


Q ss_pred             CCCEEEEC
Q ss_conf             98399974
Q gi|254780200|r  278 IKSLAIIT  285 (343)
Q Consensus       278 ~k~v~v~p  285 (343)
                      ..++++-|
T Consensus       145 ~~~~v~H~  152 (251)
T cd01310         145 PKRGVFHC  152 (251)
T ss_pred             CCCEEEEE
T ss_conf             87738885


No 109
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377   Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=40.12  E-value=16  Score=17.29  Aligned_cols=202  Identities=15%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHCCCCCHH-HHHHHHHHCCCCEEEEE
Q ss_conf             2574788999998707788740457775999999998652247---8430011210454247-89999987099658996
Q gi|254780200|r   68 NFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESIS---SIVVDWAMRYGKPSVK-EIINNLREEGCDRLLIF  143 (343)
Q Consensus        68 ~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~~~~---~~~V~~amry~~P~i~-~~l~~l~~~g~~~ii~l  143 (343)
                      ..||-.+|.--++==| .-=|--+..+|...-..|++-++..-   .+.+.+++-=-.+-=| +++.-|-.+.+|-||-+
T Consensus        45 ~YRPNAVARGLASKrT-TTVGViIPDIsN~yya~LarGIeDIA~MYKYNIILsNSD~~~ekE~~v~NTLl~KQVDGiIfm  123 (332)
T TIGR01481        45 DYRPNAVARGLASKRT-TTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDEDEEKEVQVLNTLLSKQVDGIIFM  123 (332)
T ss_pred             CCCCCHHHHCCCCCCE-EEEEEEECCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC
T ss_conf             7985445322667740-234688158615768501676025751101233565268987521676665331010113444


Q ss_pred             ECCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCC--CCCCCC----CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             317111001468999-99999998717998642--133455----78006899999999999733899866999833675
Q gi|254780200|r  144 PLYPQYSAATTGTAQ-DKVFQELIHMRWSPSLR--TVPPYY----EDSDYISALAQSIREHFESIQWTPEMLLVSFHQMP  216 (343)
Q Consensus       144 PLyPqyS~sTtgS~~-~~~~~~l~~~~~~~~~~--~I~~~~----~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP  216 (343)
                                 |..+ |++.+.+.+-+ .|=+=  .++.=+    =+=.|.+|-.+-+.+.+++ +.  .++=|.-=+|-
T Consensus       124 -----------G~~Ite~~re~F~rs~-~PVVLAGt~D~~~~~pSVNIDy~~A~kEav~~l~~~-Gh--K~iAfv~G~L~  188 (332)
T TIGR01481       124 -----------GGEITEKLREEFSRSP-VPVVLAGTVDKENELPSVNIDYKQATKEAVKELIAK-GH--KKIAFVSGSLS  188 (332)
T ss_pred             -----------CHHHHHHHHHHHHCCC-CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CC--CEEEEEECCCC
T ss_conf             -----------3021089999971289-988995354865467731016789999999998633-58--26888736757


Q ss_pred             HHHHHHCCC---CHHHHHHHHHHHHHHHCCCCCCCEEEEE----CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH
Q ss_conf             026762799---8889999999999972667567047862----257776544302689999899769983999744054
Q gi|254780200|r  217 VSYLLKGDP---YGCHCHKTARLLKEFLSWPDDRFKICFQ----SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFS  289 (343)
Q Consensus       217 ~~~~~~gDp---Y~~q~~~t~~~i~~~l~~~~~~~~l~fQ----Sr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFv  289 (343)
                      ++ +..-++   |+.-+        +..|+..++ .+.|.    -+-|-         ...++|.+.+-+-=+|++    
T Consensus       189 ~~-~N~~~~l~GykE~L--------~~~gI~~~e-~L~~~~~YsY~~G~---------K~~~~l~~s~p~~tAv~v----  245 (332)
T TIGR01481       189 DS-VNGEVRLEGYKEAL--------KKAGIAYEE-DLVIEAKYSYDAGV---------KLAAELLESSPKITAVVV----  245 (332)
T ss_pred             CC-CCCEECCCHHHHHH--------HHCCCCCCC-CEEEECCCCCHHHH---------HHHHHHHHCCCCCCEEEE----
T ss_conf             11-04520133046788--------736874142-21330455504469---------999999853899658998----


Q ss_pred             HCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             221255888758999999975997
Q gi|254780200|r  290 SDCLETSYEIAHEAKEIFVNGGGE  313 (343)
Q Consensus       290 sD~lETl~Eidie~~e~~~e~Gg~  313 (343)
                           +-.|+.+..-.-+.++|+.
T Consensus       246 -----~~DE~A~G~lnaa~D~Gi~  264 (332)
T TIGR01481       246 -----ADDELAIGILNAALDAGIK  264 (332)
T ss_pred             -----CCHHHHHHHHHHHHHCCCC
T ss_conf             -----1828899999999857898


No 110
>pfam02401 LYTB LytB protein. The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Probab=39.05  E-value=29  Score=15.49  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=14.1

Q ss_pred             HHHHHHHHCCCCCEEEECCHHHHCCHHHHHHH
Q ss_conf             99998997699839997440542212558887
Q gi|254780200|r  268 KTVEKLAHDGIKSLAIITPGFSSDCLETSYEI  299 (343)
Q Consensus       268 ~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Ei  299 (343)
                      +.+.+|+++  -.+.++--|+-|-|---|+|+
T Consensus       200 ~a~~~lA~~--vD~miVVGg~nSsNT~~L~ei  229 (280)
T pfam02401       200 EAVRELAPE--VDVVLVVGGKNSSNSNRLAEI  229 (280)
T ss_pred             HHHHHHHHH--CCEEEEECCCCCCCHHHHHHH
T ss_conf             999977754--989999579999548999999


No 111
>PRK07105 pyridoxamine kinase; Validated
Probab=39.04  E-value=29  Score=15.49  Aligned_cols=192  Identities=13%  Similarity=0.210  Sum_probs=94.2

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEE-ECCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHH
Q ss_conf             045424789999987099658996-3171110-------01468999999999987179986421-33455780068999
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIF-PLYPQYS-------AATTGTAQDKVFQELIHMRWSPSLRT-VPPYYEDSDYISAL  190 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~l-PLyPqyS-------~sTtgS~~~~~~~~l~~~~~~~~~~~-I~~~~~~p~yI~a~  190 (343)
                      ||.=.+.-.+.-|.+.|++-..+. -+.-|.+       .-.....++.+.+...+.+  .++.- ...|-.++.-|+.+
T Consensus        16 ~G~agl~A~i~~lsa~G~~~~~vpTallS~~T~g~~~~~~~~l~~~l~~~~~~w~~~~--i~~dai~tG~Lgs~~~i~~v   93 (284)
T PRK07105         16 FGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQNPSILDLTDGMQAFLTHWKSLN--LKFDAIYSGYLGSPRQVQIV   93 (284)
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHCC--CCCCEEEECCCCCHHHHHHH
T ss_conf             4677999999999986995406568994568998464500172899999999998669--98798998987999999999


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHH----CCCCCCCEEEEECCCCCCCCC----
Q ss_conf             999999997338998669998336750267627998889999999999972----667567047862257776544----
Q gi|254780200|r  191 AQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFL----SWPDDRFKICFQSRFGRIKCL----  262 (343)
Q Consensus       191 ~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l----~~~~~~~~l~fQSr~Gp~~WL----  262 (343)
                      ++.|+.. ..   +...++.-    |+ +.++|.-|...-.+.++.+.+.+    -+.+|..+.++-+  | .++.    
T Consensus        94 ~~~l~~~-~~---~~~~iVvD----PV-Mgd~G~ly~~~~~~~v~~~r~Llp~AdiITPN~~Ea~~Lt--g-~~~~~~~~  161 (284)
T PRK07105         94 SEFIDDF-KK---KDLLVVVD----PV-MGDNGKLYQGFDQKMVEEMRKLIQKADVITPNLTEACLLL--D-KPYLEKSY  161 (284)
T ss_pred             HHHHHHH-CC---CCCCEEEC----CC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH--C-CCCCCCCC
T ss_conf             9999985-57---89848969----65-5768876677879999999998440746279999999996--8-87687779


Q ss_pred             -CHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEE-----EECC--CCCCHHHHHHHHHH
Q ss_conf             -302689999899769983999744054221255888758999999975997589-----8168--98798999999999
Q gi|254780200|r  263 -EPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFT-----QVPC--LNSSNLSIDLLEKI  334 (343)
Q Consensus       263 -~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~-----rvp~--lN~~~~fi~~La~l  334 (343)
                       .-+..+.+++|.+.|.++|+|--..+-.|++..++-          ...+..+.     |+|.  -++-+.|.++|+.-
T Consensus       162 ~~~~~~~~a~~L~~~G~~~Vvitg~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~~~GTGd~fss~iaa~  231 (284)
T PRK07105        162 DEEEIKDYLRKLADLGPKIVIITSVPFEEGKIGVAYY----------DRASDRFWKHFGKYIPAHYPGTGDIFTSVITGS  231 (284)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEE----------CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9999999999999708988999045477871679998----------589988999626541899898417899999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780200|r  335 T  335 (343)
Q Consensus       335 v  335 (343)
                      .
T Consensus       232 l  232 (284)
T PRK07105        232 L  232 (284)
T ss_pred             H
T ss_conf             9


No 112
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=38.14  E-value=30  Score=15.39  Aligned_cols=53  Identities=13%  Similarity=0.217  Sum_probs=34.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC---CCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7404577759999999986522478430011210---454247899999870996589963
Q gi|254780200|r   87 NESILRTHTRDQATNLAKRLESISSIVVDWAMRY---GKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus        87 g~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry---~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      ||| -...|...+..+++..    ++++-.-+.+   ..--+.+.+.++++.|+++|++|-
T Consensus        63 ggs-tr~~T~~i~~~i~~~~----~i~~~~HLTCvg~t~~~i~~~L~~~~~~GI~nILALR  118 (296)
T PRK09432         63 NSG-ERDRTHSIIKGIKKRT----GLEAAPHLTCIDATPEELRTIAKDYWNNGIRHIVALR  118 (296)
T ss_pred             CCC-CHHHHHHHHHHHHHHH----CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             997-7356999999999874----9981126662699999999999999975975486548


No 113
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316   These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=38.09  E-value=30  Score=15.39  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH----CCCCCHHHHHHHH---HHCCCCEEEEE
Q ss_conf             4788999998707788740457775999999998652247843001121----0454247899999---87099658996
Q gi|254780200|r   71 PSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMR----YGKPSVKEIINNL---REEGCDRLLIF  143 (343)
Q Consensus        71 ~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amr----y~~P~i~~~l~~l---~~~g~~~ii~l  143 (343)
                      |.++.+.|..|    |-..||.+-     +.|++.|+..+.+.+|+=+=    -|.=-|..+|.|.   +.+|+++|+==
T Consensus        56 P~Evl~~Y~~~----GRPTPL~RA-----~~LEe~Lgt~gr~rIyyK~E~~~~tGSHK~NTA~AqAYYak~~G~k~l~TE  126 (426)
T TIGR01415        56 PEEVLKAYAKI----GRPTPLIRA-----KGLEELLGTPGRARIYYKYESVSPTGSHKINTAIAQAYYAKKEGAKRLVTE  126 (426)
T ss_pred             CHHHHHHHHHH----CCCCHHHHH-----HHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             87899999750----788634665-----444786289952789874057577888524479999998755484374323


Q ss_pred             ECCHHH-HHHHHHH--------------HH--HHHHHHHHHHC-----CCCC------CCCCCCC-CCCCHHHH-HHHHH
Q ss_conf             317111-0014689--------------99--99999998717-----9986------4213345-57800689-99999
Q gi|254780200|r  144 PLYPQY-SAATTGT--------------AQ--DKVFQELIHMR-----WSPS------LRTVPPY-YEDSDYIS-ALAQS  193 (343)
Q Consensus       144 PLyPqy-S~sTtgS--------------~~--~~~~~~l~~~~-----~~~~------~~~I~~~-~~~p~yI~-a~~~~  193 (343)
                      -=.=|. |+.+.++              ++  +-+.|.+.+.-     .+|+      =++.+.. -+||+=+- |+++-
T Consensus       127 TGAGQWG~AlS~A~al~~L~~~VfMvr~Sf~~KP~Rk~lM~~yGa~V~PSPS~~T~~GR~~L~e~gP~~PGSLGiAISEA  206 (426)
T TIGR01415       127 TGAGQWGSALSLAGALFGLKVKVFMVRVSFQQKPYRKYLMELYGAEVIPSPSELTEFGRKVLKEDGPDHPGSLGIAISEA  206 (426)
T ss_pred             CCCCHHHHHHHHHHHHHCCEEEEEEEECCHHCCHHHHHHHHHCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             68864789999999872892589887412104846899998708843368877513468887406777786167899999


Q ss_pred             HHHHHHHCC
Q ss_conf             999997338
Q gi|254780200|r  194 IREHFESIQ  202 (343)
Q Consensus       194 I~~~l~~~~  202 (343)
                      |..++++.+
T Consensus       207 ~e~al~~~~  215 (426)
T TIGR01415       207 IEEALSDED  215 (426)
T ss_pred             HHHHHHCCC
T ss_conf             999970899


No 114
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=37.65  E-value=31  Score=15.34  Aligned_cols=200  Identities=18%  Similarity=0.108  Sum_probs=113.4

Q ss_pred             CCCCHHHHHHHHHHCCCCEE----EEEECCHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHH
Q ss_conf             45424789999987099658----996317111001468----999999999987179986421-334557800689999
Q gi|254780200|r  121 GKPSVKEIINNLREEGCDRL----LIFPLYPQYSAATTG----TAQDKVFQELIHMRWSPSLRT-VPPYYEDSDYISALA  191 (343)
Q Consensus       121 ~~P~i~~~l~~l~~~g~~~i----i~lPLyPqyS~sTtg----S~~~~~~~~l~~~~~~~~~~~-I~~~~~~p~yI~a~~  191 (343)
                      |+=.-.-++--|+.-|.+-.    ++||=.|+|-..|..    +.++.+.+.+....+..+++- ...|.-++.=+++++
T Consensus        13 G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~   92 (281)
T COG2240          13 GSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIA   92 (281)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf             02330777879998598235435388248888897788579889999999999854413446889970479889999999


Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHH-HHHHHH--HHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf             9999999733899866999833675026762799888-999999--9999972667567047862257776544302689
Q gi|254780200|r  192 QSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGC-HCHKTA--RLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDK  268 (343)
Q Consensus       192 ~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~-q~~~t~--~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~  268 (343)
                      +-+++.=+.  ++ ..+++-=   |+ +-+.|-.|.. .+.+..  +++-..-.+.+|.|++.+-|  |..-=..=+..+
T Consensus        93 ~~v~~vk~~--~P-~~~~l~D---PV-MGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Lt--g~~~~~~~da~~  163 (281)
T COG2240          93 GIVKAVKEA--NP-NALYLCD---PV-MGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILT--GKPLNTLDDAVK  163 (281)
T ss_pred             HHHHHHHCC--CC-CEEEEEC---CC-CCCCCCEEECCCHHHHHHHHHCCHHHEECCCHHHHHHHH--CCCCCCHHHHHH
T ss_conf             999998624--98-7389967---74-367996352643189999864213007488799999984--988788899999


Q ss_pred             HHHHHHHCCCCCEEEECC---HHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             999899769983999744---0542212558887589999999759975898168987989999999999
Q gi|254780200|r  269 TVEKLAHDGIKSLAIITP---GFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKIT  335 (343)
Q Consensus       269 ~l~~L~~~G~k~v~v~p~---gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv  335 (343)
                      ....|.+.|.+.|+|-..   ++-.++.+.+..-. +..+.   .. ..+... --++-|.|...+..-+
T Consensus       164 aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~-~~~~h---~~-~~v~~~-~~GtGDL~sallla~l  227 (281)
T COG2240         164 AARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSA-ELAWH---IS-PLVPFI-PNGTGDLFSALLLARL  227 (281)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCH-HHHHH---HH-HCCCCC-CCCCHHHHHHHHHHHH
T ss_conf             99997514898899953453678773499961312-23323---43-227889-9982499999999999


No 115
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG; InterPro: IPR014135   This entry contains the Agrobacterium tumefaciens Ti-plasmid TraG, it is responsible for conjugative transfer of the entire plasmid among Agrobacterium strains . The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems..
Probab=37.20  E-value=31  Score=15.30  Aligned_cols=133  Identities=20%  Similarity=0.287  Sum_probs=64.5

Q ss_pred             HCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHCC------CCCHH---HHHHHH
Q ss_conf             12574788999998707788740457775999999998652-----24784300112104------54247---899999
Q gi|254780200|r   67 LNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLE-----SISSIVVDWAMRYG------KPSVK---EIINNL  132 (343)
Q Consensus        67 ~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~-----~~~~~~V~~amry~------~P~i~---~~l~~l  132 (343)
                      +||+|.     =+.=|+ .||+|||+.+....--.=.--+.     +.+...|=-|.||+      .||.|   -+.++=
T Consensus       193 ~PF~p~-----d~~tWG-~GGkaPLLtf~~dFgStHmifFAGSGGfKTTS~vvPTaL~y~Gplv~LDPStEvAPMV~~hR  266 (641)
T TIGR02767       193 LPFRPD-----DRATWG-KGGKAPLLTFDLDFGSTHMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVVEHR  266 (641)
T ss_pred             CCCCCC-----CCCCCC-CCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf             889852-----786567-78885100103688850014870787811046423654027878798688766440068998


Q ss_pred             HHCCCCEEEEEECCHHHHHHH-HHHHHHHHHHH----HHHHCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             870996589963171110014-68999999999----987179986------4213345578006899999999999733
Q gi|254780200|r  133 REEGCDRLLIFPLYPQYSAAT-TGTAQDKVFQE----LIHMRWSPS------LRTVPPYYEDSDYISALAQSIREHFESI  201 (343)
Q Consensus       133 ~~~g~~~ii~lPLyPqyS~sT-tgS~~~~~~~~----l~~~~~~~~------~~~I~~~~~~p~yI~a~~~~I~~~l~~~  201 (343)
                      ++.|-+++|||  =|- +..+ -=.++|.+.+.    .+|......      ...++.=.....|-++-|.++-.+|=. 
T Consensus       267 r~~g~R~ViVL--DP~-~~~~kgFNvLDwi~~~~vPr~~kEedIVg~a~~lltd~~r~ess~~~yF~~~A~~LLTaLlA-  342 (641)
T TIGR02767       267 RKAGDRKVIVL--DPA-AGVVKGFNVLDWIERDGVPRLKKEEDIVGVAKLLLTDKVRTESSRDDYFRAQAHNLLTALLA-  342 (641)
T ss_pred             HHHCCCEEEEE--CCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-
T ss_conf             74149648997--688-88746640001412378865541467999998885277554565311578889999998876-


Q ss_pred             CCCCCEEEEEECC
Q ss_conf             8998669998336
Q gi|254780200|r  202 QWTPEMLLVSFHQ  214 (343)
Q Consensus       202 ~~~~~~llfSaHg  214 (343)
                           |++||-|-
T Consensus       343 -----hV~lS~ey  350 (641)
T TIGR02767       343 -----HVILSDEY  350 (641)
T ss_pred             -----HHHCCCCC
T ss_conf             -----54227764


No 116
>TIGR00962 atpA ATP synthase F1, alpha subunit; InterPro: IPR005294   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient.   This entry represents the alpha subunit found in the F1 complex of F-ATPases. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha-subunit contains a highly conserved adenine-specific non-catalytic nucleotide-binding domain, with a conserved amino acid sequence of Gly-X-X-X-X-Gly-Lys. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit .   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=36.80  E-value=32  Score=15.25  Aligned_cols=91  Identities=21%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             HHHCCCCCHHHHHHH-HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCC---CCCCCCCCHH
Q ss_conf             121045424789999-98709965899631711100146899999999998717------9986421---3345578006
Q gi|254780200|r  117 AMRYGKPSVKEIINN-LREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR------WSPSLRT---VPPYYEDSDY  186 (343)
Q Consensus       117 amry~~P~i~~~l~~-l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~------~~~~~~~---I~~~~~~p~y  186 (343)
                      +|.|-.||..-++.+ +..+| .+++++              ||.+-|+...+|      ..|+=|-   =+-||-|..+
T Consensus       240 ~lqYLAPY~G~tmaEyF~d~G-khaLIi--------------YDDLSKqA~AYR~iSLLLRRPPGREAyPGDVFYLHSRL  304 (520)
T TIGR00962       240 SLQYLAPYTGCTMAEYFRDNG-KHALII--------------YDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRL  304 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC-CEEEEE--------------EECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             245420688999999998659-737999--------------74740789999999987188658716997401454568


Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEE-EEECCCCHHHHH--HCC
Q ss_conf             89999999999973389986699-983367502676--279
Q gi|254780200|r  187 ISALAQSIREHFESIQWTPEMLL-VSFHQMPVSYLL--KGD  224 (343)
Q Consensus       187 I~a~~~~I~~~l~~~~~~~~~ll-fSaHglP~~~~~--~gD  224 (343)
                      ++=-|+.=+++.+.+...+.+== =|-=.||.  ++  .||
T Consensus       305 LERAAKLsdeYve~FtkGevkGgtGSlTALPI--IETQAGD  343 (520)
T TIGR00962       305 LERAAKLSDEYVEKFTKGEVKGGTGSLTALPI--IETQAGD  343 (520)
T ss_pred             HHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCC--EEECCCC
T ss_conf             99986407888854305632466535236772--2521487


No 117
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128   The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=36.74  E-value=32  Score=15.25  Aligned_cols=131  Identities=17%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             99999998748954411786888998766651257478899999870778874045777599999999865224784300
Q gi|254780200|r   36 SLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVD  115 (343)
Q Consensus        36 ~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~~~~~~~V~  115 (343)
                      .=..|+...|.+|.+++.-.-+|+......+               |    ..-+....+-....=++++=++...-.+.
T Consensus        98 ~Y~~~~~~~L~~p~~~~~~~~~~~~~~~s~~---------------~----AL~~~~~~~~~~~~~f~k~G~~q~~d~~~  158 (613)
T TIGR02759        98 TYKTNQAQILKNPYVIEAYDQLWQALQLSLL---------------A----ALAISLVVFLLFMRFFKKRGEQQSKDQFI  158 (613)
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H----HHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf             2201055665413899999999999999999---------------9----99999999999999998603000020011


Q ss_pred             HHHHC-CCCC-HHHHHHHHHHC----C-----CC--EEEEEECCHHHHHH-------HHHH----HHHHHHHHHHHHC--
Q ss_conf             11210-4542-47899999870----9-----96--58996317111001-------4689----9999999998717--
Q gi|254780200|r  116 WAMRY-GKPS-VKEIINNLREE----G-----CD--RLLIFPLYPQYSAA-------TTGT----AQDKVFQELIHMR--  169 (343)
Q Consensus       116 ~amry-~~P~-i~~~l~~l~~~----g-----~~--~ii~lPLyPqyS~s-------TtgS----~~~~~~~~l~~~~--  169 (343)
                      -|.++ ..|. +...|++-.+.    |     +.  +|-.+||+|++|..       ||||    +++.+.+.+.+.+  
T Consensus       159 rG~~l~~~~~~~~~~lk~~~r~lkkqGvGnGk~Sdi~i~g~~l~K~~sE~Qh~L~~GTtG~GKs~~lr~LL~~iR~rGd~  238 (613)
T TIGR02759       159 RGSQLASSPKELAKKLKKSKRALKKQGVGNGKASDIKIGGLPLIKKGSEVQHILIHGTTGSGKSVALRKLLRWIRQRGDR  238 (613)
T ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             36423068799999999876546541677865463000780678777742252664541743899999999999863985


Q ss_pred             ---CCCCCCCCCCCCCCCH
Q ss_conf             ---9986421334557800
Q gi|254780200|r  170 ---WSPSLRTVPPYYEDSD  185 (343)
Q Consensus       170 ---~~~~~~~I~~~~~~p~  185 (343)
                         ++....+++.|||...
T Consensus       239 AIiYDkgC~f~~~fyd~~~  257 (613)
T TIGR02759       239 AIIYDKGCTFVSRFYDPSQ  257 (613)
T ss_pred             EEEEECCCCCCCCCCCCCC
T ss_conf             8998257420213268888


No 118
>pfam08029 HisG_C HisG, C-terminal domain.
Probab=36.66  E-value=32  Score=15.24  Aligned_cols=23  Identities=30%  Similarity=0.660  Sum_probs=16.1

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             42478999998709965899631
Q gi|254780200|r  123 PSVKEIINNLREEGCDRLLIFPL  145 (343)
Q Consensus       123 P~i~~~l~~l~~~g~~~ii~lPL  145 (343)
                      --+.+.+.+|++.|.+-|+++|+
T Consensus        48 ~~~~~~~~~Lk~~GA~~Ilv~pI   70 (73)
T pfam08029        48 KEVWEIMDELKALGASGILVLPI   70 (73)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             89999999999879977999662


No 119
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=36.28  E-value=32  Score=15.20  Aligned_cols=14  Identities=7%  Similarity=0.230  Sum_probs=9.0

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             79899999999999
Q gi|254780200|r  323 SSNLSIDLLEKITR  336 (343)
Q Consensus       323 ~~~~fi~~La~lv~  336 (343)
                      +++.|+++|..+.+
T Consensus       347 en~~ll~aL~~i~e  360 (362)
T PRK04781        347 QNDRVLAALQRTQE  360 (362)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999996


No 120
>TIGR02843 CyoB cytochrome o ubiquinol oxidase, subunit I; InterPro: IPR014207   This entry represents subunit 1 (CyoB) of the cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant..
Probab=36.13  E-value=24  Score=16.09  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHCCC----CCCE--EEEEECCC
Q ss_conf             0689999999999973389----9866--99983367
Q gi|254780200|r  185 DYISALAQSIREHFESIQW----TPEM--LLVSFHQM  215 (343)
Q Consensus       185 ~yI~a~~~~I~~~l~~~~~----~~~~--llfSaHgl  215 (343)
                      +|-||.--|.++++...+.    .++|  =||||||+
T Consensus        71 GFaDAimmR~qqala~g~~~GyL~p~HyDqiFtAHGV  107 (646)
T TIGR02843        71 GFADAIMMRTQQALASGESEGYLPPEHYDQIFTAHGV  107 (646)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             3688999999999963688997686421112212248


No 121
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=35.71  E-value=33  Score=15.14  Aligned_cols=182  Identities=13%  Similarity=0.124  Sum_probs=92.8

Q ss_pred             CCCEEEEEEC-CHHHHHH--HHHHHHHHHHHHHHHHCCCC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9965899631-7111001--46899999999998717998------6421334557800689999999999973389986
Q gi|254780200|r  136 GCDRLLIFPL-YPQYSAA--TTGTAQDKVFQELIHMRWSP------SLRTVPPYYEDSDYISALAQSIREHFESIQWTPE  206 (343)
Q Consensus       136 g~~~ii~lPL-yPqyS~s--TtgS~~~~~~~~l~~~~~~~------~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~  206 (343)
                      .+++.+++|. ++.|+.+  ....++..+.+.+++.....      +=-|.+++-+...-++.+.+.|..+    ..+. 
T Consensus       171 diQEfMIiP~ga~sf~eal~~~~ev~~~lk~~L~~k~g~~~t~vgDEGGfaP~~~~~eeaL~li~eAi~~a----G~~~-  245 (442)
T PTZ00081        171 PFQEFMIAPVGAPSFREALRMGAEVYHTLKSIIKKKYGQDATNVGDEGGFAPNIKSANEALDLLVEAIEKA----GHEG-  245 (442)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----CCCC-
T ss_conf             84269987899987899999999999999999987608886765777670799999799999999999970----7775-


Q ss_pred             EEEEEECCCCH--HHHHHCCC--C-------------HHHHHHHHHHHHHHH-------CCCCCCCE--EEEECCCCC--
Q ss_conf             69998336750--26762799--8-------------889999999999972-------66756704--786225777--
Q gi|254780200|r  207 MLLVSFHQMPV--SYLLKGDP--Y-------------GCHCHKTARLLKEFL-------SWPDDRFK--ICFQSRFGR--  258 (343)
Q Consensus       207 ~llfSaHglP~--~~~~~gDp--Y-------------~~q~~~t~~~i~~~l-------~~~~~~~~--l~fQSr~Gp--  258 (343)
                      .+-+   ||=.  +..-+++.  |             ..+..+....+.++.       ++.+++|.  -.+.+++|.  
T Consensus       246 ~i~i---alD~AAsefy~~~~~~Y~l~~k~~~~~~~s~~eli~~y~~l~~~YPI~sIEDpl~E~D~~gw~~lt~~lg~~~  322 (442)
T PTZ00081        246 KVAI---CMDVAASEFYDAEKKMYNLTFKCPEPTYKTGAELVETYEDWVAKYPIVSIEDPFDQDDWEEYAKITEALGGKV  322 (442)
T ss_pred             CCCE---ECCHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf             6542---0023567776368963775330577772599999999999983098789958988467999999999709988


Q ss_pred             ---CCCCCHHHHHHHHHHHHCCCCCEEEECC---HHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             ---6544302689999899769983999744---0542212558887589999999759975898168987989999999
Q gi|254780200|r  259 ---IKCLEPPTDKTVEKLAHDGIKSLAIITP---GFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLE  332 (343)
Q Consensus       259 ---~~WL~P~t~~~l~~L~~~G~k~v~v~p~---gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La  332 (343)
                         +-=|--.-.+.|++-.+++.-|-+++=|   |-++|-+|        +-+++.++|.....--.+=-+.+.||.-||
T Consensus       323 ~iVGDDL~vTn~~rl~~gi~~~~~naiLIK~NQiGTlset~e--------ai~~A~~~g~~~ivShRSGETeD~~iaDLA  394 (442)
T PTZ00081        323 QIVGDDLLVTNPKRIKTALEKKACNALLLKVNQIGSITEAIE--------ACKLCMKNGWGVMVSHRSGETEDTFIADLV  394 (442)
T ss_pred             EEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH--------HHHHHHHCCCEEEEECCCCCCCCCHHHHHH
T ss_conf             998976557689999999854877638983323220999999--------999999879879995798876630088877


Q ss_pred             H
Q ss_conf             9
Q gi|254780200|r  333 K  333 (343)
Q Consensus       333 ~  333 (343)
                      =
T Consensus       395 V  395 (442)
T PTZ00081        395 V  395 (442)
T ss_pred             H
T ss_conf             7


No 122
>pfam08981 consensus
Probab=35.67  E-value=33  Score=15.13  Aligned_cols=144  Identities=14%  Similarity=0.228  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf             4247899999870996589963171110014689999999999871799864213345--57800689999999999973
Q gi|254780200|r  123 PSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPY--YEDSDYISALAQSIREHFES  200 (343)
Q Consensus       123 P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~--~~~p~yI~a~~~~I~~~l~~  200 (343)
                      --++-+++..++.|+.+|++-        ||+|.+-..+.+.++..  ..++-.|.+-  +..|+..+ +.+.+++.|++
T Consensus        12 ~tl~~a~~ra~e~gI~~iVvA--------SssG~TA~k~~e~~~~~--~~~lvvVth~~GF~~pg~~e-~~~e~~~~L~~   80 (181)
T pfam08981        12 DTLELAAERAKELGIKHIVVA--------SSSGETALKAAEALEGT--NLNVVVVTHHAGFSEPGEQE-MDPEVRKELEE   80 (181)
T ss_pred             HHHHHHHHHHHHCCCCEEEEE--------ECCCHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCC-CCHHHHHHHHH
T ss_conf             999999999997699769998--------07877999999871358--95599994645778998563-89999999997


Q ss_pred             CCCCCCEEEEEECCC--CHHHHHH--CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC-----CCCCCCCCHHHHHHHH
Q ss_conf             389986699983367--5026762--799888999999999997266756704786225-----7776544302689999
Q gi|254780200|r  201 IQWTPEMLLVSFHQM--PVSYLLK--GDPYGCHCHKTARLLKEFLSWPDDRFKICFQSR-----FGRIKCLEPPTDKTVE  271 (343)
Q Consensus       201 ~~~~~~~llfSaHgl--P~~~~~~--gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr-----~Gp~~WL~P~t~~~l~  271 (343)
                      ..   ..++..-|-+  .+|-+.+  |--|+.++.+.+-+   .+|   .-..+|+--.     -|-.++=    ++++.
T Consensus        81 ~G---~~V~t~tH~lsg~eR~is~kfgG~~p~eiiA~tLR---~fg---qG~KV~vEi~lMAaDaGlIp~~----eeVIa  147 (181)
T pfam08981        81 RG---VKVLTGTHALSGLERAISNKFGGISPVEIIAETLR---MLG---QGVKVCVEIALMAADAGLIPVG----EEVIA  147 (181)
T ss_pred             CC---CEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHH---HHC---CCCEEEEEEEEEECCCCCCCCC----CEEEE
T ss_conf             79---88999503134423541100479798999999999---728---9747999998875067877889----83899


Q ss_pred             HHH--HCCCCCEEEECCHHHHC
Q ss_conf             899--76998399974405422
Q gi|254780200|r  272 KLA--HDGIKSLAIITPGFSSD  291 (343)
Q Consensus       272 ~L~--~~G~k~v~v~p~gFvsD  291 (343)
                       +.  ..|..-.+|+-|+-..+
T Consensus       148 -iGGT~~GaDTA~Vi~PAhs~~  168 (181)
T pfam08981       148 -IGGTGRGADTALVIRPAHSNN  168 (181)
T ss_pred             -ECCCCCCCCEEEEEEECCCCC
T ss_conf             -776667763699983455676


No 123
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=35.27  E-value=34  Score=15.09  Aligned_cols=143  Identities=16%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEC
Q ss_conf             1334557800689999999999973389986699983367502676279988899999999999726675-670478622
Q gi|254780200|r  176 TVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPD-DRFKICFQS  254 (343)
Q Consensus       176 ~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~-~~~~l~fQS  254 (343)
                      .=++.|-+|.....+++.|++.|.+.+-..          -..+-++..-|..++.+-.+.....+.-.+ .++.++...
T Consensus       131 ~dpH~Wldp~na~~~v~~I~~~L~~~dP~~----------~~~y~~N~~~y~~kL~~l~~~~~~~~~~~~~~r~~vt~h~  200 (303)
T COG0803         131 NDPHVWLDPKNAKIYAENIADALVELDPEN----------KETYEKNAEAYLKKLNKLDEEAKAKLSKIPAQRDVVTSHG  200 (303)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             999820489999999999999998869413----------8999999999999999999999999844764664998637


Q ss_pred             CCC---C-------CCC-------CCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCC----C
Q ss_conf             577---7-------654-------430268999989976998399974405422125588875899999997599----7
Q gi|254780200|r  255 RFG---R-------IKC-------LEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGG----E  313 (343)
Q Consensus       255 r~G---p-------~~W-------L~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg----~  313 (343)
                      .|+   .       .-|       -+|.....+.++.+++--.++++-..+..+-+|||          +.+.|.    .
T Consensus       201 af~Y~~~~~g~~~~~i~~~~~~~e~s~~~l~~l~~~ik~~~i~~If~e~~~~~~~~~~l----------a~e~g~~~~~~  270 (303)
T COG0803         201 AFGYLARDYGLKQVAIAGISPEAEPSPKDLAKLVDLIKKKNIKAIFVESNVSSKSAETL----------AKETGVKILGL  270 (303)
T ss_pred             CHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH----------HHHHCCCCCCC
T ss_conf             20654510598512203658556999999999999998569978998188882799999----------99859860210


Q ss_pred             EEEEECCCCCCH--HHHHHHHHHHHHH
Q ss_conf             589816898798--9999999999998
Q gi|254780200|r  314 KFTQVPCLNSSN--LSIDLLEKITRRE  338 (343)
Q Consensus       314 ~~~rvp~lN~~~--~fi~~La~lv~~~  338 (343)
                      .+.-.-+.++.+  .+++++.+.+..-
T Consensus       271 ~~~d~~~~~~~~~~~y~~~~~~n~~~i  297 (303)
T COG0803         271 LYLDSLGDKDSKGDTYISMMKANLDTI  297 (303)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             022344567876452899999999999


No 124
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=35.25  E-value=31  Score=15.34  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=23.5

Q ss_pred             CCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             839997440542212558887589999999759975898168987
Q gi|254780200|r  279 KSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNS  323 (343)
Q Consensus       279 k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~  323 (343)
                      ..+-|+.+||=+|+-+.      ..+++|...|| +|.+|+..++
T Consensus       128 ~~i~i~tiGiG~~~~~~------~L~~iA~~~~G-~~~~v~~~~~  165 (170)
T cd01465         128 SGITLSTLGFGDNYNED------LMEAIADAGNG-NTAYIDNLAE  165 (170)
T ss_pred             CCCCCEEEEECCCCCHH------HHHHHHHCCCC-EEEECCCHHH
T ss_conf             38862489808879999------99999975798-8998499999


No 125
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=34.51  E-value=24  Score=16.08  Aligned_cols=36  Identities=6%  Similarity=0.185  Sum_probs=21.5

Q ss_pred             HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99998709965899631711100146899999999998717
Q gi|254780200|r  129 INNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR  169 (343)
Q Consensus       129 l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~  169 (343)
                      +.++....+++++.+     .+-.+..+-++++.+.+.+..
T Consensus        90 Lp~iLP~~vd~vi~l-----DtDi~F~~~I~eLW~~F~~f~  125 (280)
T cd06431          90 LTEALPSDLEKVIVL-----DTDITFATDIAELWKIFHKFT  125 (280)
T ss_pred             HHHHCCCCCCEEEEE-----ECCEEECCCHHHHHHHHHHCC
T ss_conf             766522224627999-----525000578999999987459


No 126
>KOG0467 consensus
Probab=34.42  E-value=35  Score=15.00  Aligned_cols=49  Identities=18%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             98889999999999972667567047862257776544302689999899769
Q gi|254780200|r  225 PYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDG  277 (343)
Q Consensus       225 pY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G  277 (343)
                      .|..-|+..++..++.++..+.--..   +-.| .-|+-|+|+..++.-.-+|
T Consensus       202 ~~~f~~~~fak~~~~kl~~k~~al~k---~lwg-d~y~~~ktk~I~~~~~~~g  250 (887)
T KOG0467         202 GWGFGIEQFAKFYAKKLGLKDAALLK---FLWG-DRYIDPKTKRICEGKKLKG  250 (887)
T ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHH---HHCC-CEEECCHHHHHHCCCCCCC
T ss_conf             56201999999998744734665213---2104-5243320466643567666


No 127
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=33.78  E-value=33  Score=15.09  Aligned_cols=187  Identities=18%  Similarity=0.250  Sum_probs=96.3

Q ss_pred             CCC-CCCCCCHHHHHHHHHHHCCCH-HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             178-889999889999999874895-441178688899876665125747889999987077887404577759999999
Q gi|254780200|r   25 NLG-TPDGHDFFSLRRYLREFLLDK-RVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNL  102 (343)
Q Consensus        25 n~G-~P~~~~~~~V~~yL~~fl~D~-~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L  102 (343)
                      ..| +|++    ||.|-+..++..+ .+....      .|.++    -...+ ..|.    ...|.-+|           
T Consensus         6 TIGQsPR~----DV~pei~~~l~~~v~i~e~G------aLDgl----s~~eI-~~~a----P~~ge~~L-----------   55 (221)
T pfam07302         6 TIGQSPRT----DVLPEITEHLGEPIEITEIG------ALDGL----SREEI-AALA----PGPGEDVL-----------   55 (221)
T ss_pred             EECCCCCH----HHHHHHHHHHCCCCCEEEEC------CCCCC----CHHHH-HHHC----CCCCCCEE-----------
T ss_conf             83579851----42699998708997289843------55799----99999-9719----99998441-----------


Q ss_pred             HHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             98652247843001121045424789999987099658996317111001468999999999987179986421334557
Q gi|254780200|r  103 AKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYE  182 (343)
Q Consensus       103 ~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~  182 (343)
                      -.+|..  +-.|.++-++-.|.+.+.+++|.++|++-|+++.         ||.     +..+...+     ..|.    
T Consensus        56 vTRL~D--G~~v~~s~~~v~~~lq~~i~~Le~~G~d~ilLlC---------TG~-----F~~l~~~~-----~ll~----  110 (221)
T pfam07302        56 VTRLRD--GQQVTVSKQKIERRLQQVIEKLDKEGVDVILLLC---------TGE-----FPKLSARN-----LLLE----  110 (221)
T ss_pred             EEEECC--CCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEE---------CCC-----CCCCCCCC-----CEEE----
T ss_conf             687069--9878988899889899999999867998999961---------477-----89865677-----2441----


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC--CC
Q ss_conf             8006899999999999733899866999833675026762799888999999999997266756704786225777--65
Q gi|254780200|r  183 DSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGR--IK  260 (343)
Q Consensus       183 ~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp--~~  260 (343)
                       |.-|  +...++.-..   +...- +|+             |-..|+..+.+.-.. ++     ..+.|-.. -|  +.
T Consensus       111 -P~ri--l~~lV~a~~~---~~~lG-Vvv-------------P~~eQ~~~~~~kW~~-~~-----~~~~~~~a-sPy~~~  163 (221)
T pfam07302       111 -PQRI--LPPLVASIVD---GHQLG-VIV-------------PLPEQISQQANKWQK-LV-----KEVVVVAA-SPYHGS  163 (221)
T ss_pred             -HHHH--HHHHHHHHCC---CCEEE-EEE-------------CCHHHHHHHHHHHHH-CC-----CCCEEEEE-CCCCCC
T ss_conf             -1886--7899998678---98599-995-------------579999999998874-58-----87179971-898898


Q ss_pred             CCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHH
Q ss_conf             44302689999899769983999744054221255
Q gi|254780200|r  261 CLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLET  295 (343)
Q Consensus       261 WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lET  295 (343)
                      |  ..+.++.++|.++|..=|+.=|+||...|=..
T Consensus       164 ~--~~l~~Aa~~L~~~gadlivLDCiGYt~~~r~~  196 (221)
T pfam07302       164 E--DRLEEAARELLDQGADLIVLDCIGYTQAMKDM  196 (221)
T ss_pred             H--HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             8--99999999999759899999887774999999


No 128
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=33.52  E-value=36  Score=14.90  Aligned_cols=122  Identities=21%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHH--HHHHHHH-HCCCCEEEEEECCHHHHHHHHHH----HHHH
Q ss_conf             404577759999999986522478430011210454247--8999998-70996589963171110014689----9999
Q gi|254780200|r   88 ESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVK--EIINNLR-EEGCDRLLIFPLYPQYSAATTGT----AQDK  160 (343)
Q Consensus        88 ~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~--~~l~~l~-~~g~~~ii~lPLyPqyS~sTtgS----~~~~  160 (343)
                      .+||...-.+||+.+.+.|....   +....-|+.|...  ++.+.+. ..|.. +...+.   ......|+    ..++
T Consensus        26 d~pLt~~G~~QA~~l~~~l~~~~---~~~~~i~sS~l~Ra~~TA~~~a~~~~~~-~~~~~~---l~E~~~G~~eg~~~~e   98 (208)
T COG0406          26 DSPLTEEGRAQAEALAERLAARD---IGFDAIYSSPLKRAQQTAEPLAEELGLP-LEVDDR---LREIDFGDWEGLTIDE   98 (208)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCC---CCCCEEEECCHHHHHHHHHHHHHHCCCC-CEECCC---CCCCCCCCCCCCCHHH
T ss_conf             99968779999999999986467---8977688275441999999999872997-324533---2436764357988899


Q ss_pred             HHHH----HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCCHHHH
Q ss_conf             9999----987179986421334557800689999999999973389--98669998336750267
Q gi|254780200|r  161 VFQE----LIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQW--TPEMLLVSFHQMPVSYL  220 (343)
Q Consensus       161 ~~~~----l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~--~~~~llfSaHglP~~~~  220 (343)
                      +.+.    ...+...+.....+.   -+.+.+ +.+++...+++...  .+..+++..||...+.+
T Consensus        99 ~~~~~p~~~~~~~~~~~~~~~~~---gEs~~~-~~~R~~~~i~~~~~~~~~~~vlvVsHg~~ir~l  160 (208)
T COG0406          99 LAEEPPEELAAWLADPYLAPPPG---GESLAD-VSKRVVAALAELLRSPPGNNVLVVSHGGVIRAL  160 (208)
T ss_pred             HHHCCHHHHHHHCCCCCCCCCCC---CCCHHH-HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
T ss_conf             98607788862124842258998---844999-999999999999985589859999894999999


No 129
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=33.07  E-value=36  Score=14.85  Aligned_cols=96  Identities=21%  Similarity=0.392  Sum_probs=54.4

Q ss_pred             CCCCCCCHHHHHH-----HHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             8889999889999-----99987489544117868889987666512574788999998707788740457775999999
Q gi|254780200|r   27 GTPDGHDFFSLRR-----YLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATN  101 (343)
Q Consensus        27 G~P~~~~~~~V~~-----yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~  101 (343)
                      |.|-+|+  ++.+     -+.+=++..|-|++|.                 .+.+.| +||    -.|||..     |+.
T Consensus        27 ~~p~~~~--~l~~~fp~~li~qe~~~er~i~iPe-----------------~v~~~y-~~g----RPTPL~~-----A~~   77 (419)
T PRK12391         27 GEPVGPE--DLAPIFPMELIEQEVSTERWIDIPE-----------------EVREIY-RLW----RPTPLIR-----ARR   77 (419)
T ss_pred             CCCCCHH--HHHHHCHHHHHHHHHCCCCCCCCCH-----------------HHHHHH-HCC----CCCHHHH-----HHH
T ss_conf             8959978--9645361999975505566656978-----------------999998-637----9966688-----888


Q ss_pred             HHHHHHCCCCCCCHH----HHHCCCCCHHHHHHHH---HHCCCCEEEEEECCHHHHHHH
Q ss_conf             998652247843001----1210454247899999---870996589963171110014
Q gi|254780200|r  102 LAKRLESISSIVVDW----AMRYGKPSVKEIINNL---REEGCDRLLIFPLYPQYSAAT  153 (343)
Q Consensus       102 L~~~L~~~~~~~V~~----amry~~P~i~~~l~~l---~~~g~~~ii~lPLyPqyS~sT  153 (343)
                      |.+.|+.  ...+++    -.--|.=-|..++.|.   ++.|.++|+.=.=.=|.-.+|
T Consensus        78 L~k~lgt--~AkIYlKrEdl~htGsHKiNnai~QallaK~mGkkriiaETGAGQhG~A~  134 (419)
T PRK12391         78 LEKALGT--PAKIYYKYEGVSPAGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSAL  134 (419)
T ss_pred             HHHHHCC--CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf             9997599--96799975677877776412199999999981995798635753677999


No 130
>PRK10481 hypothetical protein; Provisional
Probab=32.81  E-value=36  Score=14.85  Aligned_cols=193  Identities=17%  Similarity=0.213  Sum_probs=95.8

Q ss_pred             CCEEEEEECCC-CCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             86799997178-88999988999999987489544117868889987666512574788999998707788740457775
Q gi|254780200|r   17 GKIGVLLVNLG-TPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHT   95 (343)
Q Consensus        17 ~K~gvLL~n~G-~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t   95 (343)
                      .|.|+  +..| +|++    ||-|-+..++.+-.+....      .|.++    -...+ +.|.    ...|.-+|.   
T Consensus         3 ~~ig~--vTIGQsPR~----DV~pel~~~l~~~~i~e~G------aLDgl----s~~eI-~~~a----P~~ge~~Lv---   58 (224)
T PRK10481          3 ASLAI--LTIGQSPRT----DVLPLLTEYLDEIEITHHG------LLDGL----SREEI-AAYA----PEDGEDTLV---   58 (224)
T ss_pred             CEEEE--EEECCCCCH----HHHHHHHHHCCCCCEEEEC------CCCCC----CHHHH-HHCC----CCCCCCEEE---
T ss_conf             16999--995479850----4169999655877578732------45789----98999-8619----999985427---


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999865224784300112104542478999998709965899631711100146899999999998717998642
Q gi|254780200|r   96 RDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLR  175 (343)
Q Consensus        96 ~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~  175 (343)
                              .+|..  +-.|.++-+.-.|.+.+.+++|.++|++-|+++.         ||.     +         +++.
T Consensus        59 --------TRL~D--G~~V~~s~~~v~~~lq~~i~~le~~G~d~ilLlC---------TG~-----F---------~~l~  105 (224)
T PRK10481         59 --------TRLRD--GQQAHVSRQKVERDLQSVIEVLDNQGYDVILLLC---------TGN-----F---------PSLT  105 (224)
T ss_pred             --------EEECC--CCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEE---------CCC-----C---------CCCC
T ss_conf             --------88069--9879988899788899999999867998999972---------467-----8---------8866


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             13345578006899999999999733899866999833675026762799888999999999997266756704786225
Q gi|254780200|r  176 TVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSR  255 (343)
Q Consensus       176 ~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr  255 (343)
                      --+..--.|.-|  +...++ ++-.  +...- +|.             |-..|+....+.    -  .......+|-..
T Consensus       106 ~~~~lll~P~ri--l~~lV~-ai~~--~~~lG-Vvv-------------P~~eQ~~~~~~k----W--~~~~~~~~~~~a  160 (224)
T PRK10481        106 ARNTLLLEPSRI--LPPLVA-AIVD--GHQLG-VIV-------------PVEEQLALQAKK----W--QVLQKPPVVSLA  160 (224)
T ss_pred             CCCCEEECHHHH--HHHHHH-HHCC--CCEEE-EEE-------------CCHHHHHHHHHH----H--HHCCCCEEEEEE
T ss_conf             678436515886--689999-8568--98699-996-------------278999999998----8--734786169983


Q ss_pred             CCC--CCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHH
Q ss_conf             777--654430268999989976998399974405422125
Q gi|254780200|r  256 FGR--IKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLE  294 (343)
Q Consensus       256 ~Gp--~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lE  294 (343)
                       -|  +.|  ..+.++-++|..+|..=|+.=|+||...|=.
T Consensus       161 -sPY~g~~--~~l~~Aa~~L~~~gadlivLDCiGYt~~~r~  198 (224)
T PRK10481        161 -SPYHGSE--QKLIDAGKELLAQGADLIVLDCLGYHQRHRD  198 (224)
T ss_pred             -CCCCCCH--HHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf             -7988988--9999999999865999999987777599999


No 131
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910   Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 .    Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair.   The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase .   The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=32.77  E-value=32  Score=15.27  Aligned_cols=166  Identities=17%  Similarity=0.225  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHCCCCEE-EEEECCHHHHHHHHHHHHHHHHHHHHHHCC------------CCCCCCCCCCCCCCHHHHHHH
Q ss_conf             4789999987099658-996317111001468999999999987179------------986421334557800689999
Q gi|254780200|r  125 VKEIINNLREEGCDRL-LIFPLYPQYSAATTGTAQDKVFQELIHMRW------------SPSLRTVPPYYEDSDYISALA  191 (343)
Q Consensus       125 i~~~l~~l~~~g~~~i-i~lPLyPqyS~sTtgS~~~~~~~~l~~~~~------------~~~~~~I~~~~~~p~yI~a~~  191 (343)
                      -++-|++|.+-|+++| |++           .|.++.+.+..++=+.            +-.+++  .||--|+.-..--
T Consensus       249 ~e~~id~ML~~G~TrVElGV-----------Qtiy~~i~~~~kRGH~V~~~~~at~llrDaG~KV--~yH~MPGlPGs~f  315 (573)
T TIGR01211       249 REEEIDRMLKLGATRVELGV-----------QTIYNDILERIKRGHTVRDVVEATRLLRDAGLKV--VYHIMPGLPGSSF  315 (573)
T ss_pred             CHHHHHHHHHCCCCEEEEEE-----------ECCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCE--EEECCCCCCCCCH
T ss_conf             86889999835984899752-----------0726899998378985899999987766504622--0311753335663


Q ss_pred             HHHHHH----HHHCCCCCCEE----EEEECCCCHH-HHHHCCCC-HHHHHHHHHHHHHHHCCCCCCCE-E----------
Q ss_conf             999999----97338998669----9983367502-67627998-88999999999997266756704-7----------
Q gi|254780200|r  192 QSIREH----FESIQWTPEML----LVSFHQMPVS-YLLKGDPY-GCHCHKTARLLKEFLSWPDDRFK-I----------  250 (343)
Q Consensus       192 ~~I~~~----l~~~~~~~~~l----lfSaHglP~~-~~~~gDpY-~~q~~~t~~~i~~~l~~~~~~~~-l----------  250 (343)
                      ++-.+.    +++..+++|+|    =+.--|.+.= +=++|+ | +...+|++++|++...+.+ +|. +          
T Consensus       316 ErDl~~Fr~~Fedp~FkPDmLKIYPTLV~rGT~LY~lWk~G~-Y~PY~~eEaveLiv~~~~~~P-~WvR~~RiQRDIP~~  393 (573)
T TIGR01211       316 ERDLKMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGE-YKPYTTEEAVELIVEIKKIMP-KWVRIQRIQRDIPAK  393 (573)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCHHHHHHCCC-CCCCCHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCC
T ss_conf             568999988626879897861566710234761168886789-987767899999999997389-735775774057851


Q ss_pred             -----EEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC--CHHHHCCHHHHHHHHH--HHHHHHHHCCCCE
Q ss_conf             -----86225777654430268999989976998399974--4054221255888758--9999999759975
Q gi|254780200|r  251 -----CFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT--PGFSSDCLETSYEIAH--EAKEIFVNGGGEK  314 (343)
Q Consensus       251 -----~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p--~gFvsD~lETl~Eidi--e~~e~~~e~Gg~~  314 (343)
                           ...|-+|-         =+...|.+.|++==.|=|  +|-..++--+..|+|.  -.+|....+||.+
T Consensus       394 ~iv~GV~kSNLr~---------Lv~~rm~e~G~~CrcIRcREVGh~~~~~gv~pe~e~v~L~ve~Y~A~GG~E  457 (573)
T TIGR01211       394 LIVAGVKKSNLRE---------LVYRRMKEEGIKCRCIRCREVGHQMVKPGVQPEVENVELIVEEYAASGGRE  457 (573)
T ss_pred             EEECCCCCCCHHH---------HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf             0132645267789---------999999956898870466760200468885531101377763101488568


No 132
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=32.66  E-value=37  Score=14.81  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=10.2

Q ss_pred             HHHHHHHCCC-CEEEEEECCHHHH
Q ss_conf             9999987099-6589963171110
Q gi|254780200|r  128 IINNLREEGC-DRLLIFPLYPQYS  150 (343)
Q Consensus       128 ~l~~l~~~g~-~~ii~lPLyPqyS  150 (343)
                      .++++++... .+|+++.+.|...
T Consensus        80 ii~~i~~~~p~~~Ii~~~~~P~~~  103 (174)
T cd01841          80 IIEQIREEFPNTKIYLLSVLPVLE  103 (174)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             999999978998799983278777


No 133
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=32.30  E-value=35  Score=14.94  Aligned_cols=35  Identities=29%  Similarity=0.294  Sum_probs=15.1

Q ss_pred             CCCCCCHHHHHHHHHHHHC-CCCCEE--EECCHHHHCCH
Q ss_conf             7654430268999989976-998399--97440542212
Q gi|254780200|r  258 RIKCLEPPTDKTVEKLAHD-GIKSLA--IITPGFSSDCL  293 (343)
Q Consensus       258 p~~WL~P~t~~~l~~L~~~-G~k~v~--v~p~gFvsD~l  293 (343)
                      +++++.+.|.+++.+++++ | |.++  --+|||+.+++
T Consensus       155 ~g~~T~~e~~~~~~~~~~~ig-K~~vv~~D~pGFi~NRi  192 (307)
T COG1250         155 RGEKTSDETVERVVEFAKKIG-KTPVVVKDVPGFIVNRL  192 (307)
T ss_pred             CCCCCCHHHHHHHHHHHHHCC-CCCEEECCCCCEEHHHH
T ss_conf             688789999999999999859-98874267886125777


No 134
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=32.14  E-value=37  Score=14.75  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=19.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             45578006899999999999733899866999833
Q gi|254780200|r  179 PYYEDSDYISALAQSIREHFESIQWTPEMLLVSFH  213 (343)
Q Consensus       179 ~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaH  213 (343)
                      -+..+.++++--+....++....+ ...++++-.|
T Consensus       120 ~~~tdqGiieg~A~e~~r~r~~L~-~~v~vlADv~  153 (263)
T COG0434         120 AYATDQGIIEGNAAELARYRARLG-SRVKVLADVH  153 (263)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHCC-CCCEEEEECH
T ss_conf             276356501444889999898616-7737976111


No 135
>TIGR01916 F420_puta_dedox F420-dependent oxidoreductase, putative; InterPro: IPR008225 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function..
Probab=31.96  E-value=32  Score=15.25  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEE-----------------ECCCCHHHHHHC--CCCHHHHHHHHHHHHHHHC
Q ss_conf             999999999997338998669998-----------------336750267627--9988899999999999726
Q gi|254780200|r  188 SALAQSIREHFESIQWTPEMLLVS-----------------FHQMPVSYLLKG--DPYGCHCHKTARLLKEFLS  242 (343)
Q Consensus       188 ~a~~~~I~~~l~~~~~~~~~llfS-----------------aHglP~~~~~~g--DpY~~q~~~t~~~i~~~l~  242 (343)
                      ++.|+.|++.|++.-+...-+|.|                 +=||+.---.+|  |.|..++.-|..+|++.|.
T Consensus       137 D~SA~~ir~~L~el~G~~VgVIITDT~GRpFR~G~vGvAiG~aG~~~l~D~~G~~DlyGreL~~T~vAvADELA  210 (260)
T TIGR01916       137 DASAEKIRRGLRELLGKDVGVIITDTNGRPFREGQVGVAIGAAGVKALKDWRGEKDLYGRELEVTVVAVADELA  210 (260)
T ss_pred             HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCEEEEEEHHHHH
T ss_conf             78999999999986398478999718888401687437881004047873278959888822122221034788


No 136
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=31.95  E-value=38  Score=14.73  Aligned_cols=23  Identities=13%  Similarity=0.364  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEECCH
Q ss_conf             26899998997699839997440
Q gi|254780200|r  265 PTDKTVEKLAHDGIKSLAIITPG  287 (343)
Q Consensus       265 ~t~~~l~~L~~~G~k~v~v~p~g  287 (343)
                      .+-+.+++|.+.|.+.|+++|+.
T Consensus        75 ~~~~~i~~Lk~~GA~~Ilv~pIe   97 (100)
T TIGR03455        75 VVNELIDKLKAAGARDILVLPIE   97 (100)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEHH
T ss_conf             99999999998799779991365


No 137
>KOG1461 consensus
Probab=31.79  E-value=38  Score=14.71  Aligned_cols=21  Identities=19%  Similarity=0.556  Sum_probs=13.6

Q ss_pred             CCHHHHHHHHHHCCCCEEEEE
Q ss_conf             424789999987099658996
Q gi|254780200|r  123 PSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       123 P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      |-|+-+|.-|.+.|++++.++
T Consensus        56 pmIdYtL~~L~~agV~eVfvf   76 (673)
T KOG1461          56 PMIDYTLEWLERAGVEEVFVF   76 (673)
T ss_pred             HHHHHHHHHHHHCCCEEEEEE
T ss_conf             679999999986596189999


No 138
>pfam09379 FERM_N FERM N-terminal domain. This domain is the N-terminal ubiquitin-like structural domain of the FERM domain.
Probab=31.61  E-value=38  Score=14.69  Aligned_cols=36  Identities=11%  Similarity=0.134  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHCCCCCC-CEEEEECCCCCCCCCCHHH
Q ss_conf             99999999972667567-0478622577765443026
Q gi|254780200|r  231 HKTARLLKEFLSWPDDR-FKICFQSRFGRIKCLEPPT  266 (343)
Q Consensus       231 ~~t~~~i~~~l~~~~~~-~~l~fQSr~Gp~~WL~P~t  266 (343)
                      .+-...|.+.+|+.+.. +.++|+.+-|...||.|+-
T Consensus        20 ~~ll~~Vc~~l~l~E~~yFGL~y~~~~~~~~WLd~~k   56 (79)
T pfam09379        20 QELLDQVCQRLGLREKDYFGLQFNDKKNERIWLDLDK   56 (79)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             9999999977596644633689999999808289998


No 139
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=31.41  E-value=39  Score=14.67  Aligned_cols=64  Identities=20%  Similarity=0.198  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCC---------------CCC-------CCHHHHHHHHHHHHCCCCCEEEECC--H
Q ss_conf             999999997266756704786225777---------------654-------4302689999899769983999744--0
Q gi|254780200|r  232 KTARLLKEFLSWPDDRFKICFQSRFGR---------------IKC-------LEPPTDKTVEKLAHDGIKSLAIITP--G  287 (343)
Q Consensus       232 ~t~~~i~~~l~~~~~~~~l~fQSr~Gp---------------~~W-------L~P~t~~~l~~L~~~G~k~v~v~p~--g  287 (343)
                      +-++.+++.||.+   +.+....|.++               .-.       .+=++.++.+.|.++|.++|.+++.  =
T Consensus       189 krA~~~A~~L~~~---~a~~~K~R~~~~~~e~~~~iGdV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~a~aTHgv  265 (340)
T PRK00553        189 KRARLIAESLELP---LAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGL  265 (340)
T ss_pred             HHHHHHHHHCCCC---EEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             9999999982996---7998534578986411344555468548952524431256999999999879987999997951


Q ss_pred             HHHCCHHHHHH
Q ss_conf             54221255888
Q gi|254780200|r  288 FSSDCLETSYE  298 (343)
Q Consensus       288 FvsD~lETl~E  298 (343)
                      |.-+++|-+.|
T Consensus       266 fsg~A~eri~~  276 (340)
T PRK00553        266 FNKNAIQLFDE  276 (340)
T ss_pred             CCHHHHHHHHH
T ss_conf             48579999985


No 140
>COG3739 Uncharacterized integral membrane protein [Function unknown]
Probab=31.35  E-value=19  Score=16.77  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=27.9

Q ss_pred             HCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             709965899631711100146899999999998
Q gi|254780200|r  134 EEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI  166 (343)
Q Consensus       134 ~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~  166 (343)
                      +.|+.+|..+|||--|-++.+||+..+..+.+.
T Consensus       100 e~~~~Ki~GVPLysGFMYaaVgSYi~qaWr~fD  132 (263)
T COG3739         100 EFGYSKIFGVPLYSGFMYAAVGSYICQAWRLFD  132 (263)
T ss_pred             CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             046777538503767799999999999999823


No 141
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.98  E-value=39  Score=14.62  Aligned_cols=99  Identities=13%  Similarity=0.281  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHCCC-CCCC-----HH--HHHC------CCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             75999999998652247-8430-----01--1210------454247899999870996589963171110014689999
Q gi|254780200|r   94 HTRDQATNLAKRLESIS-SIVV-----DW--AMRY------GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQD  159 (343)
Q Consensus        94 ~t~~qa~~L~~~L~~~~-~~~V-----~~--amry------~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~  159 (343)
                      +|++....+.+++.+.+ +..|     .+  +++.      -=|..++.+++|++.|++  +++-+-|..+..+  .   
T Consensus        27 ~~q~ev~~va~~~r~~~iP~dvi~lD~~~~~~~~~Ftwd~~rFPdp~~mi~~L~~~G~k--lv~~i~P~v~~~~--~---   99 (303)
T cd06592          27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFR--VTLWVHPFINTDS--E---   99 (303)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCE--EEEEECCCCCCCC--H---
T ss_conf             78999999999999849998869981724458682375821289989999999986994--8999555105885--8---


Q ss_pred             HHHHHHHHHCCC---C--CCCCCCCC---------CCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999871799---8--64213345---------57800689999999999973
Q gi|254780200|r  160 KVFQELIHMRWS---P--SLRTVPPY---------YEDSDYISALAQSIREHFES  200 (343)
Q Consensus       160 ~~~~~l~~~~~~---~--~~~~I~~~---------~~~p~yI~a~~~~I~~~l~~  200 (343)
                       .++++.+.+..   +  ....+..|         +.+|.-.+.|.+.+++.+.+
T Consensus       100 -~~~e~~~~g~~vk~~~g~~p~~~~~W~G~~~~~Dftnp~ar~Ww~~~~~~~~~~  153 (303)
T cd06592         100 -NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEK  153 (303)
T ss_pred             -HHHHHHHCCCEEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -789898689789758998454001258976531689979999999999988874


No 142
>pfam07429 Fuc4NAc_transf 4-alpha-L-fucosyltransferase (Fuc4NAc transferase). This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (EC 2.4.1.-) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc.
Probab=30.87  E-value=39  Score=14.61  Aligned_cols=26  Identities=27%  Similarity=0.618  Sum_probs=17.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf             17868889987666512574788999998707
Q gi|254780200|r   52 ELPSWQWRPILFGYILNFRPSKIKHAYAKIWN   83 (343)
Q Consensus        52 ~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~   83 (343)
                      ..+.++|..+|.|-|.+.+      .|=.||+
T Consensus        87 QFN~~LWLALl~Gki~~~q------~~WhIWG  112 (361)
T pfam07429        87 QFNPWLWLALLSGKIKPAQ------FSWHIWG  112 (361)
T ss_pred             CCCHHHHHHHHHCCCCHHC------EEEEEEC
T ss_conf             6888999999809755020------6999987


No 143
>PRK13122 consensus
Probab=30.59  E-value=40  Score=14.58  Aligned_cols=212  Identities=16%  Similarity=0.163  Sum_probs=95.6

Q ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHCCCCCCCHHHHH
Q ss_conf             78679999717888999988999999987489544117868889987666512574788999-99870778874045777
Q gi|254780200|r   16 FGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA-YAKIWNTAKNESILRTH   94 (343)
Q Consensus        16 ~~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~-Y~~Iw~~~gg~SPL~~~   94 (343)
                      |.|-=|=.+ +|.|+.   .+..+.|.+  +.-++|++.-++--|+.-|       +-++.. ++.+    .+|.-+...
T Consensus         1 ~~K~fipyi-~g~pd~---~~~~~~l~~--~GaDiiElGiPfSDP~ADG-------pvIQ~A~~rAL----~~G~~~~~~   63 (242)
T PRK13122          1 MTKLFIPYI-MGNKDL---IENATLLSE--NGADIIEIGVPFSDPVADG-------PVIMEAGQQAI----KQGITIDYI   63 (242)
T ss_pred             CCEEEEEEE-CCCCCH---HHHHHHHHH--CCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHHH
T ss_conf             972377762-689999---999999997--5999999789888866658-------99999999999----769989999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHH----HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             599999999865224784300112104542478----9999987099658996317111001468999999999987179
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPSVKE----IINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRW  170 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~----~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~  170 (343)
                      .+ +.+++++.    .+.++ +-|.|++|...-    -++++++.|++-+++ |=.|.-       -.+++.+.+.+.+.
T Consensus        64 ~~-~l~~~r~~----~~~pi-vlM~Y~N~i~~~G~~~F~~~~~~~GvdGvIi-pDLP~e-------e~~~~~~~~~~~gi  129 (242)
T PRK13122         64 FN-QLEKHGDQ----IKCNY-VLMTYYNIICHYGEQAFFEKCRDTGVYGLII-PDLPYE-------LSQRLKQQFSHYGV  129 (242)
T ss_pred             HH-HHHHHCCC----CCCCE-EEEEECHHHHHHCHHHHHHHHHHCCCCEEEC-CCCCHH-------HHHHHHHHHHHCCC
T ss_conf             99-99973136----79877-9998516988727999999998769986777-899878-------89999999986798


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             98642133455780068999999999997338998669998336750267627998889999999999972667567047
Q gi|254780200|r  171 SPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKI  250 (343)
Q Consensus       171 ~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l  250 (343)
                      . .+.+|.+=. .+       ++|+.-.+..++  .....|.-|+-=   .+. .....+.+..+.|.+.-+.   +..+
T Consensus       130 ~-~I~lvaPtt-~~-------~Ri~~i~~~s~G--FiY~vs~~GvTG---~~~-~~~~~~~~~i~~ik~~t~~---Pv~v  191 (242)
T PRK13122        130 K-IISLVAMTT-DD-------KRIKDIVSHAEG--FIYTVTMNATTG---QNG-AFHPELKRKIESIKAIANV---PVVA  191 (242)
T ss_pred             C-EEEEECCCC-CH-------HHHHHHHHHCCC--CEEEEECCCCCC---CCC-CCCHHHHHHHHHHHHHCCC---CEEE
T ss_conf             6-898718999-89-------999999982999--669873354357---655-5658899999999972599---8587


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHH
Q ss_conf             86225777654430268999989976998399974405
Q gi|254780200|r  251 CFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGF  288 (343)
Q Consensus       251 ~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gF  288 (343)
                      +|    |      =++.+.++++.+ +..-| |+==+|
T Consensus       192 GF----G------I~~~e~v~~i~~-~ADGv-IVGSai  217 (242)
T PRK13122        192 GF----G------IRTPQHVADIKE-VADGI-VIGSEI  217 (242)
T ss_pred             EC----C------CCCHHHHHHHHH-HCCEE-EECHHH
T ss_conf             15----8------799999999981-19999-984899


No 144
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820    This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=30.58  E-value=40  Score=14.58  Aligned_cols=56  Identities=18%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCEEEE
Q ss_conf             68999999999987179986421334557800689999999999973389--9866999
Q gi|254780200|r  154 TGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQW--TPEMLLV  210 (343)
Q Consensus       154 tgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~--~~~~llf  210 (343)
                      +|+++|+...+..+....-.-.+|+|| ||+.-|+-=...--|-+++.+.  +.|.++.
T Consensus       120 ~GDtFD~~aa~A~~~~~~~g~~~iPPF-DD~~IIeGQGTva~Eil~ql~~~~k~D~V~~  177 (415)
T TIGR02079       120 VGDTFDEAAAAAKESVEKEGKTFIPPF-DDPDIIEGQGTVAVEILEQLEEETKIDYVVV  177 (415)
T ss_pred             ECCCHHHHHHHHHHHHHHCCCEECCCC-CCHHHHHCHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             557057899999999997189016899-8756651102765667750586767768998


No 145
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323   These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=30.41  E-value=40  Score=14.56  Aligned_cols=121  Identities=17%  Similarity=0.287  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC--CHHHHHHHH
Q ss_conf             688899876665125747889999987077887404577759999999986522478430011210454--247899999
Q gi|254780200|r   55 SWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKP--SVKEIINNL  132 (343)
Q Consensus        55 ~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P--~i~~~l~~l  132 (343)
                      -.-|++|-..-    ..|.++++|++.-......+=+..+=++....           .+..=-+|..|  ...+++++|
T Consensus        45 lgK~dHiral~----~~P~iA~rw~~vFgrlp~~~Di~aiYe~F~pl-----------~ia~~a~haapIp~~levia~l  109 (199)
T TIGR01422        45 LGKWDHIRALT----ELPRIAERWRRVFGRLPTEADIQAIYEEFMPL-----------QIAKVAEHAAPIPAVLEVIAEL  109 (199)
T ss_pred             CCHHHHHHHHH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHH
T ss_conf             63689999986----30289999999708999774589999861689-----------9998655405553689999999


Q ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             87099658996317111001468999999999987179986421334557800689999999999973389986699983
Q gi|254780200|r  133 REEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSF  212 (343)
Q Consensus       133 ~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSa  212 (343)
                      +..|+.  |.         |||| +-+++++.+                            | ..-+...+++|+|+-+ 
T Consensus       110 R~rGiK--IG---------ScsG-Ypr~vMd~v----------------------------~-~~Aa~~GY~pD~vVat-  147 (199)
T TIGR01422       110 RERGIK--IG---------SCSG-YPREVMDIV----------------------------V-AEAALQGYKPDFVVAT-  147 (199)
T ss_pred             HHCCCE--EE---------CCCC-CHHHHHHHH----------------------------H-HHHHHCCCCCCEEECC-
T ss_conf             738844--42---------4798-757899999----------------------------9-9997478976642466-


Q ss_pred             CCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf             367502676279988899999999
Q gi|254780200|r  213 HQMPVSYLLKGDPYGCHCHKTARL  236 (343)
Q Consensus       213 HglP~~~~~~gDpY~~q~~~t~~~  236 (343)
                      --+|    ..|-||+.+|++++=.
T Consensus       148 Ddvp----q~GRP~P~~alkNvie  167 (199)
T TIGR01422       148 DDVP----QAGRPYPFMALKNVIE  167 (199)
T ss_pred             CCCC----CCCCCHHHHHHHHHHH
T ss_conf             2246----7889747899998987


No 146
>pfam07796 DUF1638 Protein of unknown function (DUF1638). This family contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins. These proteins are expressed by archaeal species of the Methanosarcina genus.
Probab=30.30  E-value=40  Score=14.54  Aligned_cols=131  Identities=13%  Similarity=0.124  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHCC----CCCCCHHHHHCCC--CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999865224----7843001121045--42478999998709965899631711100146899999999998717
Q gi|254780200|r   96 RDQATNLAKRLESI----SSIVVDWAMRYGK--PSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR  169 (343)
Q Consensus        96 ~~qa~~L~~~L~~~----~~~~V~~amry~~--P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~  169 (343)
                      +.+..+|++.+++.    +.+-|.+|- +|.  .-++..+++   .|+.+    |--++.=..-.|+-  +..+.+.   
T Consensus        12 ~~L~~~v~~~i~~~~~~~d~Ill~YG~-CG~g~g~l~~~~~~---~~~~~----~~~~dCi~~~lG~~--~~~~~~~---   78 (166)
T pfam07796        12 EKLKSAVYEAIDEMREFSDGILLFYGD-CGTGLGLLERDCAE---LGVLR----PIGDDCISFLLGGN--AFYAELL---   78 (166)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCHHHHHHHHH---CCCCC----CCCCCHHHHHCCHH--HHHHHHH---
T ss_conf             999999999999705026828999724-88871269998876---59510----68853899981968--8999973---


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             998642133455780068999999999997338998669998336750267627998889999999999972667
Q gi|254780200|r  170 WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWP  244 (343)
Q Consensus       170 ~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~  244 (343)
                           +-...||-.|..++.|-+.+-+.+.....+.-.-.+-.|=-.+-+++.|..+.....+.++..++.+|++
T Consensus        79 -----~~~gtffLT~~w~~~~~~~~~~~~G~d~~~~l~~~~f~~Y~rv~~i~tg~~~~~~~~~~a~~~A~~lgl~  148 (166)
T pfam07796        79 -----REPGTFYLTPGWARQWDAFVIKRLGLDRHPELRDMYFGHYRKVVYIDTGLYQTDDFEAKAREFADRLGLE  148 (166)
T ss_pred             -----CCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             -----6799699556999989999998628773468999998278679998179987677999999999983997


No 147
>pfam05675 DUF817 Protein of unknown function (DUF817). This family consists of several bacterial proteins of unknown function.
Probab=30.23  E-value=40  Score=14.54  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=27.9

Q ss_pred             HCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             709965899631711100146899999999998
Q gi|254780200|r  134 EEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI  166 (343)
Q Consensus       134 ~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~  166 (343)
                      ++|+-+|..+|||--|=++++||++.++.|-..
T Consensus        89 e~~~~ki~gVPLfsGFMYAaVGSYi~rawR~fd  121 (235)
T pfam05675        89 EEGLLKIFGVPLFSGFMYASVGSYICRAWRRFD  121 (235)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHE
T ss_conf             543202536553021289999999999999950


No 148
>pfam03786 UxuA D-mannonate dehydratase (UxuA). UxuA (this family) and UxuB are required for hexuronate degradation.
Probab=30.11  E-value=40  Score=14.52  Aligned_cols=93  Identities=15%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCCCCHHHHHHHHHHHHC----CCCCEEEEC
Q ss_conf             833675026762799888999999999997266756704786225-777654430268999989976----998399974
Q gi|254780200|r  211 SFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSR-FGRIKCLEPPTDKTVEKLAHD----GIKSLAIIT  285 (343)
Q Consensus       211 SaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr-~Gp~~WL~P~t~~~l~~L~~~----G~k~v~v~p  285 (343)
                      +.-|+|.- +..        .+..+.+.+...-+.  ..+||.+- +|  .--+=++.+.+++++..    -.|||-..+
T Consensus       212 ~l~GlPRI-~s~--------~ed~~~ll~~v~Sp~--NGitfC~GSlg--~~~~nDl~~~ir~f~~RI~FvH~RnV~~~~  278 (350)
T pfam03786       212 PIFGLPRI-VTN--------IEDYQRLLELVDSPY--NGITLCTGSYG--ARPDNDLPEMIREFADRIYFAHLRNIKREE  278 (350)
T ss_pred             CCCCCCEE-CCC--------HHHHHHHHHHCCCCC--CCEEEECCCCC--CCCCCCHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             55787633-189--------999999998479941--26787114566--788899999999984310245430111358


Q ss_pred             C--HHH-HCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             4--054-2212558887589999999759975898
Q gi|254780200|r  286 P--GFS-SDCLETSYEIAHEAKEIFVNGGGEKFTQ  317 (343)
Q Consensus       286 ~--gFv-sD~lETl~Eidie~~e~~~e~Gg~~~~r  317 (343)
                      .  +|. ++|+|=-.|+---.+. ..+.|...+.|
T Consensus       279 ~~~~F~E~~hl~G~~DM~~v~ka-l~~~~~~gp~R  312 (350)
T pfam03786       279 GPKDFYETAHLEGSTDMASVMKA-YHEEGFRGPMR  312 (350)
T ss_pred             CCCCEEECCCCCCCCHHHHHHHH-HHHHCCCCCCC
T ss_conf             99984753666788309999999-99809998534


No 149
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062   Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ  and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=30.06  E-value=40  Score=14.52  Aligned_cols=257  Identities=20%  Similarity=0.218  Sum_probs=134.0

Q ss_pred             CCCCCC--------CCCCEEEEEE-------CCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHH-C----
Q ss_conf             889987--------7786799997-------1788899998899999998748954411786888998766651-2----
Q gi|254780200|r    9 RNHPKV--------KFGKIGVLLV-------NLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYIL-N----   68 (343)
Q Consensus         9 ~~~p~~--------~~~K~gvLL~-------n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~-~----   68 (343)
                      |+||.|        .-.++-||+=       .+||=...|..|=+.|-..+ -|+  +++|+-  +.||.|==| |    
T Consensus        20 SAHPlVlEAA~~~A~~~~~~VLIEATsNQVNQfGGYTGMtP~DFr~fV~~I-A~~--~gfP~~--rl~LGGDHLGPN~Wq   94 (430)
T TIGR02810        20 SAHPLVLEAALRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETI-ADR--IGFPRE--RLILGGDHLGPNPWQ   94 (430)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHH-HHH--CCCHHH--HHHHCCCCCCCCCCC
T ss_conf             787188999999887528971377311430357888799707899999999-973--157379--886067757878876


Q ss_pred             CCC--------HHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHH-----HHHHH----C-------CCCCCC
Q ss_conf             574--------7889999987077----------887404577759999999-----98652----2-------478430
Q gi|254780200|r   69 FRP--------SKIKHAYAKIWNT----------AKNESILRTHTRDQATNL-----AKRLE----S-------ISSIVV  114 (343)
Q Consensus        69 ~R~--------~~~~~~Y~~Iw~~----------~gg~SPL~~~t~~qa~~L-----~~~L~----~-------~~~~~V  114 (343)
                      -++        ..-.+.|-+=|+.          .|.++||-.-|-.-.++-     ++...    +       +++|||
T Consensus        95 ~lpA~~AM~~A~~lv~aYv~AGF~KIHLDaSM~CagDP~PL~D~t~A~RAArLc~VAE~a~~~~~ge~~p~YVIGTEVPv  174 (430)
T TIGR02810        95 HLPAEEAMEKAEALVKAYVEAGFTKIHLDASMSCAGDPIPLPDATIAERAARLCAVAEAAATEERGETKPVYVIGTEVPV  174 (430)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf             77679999999999999998588501011664578878663605789999999999999987422788850365102248


Q ss_pred             HHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH--HH-------CCCCCCCCCCCCCCCCH
Q ss_conf             0112104542478999998709965899631711100146899999999998--71-------79986421334557800
Q gi|254780200|r  115 DWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI--HM-------RWSPSLRTVPPYYEDSD  185 (343)
Q Consensus       115 ~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~--~~-------~~~~~~~~I~~~~~~p~  185 (343)
                      ==|-.=|.-   |+.+.|....     +-+--|+ +..+|-.+.++.|...-  ..       -..|.+.|     ||..
T Consensus       175 PGGetGGDa---DA~e~l~~he-----l~VT~Pe-aA~~Tl~~HR~AF~~~GL~~aw~RVialVVQPGVEF-----dh~~  240 (430)
T TIGR02810       175 PGGETGGDA---DALEALQEHE-----LAVTTPE-AARETLEAHRKAFAARGLEDAWPRVIALVVQPGVEF-----DHSN  240 (430)
T ss_pred             CCCCCCCCH---HHHHHHHCCC-----CCCCCHH-HHHHHHHHHHHHHHHHCCHHHHHCEEEEEECCCCCC-----CCCC
T ss_conf             878887650---4676653047-----7888888-899999999999987171223111033442484215-----9873


Q ss_pred             ---HHHHHHHHHHHHHHHCCCCCCEEEEEECCC----CHHH---HHH------------------------------CCC
Q ss_conf             ---689999999999973389986699983367----5026---762------------------------------799
Q gi|254780200|r  186 ---YISALAQSIREHFESIQWTPEMLLVSFHQM----PVSY---LLK------------------------------GDP  225 (343)
Q Consensus       186 ---yI~a~~~~I~~~l~~~~~~~~~llfSaHgl----P~~~---~~~------------------------------gDp  225 (343)
                         |=..-++.+.+.+++.    ..+||=|||.    |..+   |+.                              +++
T Consensus       241 V~~Y~p~~A~~LS~~i~~~----p~lVFEAHSTDYQT~~Al~~LV~DHFAILKVGPaLTFALREALFAL~~Ie~eL~p~~  316 (430)
T TIGR02810       241 VIDYQPERAQALSQVIEDT----PTLVFEAHSTDYQTAAALRALVRDHFAILKVGPALTFALREALFALAKIEDELVPAE  316 (430)
T ss_pred             CCCCCHHHHHHHHHHHCCC----CCEEEEECCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             2148978999999986268----975887447656777899999763885102560235999999999999998527964


Q ss_pred             CHHH-HHHHHHHHHHHHCCCCCCCEEEEEC------------CCCCCC--CCCHHHHHHHHHHHHC--CCCCEEEECCHH
Q ss_conf             8889-9999999999726675670478622------------577765--4430268999989976--998399974405
Q gi|254780200|r  226 YGCH-CHKTARLLKEFLSWPDDRFKICFQS------------RFGRIK--CLEPPTDKTVEKLAHD--GIKSLAIITPGF  288 (343)
Q Consensus       226 Y~~q-~~~t~~~i~~~l~~~~~~~~l~fQS------------r~Gp~~--WL~P~t~~~l~~L~~~--G~k~v~v~p~gF  288 (343)
                      =..+ |.++.+.||-.  - +..|.==|++            =..+..  |-.|.+.+..++|...  | +   =+|-+-
T Consensus       317 ~~~~rL~~v~E~vMl~--~-P~~W~~YY~G~~~~q~L~r~ySySDRIRYYWP~P~~~~Av~~L~~nL~~-~---~iPl~L  389 (430)
T TIGR02810       317 ARSHRLREVIEQVMLD--E-PGYWKKYYHGDAAEQRLDRHYSYSDRIRYYWPHPRIAAAVETLMANLDG-Q---PIPLTL  389 (430)
T ss_pred             HHHCCCHHHHHHHHHH--H-HHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-C---CCCHHH
T ss_conf             3201457999999886--1-4202026898888999986077213533579707899999999985378-8---896477


Q ss_pred             HHCCHHH
Q ss_conf             4221255
Q gi|254780200|r  289 SSDCLET  295 (343)
Q Consensus       289 vsD~lET  295 (343)
                      +|=.|=-
T Consensus       390 lSQYLP~  396 (430)
T TIGR02810       390 LSQYLPE  396 (430)
T ss_pred             HHHHHHH
T ss_conf             9998589


No 150
>pfam01888 CbiD CbiD. CbiD is essential for cobalamin biosynthesis in both S. typhimurium and B. megaterium, no functional role has been ascribed to the protein. The CbiD protein has a putative S-AdoMet binding site. It is possible that CbiD might have the same role as CobF in undertaking the C-1 methylation and deacylation reactions required during the ring contraction process.
Probab=29.75  E-value=41  Score=14.48  Aligned_cols=77  Identities=18%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf             33455780068999999999997338998669998336750267627998889999999999972667567047862257
Q gi|254780200|r  177 VPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRF  256 (343)
Q Consensus       177 I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~  256 (343)
                      |.+ ++++.|.+.+...++.+...   ..++++|+-=+.-                 -+..++.++++.+.+-     +.
T Consensus       174 V~P-~S~~a~~~si~~~l~v~~a~---g~~~lvl~~G~~g-----------------~~~a~~~~~l~~~~~V-----~~  227 (261)
T pfam01888       174 VRP-MSTEAYKASLAQQIDVAAAS---GYQRLVFVPGNIG-----------------EKYARQQFGVPDDAFV-----QM  227 (261)
T ss_pred             EEE-CCCHHHHHHHHHHHHHHHHC---CCCEEEECCCHHH-----------------HHHHHHHCCCCHHHEE-----EE
T ss_conf             985-78499999999999999987---9796999448089-----------------9999986298848879-----95


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             77654430268999989976998399974
Q gi|254780200|r  257 GRIKCLEPPTDKTVEKLAHDGIKSLAIIT  285 (343)
Q Consensus       257 Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p  285 (343)
                      |  -|+++    +|+..++.|+++|+++-
T Consensus       228 g--n~iG~----~L~~A~~~g~~~ill~G  250 (261)
T pfam01888       228 A--NFVGF----MLDEAKKVGVEEILLVG  250 (261)
T ss_pred             E--HHHHH----HHHHHHHCCCCEEEEEE
T ss_conf             2--72799----99999986999899974


No 151
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria.  The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=29.68  E-value=41  Score=14.47  Aligned_cols=51  Identities=16%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             04577759999999986522478430011210454247899999870996589963
Q gi|254780200|r   89 SILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus        89 SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      +|.-.+.-+.|-.++++.+  +.+   .+...|++..+++|++..+-|+|+.+++.
T Consensus        34 n~~D~~AlE~Alrlke~~g--~~V---tvlsvGp~~a~~~Lr~alAmGaD~ai~i~   84 (202)
T cd01714          34 NPYDEYAVEEALRLKEKYG--GEV---TVVSMGPPQAEEALREALAMGADRAILVS   84 (202)
T ss_pred             CCCCHHHHHHHHHHHHCCC--CEE---EEEEECCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             9543899999999866039--889---99993747889999999970898359980


No 152
>TIGR03624 conserved hypothetical protein. Members of this protein family have a phylogenetic distribution skewed toward the Actinobacteria (high GC Gram-positive bacteria), but with a few members occuring in the archaea. The function is unknown.
Probab=29.63  E-value=11  Score=18.33  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCE-------EEEECCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999999999997266756704-------786225777654430268999989976
Q gi|254780200|r  229 HCHKTARLLKEFLSWPDDRFK-------ICFQSRFGRIKCLEPPTDKTVEKLAHD  276 (343)
Q Consensus       229 q~~~t~~~i~~~l~~~~~~~~-------l~fQSr~Gp~~WL~P~t~~~l~~L~~~  276 (343)
                      -+..+....++.|+++.+++.       .+.|..|+..|||..++.+.++++++.
T Consensus       136 lV~~NI~~~~~~l~v~~~d~rlwlalhE~ah~~lF~~vPWLr~~l~~~i~~~~~~  190 (345)
T TIGR03624       136 LVPPNIVAVERGLGVPPDDFRLWVALHEVTHRRQFRAVPWLRDHLEGAVEELAAG  190 (345)
T ss_pred             EHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             3057899999873999999999999999999999961489999999999999874


No 153
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase  (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=29.51  E-value=41  Score=14.45  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=18.3

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             045424789999987099658996
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      .+.|.|+..++.|++.|++++++.
T Consensus        29 ~gkpli~~~i~~l~~~gi~~iii~   52 (233)
T cd06425          29 CNKPMIEHQIEALAKAGVKEIILA   52 (233)
T ss_pred             CCEEHHHHHHHHHHHCCCCCCCCH
T ss_conf             998699999999998599732101


No 154
>PRK10426 alpha-glucosidase; Provisional
Probab=29.46  E-value=41  Score=14.45  Aligned_cols=202  Identities=12%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCC---------CCCCHHHH
Q ss_conf             5424789999987099658996317111001468999999999987179986----4213345---------57800689
Q gi|254780200|r  122 KPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPS----LRTVPPY---------YEDSDYIS  188 (343)
Q Consensus       122 ~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~----~~~I~~~---------~~~p~yI~  188 (343)
                      -|-.+..+++|++.|++  +.+-.-|.-+..+      ..++++++.++..+    -..+-+|         +.+|.=.+
T Consensus       313 fPDPk~mI~eL~~~G~r--v~vwInP~i~~~s------~ly~Ea~~kGylvk~~~G~~~~~~~~~~~~~~lDfTNPeA~~  384 (682)
T PRK10426        313 YPQLDSRIKQLNEEGIQ--FLAYINPYLASDG------DLCEEAAKHGYLAKDASGGDYLVEFGEFYAGVVDLTNPEAYD  384 (682)
T ss_pred             CCCHHHHHHHHHHCCCE--EEEEECCCCCCCC------HHHHHHHHCCCEEECCCCCEEEEEECCCCEEEEECCCHHHHH
T ss_conf             87989999999978988--9999678427898------789999878948988999975785158871688597988999


Q ss_pred             HHHHHHHHHHHHCCCCC------CE--EEEEEC-CCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC----
Q ss_conf             99999999997338998------66--999833-675026762799888999999999997266756704786225----
Q gi|254780200|r  189 ALAQSIREHFESIQWTP------EM--LLVSFH-QMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSR----  255 (343)
Q Consensus       189 a~~~~I~~~l~~~~~~~------~~--llfSaH-glP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr----  255 (343)
                      .+.+.|++.+.+...+.      +.  .=..+| |.+-...  ..-|...-.++.....+..+-..+   ..+-+|    
T Consensus       385 W~~~~l~k~l~d~GVdgfk~DfGE~lP~D~~~~~G~~~~~~--hN~Yp~l~ak~~ye~~~~~~~~~~---~v~f~RSg~a  459 (682)
T PRK10426        385 WFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIM--HNAWPALWAKCNYEALEETGKLGE---ILFFMRAGYT  459 (682)
T ss_pred             HHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEECCCCHHHH--CCHHHHHHHHHHHHHHHHHCCCCC---CEEEECCCCC
T ss_conf             99999998888509828961689877775247379983241--458899999999999998436787---1699505566


Q ss_pred             ----CCCCCCCCH-----HHHHHHHHHHH----CCCCCEEEEC---CHHHHCC-HHHHHHHHHHHHHHH------HHCCC
Q ss_conf             ----777654430-----26899998997----6998399974---4054221-255888758999999------97599
Q gi|254780200|r  256 ----FGRIKCLEP-----PTDKTVEKLAH----DGIKSLAIIT---PGFSSDC-LETSYEIAHEAKEIF------VNGGG  312 (343)
Q Consensus       256 ----~Gp~~WL~P-----~t~~~l~~L~~----~G~k~v~v~p---~gFvsD~-lETl~Eidie~~e~~------~e~Gg  312 (343)
                          .++.-|.+=     ++.|-|.....    .|.--+...+   -||.+.. ...-.||=+.--+..      +-+||
T Consensus       460 GsQry~~~~W~GD~~ssW~~~dgL~~~I~~gLs~glSG~~~w~~DIGGf~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~g  539 (682)
T PRK10426        460 GSQKYSTLFWAGDQNVDWSLHDGLASVVPAALSLGMSGHGLHHSDIGGYTTLFNMKRSKELLLRWCEFSAFTPVMRTHEG  539 (682)
T ss_pred             CCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCC
T ss_conf             77656553567876666764345999999987402237764455436664667899998999999998645830013689


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             758981689879899999999999
Q gi|254780200|r  313 EKFTQVPCLNSSNLSIDLLEKITR  336 (343)
Q Consensus       313 ~~~~rvp~lN~~~~fi~~La~lv~  336 (343)
                      ......-....+++.++.++..++
T Consensus       540 ~~p~~pw~~~~~~e~~~~~~k~~~  563 (682)
T PRK10426        540 NRPGDNWQFDGDAETIAHFARMTT  563 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999887556798789999999999


No 155
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=29.42  E-value=41  Score=14.44  Aligned_cols=48  Identities=27%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             HHHHHHH-HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             4789999-987099658996317111001468999999999987179986421334
Q gi|254780200|r  125 VKEIINN-LREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPP  179 (343)
Q Consensus       125 i~~~l~~-l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~  179 (343)
                      -++.+.+ +++.+++-||= --.| |+..-+..+.    ++.... ..|=+||.++
T Consensus        52 ~~~~m~~~i~~~~i~~vID-ATHP-fA~~is~na~----~a~~~~-~ipyiR~eRp  100 (246)
T pfam02571        52 GADGLAAYLREEGIDAVID-ATHP-FAAQISRNAA----AACKEL-GVPLLRLERP  100 (246)
T ss_pred             CHHHHHHHHHHCCCCEEEE-CCCC-CHHHHHHHHH----HHHHHH-CCCEEEECCC
T ss_conf             9999999999779979998-9999-6899999999----999985-9968996062


No 156
>PRK13112 consensus
Probab=29.36  E-value=42  Score=14.44  Aligned_cols=221  Identities=15%  Similarity=0.159  Sum_probs=99.7

Q ss_pred             CCEE-EEEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             8679-9997178889999889999999874-8954411786888998766651257478899999870778874045777
Q gi|254780200|r   17 GKIG-VLLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTH   94 (343)
Q Consensus        17 ~K~g-vLL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~   94 (343)
                      +|.| |..+..|-|+-.+   -.+.+..+- +.-++|++.-++--|+--|       +-++..+++--   .+|.-+...
T Consensus        16 ~r~ali~yitaG~P~~~~---s~~~l~~l~~~GaDiiElGiPFSDPvADG-------PvIQ~A~~rAL---~~G~~~~~~   82 (279)
T PRK13112         16 GRPALVTYFMGGDPDLET---SLKIMKALPKAGADIIELGMPFSDPMADG-------PAIQAAGLRAL---KAGQTLAKT   82 (279)
T ss_pred             CCCEEEEEEECCCCCHHH---HHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH---HCCCCHHHH
T ss_conf             995589886073899789---99999999877999899789989866657-------99999999999---769968899


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             599999999865224784300112104542----4789999987099658996317111001468999999999987179
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRW  170 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~  170 (343)
                       ..+...+.+.-   .+.++ +-|-|++|.    ++.-++++++.|++-+++ |=.|.--       .+++.+.+.+.+.
T Consensus        83 -~~~~~~ir~~~---~~~Pi-vlM~Y~N~i~~~G~e~F~~~~~~aGvdGvIi-pDLP~eE-------~~~~~~~~~~~~i  149 (279)
T PRK13112         83 -LYLAREFRKDD---DTTPI-VLMGYYNPIYIYGVERFLTDAKAAGVDGLIV-VDLPPEM-------DAELCIPAMKAGI  149 (279)
T ss_pred             -HHHHHHHHCCC---CCCCE-EEEEECHHHHHHCHHHHHHHHHHCCCCEEEE-CCCCHHH-------HHHHHHHHHHCCC
T ss_conf             -99999851348---99887-9985124998847999999999739987984-6999788-------8999999985783


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             98642133455780068999999999997338998669998336750267627998889999999999972667567047
Q gi|254780200|r  171 SPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKI  250 (343)
Q Consensus       171 ~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l  250 (343)
                       ..+.++.+--.        .++|+.-.+...  ......|--|+-=.    ...-..++.+..+.|.+....   +..+
T Consensus       150 -~~I~lvaPtt~--------~eRi~~i~~~s~--GFiY~Vs~~GvTG~----~~~~~~~~~~~i~~ik~~t~~---Pv~v  211 (279)
T PRK13112        150 -NFIRLATPTTD--------DKRLPKVLANTS--GFVYYVSMTGITGS----ALADTSAVGEAVARIKRHTDL---PVCV  211 (279)
T ss_pred             -CEEEEECCCCC--------HHHHHHHHHCCC--CCEEEEECCCCCCC----CCCCHHHHHHHHHHHHHHCCC---CCEE
T ss_conf             -46998258998--------999999985278--80899835666676----645648899999999971789---8767


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHH
Q ss_conf             86225777654430268999989976998399974405422125
Q gi|254780200|r  251 CFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLE  294 (343)
Q Consensus       251 ~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lE  294 (343)
                      +|    |=      ++.+....+. ++. .-+|+= |=+...+|
T Consensus       212 GF----GI------s~~e~~~~~~-~~a-DGvIVG-SAiVk~Ie  242 (279)
T PRK13112        212 GF----GV------KTPEQARAIA-AHA-DGVVVG-TAIVNALA  242 (279)
T ss_pred             EE----CC------CCHHHHHHHH-CCC-CEEEEC-HHHHHHHH
T ss_conf             83----56------9999999997-259-999987-79999998


No 157
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=29.31  E-value=42  Score=14.43  Aligned_cols=35  Identities=9%  Similarity=0.270  Sum_probs=18.3

Q ss_pred             EEEEECCCC-----CCCCCCHHHHH-HHHHHHHCCCCCEEEEC
Q ss_conf             478622577-----76544302689-99989976998399974
Q gi|254780200|r  249 KICFQSRFG-----RIKCLEPPTDK-TVEKLAHDGIKSLAIIT  285 (343)
Q Consensus       249 ~l~fQSr~G-----p~~WL~P~t~~-~l~~L~~~G~k~v~v~p  285 (343)
                      .+-|..|..     .+.++.|.-.+ +|.  ...+++.++|++
T Consensus       346 ~l~~~GR~~d~Ik~~G~~V~p~EIE~~L~--~hp~V~eaaVvg  386 (458)
T PRK09029        346 ELTILGRLDNLFISGGENIQPEEIERVIN--QHPLVQQVFVVP  386 (458)
T ss_pred             EEEEEEECCCEEEECCEEECHHHHHHHHH--HCCCCCEEEEEE
T ss_conf             38990453578998999999999999998--699916799995


No 158
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=29.21  E-value=42  Score=14.42  Aligned_cols=22  Identities=18%  Similarity=0.370  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHCCCCEEEEEECC
Q ss_conf             4789999987099658996317
Q gi|254780200|r  125 VKEIINNLREEGCDRLLIFPLY  146 (343)
Q Consensus       125 i~~~l~~l~~~g~~~ii~lPLy  146 (343)
                      ..+-++++++.|+++|+++..=
T Consensus        53 ~i~~~~~~~~kGvd~I~~isvn   74 (155)
T cd03013          53 YVENADELKAKGVDEVICVSVN   74 (155)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEC
T ss_conf             7776999997699689999809


No 159
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=29.18  E-value=42  Score=14.42  Aligned_cols=17  Identities=24%  Similarity=0.366  Sum_probs=6.3

Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             34557800689999999
Q gi|254780200|r  178 PPYYEDSDYISALAQSI  194 (343)
Q Consensus       178 ~~~~~~p~yI~a~~~~I  194 (343)
                      +.++-+|.|-+++.+.+
T Consensus       186 P~~e~Dp~fa~~l~~A~  202 (235)
T COG1489         186 PNREIDPKFAELLREAI  202 (235)
T ss_pred             CCCCCCHHHHHHHHHHH
T ss_conf             33014988999999999


No 160
>PRK13117 consensus
Probab=28.90  E-value=42  Score=14.38  Aligned_cols=221  Identities=14%  Similarity=0.103  Sum_probs=101.0

Q ss_pred             CCEEE-EEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHCCCCCCCHHHH
Q ss_conf             86799-997178889999889999999874-89544117868889987666512574788999-9987077887404577
Q gi|254780200|r   17 GKIGV-LLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHA-YAKIWNTAKNESILRT   93 (343)
Q Consensus        17 ~K~gv-LL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~-Y~~Iw~~~gg~SPL~~   93 (343)
                      +|.|+ -.+.-|-|+-   +.-.+++..+- +.-++|++.-++--|+--|       +-+++. .+.+    .+|--+..
T Consensus        15 ~~~ali~yitaG~P~~---~~t~~~~~~l~~~GaDiiElGiPfSDP~ADG-------pvIq~A~~rAL----~~G~~~~~   80 (268)
T PRK13117         15 KEGAFVPFVTLGDPSP---ELSLKIIDTLIEAGADALELGIPFSDPLADG-------PTIQNANLRAL----AAGVTPAQ   80 (268)
T ss_pred             CCCEEEEEECCCCCCH---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHH
T ss_conf             9914898872708997---9999999999966999899789988856557-------99999999998----45996999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHH----HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             759999999986522478430011210454247----8999998709965899631711100146899999999998717
Q gi|254780200|r   94 HTRDQATNLAKRLESISSIVVDWAMRYGKPSVK----EIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR  169 (343)
Q Consensus        94 ~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~----~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~  169 (343)
                       ...+.++++++.   .+.++ +-|.|.+|...    .-++++++.|++-+++-=|=+-.        .+++.+...+.+
T Consensus        81 -~~~~~~~ir~~~---~~~pi-vlM~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE--------~~~~~~~~~~~g  147 (268)
T PRK13117         81 -CFELLAKIRAKY---PTIPI-GLLLYANLVFANGIDNFYARCAEAGVDSVLIADVPVEE--------SAPFRQAAKKHG  147 (268)
T ss_pred             -HHHHHHHHHCCC---CCCCE-EEEECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHH--------HHHHHHHHHHCC
T ss_conf             -999998850047---89877-99732628987179999999997698779857999788--------589999998679


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             99864213345578006899999999999733899866999833675026762799888999999999997266756704
Q gi|254780200|r  170 WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFK  249 (343)
Q Consensus       170 ~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~  249 (343)
                      .. .+.++.+=-        -.++|++-.+...+  ...+-|--|+-=.   + ..-..++.+..+.|.+.-+.   +..
T Consensus       148 l~-~I~lv~Ptt--------~~~Ri~~i~~~a~G--FiY~vs~~GvTG~---~-~~~~~~~~~~i~~ik~~t~~---Pv~  209 (268)
T PRK13117        148 IA-PIFICPPNA--------DDDTLRQIASLGRG--YTYLLSRAGVTGA---E-NKAAAPLNHLVEKLKEYNAP---PPL  209 (268)
T ss_pred             CC-EEEEECCCC--------CHHHHHHHHHHCCC--EEEEEECCCCCCC---C-CCCCHHHHHHHHHHHHCCCC---CEE
T ss_conf             83-799847999--------99999999974798--5999836777889---8-66627799999999964799---869


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHH
Q ss_conf             786225777654430268999989976998399974405422125
Q gi|254780200|r  250 ICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLE  294 (343)
Q Consensus       250 l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lE  294 (343)
                      ++|    |=      ++.+...+..+.|..-| |+= |=+.+++|
T Consensus       210 vGF----GI------s~~e~v~~~~~~~aDGv-IVG-SaiV~~i~  242 (268)
T PRK13117        210 QGF----GI------SEPEQVKAAIKAGAAGA-ISG-SAIVKIIE  242 (268)
T ss_pred             EEE----CC------CCHHHHHHHHHCCCCEE-EEC-HHHHHHHH
T ss_conf             983----78------99999999986389989-987-89999998


No 161
>KOG3112 consensus
Probab=28.83  E-value=42  Score=14.38  Aligned_cols=29  Identities=21%  Similarity=0.527  Sum_probs=25.2

Q ss_pred             HHHHCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             11210454247899999870996589963
Q gi|254780200|r  116 WAMRYGKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus       116 ~amry~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      ++-++..||-++.+.=++..|+.+||+|+
T Consensus        93 ~vk~~~~~F~e~l~~~~kSSG~~~VIVLS  121 (262)
T KOG3112          93 WVKRHTAHFQEELVELLKSSGARRVIVLS  121 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             88753168999999999846984699972


No 162
>PRK09932 glycerate kinase II; Provisional
Probab=28.52  E-value=43  Score=14.34  Aligned_cols=63  Identities=14%  Similarity=0.097  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHCCC----CCCC------EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHH
Q ss_conf             999999999972667----5670------478622577765443026899998997699839997440542212558887
Q gi|254780200|r  230 CHKTARLLKEFLSWP----DDRF------KICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEI  299 (343)
Q Consensus       230 ~~~t~~~i~~~l~~~----~~~~------~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Ei  299 (343)
                      +..-.+.|.+.+++.    +.++      ++-.||.+|+.++       .+.+++++--+-|+++| |.+-+..|.+|+.
T Consensus       265 l~~G~d~v~~~~~l~~~i~~aDLVITGEG~~D~Qtl~GK~p~-------gVa~~A~~~~~Pviai~-G~~~~~~~~~~~~  336 (381)
T PRK09932        265 IKPGIEIVLNAVNLEQAVQGAALVITGEGRIDSQTAGGKAPL-------GVASVAKQFNVPVIGIA-GVLGDGVEVVHQY  336 (381)
T ss_pred             ECCHHHHHHHHHCHHHHHCCCCEEEECCCCCCCCCCCCCHHH-------HHHHHHHHCCCCEEEEE-CCCCCCHHHHHHC
T ss_conf             845699999875989884789999989987766688988599-------99999998499989996-2458887889864


Q ss_pred             H
Q ss_conf             5
Q gi|254780200|r  300 A  300 (343)
Q Consensus       300 d  300 (343)
                      +
T Consensus       337 G  337 (381)
T PRK09932        337 G  337 (381)
T ss_pred             C
T ss_conf             9


No 163
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=28.52  E-value=43  Score=14.34  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=22.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHH
Q ss_conf             404577759999999986522478430011210454247
Q gi|254780200|r   88 ESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVK  126 (343)
Q Consensus        88 ~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~  126 (343)
                      .+||...-..|+..+.+.|.+.....  +.--|+.|+..
T Consensus        23 d~~Lt~~G~~Qa~~l~~~l~~~~~~~--~~~i~sSpl~R   59 (155)
T smart00855       23 DSPLTELGRAQAEALGELLASLGRLR--FDVIYSSPLLR   59 (155)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCC--CCEEEECCCHH
T ss_conf             98839789999999999999736999--89899797589


No 164
>PTZ00110 helicase; Provisional
Probab=28.46  E-value=43  Score=14.33  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHCCC-CCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             775999999998652247-84300112104542478999998709965899631711100146899999999
Q gi|254780200|r   93 THTRDQATNLAKRLESIS-SIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQ  163 (343)
Q Consensus        93 ~~t~~qa~~L~~~L~~~~-~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~  163 (343)
                      .=|+++|..+.+.+...+ ...+..+.-||--.+.+-+.+| +.|++=||          +|-|-.++.+.+
T Consensus       262 aPTRELA~QI~~e~~~~~~~~~ir~~~i~GG~~~~~Q~~~L-~~G~dIvV----------ATPGRLiDlL~~  322 (602)
T PTZ00110        262 APTRELAEQIREQALQFGRSSKLKNSVAYGGVPKRFQTYAL-RRGVEILI----------ACPGRLIDFLES  322 (602)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH-CCCCCEEE----------ECCHHHHHHHHC
T ss_conf             38399999999999997154785499997996879999987-16999999----------792389999964


No 165
>KOG0488 consensus
Probab=28.43  E-value=11  Score=18.46  Aligned_cols=67  Identities=27%  Similarity=0.111  Sum_probs=38.1

Q ss_pred             EEEEECCCCHHHHHHCCCCHHHHHHH-HHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99983367502676279988899999-9999997266756704786225777654430268999989976998
Q gi|254780200|r  208 LLVSFHQMPVSYLLKGDPYGCHCHKT-ARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIK  279 (343)
Q Consensus       208 llfSaHglP~~~~~~gDpY~~q~~~t-~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k  279 (343)
                      -+||-|-|=.  +++-.-|+..+-.- =..+|+.||+.+.+..+-||+|  +.||=.= +....+.+.+.|.+
T Consensus       177 TaFT~~Ql~~--LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNR--RtKWKrq-~a~g~~~~~~~~~~  244 (309)
T KOG0488         177 TAFSDHQLFE--LEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNR--RTKWKRQ-TAEGGELLYQAGNS  244 (309)
T ss_pred             HHHHHHHHHH--HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHH-HHHHHCCCCCCCCC
T ss_conf             1212889999--9998877502567889999998299255688877603--6788777-88652111136666


No 166
>KOG0884 consensus
Probab=28.34  E-value=43  Score=14.32  Aligned_cols=15  Identities=40%  Similarity=0.246  Sum_probs=12.6

Q ss_pred             CHHHHCCHHHHHHHH
Q ss_conf             405422125588875
Q gi|254780200|r  286 PGFSSDCLETSYEIA  300 (343)
Q Consensus       286 ~gFvsD~lETl~Eid  300 (343)
                      .|=|.|.+|||.||+
T Consensus       118 fgkvidg~etldele  132 (161)
T KOG0884         118 FGKVIDGLETLDELE  132 (161)
T ss_pred             EEEECCCHHHHHHHH
T ss_conf             410002155477885


No 167
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839    This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=28.30  E-value=43  Score=14.32  Aligned_cols=128  Identities=13%  Similarity=0.117  Sum_probs=66.3

Q ss_pred             HHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCH-HHH------HCCCCCHHHHHHHHHH---CCCCEEEEE
Q ss_conf             99987077--88740457775999999998652247-84300-112------1045424789999987---099658996
Q gi|254780200|r   77 AYAKIWNT--AKNESILRTHTRDQATNLAKRLESIS-SIVVD-WAM------RYGKPSVKEIINNLRE---EGCDRLLIF  143 (343)
Q Consensus        77 ~Y~~Iw~~--~gg~SPL~~~t~~qa~~L~~~L~~~~-~~~V~-~am------ry~~P~i~~~l~~l~~---~g~~~ii~l  143 (343)
                      .|++=|+.  ..||=||..--.  +..|-++..+.+ +.-|+ -|+      --.-|++.=.|-++|.   ...++++..
T Consensus       125 fY~~SGGGvTlSGGEPl~Q~eF--~~~LL~~c~~~gihTAvET~gft~~~~~~~~~~~~DLfL~DiK~~D~~~H~~~tG~  202 (305)
T TIGR02494       125 FYRNSGGGVTLSGGEPLLQPEF--ALALLKACRERGIHTAVETSGFTPWETIEKVLPYVDLFLYDIKHLDDERHKEVTGV  202 (305)
T ss_pred             HHHHCCCEEEECCCCCCCCHHH--HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
T ss_conf             6651399067348711401589--99999999758994676055688889999888877699872641180120553389


Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCH
Q ss_conf             3171110014689999999999871-----7998642133455780068999999999997338998669998336750
Q gi|254780200|r  144 PLYPQYSAATTGTAQDKVFQELIHM-----RWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPV  217 (343)
Q Consensus       144 PLyPqyS~sTtgS~~~~~~~~l~~~-----~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~  217 (343)
                      .         -.-+++.+.+.+..-     ....++-+|+.|-|++.=|+|+++-+++.... +....+ |+.||++-.
T Consensus       203 ~---------N~~IL~NL~~L~~~~~~GG~~v~iR~PvIpG~Nds~~~i~a~~~f~~~~~~~-N~~~i~-LLPyH~lG~  270 (305)
T TIGR02494       203 D---------NELILENLEALLAAGKDGGKNVVIRIPVIPGFNDSEENIEAIAEFLRKLLPG-NVKEID-LLPYHRLGE  270 (305)
T ss_pred             C---------HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEE-ECCCHHHHH
T ss_conf             8---------3789999999997178899558998720489898989999999999985178-976567-448605567


No 168
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=28.27  E-value=43  Score=14.31  Aligned_cols=97  Identities=12%  Similarity=-0.010  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHH---
Q ss_conf             89999999999972667567047862257776544302689999899769983999744054221255888758999---
Q gi|254780200|r  228 CHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAK---  304 (343)
Q Consensus       228 ~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~---  304 (343)
                      ..|.+|++.|++.+|++-. ..-.+.=. .-+.|=+=...+..++.+++= +.- .-.|.|....=|++.|+.-...   
T Consensus       231 ~RA~eTAe~Ia~~lgl~v~-~d~~LrE~-dfG~WEG~t~~Ei~~~~Pe~~-~~W-~~dp~~~pPgGES~~~v~~Rv~~al  306 (375)
T PRK07238        231 QRAYDTAEAAAKALGLDVT-VDDDLIET-DFGAWEGLTFAEAAERDPELH-RRW-LADTSVAPPGGESFDDVARRVRRAR  306 (375)
T ss_pred             HHHHHHHHHHHHHCCCCCE-ECHHCCCC-CCCCCCCCCHHHHHHHCHHHH-HHH-HCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999985199927-87310137-888535881899987799999-987-6088999959968999999999999


Q ss_pred             -HHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             -9999759975898168987989999999
Q gi|254780200|r  305 -EIFVNGGGEKFTQVPCLNSSNLSIDLLE  332 (343)
Q Consensus       305 -e~~~e~Gg~~~~rvp~lN~~~~fi~~La  332 (343)
                       ++..++.|++...|    +|-.-|.+|.
T Consensus       307 ~~i~~~h~G~tVlVV----sHggvIR~ll  331 (375)
T PRK07238        307 DRIIAEYPGATVLVV----SHVTPIKTLL  331 (375)
T ss_pred             HHHHHHCCCCCEEEE----ECHHHHHHHH
T ss_conf             999987899939999----6859999999


No 169
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=28.18  E-value=43  Score=14.30  Aligned_cols=23  Identities=22%  Similarity=0.638  Sum_probs=17.4

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             45424789999987099658996
Q gi|254780200|r  121 GKPSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       121 ~~P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      +.|.++-+++.|++.|++++++.
T Consensus        31 gkPii~~~l~~L~~~Gv~eivi~   53 (358)
T COG1208          31 GKPLIEYVLEALAAAGVEEIVLV   53 (358)
T ss_pred             CEEHHHHHHHHHHHCCCCEEEEE
T ss_conf             86459999999998799789998


No 170
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=28.08  E-value=44  Score=14.29  Aligned_cols=17  Identities=18%  Similarity=0.438  Sum_probs=14.3

Q ss_pred             CEEEEEECCCCHHHHHH
Q ss_conf             66999833675026762
Q gi|254780200|r  206 EMLLVSFHQMPVSYLLK  222 (343)
Q Consensus       206 ~~llfSaHglP~~~~~~  222 (343)
                      -.++.|||||=.|.|++
T Consensus       235 rl~vISfHSLEDRiVK~  251 (309)
T PRK00050        235 RLSVISFHSLEDRIVKR  251 (309)
T ss_pred             EEEEEEECCHHHHHHHH
T ss_conf             39999843325789999


No 171
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.99  E-value=44  Score=14.28  Aligned_cols=215  Identities=13%  Similarity=0.163  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH-HHHHHCCCCC
Q ss_conf             599999999865224784300112104542478999998709965899631711100146899999999-9987179986
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQ-ELIHMRWSPS  173 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~-~l~~~~~~~~  173 (343)
                      +-.+..+|++     .++.|+.|+-+- ++++..++......+-.+..+.-...+.........+.-.. .-......-.
T Consensus        43 ~p~d~~~l~~-----Adliv~~G~~lE-~wl~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  116 (286)
T cd01019          43 RPSDARKLQE-----ADLVVWIGPDLE-AFLDKVLQGRKKGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEE  116 (286)
T ss_pred             CHHHHHHHHC-----CCEEEEECCCCH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999966-----999999699724-6899999747788837853355655433444345545555555565444556


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             42133455780068999999999997338998669998336750267627998889999999999972667567047862
Q gi|254780200|r  174 LRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ  253 (343)
Q Consensus       174 ~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQ  253 (343)
                      -..=+++|-+|.....+++.|.+.|.+.+-...          .-+-++..-|..++.+.-+.+.+.+.-..++..++|.
T Consensus       117 ~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~----------~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~v~~H  186 (286)
T cd01019         117 GGLDPHLWLSPENAAEVAQAVAEKLSALDPDNA----------ATYAANLEAFNARLAELDATIKERLAPVKTKPFFVFH  186 (286)
T ss_pred             CCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             899981634847799999999999988682209----------9999999999999999999999974455652289856


Q ss_pred             C-------CCC--------CCCCCCHHH---HHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             2-------577--------765443026---8999989976998399974405422125588875899999997599758
Q gi|254780200|r  254 S-------RFG--------RIKCLEPPT---DKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKF  315 (343)
Q Consensus       254 S-------r~G--------p~~WL~P~t---~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~  315 (343)
                      .       ++|        ..+=.+|+.   .+..+.+.+.|+ +++++-++|-..-.|++          +.+.|+. .
T Consensus       187 ~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v-~~If~e~~~~~k~a~~i----------a~e~g~~-v  254 (286)
T cd01019         187 DAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGA-TCVFAEPQFHPKIAETL----------AEGTGAK-V  254 (286)
T ss_pred             CCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHH----------HHHCCCC-E
T ss_conf             6368999866983867872246778999999999999998399-88998289893999999----------9971993-8


Q ss_pred             EEECCCCC-----CHHHHHHHHHHHHH
Q ss_conf             98168987-----98999999999999
Q gi|254780200|r  316 TQVPCLNS-----SNLSIDLLEKITRR  337 (343)
Q Consensus       316 ~rvp~lN~-----~~~fi~~La~lv~~  337 (343)
                      ..+..+..     .+.+++++...+..
T Consensus       255 ~~ld~l~~~~~~~~~~Y~~~m~~n~~~  281 (286)
T cd01019         255 GELDPLGGLIELGKNSYVNFLRNLADS  281 (286)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             996377677888740699999999999


No 172
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840   This is a family of mainly hypothetical proteins of unknown function. .
Probab=27.88  E-value=44  Score=14.27  Aligned_cols=143  Identities=16%  Similarity=0.204  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH------
Q ss_conf             88999999987489544117868889987666512574788999998707788740457775999999998652------
Q gi|254780200|r   34 FFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLE------  107 (343)
Q Consensus        34 ~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~------  107 (343)
                      +.+|-.++.+..+..||.+.-+.  +    .+|        .  ++.-+-..|-..|...+|+.----+.+.+-      
T Consensus       103 ~~~i~~~i~~~~~~qrv~~~~~~--~----~~~--------~--~~~pg~ragve~p~ren~rhgdvf~pR~~~Tpr~YA  166 (475)
T TIGR01125       103 VEEILNAIESLEPGQRVKDKLPF--K----SEI--------P--EEEPGMRAGVETPQRENTRHGDVFVPRIKLTPRHYA  166 (475)
T ss_pred             HHHHHHHHHHHCCCCCHHHHCCC--C----CCC--------C--CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEE
T ss_conf             89999999742265203553677--5----641--------1--247752012456431134556457402036877403


Q ss_pred             -----CCC----CCCCHHHHH---CCCCCHHHHHHH---HHHCCCCEEEEEE---------CCH---HHHHHHHHHHHHH
Q ss_conf             -----247----843001121---045424789999---9870996589963---------171---1100146899999
Q gi|254780200|r  108 -----SIS----SIVVDWAMR---YGKPSVKEIINN---LREEGCDRLLIFP---------LYP---QYSAATTGTAQDK  160 (343)
Q Consensus       108 -----~~~----~~~V~~amr---y~~P~i~~~l~~---l~~~g~~~ii~lP---------LyP---qyS~sTtgS~~~~  160 (343)
                           ++-    -|....-||   =++| |++++.+   |.++|+.+|+++.         ||-   .|....+.+.+.+
T Consensus       167 YlKvaEGC~~~CaFCiIP~~rG~~rSR~-ie~i~~Ea~~L~~~GvKEiiliaQDTt~YG~DL~~R~~~~~~e~v~~~L~~  245 (475)
T TIGR01125       167 YLKVAEGCNRRCAFCIIPSLRGKLRSRP-IEEILKEAKRLVDQGVKEIILIAQDTTAYGVDLYTRESEFDGEQVKSKLVE  245 (475)
T ss_pred             EEEECCCCCCCCCEECCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf             6870057789865213623367767768-888999999998439838999964034776411110552240145789999


Q ss_pred             HHHHHHHHCCC--CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999871799--8642133455780068999999
Q gi|254780200|r  161 VFQELIHMRWS--PSLRTVPPYYEDSDYISALAQS  193 (343)
Q Consensus       161 ~~~~l~~~~~~--~~~~~I~~~~~~p~yI~a~~~~  193 (343)
                      +.+.|.+....  .++.++=|+.-++.-|+++++.
T Consensus       246 Ll~~L~k~~G~~WiR~~YlYP~~~~~~vI~~m~~~  280 (475)
T TIGR01125       246 LLEELGKLGGIYWIRLLYLYPDELTDDVIDLMAEG  280 (475)
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCC
T ss_conf             99974005896227888760888866788998638


No 173
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins is predicted to  bind ATP. This domainhas  a strongly conserved motif SGGKD at the N terminus.
Probab=27.73  E-value=44  Score=14.25  Aligned_cols=127  Identities=14%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             HHHHHHCCCCEEEEEECCHHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99998709965899631711100146--8999999999987179986421334557800689999999999973389986
Q gi|254780200|r  129 INNLREEGCDRLLIFPLYPQYSAATT--GTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPE  206 (343)
Q Consensus       129 l~~l~~~g~~~ii~lPLyPqyS~sTt--gS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~  206 (343)
                      +-.+.++|.+-+.++.+.|+...+..  +-..+-+.......+ .| +..+..-.+...|.+.+.+.+++. .+...  +
T Consensus        16 l~~a~~~g~~v~~L~~~~~~~~~~~~~H~~~~~l~~~qAealg-iP-l~~~~~~~~~~~~~~~l~~~L~~~-k~~gi--~   90 (194)
T cd01994          16 LYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMG-IP-LIRIEISGEEEDEVEDLKELLRKL-KEEGV--D   90 (194)
T ss_pred             HHHHHHCCCEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHCC-CC-EEEEECCCCCCHHHHHHHHHHHHH-HHCCC--C
T ss_conf             9999986992599999963998805250557899999999859-96-699966898717999999999999-97599--5


Q ss_pred             EEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             699983367502676279988899999999999726675670478622577765443026899998997699839997
Q gi|254780200|r  207 MLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAII  284 (343)
Q Consensus       207 ~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~  284 (343)
                      .++|            ||-+......-.+.+.+++|+..  +        -|- |-. +..+.+.++.+.|.+.+++.
T Consensus        91 ~vv~------------GdI~s~~qr~~~e~~c~~lgl~~--~--------~PL-W~~-~~~~ll~e~i~~Gf~aiiv~  144 (194)
T cd01994          91 AVVF------------GAILSEYQRTRVERVCERLGLEP--L--------APL-WGR-DQEELLREMIEAGFKAIIIK  144 (194)
T ss_pred             EEEE------------CCCCCHHHHHHHHHHHHHCCCEE--E--------CHH-CCC-CHHHHHHHHHHCCCEEEEEE
T ss_conf             9999------------96332889999999999739888--7--------001-079-99999999998799099999


No 174
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=27.54  E-value=45  Score=14.23  Aligned_cols=35  Identities=14%  Similarity=0.016  Sum_probs=21.8

Q ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999975997589816898798999999999999
Q gi|254780200|r  303 AKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRR  337 (343)
Q Consensus       303 ~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~~  337 (343)
                      .+++....|......+-..|..|-..+-|.+.|++
T Consensus       340 ~~~i~~~~~~~~~~~i~k~~G~pf~~~ei~~~i~e  374 (375)
T PRK09627        340 LEEIERVMQRDDFHFLGKANGRPISPSEIIAKVKE  374 (375)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             99999973898751570069985799999999961


No 175
>TIGR03571 lucif_BA3436 luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81.
Probab=27.48  E-value=45  Score=14.22  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHH
Q ss_conf             026899998997699839997440542212558887
Q gi|254780200|r  264 PPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEI  299 (343)
Q Consensus       264 P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Ei  299 (343)
                      ..+.|.|+++.+.|+.+|++.....-.+..|+|+.+
T Consensus       255 ~~iie~l~~y~eaGv~~vil~~~~~~~~~~e~le~f  290 (298)
T TIGR03571       255 NALIELLDALREAGVNHVALNLRPSRRPAAEVLDEL  290 (298)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             999999999997699789973788999989999999


No 176
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.46  E-value=45  Score=14.22  Aligned_cols=190  Identities=16%  Similarity=0.227  Sum_probs=85.6

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCC-HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             79999717888999988999999987489-54411786888998766651257478899999870778874045777599
Q gi|254780200|r   19 IGVLLVNLGTPDGHDFFSLRRYLREFLLD-KRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRD   97 (343)
Q Consensus        19 ~gvLL~n~G~P~~~~~~~V~~yL~~fl~D-~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~   97 (343)
                      -=|-.+..|-|+   .+...++++.+..+ -++|++.-++--|+--|       +.++....+=-  .+|-|+  ..+..
T Consensus        18 a~i~yit~GdP~---~e~s~e~i~~L~~~GaD~iELGvPfSDPvADG-------P~Iq~A~~rAL--~~g~t~--~~~le   83 (265)
T COG0159          18 ALIPYVTAGDPD---LETSLEIIKTLVEAGADILELGVPFSDPVADG-------PTIQAAHLRAL--AAGVTL--EDTLE   83 (265)
T ss_pred             CEEEEEECCCCC---HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH--HCCCCH--HHHHH
T ss_conf             748889488999---89999999999867988899668888867668-------89999899999--779988--99999


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHCCCCCHH----HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999986522478430011210454247----89999987099658996317111001468999999999987179986
Q gi|254780200|r   98 QATNLAKRLESISSIVVDWAMRYGKPSVK----EIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPS  173 (343)
Q Consensus        98 qa~~L~~~L~~~~~~~V~~amry~~P~i~----~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~  173 (343)
                      +.+.+.+.   ..++++ .-|.|.+|--.    .=++++++.|++-+++.=|=|-.+        +.+.+...+.+.. .
T Consensus        84 l~~~~r~~---~~~~Pi-vlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~--------~~~~~~~~~~gi~-~  150 (265)
T COG0159          84 LVEEIRAK---GVKVPI-VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEES--------DELLKAAEKHGID-P  150 (265)
T ss_pred             HHHHHHHC---CCCCCE-EEEEECCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH--------HHHHHHHHHCCCC-E
T ss_conf             99999861---899988-998701188773599999999975998798578986677--------7899999976986-7


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             4213345578006899999999999733899866999833675026762799888999999999997266756704786
Q gi|254780200|r  174 LRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF  252 (343)
Q Consensus       174 ~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~f  252 (343)
                      +.++.+=..     +   ++++.-.+..  +....+.|--|.-=  ++  .++...+.+-.+.|.+.-+.   +.-+.|
T Consensus       151 I~lvaPtt~-----~---~rl~~i~~~a--~GFiY~vs~~GvTG--~~--~~~~~~~~~~v~~vr~~~~~---Pv~vGF  212 (265)
T COG0159         151 IFLVAPTTP-----D---ERLKKIAEAA--SGFIYYVSRMGVTG--AR--NPVSADVKELVKRVRKYTDV---PVLVGF  212 (265)
T ss_pred             EEEECCCCC-----H---HHHHHHHHHC--CCCEEEEECCCCCC--CC--CCCCHHHHHHHHHHHHHCCC---CEEEEC
T ss_conf             988699999-----8---9999999747--98589996666667--77--65304699999999974489---738744


No 177
>pfam12098 DUF3574 Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=27.32  E-value=27  Score=15.70  Aligned_cols=65  Identities=14%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             786225777654430268999989976998399974405422125588875899999997599758981689
Q gi|254780200|r  250 ICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCL  321 (343)
Q Consensus       250 l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~l  321 (343)
                      ++..-  |.+.|.++.+..    +..|..|-|.|+-+. ..|.-.-+.+|-..||+.|...+.+.....-|.
T Consensus        38 lTv~D--a~GqW~~~~~g~----~~rE~skvv~I~~~~-~~~~~~~i~~I~~aYK~~F~Q~SVl~~~~p~cv  102 (104)
T pfam12098        38 LTVFD--AYGQWRDRATGR----IVRENSKVVIIVHPD-TPAKRADIEAIREAYKQRFHQQSVLRVDQPVCV  102 (104)
T ss_pred             EEEEE--CCCEECCCCCCC----EEEECCEEEEEEECC-CHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEE
T ss_conf             07996--753571688885----020031799999089-863799999999999987667528998741672


No 178
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.06  E-value=45  Score=14.17  Aligned_cols=85  Identities=8%  Similarity=-0.013  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCHHH--H----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             4789999987099658996317111--0----014689999999999871799864213345578006899999999999
Q gi|254780200|r  125 VKEIINNLREEGCDRLLIFPLYPQY--S----AATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHF  198 (343)
Q Consensus       125 i~~~l~~l~~~g~~~ii~lPLyPqy--S----~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l  198 (343)
                      ++.+++--++-||..|.+++=-..-  +    ..|....++...+.+.+.+...-+.-|++ +++|+|.=.-++...+-+
T Consensus        87 i~~ai~yA~~lg~~~i~vmaG~~~~g~~~~~~~~~~venL~~aa~~a~~~gv~l~iEplN~-~d~pgy~l~~~~~a~~ii  165 (258)
T PRK09997         87 VAAAIRYARALGNKKINCLVGKTPSGFSSEQIHDTLVENLRYAANMLMKEDILLLIEPINH-FDIPGFHLTGTRQALKLI  165 (258)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCCCCCHHHHHHHH
T ss_conf             9999999998399968881135888889899999999999999999986598799986240-137888048899999999


Q ss_pred             HHCCCCCCEEEE
Q ss_conf             733899866999
Q gi|254780200|r  199 ESIQWTPEMLLV  210 (343)
Q Consensus       199 ~~~~~~~~~llf  210 (343)
                      +..+.++.+++|
T Consensus       166 ~~v~~pnv~l~~  177 (258)
T PRK09997        166 DDVGCCNLKIQY  177 (258)
T ss_pred             HHCCCCCEEEEE
T ss_conf             980998557640


No 179
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=26.71  E-value=46  Score=14.13  Aligned_cols=117  Identities=12%  Similarity=0.083  Sum_probs=53.4

Q ss_pred             CCCCCHHHHHHH---HHHHHHHHHHHCCCCCCCHHHHHCCCC--CHHHHHHHHHHCCCCEE-EEEECCHHHHHHHHHH--
Q ss_conf             887404577759---999999986522478430011210454--24789999987099658-9963171110014689--
Q gi|254780200|r   85 AKNESILRTHTR---DQATNLAKRLESISSIVVDWAMRYGKP--SVKEIINNLREEGCDRL-LIFPLYPQYSAATTGT--  156 (343)
Q Consensus        85 ~gg~SPL~~~t~---~qa~~L~~~L~~~~~~~V~~amry~~P--~i~~~l~~l~~~g~~~i-i~lPLyPqyS~sTtgS--  156 (343)
                      .|||.|-.--.+   .+.+.+++.++- ..-.+++.+=- +|  ..++-++.+++.|+++| +.+=-|-.---...|-  
T Consensus       103 ~GGGTPS~L~~~~l~~ll~~l~~~f~~-~~~~~EiTiE~-nP~~~~~~~l~~l~~~GvNRiSlGVQsf~~~~L~~lgR~h  180 (436)
T PRK08208        103 VGGGTPTLLNIAQLEKLFFSVFDVLGV-DLWNIPKSVET-SPTTTTAEKLALLNAFGVNRVSIGVQSFHDSELHALHRRQ  180 (436)
T ss_pred             ECCCHHHCCCHHHHHHHHHHHHHHCCC-CCCCEEEEEEE-CCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCC
T ss_conf             679432219999999999999985899-84671599986-6363609999999973987278741448989999846889


Q ss_pred             HHHHHHHHH---HHHCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             999999999---87179-98642133455780068999999999997338998669
Q gi|254780200|r  157 AQDKVFQEL---IHMRW-SPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEML  208 (343)
Q Consensus       157 ~~~~~~~~l---~~~~~-~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~l  208 (343)
                      ..+++.+++   .+.+. ..++..|-....  .=.+.|.+.|++.++-   .++||
T Consensus       181 ~~~~~~~ai~~~r~~gf~niniDLIyGlPg--Qt~~~~~~~l~~~l~l---~p~HI  231 (436)
T PRK08208        181 NAASVHQALELIRAAHFPSLNIDLIYGIPG--QTHASFMESLHQALVY---RPEEL  231 (436)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHCC---CCCEE
T ss_conf             999999999999981998575524436999--9999999999999827---98989


No 180
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244    This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=26.59  E-value=46  Score=14.11  Aligned_cols=43  Identities=19%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHH---CC-----CCCCCHHHHHCCCCCH-HHHHHHHHHCCCC
Q ss_conf             999999998652---24-----7843001121045424-7899999870996
Q gi|254780200|r   96 RDQATNLAKRLE---SI-----SSIVVDWAMRYGKPSV-KEIINNLREEGCD  138 (343)
Q Consensus        96 ~~qa~~L~~~L~---~~-----~~~~V~~amry~~P~i-~~~l~~l~~~g~~  138 (343)
                      ..+.++++++.+   +.     +..+|+++=+...=++ +++|+.||+.|.+
T Consensus        77 ~~l~~~Ik~~~pPyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL~  128 (331)
T TIGR00423        77 EELFRAIKQEFPPYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAGLD  128 (331)
T ss_pred             HHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf             9999999741789652476146868999999861897889999998885035


No 181
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg); InterPro: IPR004577 All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. The enzyme incises DNA at 8-oxoG residues, and excises 7,8-dihydro-8-oxoguanine from damaged DNA. It has beta-lyase activity that nicks DNA 3' to the lesion.; GO: 0008534 oxidized purine base lesion DNA N-glycosylase activity, 0006281 DNA repair, 0005634 nucleus.
Probab=26.54  E-value=30  Score=15.40  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             CCCCHH-HHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCH
Q ss_conf             799888-9999999999972667567047862257-7765443026899998997699839997440542212
Q gi|254780200|r  223 GDPYGC-HCHKTARLLKEFLSWPDDRFKICFQSRF-GRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCL  293 (343)
Q Consensus       223 gDpY~~-q~~~t~~~i~~~l~~~~~~~~l~fQSr~-Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~l  293 (343)
                      |=-|++ .+.+|++.|++..+..+-.-..+|--+. -....  -+..+.|-.|  .|+.--       |+||+
T Consensus       229 G~GYRA~Yi~~tar~l~ee~~~~nitsdta~LQ~ic~~~~Y--edar~~L~~l--~GVG~K-------VADCi  290 (379)
T TIGR00588       229 GLGYRARYIRETARALLEEQGGRNITSDTAWLQQICKDADY--EDAREALLEL--PGVGPK-------VADCI  290 (379)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCH--HHHHHHHHCC--CCCCCH-------HHHHH
T ss_conf             88754068999999988412664200235799986066886--7899997216--999704-------88888


No 182
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=26.24  E-value=47  Score=14.07  Aligned_cols=66  Identities=11%  Similarity=0.172  Sum_probs=37.8

Q ss_pred             HHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             210454247899999870996589963171110014689999--9999998717998642133455780068999999
Q gi|254780200|r  118 MRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQD--KVFQELIHMRWSPSLRTVPPYYEDSDYISALAQS  193 (343)
Q Consensus       118 mry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~--~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~  193 (343)
                      |.---+-.+.-.++++++|++++|++=|        -||++-  -+.+...+....|+++++++  .+|.+|.+..+.
T Consensus       436 ~~~~~~~~~~fa~~vr~~g~t~vvl~GM--------GGSSLaPEVia~tf~~~~g~P~L~VLDS--TDP~~V~a~~~~  503 (950)
T PRK09533        436 ELAKLADYEAFAAEVKAQGFTDAVVLGM--------GGSSLGPEVLAETFGQRDGFPKLHVLDS--TDPAQVRALEAA  503 (950)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECC--------CCCHHHHHHHHHHHCCCCCCCEEEEECC--CCHHHHHHHHHC
T ss_conf             9876899999999998669876999478--------7320409999987233579970799659--898999999854


No 183
>pfam05990 DUF900 Alpha/beta hydrolase of unknown function (DUF900). This family consists of several hypothetical proteins of unknown function mostly found in Rhizobium species. Members of this family have an alpha/beta hydrolase fold.
Probab=26.08  E-value=47  Score=14.05  Aligned_cols=24  Identities=13%  Similarity=0.422  Sum_probs=12.3

Q ss_pred             CCCCCHHHHHHHHHH-CCCCEEEEE
Q ss_conf             045424789999987-099658996
Q gi|254780200|r  120 YGKPSVKEIINNLRE-EGCDRLLIF  143 (343)
Q Consensus       120 y~~P~i~~~l~~l~~-~g~~~ii~l  143 (343)
                      +..|..++.|..+.+ .|.++|.++
T Consensus        75 ~s~~~l~~~L~~l~~~~~~~~I~il   99 (230)
T pfam05990        75 YSRDALERLLRYLATTPPVKRIHLI   99 (230)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9999999999999866698748999


No 184
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=26.04  E-value=47  Score=14.05  Aligned_cols=26  Identities=12%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             HHHHHHHHCCCCCCEEEEEECCCCHH
Q ss_conf             99999973389986699983367502
Q gi|254780200|r  193 SIREHFESIQWTPEMLLVSFHQMPVS  218 (343)
Q Consensus       193 ~I~~~l~~~~~~~~~llfSaHglP~~  218 (343)
                      .+.+.+.+...+.-.+|||.|.+++-
T Consensus       171 ~~~dfi~q~k~egr~viFSSH~m~Ev  196 (245)
T COG4555         171 KFHDFIKQLKNEGRAVIFSSHIMQEV  196 (245)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf             99999998525794899961317999


No 185
>KOG3182 consensus
Probab=26.01  E-value=47  Score=14.04  Aligned_cols=12  Identities=17%  Similarity=0.075  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999997
Q gi|254780200|r  229 HCHKTARLLKEF  240 (343)
Q Consensus       229 q~~~t~~~i~~~  240 (343)
                      .++++++.|+..
T Consensus       134 ple~iArqI~t~  145 (212)
T KOG3182         134 PLEEIARQIVTA  145 (212)
T ss_pred             CHHHHHHHHHHC
T ss_conf             689999999863


No 186
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=25.81  E-value=48  Score=14.02  Aligned_cols=17  Identities=18%  Similarity=0.401  Sum_probs=14.5

Q ss_pred             CEEEEEECCCCHHHHHH
Q ss_conf             66999833675026762
Q gi|254780200|r  206 EMLLVSFHQMPVSYLLK  222 (343)
Q Consensus       206 ~~llfSaHglP~~~~~~  222 (343)
                      -.++.|||||=.|.|++
T Consensus       236 rl~VISFHSLEDRiVK~  252 (310)
T pfam01795       236 RLSVISFHSLEDRIVKN  252 (310)
T ss_pred             EEEEEEECCHHHHHHHH
T ss_conf             89999854346799999


No 187
>PRK00347 sugar fermentation stimulation protein A; Reviewed
Probab=25.73  E-value=48  Score=14.01  Aligned_cols=23  Identities=13%  Similarity=0.356  Sum_probs=10.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             77765443026899998997699
Q gi|254780200|r  256 FGRIKCLEPPTDKTVEKLAHDGI  278 (343)
Q Consensus       256 ~Gp~~WL~P~t~~~l~~L~~~G~  278 (343)
                      |.|..=+-|...+++.+..+.|+
T Consensus       187 f~p~~~~Dp~fa~~l~~A~~~GV  209 (234)
T PRK00347        187 FAPADEIDPEYAELLREAVAAGV  209 (234)
T ss_pred             EEECHHCCHHHHHHHHHHHHCCC
T ss_conf             80864439999999999998898


No 188
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related    enzyme [Amino acid transport and metabolism]
Probab=25.70  E-value=48  Score=14.00  Aligned_cols=14  Identities=21%  Similarity=0.365  Sum_probs=9.3

Q ss_pred             EEEEEECCCCCCCC
Q ss_conf             79999717888999
Q gi|254780200|r   19 IGVLLVNLGTPDGH   32 (343)
Q Consensus        19 ~gvLL~n~G~P~~~   32 (343)
                      +-.|.+..|+|...
T Consensus         9 ~p~LflshgsP~~~   22 (268)
T COG3384           9 MPALFLSHGSPMLA   22 (268)
T ss_pred             CCCEEECCCCCCCC
T ss_conf             60115628981223


No 189
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; InterPro: IPR011920   Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units.    This entry represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of Escherichia coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis .; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=25.64  E-value=48  Score=14.00  Aligned_cols=11  Identities=36%  Similarity=0.655  Sum_probs=7.2

Q ss_pred             EEEEEECCCCH
Q ss_conf             69998336750
Q gi|254780200|r  207 MLLVSFHQMPV  217 (343)
Q Consensus       207 ~llfSaHglP~  217 (343)
                      .||++-|.|+.
T Consensus       124 VlLv~~HfltL  134 (308)
T TIGR02207       124 VLLVGVHFLTL  134 (308)
T ss_pred             EEEEEHHCCCH
T ss_conf             89971300455


No 190
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC; InterPro: IPR001757   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2.    This entry represents the several classes of P-type ATPases, including those that transport K^+ (3.6.3.12 from EC), Mg^2+ (3.6.3.2 from EC), Cd^2+ (3.6.3.3 from EC), Cu ^2+ (3.6.3.4 from EC), Zn^2+ (3.6.3.5 from EC), Na^+ (3.6.3.7 from EC), Ca^2+ (3.6.3.8 from EC), Na^+/K^+ (3.6.3.9 from EC), and H^+/K^+ (3.6.3.10 from EC). These P-ATPases are found in both prokaryotes and eukaryotes.   More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0005524 ATP binding, 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006810 transport, 0016020 membrane.
Probab=25.63  E-value=48  Score=14.00  Aligned_cols=114  Identities=24%  Similarity=0.323  Sum_probs=60.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCHHHHHHCCC-C-HHHHHHHHHHHHHHHCCCCCCCEEEEECC-
Q ss_conf             557800689999999999973389986-6999833675026762799-8-88999999999997266756704786225-
Q gi|254780200|r  180 YYEDSDYISALAQSIREHFESIQWTPE-MLLVSFHQMPVSYLLKGDP-Y-GCHCHKTARLLKEFLSWPDDRFKICFQSR-  255 (343)
Q Consensus       180 ~~~~p~yI~a~~~~I~~~l~~~~~~~~-~llfSaHglP~~~~~~gDp-Y-~~q~~~t~~~i~~~l~~~~~~~~l~fQSr-  255 (343)
                      +....--=.|+.+..++.++..+++.+ +-+=.-+.-|....-||-| - ...|..+-+.+.+. +-. .--.+++.+| 
T Consensus       238 ~~~~~P~e~Alv~~a~~~~~~~~F~s~~krm~~i~~~~~~~~~KGa~~~~~~~~~~~~~~~~~~-~~~-G~R~l~~a~~~  315 (478)
T TIGR01494       238 YQAGSPDEKALVKFAKKILDVLPFTSERKRMSVIVRDPDGKYVKGAPEVILERCSDTEEHLEEL-ASE-GLRTLAVAYKE  315 (478)
T ss_pred             CCCCCHHHHHHHHHHHHHCCEECCCCCEEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHH-HHC-CCEEEEEEEEC
T ss_conf             3247745799998654431122035540478999985896587183467899888899998876-317-87089999806


Q ss_pred             --CC---CCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHH
Q ss_conf             --77---7654430268999989976998399974405422125588875
Q gi|254780200|r  256 --FG---RIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA  300 (343)
Q Consensus       256 --~G---p~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eid  300 (343)
                        .|   =.-=|+|++.+++++|.+.|+| |.++    +=||.||=..|.
T Consensus       316 ~~lG~~~~~D~lr~~~~~~i~~L~~agi~-v~ml----TGD~~~tA~~ia  360 (478)
T TIGR01494       316 ELLGLTAIEDPLREDVKETIEELKRAGIK-VWML----TGDNVETAIAIA  360 (478)
T ss_pred             EEEEEEEEECCCCCCHHHHHHHHHHCCCE-EEEE----ECCCHHHHHHHH
T ss_conf             07899997345777268999999865998-9999----579879999999


No 191
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; InterPro: IPR011921   Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A . The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS . The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids . These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units.    This family consists of MsbB in Escherichia coli and closely related proteins in other species. MsbB is homologous to HtrB (IPR011920 from INTERPRO) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=25.59  E-value=48  Score=13.99  Aligned_cols=18  Identities=33%  Similarity=0.591  Sum_probs=11.9

Q ss_pred             HHHHHHHHCCCCEEEEEE
Q ss_conf             899999870996589963
Q gi|254780200|r  127 EIINNLREEGCDRLLIFP  144 (343)
Q Consensus       127 ~~l~~l~~~g~~~ii~lP  144 (343)
                      |-|++++++|-.=|+++|
T Consensus       114 E~~~~~~~~G~~vIllvP  131 (307)
T TIGR02208       114 EHIEEAKAEGKKVILLVP  131 (307)
T ss_pred             HHHHHHHHCCCCEEEEEC
T ss_conf             127999962896399717


No 192
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=25.37  E-value=49  Score=13.96  Aligned_cols=16  Identities=0%  Similarity=0.152  Sum_probs=8.1

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             8798999999999999
Q gi|254780200|r  322 NSSNLSIDLLEKITRR  337 (343)
Q Consensus       322 N~~~~fi~~La~lv~~  337 (343)
                      |.+..-++.+.+++++
T Consensus       365 gas~raA~~Il~~l~~  380 (382)
T PRK00025        365 GAAERAAQAVLELLKQ  380 (382)
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9999999999999973


No 193
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=25.04  E-value=49  Score=13.92  Aligned_cols=53  Identities=23%  Similarity=0.343  Sum_probs=29.4

Q ss_pred             HHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9989976998399974405422125588875899999997599758981689879899999999999
Q gi|254780200|r  270 VEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITR  336 (343)
Q Consensus       270 l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~  336 (343)
                      -++++++|+.-+   .++|-.+...     +-.++++|...|| +|.++|.+|...     |+++|+
T Consensus       125 a~~~~~~gi~~~---vId~~~~~~~-----~~~~~~LA~~~~g-~Y~~id~l~~~~-----i~~~v~  177 (178)
T cd01451         125 ARKLRARGISAL---VIDTEGRPVR-----RGLAKDLARALGG-QYVRLPDLSADA-----IASAVR  177 (178)
T ss_pred             HHHHHHCCCCEE---EEECCCCCCC-----HHHHHHHHHHCCC-CEEECCCCCHHH-----HHHHHC
T ss_conf             999986699789---9979999767-----4899999994299-699899799889-----999872


No 194
>pfam06821 DUF1234 Alpha/Beta hydrolase family of unknown function (DUF1234). The Crystal Structure Of The Yden Gene Product from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins.
Probab=24.94  E-value=50  Score=13.91  Aligned_cols=34  Identities=3%  Similarity=0.092  Sum_probs=16.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH
Q ss_conf             57800689999999999973389986699983367502
Q gi|254780200|r  181 YEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVS  218 (343)
Q Consensus       181 ~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~  218 (343)
                      +++|. .+.|.+.+++.+...+   ...++.+||+-.-
T Consensus        34 ~~~P~-~~~W~~~L~~~l~~~d---~~~ilVaHSLGc~   67 (171)
T pfam06821        34 WLQPV-LDDWVAALSAAVAAAP---GPVVLVAHSLGCL   67 (171)
T ss_pred             CCCCC-HHHHHHHHHHHHHHCC---CCEEEEEECHHHH
T ss_conf             89989-9999999999997368---9859997357899


No 195
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=24.91  E-value=45  Score=14.19  Aligned_cols=43  Identities=14%  Similarity=0.241  Sum_probs=17.6

Q ss_pred             CCCHHHHHHHHH----HHHHHHHHHCCCCCCCHHHHH-CCCCCHHHHHHH
Q ss_conf             740457775999----999998652247843001121-045424789999
Q gi|254780200|r   87 NESILRTHTRDQ----ATNLAKRLESISSIVVDWAMR-YGKPSVKEIINN  131 (343)
Q Consensus        87 g~SPL~~~t~~q----a~~L~~~L~~~~~~~V~~amr-y~~P~i~~~l~~  131 (343)
                      |++|+..+....    .+.+++.|+  ..+.+++||+ +..|.+-..+.+
T Consensus        23 g~TPlyVyd~~~l~~~~~~l~~a~p--~~~~i~YAvKaN~~~~il~~l~~   70 (398)
T TIGR03099        23 GGTPFYAYDRGLVSERVAALRKALP--EELAIHYAVKANPMPALLAHMAP   70 (398)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHCC--CCCEEEEEEECCCCHHHHHHHHH
T ss_conf             8999899669999999999998579--99849999602899999999998


No 196
>pfam12309 KBP_C KIF-1 binding protein C terminal. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=24.83  E-value=50  Score=13.90  Aligned_cols=19  Identities=11%  Similarity=0.260  Sum_probs=8.0

Q ss_pred             CCCCCCCCHHHHHHHHHHH
Q ss_conf             3345578006899999999
Q gi|254780200|r  177 VPPYYEDSDYISALAQSIR  195 (343)
Q Consensus       177 I~~~~~~p~yI~a~~~~I~  195 (343)
                      -..||.-.+|..-.++.++
T Consensus       152 Ak~yy~ldg~vTdhi~I~q  170 (365)
T pfam12309       152 AKEYYTLDGHVTDHIEILQ  170 (365)
T ss_pred             HHHHHHCCCHHHHHHHHHH
T ss_conf             9889300342889999999


No 197
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=24.82  E-value=50  Score=13.89  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=12.9

Q ss_pred             CHHHHHCCC-CCHHHHHHHHHHCCCCEEEEE
Q ss_conf             001121045-424789999987099658996
Q gi|254780200|r  114 VDWAMRYGK-PSVKEIINNLREEGCDRLLIF  143 (343)
Q Consensus       114 V~~amry~~-P~i~~~l~~l~~~g~~~ii~l  143 (343)
                      +..|.-+-+ ++..+++.++.+.|++-++.+
T Consensus        63 idiaii~VP~~~a~~~~~~~v~~GIk~i~nf   93 (96)
T pfam02629        63 VDVAVITVPAPFAQEAIDELVDAGIKGIVNI   93 (96)
T ss_pred             CCEEEEEECHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8789999478998999999998699899994


No 198
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=24.78  E-value=50  Score=13.89  Aligned_cols=24  Identities=17%  Similarity=0.119  Sum_probs=11.9

Q ss_pred             HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99997599758981689879899999999999
Q gi|254780200|r  305 EIFVNGGGEKFTQVPCLNSSNLSIDLLEKITR  336 (343)
Q Consensus       305 e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~  336 (343)
                      +...++|. .|.+.       +.=++|++++.
T Consensus       272 ~kl~~aGF-~F~y~-------dl~~AL~~il~  295 (297)
T COG1090         272 KKLEAAGF-QFQYP-------DLEEALADILK  295 (297)
T ss_pred             HHHHHCCC-EEECC-------CHHHHHHHHHH
T ss_conf             99987798-16657-------79999999972


No 199
>PRK10302 hypothetical protein; Provisional
Probab=24.69  E-value=50  Score=13.88  Aligned_cols=79  Identities=13%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHH-HHHCCCCEEEEEECCHHHHH-HHHHHHHHHHHHHHHH-------HCCCCCCCCC--CCCCCCCHHHH
Q ss_conf             045424789999-98709965899631711100-1468999999999987-------1799864213--34557800689
Q gi|254780200|r  120 YGKPSVKEIINN-LREEGCDRLLIFPLYPQYSA-ATTGTAQDKVFQELIH-------MRWSPSLRTV--PPYYEDSDYIS  188 (343)
Q Consensus       120 y~~P~i~~~l~~-l~~~g~~~ii~lPLyPqyS~-sTtgS~~~~~~~~l~~-------~~~~~~~~~I--~~~~~~p~yI~  188 (343)
                      |.++..+.++.+ |.+.|+++|+.= --|-||. .++.. ..+..+.-.+       ....+-+|+|  ++..++..|++
T Consensus       137 F~k~~~e~~L~~lL~~~~v~rVi~D-sr~l~~~~~~~~~-~~daq~kKP~vPvh~~~t~~~p~VRfiG~~~~~~n~~~l~  214 (272)
T PRK10302        137 FAKGEEEQALNRGLHQRGVNRVILD-SRPVHAARPHSEA-VRDAQRKKPKVPVHAVVTATNPLVRFIGSDDMAQNRELFA  214 (272)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCCHH-HHHHHHCCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             0770778999999997298757603-4233468999788-9999864999861443168975799817984223469999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999973
Q gi|254780200|r  189 ALAQSIREHFES  200 (343)
Q Consensus       189 a~~~~I~~~l~~  200 (343)
                      .|+++|..=+++
T Consensus       215 ~W~~kl~~W~~~  226 (272)
T PRK10302        215 VWLQKLPQWHQT  226 (272)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999976


No 200
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.60  E-value=50  Score=13.87  Aligned_cols=218  Identities=17%  Similarity=0.190  Sum_probs=102.9

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH-HHHCCCCCCCHHHHHH
Q ss_conf             6799997178889999889999999874-8954411786888998766651257478899999-8707788740457775
Q gi|254780200|r   18 KIGVLLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHAYA-KIWNTAKNESILRTHT   95 (343)
Q Consensus        18 K~gvLL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~-~Iw~~~gg~SPL~~~t   95 (343)
                      |-=|-.+..|=|+-.   .-.+.+..+- +.-++|++.-++--|+.-|       +-+++.++ .+    .+|--+.. .
T Consensus         9 ~ali~y~taG~P~~e---~~~~~~~~l~~~Gad~iEiGiPfSDP~aDG-------pvIq~a~~~AL----~~G~~~~~-~   73 (256)
T PRK13111          9 GALIPYITAGDPDLE---TSLEILKALVEAGADIIELGIPFSDPVADG-------PVIQRASLRAL----AAGVTLAD-V   73 (256)
T ss_pred             CEEEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHH-H
T ss_conf             668988707089989---999999999965999999788878876657-------99999999999----77996999-9


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999865224784300112104542----47899999870996589963171110014689999999999871799
Q gi|254780200|r   96 RDQATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWS  171 (343)
Q Consensus        96 ~~qa~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~  171 (343)
                      ..+.+.++++    .+.++ +-|.|++|.    +++-++++++.|++-+++ |=.|--       -.+++.+++++.+..
T Consensus        74 f~~~~~~r~~----~~~pi-vlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~e-------E~~~~~~~~~~~gi~  140 (256)
T PRK13111         74 LELLREIRAK----PTIPI-VLMTYYNPIFQYGVEAFAADAAEAGVDGLII-PDLPPE-------EAEEFRAAAKKHGID  140 (256)
T ss_pred             HHHHHHHHCC----CCCCE-EEEEECCHHHHHCHHHHHHHHHHCCCCEEEE-CCCCHH-------HHHHHHHHHHHCCCE
T ss_conf             9999998606----89988-9985030898709999999999759977981-699978-------889999999975980


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             86421334557800689999999999973389986699983367502676279988899999999999726675670478
Q gi|254780200|r  172 PSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKIC  251 (343)
Q Consensus       172 ~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~  251 (343)
                       .+.+|.+=..        .++|++-.+...+  ...+-|--|+-=   .+ ..-.....+..+.|.+.-++   +..++
T Consensus       141 -~I~lvaPtt~--------~~Ri~~i~~~s~g--fiY~vs~~GvTG---~~-~~~~~~~~~~i~~ik~~t~~---Pi~vG  202 (256)
T PRK13111        141 -LIFLVAPTTT--------DERLKKIASHASG--FVYYVSRAGVTG---AR-SADAADVADLLARLKAHTDL---PVAVG  202 (256)
T ss_pred             -EEEEECCCCC--------HHHHHHHHHHCCC--EEEEEECCCCCC---CC-CCCHHHHHHHHHHHHHCCCC---CEEEE
T ss_conf             -8999699998--------8999999962698--599985677678---87-66628899999999870689---75885


Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHH
Q ss_conf             6225777654430268999989976998399974405422125
Q gi|254780200|r  252 FQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLE  294 (343)
Q Consensus       252 fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lE  294 (343)
                      |    |=      ++.+.++.+.+ |..-| |+= |=+.+++|
T Consensus       203 F----GI------s~~e~v~~~~~-~aDGv-IVG-Saiv~~i~  232 (256)
T PRK13111        203 F----GI------STPEQAAAIAE-GADGV-IVG-SALVKIIE  232 (256)
T ss_pred             C----CC------CCHHHHHHHHC-CCCEE-EEC-HHHHHHHH
T ss_conf             2----88------99999999974-59999-986-89999998


No 201
>KOG2599 consensus
Probab=24.53  E-value=50  Score=13.86  Aligned_cols=175  Identities=17%  Similarity=0.190  Sum_probs=99.1

Q ss_pred             CHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC
Q ss_conf             71110014-68999999999987179986421334557800689999999999973389986699983367502676279
Q gi|254780200|r  146 YPQYSAAT-TGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGD  224 (343)
Q Consensus       146 yPqyS~sT-tgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gD  224 (343)
                      ||++-... ...-+.++.+.+.......=-.+...|-.+..|++.+++-+++. .+.+ +  .+++..-  |+ +-++|-
T Consensus        54 Y~~~kG~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~l-k~~n-p--~~~wv~D--PV-mGDnG~  126 (308)
T KOG2599          54 YAHVKGQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKL-KKKN-P--NLTWVCD--PV-MGDNGR  126 (308)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC-C--CEEEEEC--CC-CCCCCC
T ss_conf             74111631689999999998764366332245530568826999999999999-8429-9--8499967--63-467851


Q ss_pred             CC-HHHHHHHHHHHHHHH--CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC---HHHHCCHHHHHH
Q ss_conf             98-889999999999972--667567047862257776544302689999899769983999744---054221255888
Q gi|254780200|r  225 PY-GCHCHKTARLLKEFL--SWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITP---GFSSDCLETSYE  298 (343)
Q Consensus       225 pY-~~q~~~t~~~i~~~l--~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~---gFvsD~lETl~E  298 (343)
                      -| ..+|....+.+.-.|  -+.+|+|++---+  |..==.+-+...+++.|.+.|+++|+|-+.   .|...   ||+=
T Consensus       127 lYV~eelipvYr~~i~~ladiiTPNqFE~EiLt--g~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~---~l~c  201 (308)
T KOG2599         127 LYVPEELIPVYRDLIIPLADIITPNQFEAEILT--GMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGE---TLRC  201 (308)
T ss_pred             EECCHHHHHHHHHHHCCHHHHCCCCCHHHHHHC--CCEECCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC---EEEE
T ss_conf             744587779999863025551077611111432--87424499999999999974898799974430788885---7999


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCC-----CCCHHHHHHHHHHHHHH
Q ss_conf             75899999997599758981689-----87989999999999998
Q gi|254780200|r  299 IAHEAKEIFVNGGGEKFTQVPCL-----NSSNLSIDLLEKITRRE  338 (343)
Q Consensus       299 idie~~e~~~e~Gg~~~~rvp~l-----N~~~~fi~~La~lv~~~  338 (343)
                      ++-....      -.-+..+|-+     ++-+.|.++|.+.+.+.
T Consensus       202 ~gs~~~~------~~f~~~ipki~~~FtGTGDLfsaLLla~~~~~  240 (308)
T KOG2599         202 IGSSCGS------ERFRYLIPKIDGVFTGTGDLFSALLLAWLHES  240 (308)
T ss_pred             EEECCCC------CEEEEEECCCCEEEECCCHHHHHHHHHHHHCC
T ss_conf             9861688------25899922555289605189999999997427


No 202
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=24.26  E-value=51  Score=13.82  Aligned_cols=25  Identities=36%  Similarity=0.664  Sum_probs=19.7

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0454247899999870996589963
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      .+.|-++-+++.+++.|+++++++.
T Consensus        27 ~gkpli~~~i~~l~~~gi~~i~iv~   51 (229)
T cd02523          27 NGKPLLERQIETLKEAGIDDIVIVT   51 (229)
T ss_pred             CCEEHHHHHHHHHHHCCCCCCEEEC
T ss_conf             9879999999999984998536655


No 203
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=24.22  E-value=51  Score=13.82  Aligned_cols=29  Identities=24%  Similarity=0.249  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf             99999999733899866999833675026
Q gi|254780200|r  191 AQSIREHFESIQWTPEMLLVSFHQMPVSY  219 (343)
Q Consensus       191 ~~~I~~~l~~~~~~~~~llfSaHglP~~~  219 (343)
                      .+.+.+.|++++.+.+.-|-|||=.|+++
T Consensus        14 m~~a~~~L~~fgi~~e~~V~SAHRTP~~~   42 (159)
T TIGR01162        14 MKKAAEILEEFGIPYELRVVSAHRTPELM   42 (159)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf             99999999855996678986067780889


No 204
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.22  E-value=51  Score=13.82  Aligned_cols=186  Identities=17%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             997178889999889999999874-8954411786888998766651257478899999870778874045777599999
Q gi|254780200|r   22 LLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQAT  100 (343)
Q Consensus        22 LL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~  100 (343)
                      --+..|=|+-.   .-.+++..+- +.-++|++.-++--|+.-|       +-+++.+++--   .+|.-+... ..+.+
T Consensus         4 ~y~taG~P~~~---~~~~~~~~l~~~G~d~iEiGiPfsDP~aDG-------pvIq~A~~~aL---~~g~~~~~~-~~~~~   69 (242)
T cd04724           4 PYITAGDPDLE---TTLEILKALVEAGADIIELGIPFSDPVADG-------PVIQAASERAL---ANGVTLKDV-LELVK   69 (242)
T ss_pred             EEEECCCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH---HCCCCHHHH-HHHHH
T ss_conf             78737789979---999999999976999999789988877658-------99999999999---769949999-99999


Q ss_pred             HHHHHHHCCCCCCCHHHHHCCCCCH----HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9998652247843001121045424----789999987099658996317111001468999999999987179986421
Q gi|254780200|r  101 NLAKRLESISSIVVDWAMRYGKPSV----KEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRT  176 (343)
Q Consensus       101 ~L~~~L~~~~~~~V~~amry~~P~i----~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~  176 (343)
                      ++++.    .+.++ +-|.|++|..    ++-++++++.|++-+++ |=.|-       .-.+.+.+.+.+.+.. .+.+
T Consensus        70 ~~r~~----~~~pi-vlM~Y~N~i~~~G~e~F~~~~~~~Gv~Gvii-pDLP~-------ee~~~~~~~~~~~~i~-~I~l  135 (242)
T cd04724          70 EIRKK----NTIPI-VLMGYYNPILQYGLERFLRDAKEAGVDGLII-PDLPP-------EEAEEFREAAKEYGLD-LIFL  135 (242)
T ss_pred             HHHHC----CCCCE-EEEEECHHHHHHCHHHHHHHHHHCCCCEEEE-CCCCH-------HHHHHHHHHHHHCCCE-EEEE
T ss_conf             98734----79888-9998445766528999999999759975870-69995-------7846899999865983-8899


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             3345578006899999999999733899866999833675026762799888999999999997266756704786
Q gi|254780200|r  177 VPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF  252 (343)
Q Consensus       177 I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~f  252 (343)
                      |.+=.        -.++|++-.+...  ....+.|.-|+-=.  + . +-.....+..+.|.+..+.   +..++|
T Consensus       136 vsPtt--------~~~ri~~i~~~s~--gfiY~vs~~GvTG~--~-~-~~~~~~~~~i~~ik~~t~~---Pv~vGF  194 (242)
T cd04724         136 VAPTT--------PDERIKKIAELAS--GFIYYVSRTGVTGA--R-T-ELPDDLKELIKRIRKYTDL---PIAVGF  194 (242)
T ss_pred             ECCCC--------CHHHHHHHHHHCC--CEEEEEECCCCCCC--C-C-CCHHHHHHHHHHHHHHCCC---CEEEEC
T ss_conf             68988--------7899999997479--84999857777787--7-5-5649999999999871689---748743


No 205
>PRK10799 putative hydrolase-oxidase; Provisional
Probab=23.80  E-value=52  Score=13.76  Aligned_cols=41  Identities=12%  Similarity=0.084  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             875899999997599758981689879899999999999984
Q gi|254780200|r  298 EIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRREL  339 (343)
Q Consensus       298 Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La~lv~~~l  339 (343)
                      |+.......+.+.| ..+.-+-=-++.--++++|++.+++++
T Consensus       194 d~k~h~~~~A~e~g-l~lid~GHy~tE~~gv~~L~~~L~~~f  234 (247)
T PRK10799        194 EVSEQTIHSAREQG-LHFYAAGHHATERGGIRALSEWLNENT  234 (247)
T ss_pred             CCCHHHHHHHHHCC-CEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf             85538899999779-969975835888999999999999986


No 206
>PRK13115 consensus
Probab=23.63  E-value=52  Score=13.74  Aligned_cols=214  Identities=14%  Similarity=0.124  Sum_probs=100.1

Q ss_pred             CCEEE-EEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH-HHHHCCCCCCCHHHH
Q ss_conf             86799-997178889999889999999874-895441178688899876665125747889999-987077887404577
Q gi|254780200|r   17 GKIGV-LLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHAY-AKIWNTAKNESILRT   93 (343)
Q Consensus        17 ~K~gv-LL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~Y-~~Iw~~~gg~SPL~~   93 (343)
                      +|.++ -.+..|-|+-   +.-.+.+..+- +.-++|++.-++--|+--|       +-+++.. +.+    .+|.-+..
T Consensus        22 ~k~alI~yitaG~P~~---e~t~~~i~~l~~~GaDiiElGiPFSDP~ADG-------PvIQ~A~~rAL----~~G~~~~~   87 (269)
T PRK13115         22 GRAALIGYLPAGFPDV---DTSIAAMTALVESGCDIVEVGLPYSDPVMDG-------PVIQAATEAAL----RGGVRVRD   87 (269)
T ss_pred             CCCEEEEEECCCCCCH---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHH
T ss_conf             9944887852738998---9999999999966999999799988856668-------99999999999----77995999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC----HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             7599999999865224784300112104542----478999998709965899631711100146899999999998717
Q gi|254780200|r   94 HTRDQATNLAKRLESISSIVVDWAMRYGKPS----VKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR  169 (343)
Q Consensus        94 ~t~~qa~~L~~~L~~~~~~~V~~amry~~P~----i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~  169 (343)
                      .-+ +.+.+    .+ .+.++. -|.|++|.    +++-++++++.|++-+++ |=.|.-       -.+.+.+.+.+.+
T Consensus        88 ~f~-~v~~~----~~-~~~Piv-lM~Y~N~i~~yG~e~F~~~~~~~GvdGvIi-pDLP~e-------E~~~~~~~~~~~g  152 (269)
T PRK13115         88 VFR-AVEAI----SA-AGGRAL-VMTYWNPVLRYGVDRFARDLAAAGGAGLIT-PDLIPD-------EAGEWLAASERHG  152 (269)
T ss_pred             HHH-HHHHH----CC-CCCCEE-EHHHHHHHHHHCHHHHHHHHHHCCCCEEEC-CCCCHH-------HHHHHHHHHHHCC
T ss_conf             999-99984----15-799888-547548998736999999999739980764-789978-------9999999998658


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             99864213345578006899999999999733899866999833675026762799888999999999997266756704
Q gi|254780200|r  170 WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFK  249 (343)
Q Consensus       170 ~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~  249 (343)
                      .. .+.+|.+=..        .++|+.-.+...+  .....|.-|+-=  . + ..-.....+..+.|.+...+   +..
T Consensus       153 i~-~I~LvaPtt~--------~eRi~~i~~~a~G--FIY~Vs~~GvTG--~-~-~~~~~~~~~~i~~ik~~t~~---Pv~  214 (269)
T PRK13115        153 LD-RIFLVAPSST--------PERLAETVEASRG--FVYAASTMGVTG--A-R-DAVSSAAPELVARVRAASDI---PVC  214 (269)
T ss_pred             EE-EEEEECCCCC--------HHHHHHHHHCCCC--CEEEEECCCCCC--C-C-CCCCHHHHHHHHHHHHHCCC---CCE
T ss_conf             12-8998589998--------8999999844888--089975454567--7-6-44417799999999971799---817


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH
Q ss_conf             7862257776544302689999899769983999744054
Q gi|254780200|r  250 ICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFS  289 (343)
Q Consensus       250 l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFv  289 (343)
                      ++|    |=      ++.+.++++.+-  -.-+|+-=+||
T Consensus       215 vGF----GI------s~~e~~~~~~~~--aDGvIVGSa~V  242 (269)
T PRK13115        215 VGL----GV------SSAAQAAEIAGY--ADGVIVGSALV  242 (269)
T ss_pred             EEC----CC------CCHHHHHHHHHH--CCEEEECHHHH
T ss_conf             972----78------999999999802--99999868999


No 207
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=23.39  E-value=53  Score=13.71  Aligned_cols=120  Identities=14%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             34557800689999999999973389986699983367502676279988899999999999726675670478622577
Q gi|254780200|r  178 PPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFG  257 (343)
Q Consensus       178 ~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~G  257 (343)
                      +.+.+...+|+.+.+.+.++         . |+|-          -||...+=.+.-..+.+++|-   +..++     |
T Consensus       130 ~~~~t~~elid~y~~l~~~y---------P-IisI----------EDpl~e~D~~gw~~lt~~lg~---~~qiV-----G  181 (296)
T pfam00113       130 SKWLTSDQLADLYKELIKKY---------P-IVSI----------EDPFDEDDWEAWKKLTASLGD---KIQIV-----G  181 (296)
T ss_pred             CCEECHHHHHHHHHHHHHHC---------C-EEEE----------ECCCCCHHHHHHHHHHHHHCC---CEEEE-----C
T ss_conf             62208999999999999869---------9-8899----------679881249999999997499---57998-----9


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             765443026899998997699839997440542212558887589999999759975898168987989999999
Q gi|254780200|r  258 RIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLE  332 (343)
Q Consensus       258 p~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~~fi~~La  332 (343)
                        -=|--.-.+.|++-.+++.-|-+++-|.=+---.||+     ++-++++++|.....--..--+.+.||.-||
T Consensus       182 --DDL~~Tn~~rl~~gi~~~~~NaiLiK~NQiGTlset~-----e~~~~ak~~g~~~ivShRSGETeD~~iaDLA  249 (296)
T pfam00113       182 --DDLTVTNPKRIAKAIEKKACNSLLLKVNQIGSVTESL-----AAVKMAKDAGWGVMVSHRSGETEDTFIADLV  249 (296)
T ss_pred             --CCCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHH-----HHHHHHHHCCCEEEEECCCCCCCCCHHHHHH
T ss_conf             --8755679999999985487771697121110199999-----9999999869649986698877652299988


No 208
>pfam10103 DUF2342 Uncharacterized conserved protein (DUF2342). Members of this family of bacterial hypothetical and uncharacterized proteins have no known function.
Probab=23.29  E-value=22  Score=16.41  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHCCCCCCCE-------EEEECCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999997266756704-------786225777654430268999989976
Q gi|254780200|r  231 HKTARLLKEFLSWPDDRFK-------ICFQSRFGRIKCLEPPTDKTVEKLAHD  276 (343)
Q Consensus       231 ~~t~~~i~~~l~~~~~~~~-------l~fQSr~Gp~~WL~P~t~~~l~~L~~~  276 (343)
                      ..+.....+.|+++.+++.       .+.|-.|...|||..++.+.+++++..
T Consensus       140 ~~NI~~~~~~l~v~~~d~rlwvalhE~aH~~lF~~~PWLr~~l~~~v~~~~~~  192 (341)
T pfam10103       140 PPNIAAVARGLGVPPDDFRLWLALHEAAHRRLFTAVPWLRDHLLGAVEEYARG  192 (341)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             67899999983999999999999999999999830828999999999999875


No 209
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.24  E-value=53  Score=13.69  Aligned_cols=165  Identities=17%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             HHHHHHHCCCCEEE-EEECCHHHHHHHH----H--HHHHHHHHHHHHHCCC------CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999870996589-9631711100146----8--9999999999871799------86421334557800689999999
Q gi|254780200|r  128 IINNLREEGCDRLL-IFPLYPQYSAATT----G--TAQDKVFQELIHMRWS------PSLRTVPPYYEDSDYISALAQSI  194 (343)
Q Consensus       128 ~l~~l~~~g~~~ii-~lPLyPqyS~sTt----g--S~~~~~~~~l~~~~~~------~~~~~I~~~~~~p~yI~a~~~~I  194 (343)
                      .+..+++.|..+|. ++|-|| ||+-.-    |  -+.+.+.+.+...+..      +...-+..||+-|...=.-...+
T Consensus        75 ~idAlr~a~A~~It~ViPY~~-YaRQDr~~~~ge~isak~vA~lL~~~g~d~vitvDlH~~~i~gfF~ipv~~l~~~~~~  153 (321)
T PRK02269         75 MVDALKRASAESISVVMPYYG-YARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLI  153 (321)
T ss_pred             HHHHHHHCCCCEEEEEECCCC-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCEEECHHH
T ss_conf             999998748973999813553-1304544578997269999998874487779996267477763269984111303899


Q ss_pred             HHHHHHCCCC-CCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC---------------
Q ss_conf             9999733899-866999833675026762799888999999999997266756704786225777---------------
Q gi|254780200|r  195 REHFESIQWT-PEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGR---------------  258 (343)
Q Consensus       195 ~~~l~~~~~~-~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp---------------  258 (343)
                      .+++++.... ++.++.|    |-    .|      ..+-++.+++.||.+   +.+...-|.+.               
T Consensus       154 ~~~i~~~~~~~~~~vvVs----PD----~G------~~~ra~~~A~~l~~~---~~~~~K~R~~~~~~~~~~~~~~gdV~  216 (321)
T PRK02269        154 ADYFDRHGLVGEDVVVVS----PD----HG------GVTRARKLAQFLKTP---IAIIDKRRSVDKMNTSEVMNIIGNVS  216 (321)
T ss_pred             HHHHHHHCCCCCCEEEEC----CC----CH------HHHHHHHHHHHCCCC---EEEEEEECCCCCCCCEEECCCCCCCC
T ss_conf             999998479876708971----79----31------999999999862787---89999873689887434203577406


Q ss_pred             --CCC-------CCHHHHHHHHHHHHCCCCCEEEECC-HHHH-CCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             --654-------4302689999899769983999744-0542-2125588875899999997599758981689
Q gi|254780200|r  259 --IKC-------LEPPTDKTVEKLAHDGIKSLAIITP-GFSS-DCLETSYEIAHEAKEIFVNGGGEKFTQVPCL  321 (343)
Q Consensus       259 --~~W-------L~P~t~~~l~~L~~~G~k~v~v~p~-gFvs-D~lETl~Eidie~~e~~~e~Gg~~~~rvp~l  321 (343)
                        .-.       .+=++.++.+.|.++|.++|.+++. |..+ +.+|-|           .++|.++.....+.
T Consensus       217 Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~rl-----------~~s~i~~ivvTdTi  279 (321)
T PRK02269        217 GKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLSGPALDNI-----------QKSAIEKLIVLDTI  279 (321)
T ss_pred             CCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-----------HCCCCCEEEEECCC
T ss_conf             9769996624314266999999998489982799997802784799998-----------60899889980897


No 210
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615; InterPro: IPR006502    This family of uncharacterised plant proteins are defined by a region found toward the C-terminus. This region is strongly conserved (greater than 30 equence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence. .
Probab=23.10  E-value=54  Score=13.67  Aligned_cols=48  Identities=21%  Similarity=0.227  Sum_probs=24.4

Q ss_pred             CCCHHHHHHCCCCHHHHHHHHHHHHHHH---CCCCCCCEE--EEECCCCCCCCCCHHH
Q ss_conf             6750267627998889999999999972---667567047--8622577765443026
Q gi|254780200|r  214 QMPVSYLLKGDPYGCHCHKTARLLKEFL---SWPDDRFKI--CFQSRFGRIKCLEPPT  266 (343)
Q Consensus       214 glP~~~~~~gDpY~~q~~~t~~~i~~~l---~~~~~~~~l--~fQSr~Gp~~WL~P~t  266 (343)
                      +||.-+|.++|.=..-+.=.+.+...-|   +.+-.+|+-  --||     +||+|+.
T Consensus        89 ~LP~VfVGk~~rL~~~v~l~c~a~k~SLk~~~m~~PPWR~~~YMqs-----KWlg~~~  141 (144)
T TIGR01615        89 SLPEVFVGKEERLKQLVRLVCDAAKKSLKKKGMPLPPWRKNRYMQS-----KWLGPYK  141 (144)
T ss_pred             HCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CCCCCCC
T ss_conf             3994773041678899999999999878746688888666545201-----1488877


No 211
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=22.99  E-value=54  Score=13.66  Aligned_cols=17  Identities=18%  Similarity=0.016  Sum_probs=10.6

Q ss_pred             CCCCCCHHHHHHHHHHHHC
Q ss_conf             7654430268999989976
Q gi|254780200|r  258 RIKCLEPPTDKTVEKLAHD  276 (343)
Q Consensus       258 p~~WL~P~t~~~l~~L~~~  276 (343)
                      |..|  =++.+.|..|+++
T Consensus       385 Pd~W--~dvk~rLp~l~qk  401 (473)
T COG4623         385 PDSW--FDVKKRLPLLAQK  401 (473)
T ss_pred             CHHH--HHHHHHHHHHHHC
T ss_conf             6058--8999870788753


No 212
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178   Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=22.78  E-value=54  Score=13.63  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=59.1

Q ss_pred             CHHHHHHH--HHHHCC-CCCCCHHHHHHHHHHHH----------HHHHHHCCCCC---------CCHHHHHCCCCCHHHH
Q ss_conf             47889999--987077-88740457775999999----------99865224784---------3001121045424789
Q gi|254780200|r   71 PSKIKHAY--AKIWNT-AKNESILRTHTRDQATN----------LAKRLESISSI---------VVDWAMRYGKPSVKEI  128 (343)
Q Consensus        71 ~~~~~~~Y--~~Iw~~-~gg~SPL~~~t~~qa~~----------L~~~L~~~~~~---------~V~~amry~~P~i~~~  128 (343)
                      |..-||.|  ++||.. ++=||-|... |+++++          |=|+|. +++|         .|---|--+-+.|=||
T Consensus         7 PA~fAEeYIveSIWn~~FPPGSiLPAE-RELsElIGVTRTTLREVLQRLA-RDGWLTIQHGKPTKVNnfWETSGLNILeT   84 (275)
T TIGR02812         7 PAGFAEEYIVESIWNNRFPPGSILPAE-RELSELIGVTRTTLREVLQRLA-RDGWLTIQHGKPTKVNNFWETSGLNILET   84 (275)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHHCCCCCCHHHHHHHHHH-HHCCCCCCCCCCCCCCCHHHCCCCCHHHH
T ss_conf             542354433221016434658987246-6575423766303789998876-41134365889986276243027357899


Q ss_pred             HHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHHHHHHHHHHCC---------CCCCCCCCCCCCCCHHHHH--HHHHHH
Q ss_conf             9999870996589--96317111001468999999999987179---------9864213345578006899--999999
Q gi|254780200|r  129 INNLREEGCDRLL--IFPLYPQYSAATTGTAQDKVFQELIHMRW---------SPSLRTVPPYYEDSDYISA--LAQSIR  195 (343)
Q Consensus       129 l~~l~~~g~~~ii--~lPLyPqyS~sTtgS~~~~~~~~l~~~~~---------~~~~~~I~~~~~~p~yI~a--~~~~I~  195 (343)
                      |-+|-.+++-.||  +|+     ++|....+|  +.+|++....         ...+.......+...||++  +++.|+
T Consensus        85 L~~LD~~~~P~l~dnLLS-----ARTnIS~IY--ir~A~K~np~~~~~~~~~VI~s~e~L~~~~s~~~F~~~SP~~~~~~  157 (275)
T TIGR02812        85 LIRLDGESVPSLIDNLLS-----ARTNISAIY--IRAAFKNNPEESEELIENVIKSLEVLANAESFAEFVEASPLAEKVK  157 (275)
T ss_pred             HHHHCCCCCCHHHHHHHH-----HHHCCCHHH--HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH
T ss_conf             986187777079999997-----764137788--9998622835689999999999999830401799985082689999


Q ss_pred             HHHHHC
Q ss_conf             999733
Q gi|254780200|r  196 EHFESI  201 (343)
Q Consensus       196 ~~l~~~  201 (343)
                      +.+++.
T Consensus       158 ~~l~d~  163 (275)
T TIGR02812       158 KELEDT  163 (275)
T ss_pred             HHHHCC
T ss_conf             874203


No 213
>KOG0460 consensus
Probab=22.77  E-value=54  Score=13.63  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=47.2

Q ss_pred             EEEEEC---CCCHHHHHHCCCCHHHHHHHHHHHHHHHCC---CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf             999833---675026762799888999999999997266---75670478622577765443026899998997699839
Q gi|254780200|r  208 LLVSFH---QMPVSYLLKGDPYGCHCHKTARLLKEFLSW---PDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSL  281 (343)
Q Consensus       208 llfSaH---glP~~~~~~gDpY~~q~~~t~~~i~~~l~~---~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v  281 (343)
                      -|=+||   ..+.||-.+-|+-     -.++-|.+..-.   .+. --+.-----||.    |-|.+.|--..+-|++++
T Consensus       104 TIn~aHveYeTa~RhYaH~DCP-----GHADYIKNMItGaaqMDG-aILVVaatDG~M----PQTrEHlLLArQVGV~~i  173 (449)
T KOG0460         104 TINAAHVEYETAKRHYAHTDCP-----GHADYIKNMITGAAQMDG-AILVVAATDGPM----PQTREHLLLARQVGVKHI  173 (449)
T ss_pred             EEEEEEEEEECCCCCCCCCCCC-----CHHHHHHHHHCCCCCCCC-EEEEEECCCCCC----CCHHHHHHHHHHCCCCEE
T ss_conf             6764356642244300147899-----638899875327323673-499997478988----406888888987287649


Q ss_pred             EEECC-HHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99744-05422125588875899999997599
Q gi|254780200|r  282 AIITP-GFSSDCLETSYEIAHEAKEIFVNGGG  312 (343)
Q Consensus       282 ~v~p~-gFvsD~lETl~Eidie~~e~~~e~Gg  312 (343)
                      +|+-= .=..|--|.|+=.+.|.||+..+.|.
T Consensus       174 vvfiNKvD~V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460         174 VVFINKVDLVDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             99971202468889999999999999997299


No 214
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.76  E-value=54  Score=13.63  Aligned_cols=51  Identities=27%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             786225777654430268999989976998399974405422125588875899999997599
Q gi|254780200|r  250 ICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGG  312 (343)
Q Consensus       250 l~fQSr~Gp~~WL~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg  312 (343)
                      +.|..-.|=.-=++|++.++++.+.+.|+|-+.+     +=||.||       ++..+++.|.
T Consensus       536 l~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~Mi-----TGD~~~T-------A~aIa~~~Gi  586 (917)
T COG0474         536 LVFLGLTGIEDPPREDVKEAIEELREAGIKVWMI-----TGDHVET-------AIAIAKECGI  586 (917)
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE-----CCCCHHH-------HHHHHHHHCC
T ss_conf             0402001212899711899999999889947998-----7999899-------9999998199


No 215
>TIGR02094 more_P_ylases alpha-glucan phosphorylases; InterPro: IPR011834    This family consists of known phosphorylases, and homologues believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related families: Glycogen/starch/alpha-glucan phosphorylase and Glycosyl transferase, family 35.; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=22.71  E-value=46  Score=14.11  Aligned_cols=51  Identities=14%  Similarity=0.176  Sum_probs=21.1

Q ss_pred             CCHH--HHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9888--999999999997266-75670478622577765443026899998997
Q gi|254780200|r  225 PYGC--HCHKTARLLKEFLSW-PDDRFKICFQSRFGRIKCLEPPTDKTVEKLAH  275 (343)
Q Consensus       225 pY~~--q~~~t~~~i~~~l~~-~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L~~  275 (343)
                      +|++  -+....++|++-|+. ++-+..+.|=-|-=|.-=-|=.+...+-+..+
T Consensus       413 tYKRa~Llf~D~eRL~~il~~n~~RPVQ~vFAGKAHP~D~~GK~~Iq~i~~~s~  466 (618)
T TIGR02094       413 TYKRATLLFRDLERLKRILNNNPERPVQIVFAGKAHPADEAGKELIQRIVEFSK  466 (618)
T ss_pred             CCCCHHHHCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             002613220777899998356888856889715567997545899999999862


No 216
>cd01017 AdcA Metal binding protein AcdA.  These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion.  The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains.  In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=22.53  E-value=55  Score=13.60  Aligned_cols=204  Identities=12%  Similarity=0.095  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH---HHHHHHCCC
Q ss_conf             59999999986522478430011210454247899999870996589963171110014689999999---999871799
Q gi|254780200|r   95 TRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVF---QELIHMRWS  171 (343)
Q Consensus        95 t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~---~~l~~~~~~  171 (343)
                      +-.+..+|++     .++.|..|.-+ +|++...++.+...++.   ++-+-       .+...-...   ..-......
T Consensus        43 ~p~d~~~l~~-----Adli~~nG~~l-E~~l~~~~~~~~~~~~~---vi~~~-------~~~~~~~~~~~~~~~~~~~~~  106 (282)
T cd01017          43 SPKDIARIAD-----ADVFVYNGLGM-ETWAEKVLKSLQNKKLK---VVEAS-------KGIKLLKAGGAEHDHDHSHSH  106 (282)
T ss_pred             CHHHHHHHHC-----CCEEEEECCCC-HHHHHHHHHHCCCCCCE---EEECC-------CCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999966-----99999918783-68999999853689977---99877-------895235567765555555445


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             86421334557800689999999999973389986699983367502676279988899999999999726675670478
Q gi|254780200|r  172 PSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKIC  251 (343)
Q Consensus       172 ~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~  251 (343)
                      ..-..=+++|-+|.....+++.|.+.|.+.+-..          -..+-++.+-|..++.+.-+.+.+.+.-..++--++
T Consensus       107 ~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~----------~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~v~  176 (282)
T cd01017         107 HHGDYDPHVWLSPVLAIQQVENIKDALIKLDPDN----------KEYYEKNAAAYAKKLEALDQEYRAKLAKAKGKTFVT  176 (282)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             5799998255781559999999999999868441----------799999999999999999999999874436785687


Q ss_pred             EEC-------CCC----------CCCCCCHH-HHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             622-------577----------76544302-689999899769983999744054221255888758999999975997
Q gi|254780200|r  252 FQS-------RFG----------RIKCLEPP-TDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE  313 (343)
Q Consensus       252 fQS-------r~G----------p~~WL~P~-t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~  313 (343)
                      |..       ++|          ++.=.+|. +.+.++.+.+.|++ ++++-+.|-..-.|++          +.+.|+.
T Consensus       177 ~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~If~e~~~~~~~~~~i----------a~e~g~~  245 (282)
T cd01017         177 QHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVK-YIFFEENASSKIAETL----------AKETGAK  245 (282)
T ss_pred             ECCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHH----------HHHHCCC
T ss_conf             3533789998669848654334888899999999999999985998-9998189990999999----------9981996


Q ss_pred             EEEEECCCCC-------CHHHHHHHHHHH
Q ss_conf             5898168987-------989999999999
Q gi|254780200|r  314 KFTQVPCLNS-------SNLSIDLLEKIT  335 (343)
Q Consensus       314 ~~~rvp~lN~-------~~~fi~~La~lv  335 (343)
                      -...-|+-+.       ...+++++..-+
T Consensus       246 v~~l~pl~~~~~~~~~~~~~Y~~~m~~N~  274 (282)
T cd01017         246 LLVLNPLETLTKEEIDDGKDYFSLMKENL  274 (282)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             78544766665234887366999999999


No 217
>PRK10927 essential cell division protein; Provisional
Probab=22.52  E-value=55  Score=13.60  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=27.1

Q ss_pred             CCHHHHHH-----HHHHHHHHHCCCCCCCEEEEECCCC-CCCC----CCHHH-----HHHHHHHHHCCCCCEEEE
Q ss_conf             98889999-----9999999726675670478622577-7654----43026-----899998997699839997
Q gi|254780200|r  225 PYGCHCHK-----TARLLKEFLSWPDDRFKICFQSRFG-RIKC----LEPPT-----DKTVEKLAHDGIKSLAII  284 (343)
Q Consensus       225 pY~~q~~~-----t~~~i~~~l~~~~~~~~l~fQSr~G-p~~W----L~P~t-----~~~l~~L~~~G~k~v~v~  284 (343)
                      .|.-||-.     -++-|..+|.+.      ++-||+. .+.|    ||||-     +.++..|...|+.+-+..
T Consensus       247 r~mvQCGSFK~~dQAEsvrA~LAF~------GieSrIts~ggWnRVvlGPy~~k~~a~~~~~~l~~ag~~~cI~~  315 (319)
T PRK10927        247 RWMVQCGSFRGAEQAETVRAQLAFE------GFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRL  315 (319)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHC------CHHHEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEC
T ss_conf             3666304564543688888999752------42213402698656884477857789999999986687773553


No 218
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=22.25  E-value=56  Score=13.56  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC----CCCCHHHHHHHH---HHCCCCEEEEE
Q ss_conf             47889999987077887404577759999999986522478430011210----454247899999---87099658996
Q gi|254780200|r   71 PSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRY----GKPSVKEIINNL---REEGCDRLLIF  143 (343)
Q Consensus        71 ~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry----~~P~i~~~l~~l---~~~g~~~ii~l  143 (343)
                      |.++.+.|..|    |-..||.+-     ..|++.|+  +...+++-|-=    |.-.|..++.|.   +.+|+++++-=
T Consensus        65 P~Ev~e~Y~~~----gRPTPL~RA-----~~LE~~L~--tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TE  133 (432)
T COG1350          65 PEEVREAYLQI----GRPTPLIRA-----KNLEEALG--TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTE  133 (432)
T ss_pred             CHHHHHHHHHH----CCCCCHHHH-----HHHHHHHC--CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf             69999999972----799721336-----45999849--98079996045478887772349999999875273034304


Q ss_pred             ECCHHH
Q ss_conf             317111
Q gi|254780200|r  144 PLYPQY  149 (343)
Q Consensus       144 PLyPqy  149 (343)
                      -=.=|+
T Consensus       134 TGAGQW  139 (432)
T COG1350         134 TGAGQW  139 (432)
T ss_pred             CCCCHH
T ss_conf             577517


No 219
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=22.14  E-value=56  Score=13.55  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             454247899999870996589963
Q gi|254780200|r  121 GKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus       121 ~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      +.|-|+-+++.|.+.|+++++++.
T Consensus        30 n~P~i~y~l~~l~~~G~~~i~i~~   53 (214)
T cd04198          30 NKPMIWYPLDWLEKAGFEDVIVVV   53 (214)
T ss_pred             CEEHHHHHHHHHHHCCCCEEEEEC
T ss_conf             997499999999986998899995


No 220
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.11  E-value=56  Score=13.54  Aligned_cols=149  Identities=17%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             HHHHHHCCCCEE-EEEECCHHHHHHHHHH-----HHHHHHHHHHHHCCC----CCCC--CCCCCC---------CCCHHH
Q ss_conf             999987099658-9963171110014689-----999999999871799----8642--133455---------780068
Q gi|254780200|r  129 INNLREEGCDRL-LIFPLYPQYSAATTGT-----AQDKVFQELIHMRWS----PSLR--TVPPYY---------EDSDYI  187 (343)
Q Consensus       129 l~~l~~~g~~~i-i~lPLyPqyS~sTtgS-----~~~~~~~~l~~~~~~----~~~~--~I~~~~---------~~p~yI  187 (343)
                      +.++++....+| +++|.|| ||+---.+     +.+-+.+.+...+..    ..++  -|..|+         ..+.|+
T Consensus       115 IdA~kraSA~rItaViPy~g-YaRQDrk~~RepItAkLvA~lL~~aGvdrviT~DLHa~qIQgfF~i~pvDnl~~~~~~~  193 (381)
T PRK06827        115 IDAIRQAKANRITVIMPLLY-YSRQHKRKGRESLDCALALQELEELGVDHILTFDIHDPNIQNAIPLMSFENLYPSYEIV  193 (381)
T ss_pred             HHHHHHCCCCEEEEECCCCC-HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             98743435874899856881-31257777888747999999999719996999757872247787788754677538999


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC------CCC--
Q ss_conf             999999999997338998669998336750267627998889999999999972667567047862257------776--
Q gi|254780200|r  188 SALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRF------GRI--  259 (343)
Q Consensus       188 ~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~------Gp~--  259 (343)
                      +.+.+.....  ..+ .+..++.|=        +.|..      +-++..++.||.+   +-+.|--|-      |+.  
T Consensus       194 ~~l~~~~~~~--~~~-~~~~vVVSP--------D~Ggv------~RA~~~A~~L~~~---laii~KrR~~s~v~~~~n~i  253 (381)
T PRK06827        194 KSLLENEKLL--ELD-KENLVVISP--------DTGAM------DRAKYYSSVLKVP---LGLFYKRRDYSTVVNGKNPI  253 (381)
T ss_pred             HHHHHHCCCC--CCC-CCCCEEEEC--------CCCCH------HHHHHHHHHCCCC---EEEEEEECCCCCCCCCCCCE
T ss_conf             9999845312--368-677779926--------99738------9999999971989---89999764676445667843


Q ss_pred             ---CC------------------CCHHHHHHHHHHHHCCCCCEEEECC-HHHHCCHHHHHH
Q ss_conf             ---54------------------4302689999899769983999744-054221255888
Q gi|254780200|r  260 ---KC------------------LEPPTDKTVEKLAHDGIKSLAIITP-GFSSDCLETSYE  298 (343)
Q Consensus       260 ---~W------------------L~P~t~~~l~~L~~~G~k~v~v~p~-gFvsD~lETl~E  298 (343)
                         +-                  .+=++.++.+.|.+.|.++|.+++- |..||.+|.+.+
T Consensus       254 ~~~~~lggdV~GK~~IIvDDmIdTggTl~~aA~~Lk~~GA~~V~a~aTHgvfS~a~e~~~~  314 (381)
T PRK06827        254 VVHELLGRDVEGKDVFIVDDMIASGGSVLDAAKELKSRGAKKIICAVSFPFFTEGLEKFDK  314 (381)
T ss_pred             EEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHCCCHHHHHHH
T ss_conf             6752413556798899972431452689999999998799889999973660476999976


No 221
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase.  Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of   Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=21.94  E-value=56  Score=13.52  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0454247899999870996589963
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      .+.|.++-.+++|.+.|+++++++.
T Consensus        29 ~~kPli~~~l~~l~~~Gi~~i~iv~   53 (240)
T cd02538          29 YDKPMIYYPLSTLMLAGIREILIIS   53 (240)
T ss_pred             CCEEEHHHHHHHHHHCCCCCCEEEC
T ss_conf             9997189999999985996231002


No 222
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=21.86  E-value=56  Score=13.51  Aligned_cols=24  Identities=17%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             454247899999870996589963
Q gi|254780200|r  121 GKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus       121 ~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      +.|-|+-+++.|.+.|+++|+++-
T Consensus        30 n~Pli~y~l~~L~~~G~~ei~v~~   53 (217)
T cd04197          30 NVPLIDYTLEFLALNGVEEVFVFC   53 (217)
T ss_pred             CEEHHHHHHHHHHHCCCCEEEEEC
T ss_conf             998399999999987997799994


No 223
>TIGR01710 typeII_sec_gspG general secretion pathway protein G; InterPro: IPR010054   This entry represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=21.79  E-value=57  Score=13.50  Aligned_cols=58  Identities=16%  Similarity=0.120  Sum_probs=36.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             99876665125747889999987077887404577759999999986522478430011210454247899999870
Q gi|254780200|r   59 RPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREE  135 (343)
Q Consensus        59 ~~il~~~I~~~R~~~~~~~Y~~Iw~~~gg~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~~~l~~l~~~  135 (343)
                      -=+|+++|+|.=-.+..+.             -..-++.|.++|++.|+-   +.-..+.   .|+-|+.|+.|+.+
T Consensus        15 lGLLaalv~P~l~s~~d~A-------------~~~~a~~qi~~l~~ALd~---yrLDng~---yPt~eQGL~ALV~k   72 (137)
T TIGR01710        15 LGLLAALVVPKLFSQADKA-------------KAQVAKAQIKALKNALDM---YRLDNGR---YPTEEQGLAALVKK   72 (137)
T ss_pred             HHHHHHHHHHHHCCCCCHH-------------HHHHHHHHHHHHHHHHHH---HHHHHCC---CCCCHHHHHHHCCC
T ss_conf             9999999865534875535-------------788899999999999876---6566258---98815789982779


No 224
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.68  E-value=57  Score=13.49  Aligned_cols=76  Identities=11%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             5424789999987099658996317111001468999999999987179986421-334557800689999999999973
Q gi|254780200|r  122 KPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRT-VPPYYEDSDYISALAQSIREHFES  200 (343)
Q Consensus       122 ~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~-I~~~~~~p~yI~a~~~~I~~~l~~  200 (343)
                      -|..+..+++|++.|+.  +++-+.|+.........++.+.+.   ....+.... +.-.+.+|.+.+.+.+.+...+..
T Consensus        73 FPdp~~m~~~l~~~G~~--~v~~~~P~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~d~~np~~~~~~~~~~~~~~~~  147 (292)
T cd06595          73 FPDPEKLLQDLHDRGLK--VTLNLHPADGIRAHEDQYPEMAKA---LGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK  147 (292)
T ss_pred             CCCHHHHHHHHHHCCCE--EEEEECCCCCCCCCHHHHHHHHHH---CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             99999999999978998--999817875567545779999885---0888888996150489989999999987555430


Q ss_pred             CC
Q ss_conf             38
Q gi|254780200|r  201 IQ  202 (343)
Q Consensus       201 ~~  202 (343)
                      ..
T Consensus       148 ~G  149 (292)
T cd06595         148 QG  149 (292)
T ss_pred             CC
T ss_conf             68


No 225
>pfam03945 Endotoxin_N delta endotoxin, N-terminal domain. This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C terminal extension is cleaved in some members. Once activated the endotoxin binds to the gut epithelium and causes cell lysis leading to death. This activated region of the delta endotoxin is composed of three structural domains. The N-terminal helical domain is involved in membrane insertion and pore formation. The second and third domains are involved in receptor binding.
Probab=21.63  E-value=57  Score=13.48  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=31.5

Q ss_pred             CHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             001121045424789999987099658996317111001468999999999987179
Q gi|254780200|r  114 VDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRW  170 (343)
Q Consensus       114 V~~amry~~P~i~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~  170 (343)
                      |.-.+..-+-.+...+..++..|. ++.+||+|-|.+. -.-.-++....--.+|+.
T Consensus       100 v~~~f~~~~~~f~~~~~~F~~~gy-ev~lLp~YaqaAn-LHLlLLrd~i~yg~~Wg~  154 (224)
T pfam03945       100 VRTRFNILDSLFTNAIPSFAVSGY-EVLLLPVYAQAAN-LHLLLLRDAVIFGNRWGL  154 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999997799826885-2568999999999-999999999999999399


No 226
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=21.57  E-value=57  Score=13.47  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             689999899769983999744054221255888758999999975997589816
Q gi|254780200|r  266 TDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVP  319 (343)
Q Consensus       266 t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp  319 (343)
                      +.+.+.+..+   .++-|.++||=.|+-+-      ..+++|...|| .|.+|.
T Consensus       117 ~~~~~~~~~~---~~i~i~tig~G~~~~~~------~L~~iA~~~~G-~~~~v~  160 (171)
T cd01461         117 ILKNVREALS---GRIRLFTFGIGSDVNTY------LLERLAREGRG-IARRIY  160 (171)
T ss_pred             HHHHHHHHHC---CCCEEEEEEECCCCCHH------HHHHHHHCCCC-EEEECC
T ss_conf             9999999744---89639999978979999------99999972898-899889


No 227
>PRK13463 phosphatase PhoE; Provisional
Probab=21.52  E-value=57  Score=13.46  Aligned_cols=124  Identities=15%  Similarity=0.224  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHH--HHHHHHHH-CCCCEEEEEECC-----HHHHHHHHHHHHH
Q ss_conf             404577759999999986522478430011210454247--89999987-099658996317-----1110014689999
Q gi|254780200|r   88 ESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVK--EIINNLRE-EGCDRLLIFPLY-----PQYSAATTGTAQD  159 (343)
Q Consensus        88 ~SPL~~~t~~qa~~L~~~L~~~~~~~V~~amry~~P~i~--~~l~~l~~-~g~~~ii~lPLy-----PqyS~sTtgS~~~  159 (343)
                      .+||...-+.||++|.+.|+..   .+  ..-|+.|.-.  ++.+-+.. .++. ++..+-+     ..+..-|.....+
T Consensus        26 D~~Lt~~G~~QA~~l~~~l~~~---~~--~~i~sSpl~Ra~eTA~~i~~~~~l~-i~~~~~L~E~~~G~weG~~~~e~~~   99 (203)
T PRK13463         26 NSALTENGILQAKQLGERMKDL---SI--HAIYSSPSERTLHTAELIKGERDIP-IIADEHFYEINMGIWEGQTIDDIER   99 (203)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CC--CEEECCCCCCCHHHHHHHHHCCCCC-EEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             9983999999999998761478---87--8898078657899999998537997-7877041127887336991899998


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCCEEEEEECCCCHHHHH
Q ss_conf             999999871799864213345578006899999999999733--89986699983367502676
Q gi|254780200|r  160 KVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESI--QWTPEMLLVSFHQMPVSYLL  221 (343)
Q Consensus       160 ~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~--~~~~~~llfSaHglP~~~~~  221 (343)
                      .+-+....+...|.. +-  ...-+.|. .+.+++.++++..  ......++..+||-..+.+-
T Consensus       100 ~~p~~~~~~~~~~~~-~~--~~~GEs~~-~~~~Rv~~~l~~i~~~~~~~~vlvVsHg~~ir~ll  159 (203)
T PRK13463        100 QYPDDIQLFWNEPHL-FQ--STSGENFE-AVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLLV  159 (203)
T ss_pred             HCHHHHHHHHHCCCC-CC--CCCCCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHH
T ss_conf             799999998629122-68--99998999-99999999999999888989199993979999999


No 228
>pfam11633 Nsp3 Replicase polyprotein 1ab. This family of proteins represents Nsp3, the product of ORF1a in group 2 coronavirus.This is the largest replicase subunit.
Probab=21.46  E-value=58  Score=13.45  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             689999899769983999744054221255888758999999975997589816898798
Q gi|254780200|r  266 TDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSN  325 (343)
Q Consensus       266 t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~~~~rvp~lN~~~  325 (343)
                      +.|++..|-.-| +-++.+|+||+...+. |.+-....|    ..-.-+...+|....=|
T Consensus        80 l~dVi~alNs~~-~~l~~mPfGyVthG~~-La~sa~~mR----~ltvP~vv~v~S~~~Vp  133 (142)
T pfam11633        80 LADVITALNSLG-KPLCMMPFGYVTHGLD-LAVSAVSMR----SLTVPHVVVVPSKDQVP  133 (142)
T ss_pred             HHHHHHHHHHCC-CCEEEEEEEEEECCCC-HHHHHHHHH----HCCCCEEEEECCCCCCH
T ss_conf             899999886228-9707757678752722-899876876----14556699942824035


No 229
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=21.44  E-value=58  Score=13.45  Aligned_cols=25  Identities=16%  Similarity=0.402  Sum_probs=18.7

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0454247899999870996589963
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      +..|-|.-+++++.+.|+++|+++.
T Consensus        37 ~dkPii~~~vee~~~aGI~ei~iV~   61 (302)
T PRK13389         37 VDKPLIQYVVNECIAAGITEIVLVT   61 (302)
T ss_pred             CCEEHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9887599999999986997899992


No 230
>PRK05282 peptidase E; Validated
Probab=20.93  E-value=59  Score=13.38  Aligned_cols=13  Identities=15%  Similarity=0.061  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             8999999987489
Q gi|254780200|r   35 FSLRRYLREFLLD   47 (343)
Q Consensus        35 ~~V~~yL~~fl~D   47 (343)
                      +-..+.+++||.+
T Consensus        18 ~~~~~~i~~~~~~   30 (233)
T PRK05282         18 EHALPLIAELLAG   30 (233)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999847


No 231
>PRK10015 hypothetical protein; Provisional
Probab=20.76  E-value=59  Score=13.36  Aligned_cols=12  Identities=33%  Similarity=0.454  Sum_probs=8.9

Q ss_pred             CEEEEEECCCCH
Q ss_conf             669998336750
Q gi|254780200|r  206 EMLLVSFHQMPV  217 (343)
Q Consensus       206 ~~llfSaHglP~  217 (343)
                      ..+=++||-||+
T Consensus       272 ~~~eY~A~~Ipe  283 (429)
T PRK10015        272 KLLEYSAHMVPE  283 (429)
T ss_pred             EEEEECCCCCCC
T ss_conf             798862543587


No 232
>TIGR01429 AMP_deaminase AMP deaminase; InterPro: IPR006329   These sequences describe AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the conserved domain which defines this group of sequences.; GO: 0003876 AMP deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=20.72  E-value=14  Score=17.80  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=21.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCEE------------EEECCCC---CCCCCCHHH
Q ss_conf             7998889999999999972667567047------------8622577---765443026
Q gi|254780200|r  223 GDPYGCHCHKTARLLKEFLSWPDDRFKI------------CFQSRFG---RIKCLEPPT  266 (343)
Q Consensus       223 gDpY~~q~~~t~~~i~~~l~~~~~~~~l------------~fQSr~G---p~~WL~P~t  266 (343)
                      .||  -|.+-|-++++|...+..=-|.|            +-||=|-   +.+||||+-
T Consensus       526 DDP--LQFhYTkEaLmEEYaiAAQvwkLS~cD~CElARNSVLQSGfe~~~K~~wLG~dY  582 (616)
T TIGR01429       526 DDP--LQFHYTKEALMEEYAIAAQVWKLSACDMCELARNSVLQSGFEHQVKEHWLGPDY  582 (616)
T ss_pred             CCC--CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH
T ss_conf             874--201231112578999999988740422778763344432510343234238773


No 233
>pfam07090 DUF1355 Protein of unknown function (DUF1355). This family consists of several hypothetical bacterial proteins of around 250 residues in length. The function of this family is unknown.
Probab=20.72  E-value=60  Score=13.35  Aligned_cols=121  Identities=9%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-----CC
Q ss_conf             9631711100146899999999998717998642133455780068999999999997338998669998336-----75
Q gi|254780200|r  142 IFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQ-----MP  216 (343)
Q Consensus       142 ~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHg-----lP  216 (343)
                      -+==|.+|+.++..+..+.+..++.+.+.  +++.++.--....|-..+     +.|.    ..|.+|||==|     ||
T Consensus        15 h~KGfd~f~s~~~~~ga~~~~~al~~~~~--~v~~mp~h~a~~~FP~t~-----eeL~----~YD~VILSDiGantllL~   83 (183)
T pfam07090        15 HIKGFDQFTSLKYDEGADLLLFAILRSPY--DVDYMPAHDAQIAFPVTL-----EELS----AYDAVILSDIGSNTLLLQ   83 (183)
T ss_pred             EECCCCCCCCCCHHCCHHHHHHHHHHCCC--EEEEECCCCCHHHCCCCH-----HHHH----CCCEEEEEECCCCEEECC
T ss_conf             75352355431100487999999986795--189742310464577388-----8884----088899950576605318


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             026762799888999999999997266756704786225777654430268999989
Q gi|254780200|r  217 VSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKL  273 (343)
Q Consensus       217 ~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~fQSr~Gp~~WL~P~t~~~l~~L  273 (343)
                      -..-.+|..-...|....+-|.+-=++.----.++||--.|...|-.--++++|.--
T Consensus        84 p~t~~~g~~~pnrl~li~~yV~~GG~l~MiGGy~sF~Gi~g~~~~~~Tpv~~vLPV~  140 (183)
T pfam07090        84 PDTWYRSKRPPNRLDLIADYVANGGALLMVGGYLSFQGIDGKARYANTPLAEVLPVT  140 (183)
T ss_pred             CHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCHHHCCCEE
T ss_conf             336652650830999999999808967996431664103666561587086712534


No 234
>PRK10122 UTP--glucose-1-phosphate uridylyltransferase subunit GalF; Provisional
Probab=20.51  E-value=60  Score=13.32  Aligned_cols=25  Identities=16%  Similarity=0.472  Sum_probs=21.3

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0454247899999870996589963
Q gi|254780200|r  120 YGKPSVKEIINNLREEGCDRLLIFP  144 (343)
Q Consensus       120 y~~P~i~~~l~~l~~~g~~~ii~lP  144 (343)
                      +..|-|+-+++++.+.|+++|+++.
T Consensus        32 ~dkPii~~~vee~~~aGI~eiiiV~   56 (297)
T PRK10122         32 VDKPMIQYIVDEIVAAGIKEIVLVT   56 (297)
T ss_pred             CCEEHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9853699999999987997899991


No 235
>PRK13134 consensus
Probab=20.44  E-value=60  Score=13.31  Aligned_cols=189  Identities=14%  Similarity=0.105  Sum_probs=87.5

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHC-CCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHCCCCCCCHHHHHH
Q ss_conf             6799997178889999889999999874-89544117868889987666512574788999-998707788740457775
Q gi|254780200|r   18 KIGVLLVNLGTPDGHDFFSLRRYLREFL-LDKRVVELPSWQWRPILFGYILNFRPSKIKHA-YAKIWNTAKNESILRTHT   95 (343)
Q Consensus        18 K~gvLL~n~G~P~~~~~~~V~~yL~~fl-~D~~Vi~~p~~~~~~il~~~I~~~R~~~~~~~-Y~~Iw~~~gg~SPL~~~t   95 (343)
                      |-=|..+..|=|+.   +.-.+.++.+- ..-++|++.-++--|+.-|       +-+++. ++.+    .+|.-+....
T Consensus        19 ~ali~yitaG~P~~---e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADG-------PvIq~A~~rAL----~~G~~~~~~~   84 (257)
T PRK13134         19 PALIPFLTAGFPTS---ERFWDELEALDAAGADIIEVGVPFSDPVADG-------PVVAAASQRAL----ESGVTLRWIM   84 (257)
T ss_pred             CEEEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------HHHHHHHHHHH----HCCCCHHHHH
T ss_conf             57998870707997---9999999999977999999789888876558-------99999999999----6799878999


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHCCCCCH----HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999998652247843001121045424----7899999870996589963171110014689999999999871799
Q gi|254780200|r   96 RDQATNLAKRLESISSIVVDWAMRYGKPSV----KEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWS  171 (343)
Q Consensus        96 ~~qa~~L~~~L~~~~~~~V~~amry~~P~i----~~~l~~l~~~g~~~ii~lPLyPqyS~sTtgS~~~~~~~~l~~~~~~  171 (343)
                      + +.+.++++    .+.++ +-|.|++|..    ++-++++++.|++-+++ |=.|--       --+.+...+.+.+. 
T Consensus        85 ~-~~~~~~~~----~~~pi-vlMtY~N~i~~yG~e~F~~~~~~aGvdGvIi-pDLP~e-------E~~~~~~~~~~~gi-  149 (257)
T PRK13134         85 D-GLAARKGR----LRAGL-VLMGYLNPFMQYGFERFVRDAADAGVAGCII-PDLPLD-------EDADLRALLAARGM-  149 (257)
T ss_pred             H-HHHHHHCC----CCCCE-EEEECCHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHH-------HHHHHHHHHHHCCC-
T ss_conf             9-99987446----89998-9985345999746899999998679875994-699977-------88999999997598-


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             86421334557800689999999999973389986699983367502676279988899999999999726675670478
Q gi|254780200|r  172 PSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKIC  251 (343)
Q Consensus       172 ~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~~~~~~l~  251 (343)
                      ..+.+|.+= ..+       ++|+.-.....+  .....|--|+-=  .+.  .-..+..+..+.|.+..++   +..++
T Consensus       150 ~~I~lvaPt-t~~-------~Ri~~i~~~s~g--FIY~vs~~GvTG--~~~--~~~~~~~~~i~~ik~~t~~---Pv~vG  212 (257)
T PRK13134        150 DLIALVGPN-TGE-------GRMREYAAVASG--YVYVVSVMGTTG--VRD--GLPVEVADTLARARQCFSI---PVALG  212 (257)
T ss_pred             CEEEECCCC-CCH-------HHHHHHHHHCCC--EEEEEECCCCCC--CCC--CCHHHHHHHHHHHHHHCCC---CEEEE
T ss_conf             269963899-999-------999999962888--089984355668--764--5528899999999970699---87998


Q ss_pred             E
Q ss_conf             6
Q gi|254780200|r  252 F  252 (343)
Q Consensus       252 f  252 (343)
                      |
T Consensus       213 F  213 (257)
T PRK13134        213 F  213 (257)
T ss_pred             C
T ss_conf             0


No 236
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=20.42  E-value=60  Score=13.31  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCH
Q ss_conf             55780068999999999997338998669998336750
Q gi|254780200|r  180 YYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPV  217 (343)
Q Consensus       180 ~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~  217 (343)
                      .|-++.=.+.+.+.|+.+++. ......|++|+||-|=
T Consensus        27 lfGQhla~~~v~~al~~~l~~-~~p~KpLVlSfHG~tG   63 (127)
T pfam06309        27 LFGQHLVKQLVVRSVKGHWEN-PKPRKPLVLSFHGWTG   63 (127)
T ss_pred             CCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCC
T ss_conf             347798999999999999748-9999974887018999


No 237
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase; InterPro: IPR006296   This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. The family does not contain a number of homologs that appear to represent sequences derived from within the family but to have changed substantially.; GO: 0004414 homoserine O-acetyltransferase activity, 0009086 methionine biosynthetic process.
Probab=20.35  E-value=61  Score=13.30  Aligned_cols=59  Identities=10%  Similarity=0.159  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHHHCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHH
Q ss_conf             302689999899769983999744054221255888758999999975997-589816898798999
Q gi|254780200|r  263 EPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE-KFTQVPCLNSSNLSI  328 (343)
Q Consensus       263 ~P~t~~~l~~L~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~e~Gg~-~~~rvp~lN~~~~fi  328 (343)
                      ..++.++|+++..    .  +.=+||.||-|=+..|- .|..+.+..++.. .|.-|++.-.||.|.
T Consensus       320 ~~~~~~AL~~~~~----~--~lv~s~~sD~Lfp~~~~-~e~~~~l~~~~~~V~Y~ei~S~~GHDAFL  379 (395)
T TIGR01392       320 RGSLTEALAAIKA----P--FLVVSITSDWLFPPAES-RELAKALPAAGLRVTYAEIESPYGHDAFL  379 (395)
T ss_pred             CCCHHHHHHHCCC----C--EEEEEEECCCCCCHHHH-HHHHHHHHCCCCEEEEEEEECCCCCCCCC
T ss_conf             9897999983798----8--89998606876688999-99999985036406688852689986000


No 238
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=20.35  E-value=61  Score=13.30  Aligned_cols=184  Identities=16%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHH--HHHHCCCCHHHHH--HHHHHHCCCCCCCHHH
Q ss_conf             86799997178889999889999999874895441178688899876--6651257478899--9998707788740457
Q gi|254780200|r   17 GKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILF--GYILNFRPSKIKH--AYAKIWNTAKNESILR   92 (343)
Q Consensus        17 ~K~gvLL~n~G~P~~~~~~~V~~yL~~fl~D~~Vi~~p~~~~~~il~--~~I~~~R~~~~~~--~Y~~Iw~~~gg~SPL~   92 (343)
                      .|.|=+-|  ++|.+    ..-.+|+.+.....=-+-. .-.-.+|+  .-|++|-|.|.+.  +|-.+..-.-+||+-|
T Consensus       113 t~~G~f~m--~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~lr~~pk~Lk~iPgkaqD~r~~~~~~qYWl~gs~eN  185 (1207)
T PRK13405        113 TRMGKFDM--SGPAS----GALALLKKLRGKKGSGSSG-AGQMAMLRRLPKILRFIPGTAQDLRAYFLTLQYWLAGSDEN  185 (1207)
T ss_pred             HCCCCEEE--CCCCC----CHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             45244550--79985----6689999854889998656-63888875320543348843899999999999882799899


Q ss_pred             HHHHHHHHHHHHHHHCC----------CCCC-CHHHHHCCCCCHH----HHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Q ss_conf             77599999999865224----------7843-0011210454247----899999870-996589963171110014689
Q gi|254780200|r   93 THTRDQATNLAKRLESI----------SSIV-VDWAMRYGKPSVK----EIINNLREE-GCDRLLIFPLYPQYSAATTGT  156 (343)
Q Consensus        93 ~~t~~qa~~L~~~L~~~----------~~~~-V~~amry~~P~i~----~~l~~l~~~-g~~~ii~lPLyPqyS~sTtgS  156 (343)
                      ..  .....|..++...          ..-+ .+..|-.++|...    +.++.+... +-.-.|.+-+|=-|--+.--.
T Consensus       186 ~~--~m~~~l~~~Y~~~~~~~~~~~~~~~~PveyP~~GlyHP~~~~~~~~~~~~~~~~~~~~ptVgilfyRs~~l~gn~~  263 (1207)
T PRK13405        186 VA--NMVRFLVSRYAAGPRAALRGIAKAEAPIEYPDVGLYHPRMPGRITEDLDDLPRPAGAKGTVGLLLMRSYVLAGNTA  263 (1207)
T ss_pred             HH--HHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCEEEEEEEHHHHHCCCCH
T ss_conf             99--9999999985356312213788999871057741028999855320587555545789809999606557238848


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCH
Q ss_conf             9999999998717998642133455780068999999999997338998669998336750
Q gi|254780200|r  157 AQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPV  217 (343)
Q Consensus       157 ~~~~~~~~l~~~~~~~~~~~I~~~~~~p~yI~a~~~~I~~~l~~~~~~~~~llfSaHglP~  217 (343)
                      .++.+.+++...+-.    .|+-|...=..-    ..|+..+..........|.|..|-+.
T Consensus       264 ~idalI~alE~~Gl~----viPvF~~gld~~----~ai~~~f~~~~~~~vDalvs~tgFsL  316 (1207)
T PRK13405        264 HYDGVIEAFEAKGLR----VVPAFASGLDGR----PAIERYFMKDGRPTVDAVVSLTGFSL  316 (1207)
T ss_pred             HHHHHHHHHHHCCCE----EEEEEECCCCCC----HHHHHHHHHCCCCCCEEEEEECCEEC
T ss_conf             999999999987991----889986787871----77999986268985118986031103


No 239
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.29  E-value=61  Score=13.29  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=46.8

Q ss_pred             HHHHHHHHHH-HHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCC-----CCC
Q ss_conf             9999999999-7338998669998336750267627998889999999999972667-56704786225777-----654
Q gi|254780200|r  189 ALAQSIREHF-ESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWP-DDRFKICFQSRFGR-----IKC  261 (343)
Q Consensus       189 a~~~~I~~~l-~~~~~~~~~llfSaHglP~~~~~~gDpY~~q~~~t~~~i~~~l~~~-~~~~~l~fQSr~Gp-----~~W  261 (343)
                      .+.++.++.. ..+.+. ..++.--|--|.-  +.  .|-.+|.+.-..+-..||.. +..|.+-=--||-|     .+|
T Consensus        88 d~gdRlars~~~a~~~~-~~VliIg~DcP~l--t~--elLa~a~taL~~~paVLGpa~dGGy~llgLrr~~pe~fe~ipw  162 (211)
T COG3222          88 DLGDRLARSHVDAFDGS-YPVLIIGMDCPGL--TA--ELLADAFTALLQIPAVLGPAFDGGYYLLGLRRFAPELFEAIPW  162 (211)
T ss_pred             CHHHHHHHHHHHHHCCC-CCEEEEECCCCCC--CH--HHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCHHHHHCCCC
T ss_conf             88899999999975688-7279982589764--79--9999999997147610222225837899731048999950888


Q ss_pred             CCHHHH-HHHHHHHHCCCCCEEEE
Q ss_conf             430268-99998997699839997
Q gi|254780200|r  262 LEPPTD-KTVEKLAHDGIKSLAII  284 (343)
Q Consensus       262 L~P~t~-~~l~~L~~~G~k~v~v~  284 (343)
                      =+|.+- .+++.+...|...-++-
T Consensus       163 g~~~v~~lTl~~lrqng~~~~llp  186 (211)
T COG3222         163 GTPDVLELTLKALRQNGIDVYLLP  186 (211)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf             874599999999997499611367


No 240
>KOG0434 consensus
Probab=20.23  E-value=61  Score=13.28  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=11.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             3345578006899999999999733
Q gi|254780200|r  177 VPPYYEDSDYISALAQSIREHFESI  201 (343)
Q Consensus       177 I~~~~~~p~yI~a~~~~I~~~l~~~  201 (343)
                      +---|.++.|++-.....+--+++.
T Consensus       848 ~ivi~~d~~~ledik~l~~yI~eEl  872 (1070)
T KOG0434         848 LIVIHSDEEYLEDIKSLERYILEEL  872 (1070)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             3787487899877999999999860


No 241
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=20.15  E-value=61  Score=13.27  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=11.8

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999717888999988999999987
Q gi|254780200|r   20 GVLLVNLGTPDGHDFFSLRRYLREF   44 (343)
Q Consensus        20 gvLL~n~G~P~~~~~~~V~~yL~~f   44 (343)
                      ||+    |+-.+...-.|...|..|
T Consensus       106 avI----G~~~S~~s~~va~ll~~f  126 (463)
T cd06376         106 GVI----GASASSVSIMVANILRLF  126 (463)
T ss_pred             EEE----CCCCCCHHHHHHHHHHCC
T ss_conf             998----998741899999987247


No 242
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit; InterPro: IPR012780   Carbon monoxide dehydrogenases catalyse the reversible oxidation of carbon monoxide to carbon dioxide as shown below , : CO + H(2)O + A == CO(2) + AH(2) A variety of electron acceptors can be used by these enzymes including ferredoxin, methyl viologen and benzyl viologen. Under anaerobic conditions, carbon monoxide is utilised by a number of methanogenic archaea and acetogenic, sulphate-reducing or phototrophic bacteria. Under aerobic conditions carbon monoxide can be used as sole carbon and energy source by the carboxidotrophic bacteria, a taxonomically diverse group of obligate or facultative chemolithoautotrophic species. The anaerobic dehydrogenases are mostly nickel-containing iron-sulphur enzymes, while the The aerobic enzymes categorised so far are molybdenum-containing iron-sulphur proteins.   This entry represents the large subunit of the molybdenum-containing carbon monoxide dehydrogenase found in aerobic bacteria. This enzyme is a dimer of heterotrimers, where each heterotrimer consists of a small iron-sulphur subunit, a medium FAD-containing flavoprotein subunit and a large molybdopterin-containign subunit which contains the active site , . The large subunit is divided into two domains. The N-terminal domain is composed of mainly of a five-and four-stranded mixed beta-sheet and interacts with the small and medium subunits. The C-terminal domain contains a region which interacts with its counterpart in the overall dimer, providing the main dimer contact, and a beta-sheet surrounded by alpha helices. The active site located in this subunit contains a novel dinuclear heterometal [CuSMo(=O)OH] cluster.; GO: 0005507 copper ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0030151 molybdenum ion binding.
Probab=20.13  E-value=59  Score=13.37  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             CHHHHHHH--HHHHHHHHCCCCCCCEE-------------EEECCCCC
Q ss_conf             88899999--99999972667567047-------------86225777
Q gi|254780200|r  226 YGCHCHKT--ARLLKEFLSWPDDRFKI-------------CFQSRFGR  258 (343)
Q Consensus       226 Y~~q~~~t--~~~i~~~l~~~~~~~~l-------------~fQSr~Gp  258 (343)
                      -+-|=++|  +|.|++.||+|.+...+             +|=||..|
T Consensus       499 sQGQGH~TTyAQIiA~ELGIP~e~I~v~~GdTd~aPyGLGTYGSRSTP  546 (775)
T TIGR02416       499 SQGQGHETTYAQIIATELGIPAEDIDVEEGDTDTAPYGLGTYGSRSTP  546 (775)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             369864304666655552788011067207878888566567765542


Done!