RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
(343 letters)
>gnl|CDD|144384 pfam00762, Ferrochelatase, Ferrochelatase.
Length = 312
Score = 378 bits (973), Expect = e-105
Identities = 141/323 (43%), Positives = 192/323 (59%), Gaps = 12/323 (3%)
Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
K VLL+NLG P+ + +R +LR FL D+RV+ELP W L G IL RP K A
Sbjct: 1 KTAVLLLNLGGPETPE--DVRPFLRNFLSDRRVIELPLQLW---LAGIILPERPKKSAEA 55
Query: 78 YAKIWNTAKNESILRTHTRDQATNLAKRL-ESISSIVVDWAMRYGKPSVKEIINNLREEG 136
Y KI S L TR QA L KRL E + + V AMRYG PS+++ + L+ +G
Sbjct: 56 YRKI----GGGSPLNVITRAQAEALQKRLGERGADVKVYLAMRYGPPSIEDALEELKADG 111
Query: 137 CDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIRE 196
DR+++ PLYPQYSA+TTG+ D++ + L R +P +R + YY+ YI ALA SIRE
Sbjct: 112 VDRIVVLPLYPQYSASTTGSYLDELARALKKGRPAPEVRVIRRYYDHPGYIEALADSIRE 171
Query: 197 HFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRF 256
+ P+ LL S H +P Y+ KGDPY C +TARL+ E L D +++ FQSRF
Sbjct: 172 ALAKLGDDPDRLLFSAHGLPERYIKKGDPYPAQCEETARLVAERLGLSD--YRLAFQSRF 229
Query: 257 GRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFT 316
G LEP TD T+E+LA +G+K + ++ GF SD LET YE+ E +E+ GGE +
Sbjct: 230 GPEPWLEPYTDDTLEELAKEGVKKVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYR 289
Query: 317 QVPCLNSSNLSIDLLEKITRREL 339
++PCLN S I+ L + R L
Sbjct: 290 RIPCLNDSPAFIEALADLVREHL 312
>gnl|CDD|30624 COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme
metabolism].
Length = 320
Score = 342 bits (879), Expect = 8e-95
Identities = 134/328 (40%), Positives = 192/328 (58%), Gaps = 8/328 (2%)
Query: 14 VKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSK 73
+K K VLL+NLG P+ + +R YL+ FL D+RV+ELP W P L G IL R K
Sbjct: 1 MKMKKTAVLLLNLGGPETLE--DVRPYLKNFLSDRRVIELPRPLWYP-LAGIILPLRLKK 57
Query: 74 IKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLR 133
+ Y I +S L TR QA L +RL+ V AMRYG P ++E + L+
Sbjct: 58 VAKNYESIGG----KSPLNVITRAQAAALEERLDL-PDFKVYLAMRYGPPFIEEAVEELK 112
Query: 134 EEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQS 193
++G +R+++ PLYPQYS++TTG+ D++ + L +R P + T+P YY++ YI ALA S
Sbjct: 113 KDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS 172
Query: 194 IREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ 253
IRE ++LL S H +P Y+ +GDPY C +T RL+ E L P++ + + FQ
Sbjct: 173 IREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQ 232
Query: 254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE 313
SRFG L+P TD +E+L G+K + ++ GF SD LET YEI HE +E+ GG+
Sbjct: 233 SRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGK 292
Query: 314 KFTQVPCLNSSNLSIDLLEKITRRELMG 341
K+ ++PCLN S ID L + R L
Sbjct: 293 KYVRIPCLNDSPEFIDALADLVRELLNE 320
>gnl|CDD|48638 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus..
Length = 159
Score = 171 bits (435), Expect = 2e-43
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 8/166 (4%)
Query: 19 IGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAY 78
VLLVNLG P+ + +R +L+ FL D+RV+ELP PIL G IL RP K+ Y
Sbjct: 1 TAVLLVNLGGPESLED--VRPFLKNFLSDRRVIELPRPLR-PILAGIILPRRPPKVAKNY 57
Query: 79 AKIWNTAKNESILRTHTRDQATNLAKRLESISS-IVVDWAMRYGKPSVKEIINNLREEGC 137
KI S L TR QA L K L+ + V AMRYG PS++E + L+ +G
Sbjct: 58 KKIGG----GSPLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGV 113
Query: 138 DRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYED 183
DR+++ PLYPQYSA+TTG+ D+V + L +R +P LR + +Y+
Sbjct: 114 DRIVVLPLYPQYSASTTGSYLDEVERALKKLRPAPELRVIRSFYDH 159
>gnl|CDD|73203 cd00419, Ferrochelatase_C, Ferrochelatase, C-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus..
Length = 135
Score = 161 bits (408), Expect = 3e-40
Identities = 60/135 (44%), Positives = 84/135 (62%)
Query: 188 SALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDR 247
ALA IRE + + LL S H +PV + KGDPY C +TARL+ E L P D
Sbjct: 1 EALADHIREALAELPREKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDE 60
Query: 248 FKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIF 307
+++ +QSRFG + LEP TD +E+LA +G+K++ ++ GF SD LET YE+ E +E+
Sbjct: 61 YELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELA 120
Query: 308 VNGGGEKFTQVPCLN 322
GGE + +VPCLN
Sbjct: 121 EEAGGENYRRVPCLN 135
Score = 28.6 bits (64), Expect = 2.5
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 94 HTRDQATNLAKRLESISS-IVVDWAMRYG-----KPSVKEIINNLREEGCDRLLIFP 144
+ A +A+RL + + R+G +PS + + L +EG +++ P
Sbjct: 42 QCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVP 98
>gnl|CDD|36535 KOG1321, KOG1321, KOG1321, Protoheme ferro-lyase (ferrochelatase)
[Coenzyme transport and metabolism].
Length = 395
Score = 149 bits (377), Expect = 1e-36
Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 33/340 (9%)
Query: 9 RNHPKVKFGKIGVLLVNLGTP----DGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFG 64
+ K K G+LL+N+G P D DF L D ++ LP++ + L
Sbjct: 29 SSSVAQKKPKTGILLLNMGGPETLDDVQDF------LYRLFADPDIIPLPAFLQKT-LAK 81
Query: 65 YILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDW----AMRY 120
+I R K++ Y +I S +R T QA + K L+ RY
Sbjct: 82 FIAKRRTPKVQEQYREI----GGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRY 137
Query: 121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIH------MRWSPSL 174
P +E + ++++G R + F YPQYS +T+G++ ++++++ ++WS
Sbjct: 138 AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDIKWS--- 194
Query: 175 RTVPPYYEDSDYISALAQSIRE---HFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCH 231
+ + I A A++I + F ++L S H +P+S + GDPY
Sbjct: 195 -IIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVNAGDPYPAEIA 253
Query: 232 KTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSD 291
T L+ E L + + +++ +QS+ G + L P TD+ +E L G+K+L ++ F S+
Sbjct: 254 ATVDLIMEELKYKNP-YRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSE 312
Query: 292 CLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLL 331
+ET +EI E E + G E + +V LN + I+ L
Sbjct: 313 HIETLHEIDIEYIEEALKKGVENWKRVESLNGNPTFIEGL 352
>gnl|CDD|48637 cd03409, Chelatase_Class_II, Class II Chelatase: a family of
ATP-independent monomeric or homodimeric enzymes that
catalyze the insertion of metal into protoporphyrin
rings. This family includes protoporphyrin IX
ferrochelatase (HemH), sirohydrochlorin ferrochelatase
(SirB) and the cobaltochelatases, CbiK and CbiX. HemH
and SirB are involved in heme and siroheme biosynthesis,
respectively, while the cobaltochelatases are associated
with cobalamin biosynthesis. Excluded from this family
are the ATP-dependent heterotrimeric chelatases (class
I) and the multifunctional homodimeric enzymes with
dehydrogenase and chelatase activities (class III)..
Length = 101
Score = 34.5 bits (79), Expect = 0.039
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 94 HTRDQATNLAKRL-ESISSIVVDWAMRYG-KPSVKEIINNLREEGCDRLLIFPLYPQY 149
+ A L ES+ + G P +E I L EEG R++I PL P
Sbjct: 14 PYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVS 71
>gnl|CDD|32321 COG2138, COG2138, Uncharacterized conserved protein [Function
unknown].
Length = 245
Score = 33.9 bits (77), Expect = 0.074
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 94 HTRDQATNLAKRL-ESISSIVVDWA-MRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSA 151
R+ A +A RL E V A + +PS++E + L G DR+++ PL+
Sbjct: 16 RGREVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLF----L 71
Query: 152 ATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVS 211
A + + EL R + + P + L Q + + E +++
Sbjct: 72 AAGYHTKRDIPAELGLARQAHPQVDLSPLGTHPAVLDLLGQRLEDAGADEADDAERVVLE 131
>gnl|CDD|110864 pfam01903, CbiX, CbiX. The function of CbiX is uncertain, however
it is found in cobalamin biosynthesis operons and so may
have a related function. Some CbiX proteins contain a
striking histidine-rich region at their C-terminus,
which suggests that it might be involved in metal
chelation.
Length = 106
Score = 31.5 bits (72), Expect = 0.34
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 122 KPSVKEIINNLREEGCDRLLIFPL 145
+PS+ E + L +G R+++ PL
Sbjct: 37 EPSLPEALRELVAQGARRIVVVPL 60
>gnl|CDD|48643 cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), N-terminal
domain. SirB catalyzes the ferro-chelation of
sirohydrochlorin to siroheme, the prosthetic group of
sulfite and nitrite reductases. CbiX is a
cobaltochelatase, responsible for the chelation of Co2+
into sirohydrochlorin, an important step in the vitamin
B12 biosynthetic pathway. CbiX often contains a
C-terminal histidine-rich region that may be important
for metal delivery and/or storage, and may also contain
an iron-sulfur center. Both are found in a wide range of
bacteria. This subgroup also contains single domain
proteins from archaea and bacteria which may represent
the ancestral form of class II chelatases before domain
duplication occurred..
Length = 101
Score = 31.4 bits (71), Expect = 0.41
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 90 ILRTH-TRDQATN-----LAKRL-ESISSIVVDWA-MRYGKPSVKEIINNLREEGCDRLL 141
+L H +RD LA+RL E + V+ A + +PS+ E ++ L +G R++
Sbjct: 3 LLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIV 62
Query: 142 IFPL 145
+ PL
Sbjct: 63 VVPL 66
>gnl|CDD|144444 pfam00850, Hist_deacetyl, Histone deacetylase domain. Histones can
be reversibly acetylated on several lysine residues.
Regulation of transcription is caused in part by this
mechanism. Histone deacetylases catalyse the removal of
the acetyl group. Histone deacetylases are related to
other proteins.
Length = 302
Score = 30.3 bits (69), Expect = 0.87
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 20/73 (27%)
Query: 178 PPYYEDSDYISALAQSIREHFESIQWTPEMLLVSF----HQMPVSYLLKGDPYGCHCHKT 233
PP D +Y++A + + Q P+++LVS H GDP G T
Sbjct: 207 PPGTGDEEYLAAFEEILLPLLREFQ--PDLILVSAGFDAH--------AGDPLGGLNLTT 256
Query: 234 A------RLLKEF 240
RLL E
Sbjct: 257 EGYAERTRLLLEL 269
>gnl|CDD|30934 COG0589, UspA, Universal stress protein UspA and related
nucleotide-binding proteins [Signal transduction
mechanisms].
Length = 154
Score = 29.2 bits (64), Expect = 1.8
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 48 KRVVELPSWQWRPILFGYIL-NFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRL 106
+ V L P++ ++ P+ + +E L +
Sbjct: 24 EEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83
Query: 107 ESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLI 142
E+ VV+ + G PS +EI+ EE D +++
Sbjct: 84 EAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVV 119
>gnl|CDD|34759 COG5158, SEC1, Proteins involved in synaptic transmission and
general secretion, Sec1 family [Intracellular
trafficking and secretion].
Length = 582
Score = 28.8 bits (64), Expect = 2.1
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 107 ESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI 166
E IS + + +R K ++ I+ +L + P Y Y + T + + + L
Sbjct: 63 EPISDLPAIYFVRPTKENIDLILEDLEQWD-------PFYLNYHISFLNTVTESLLELLA 115
Query: 167 HMRWSPSLRTVPPYYED-----SDYISALAQSIREHFESIQWTPEMLL 209
+ +V Y D SD S S+ T E L+
Sbjct: 116 ESGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLES-SLPSTTEALI 162
>gnl|CDD|37862 KOG2651, KOG2651, KOG2651, rRNA adenine N-6-methyltransferase [RNA
processing and modification].
Length = 476
Score = 28.0 bits (62), Expect = 3.8
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 19/112 (16%)
Query: 21 VLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWR----PILFGYILNFRPSKIKH 76
+ + G P D R L+ FLL + R ++ N S
Sbjct: 64 LATMPSGMPGEGDVVRYRAVLKLFLLALKSTACALAFTRMQGIQTPSEFLENPSQS---- 119
Query: 77 AYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEI 128
++ ++ R H R + + +RL + S + D+ G V ++
Sbjct: 120 --------SQLTALFRKHVRPKKQHEIRRLSELVSSISDF---TGIDQVVDV 160
>gnl|CDD|36142 KOG0924, KOG0924, KOG0924, mRNA splicing factor ATP-dependent RNA
helicase [RNA processing and modification].
Length = 1042
Score = 27.7 bits (61), Expect = 5.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 124 SVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQEL 165
+KE + L L + P+Y Q A Q K+FQ+
Sbjct: 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADL----QAKIFQKA 619
>gnl|CDD|38639 KOG3429, KOG3429, KOG3429, Predicted peptidyl-tRNA hydrolase
[Translation, ribosomal structure and biogenesis].
Length = 172
Score = 26.9 bits (59), Expect = 8.1
Identities = 14/62 (22%), Positives = 20/62 (32%)
Query: 73 KIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNL 132
K+ N I TR Q N+A LE + I+ +E I +
Sbjct: 83 KLLTTEKNRINKDGELVIYSDKTRSQHKNIADCLEKLRDIIRAAEQTPPVDPTEETIKKI 142
Query: 133 RE 134
R
Sbjct: 143 RI 144
>gnl|CDD|38895 KOG3691, KOG3691, KOG3691, Exocyst complex subunit Sec8
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 982
Score = 26.9 bits (59), Expect = 9.5
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
Query: 232 KTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT-PGFSS 290
+ LL + D IC + G ++ + K D S + P + +
Sbjct: 605 LSDYLLNMVCNHLSDYLDICRAALRGIVQHVSEVKRKISVAWLKDDDISRQLKKLPNWKN 664
Query: 291 DCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI 343
LE E+ E +E F+ G + L SNL D I+ +++ +
Sbjct: 665 PSLEGQNELCREEEESFLQAGDRNIKESELLI-SNLGTDSQLSISVSDILNDM 716
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.138 0.432
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,432,055
Number of extensions: 238390
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 22
Length of query: 343
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 248
Effective length of database: 4,210,882
Effective search space: 1044298736
Effective search space used: 1044298736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)