RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >gnl|CDD|178811 PRK00035, hemH, ferrochelatase; Reviewed. Length = 333 Score = 406 bits (1046), Expect = e-114 Identities = 137/330 (41%), Positives = 189/330 (57%), Gaps = 9/330 (2%) Query: 17 GKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKH 76 K VLL+NLG P+ + +R +L+ FL D+RV++LP W+P+L G IL R K+ Sbjct: 4 PKDAVLLLNLGGPETPE--DVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAK 61 Query: 77 AYAKIWNTAKNESILRTHTRDQATNLAKRLESIS-SIVVDWAMRYGKPSVKEIINNLREE 135 YA I S L TR QA L L + + V MRY PS++E + L+ + Sbjct: 62 HYASIGG----GSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKAD 117 Query: 136 GCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIR 195 G DR+++ PLYPQYS +TT + + + + L +R P +R + YY+ YI ALA+SIR Sbjct: 118 GVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIR 177 Query: 196 EHFES--IQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ 253 E P+ LL S H +P Y+ KGDPY C +TARLL E L PD+ + + +Q Sbjct: 178 EALAKHGEDPEPDRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQ 237 Query: 254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE 313 SRFG LEP TD T+E+LA G+K + ++ PGF SD LET EI E +EI GGE Sbjct: 238 SRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGE 297 Query: 314 KFTQVPCLNSSNLSIDLLEKITRRELMGWI 343 +F ++PCLN S I+ L + R L GW Sbjct: 298 EFRRIPCLNDSPEFIEALADLVRENLQGWP 327 >gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase. Length = 485 Score = 295 bits (758), Expect = 7e-81 Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 21/332 (6%) Query: 10 NHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPS--WQWRPILFGYIL 67 +HPKV K+GVLL+NLG P+ D ++ +L D ++ LP + L +I Sbjct: 81 DHPKVSEEKVGVLLLNLGGPETLD--DVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFIS 138 Query: 68 NFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESIS-SIVVDWAMRYGKPSVK 126 N R K K YA I S LR T +QA LAK LE+ + V MRY P + Sbjct: 139 NLRAPKSKEGYASI----GGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTE 194 Query: 127 EIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSL-----RTVPPYY 181 E I+ ++ +G +L++ PLYPQ+S +T+G++ ++ + + R L +P +Y Sbjct: 195 EAIDQIKADGITKLVVLPLYPQFSISTSGSSL-RLLESI--FREDEYLVNMQHTVIPSWY 251 Query: 182 EDSDYISALAQSIREHFESI-QWTPEMLLVSFHQMPVSYLL-KGDPYGCHCHKTARLLKE 239 + Y+ A+A I++ + S H +PVSY+ GDPY + L+ E Sbjct: 252 QREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIME 311 Query: 240 FLSW--PDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSY 297 L +R + +QSR G ++ L+P TD+T+ +L G+KSL + F S+ +ET Sbjct: 312 ELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLE 371 Query: 298 EIAHEAKEIFVNGGGEKFTQVPCLNSSNLSID 329 EI E +E+ + G E + +VP L I Sbjct: 372 EIDMEYRELALESGIENWGRVPALGCEPTFIS 403 >gnl|CDD|161712 TIGR00109, hemH, ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer. Length = 322 Score = 251 bits (644), Expect = 1e-67 Identities = 113/319 (35%), Positives = 181/319 (56%), Gaps = 9/319 (2%) Query: 15 KFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKI 74 K K GVLL+NLG PD + + R+L++ D R++++ +WR L IL R KI Sbjct: 2 KRKKTGVLLMNLGGPDKLE--EVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKI 59 Query: 75 KHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLRE 134 Y I S L T QA L KRL + V AMRYG+P +E + L + Sbjct: 60 AKNYEAIGGG----SPLLQITEQQAHALEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLK 115 Query: 135 EGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR-WSPSLRTVPPYYEDSDYISALAQS 193 +G +R ++ PLYP +S++TTG++ +++ + L +R P++ + +Y++ YI ALA S Sbjct: 116 DGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADS 175 Query: 194 IREHFESI-QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF 252 I+E S + +LL S H +P SY+ +GDPY C T RL+ E L +P+ +++ + Sbjct: 176 IKETLASFPEPDNAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPN-EYRLTW 234 Query: 253 QSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGG 312 QSR G L P T++ +EKL G++ + ++ GF++D LET YEI E +E+ + GG Sbjct: 235 QSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGG 294 Query: 313 EKFTQVPCLNSSNLSIDLL 331 +K+ + P LN+ I+ + Sbjct: 295 DKYQRCPALNAKPEFIEAM 313 >gnl|CDD|183526 PRK12435, PRK12435, ferrochelatase; Provisional. Length = 311 Score = 45.0 bits (107), Expect = 3e-05 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 15/155 (9%) Query: 95 TRDQATNLAKRLESISSIVVDWAMRYG----KPSVKEIINNLREEGCDRLLIFPLYPQYS 150 T +QA L K L + V++ + G +P +++ + + +G + + L P YS Sbjct: 59 TDEQAKALEKALNEVQD-EVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYS 117 Query: 151 AATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPE---- 206 + + +K +E P++ ++ +Y++ +I A I+E F I PE Sbjct: 118 TFSVK-SYNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQI---PEEERE 173 Query: 207 --MLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKE 239 +L+VS H +P + GDPY +TA L+ E Sbjct: 174 KAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAE 208 >gnl|CDD|148850 pfam07477, Glyco_hydro_67C, Glycosyl hydrolase family 67 C-terminus. Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C terminal region of alpha-glucuronidase which is mainly alpha-helical. It wraps around the catalytic domain (pfam07488), making additional interactions both with the N-terminal domain (pfam03648) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer. Length = 225 Score = 33.7 bits (78), Expect = 0.077 Identities = 11/39 (28%), Positives = 22/39 (56%) Query: 184 SDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLK 222 + Y A + + +E ++ P+ LL+ FH +P ++ LK Sbjct: 108 TGYTGQYAPEVAKMYEDLETCPDELLLWFHHVPYTHRLK 146 >gnl|CDD|180008 PRK05312, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional. Length = 336 Score = 29.1 bits (66), Expect = 1.9 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 143 FPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVP 178 FP + ++ A G A K Q + M P LR VP Sbjct: 135 FPGHTEFLAELAGVATGKPVQP-VMMLAGPQLRVVP 169 >gnl|CDD|179168 PRK00923, PRK00923, sirohydrochlorin cobaltochelatase; Reviewed. Length = 126 Score = 27.9 bits (63), Expect = 3.7 Identities = 7/29 (24%), Positives = 18/29 (62%) Query: 118 MRYGKPSVKEIINNLREEGCDRLLIFPLY 146 M + +P++ E + L G D++++ P++ Sbjct: 41 MEFNEPTIPEALKKLIGTGADKIIVVPVF 69 >gnl|CDD|165198 PHA02864, PHA02864, hypothetical protein; Provisional. Length = 240 Score = 27.5 bits (61), Expect = 4.8 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 90 ILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREE--GCDRLLIF 143 I+R + + + + K+ SI + D++ +P++KE+I LREE GCD L + Sbjct: 19 IIRKYIKKLSKDEFKQFCSIFMVNADFSFYDKRPNLKEVIKILREEFYGCDLRLFY 74 >gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed. Length = 1176 Score = 27.6 bits (62), Expect = 5.4 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 6/78 (7%) Query: 59 RPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAM 118 R LF +L F I ++ + ++ L KRL I V Sbjct: 284 RVKLFRELLGFEVGSPVFYLRNIVDSYIVDEDSV----EKLVELVKRLGDGGLIFV--PS 337 Query: 119 RYGKPSVKEIINNLREEG 136 GK +E+ L + G Sbjct: 338 DKGKEYAEELAEYLEDLG 355 >gnl|CDD|185173 PRK15266, PRK15266, subtilase cytotoxin subunit B; Provisional. Length = 135 Score = 27.2 bits (60), Expect = 6.7 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 170 WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSF 212 W+PS + + + + Y + QS+R H + WT + + +F Sbjct: 76 WAPSFKEL---LDQARYFYSTGQSVRIHVQKNIWTYPLFVNTF 115 >gnl|CDD|185500 PTZ00175, PTZ00175, diphthine synthase; Provisional. Length = 270 Score = 27.2 bits (61), Expect = 6.8 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%) Query: 106 LESISSIVVDWAMR-----YGKPSVKEIINNLREEGCDRLL 141 LES +SI+++ YGKP V E + EEGCD +L Sbjct: 32 LESYTSILINSNKEKLEEFYGKP-VIEADREMVEEGCDEIL 71 >gnl|CDD|151380 pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia. Length = 364 Score = 27.0 bits (60), Expect = 7.1 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Query: 165 LIHMRWSPSLRTVPPYYEDSDYIS---ALAQSIREH 197 L+H SP L YY D D + AL ++ R H Sbjct: 297 LVHN--SPLLGDAGYYYPDFDIQAGARALLRAFRHH 330 >gnl|CDD|183013 PRK11173, PRK11173, two-component response regulator; Provisional. Length = 237 Score = 26.9 bits (60), Expect = 7.3 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%) Query: 194 IREHFESIQWTPEMLLVSFH 213 IR+HFES TPE ++ + H Sbjct: 208 IRKHFESTPDTPE-IIATIH 226 >gnl|CDD|183187 PRK11544, hycI, hydrogenase 3 maturation protease; Provisional. Length = 156 Score = 26.9 bits (60), Expect = 8.0 Identities = 7/17 (41%), Positives = 13/17 (76%) Query: 206 EMLLVSFHQMPVSYLLK 222 EM +++ H MP++YL+ Sbjct: 83 EMFMMTTHNMPLNYLID 99 >gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 Score = 26.6 bits (59), Expect = 9.3 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Query: 87 NESIL----RTHTRDQATNLAKRLESISSIVVDWAMRYGKP-----SVKEIINNLREEGC 137 ++ +L R HT + ++L I V + G P +E + L+E G Sbjct: 122 SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGP 181 Query: 138 DRLLIFPLYPQ 148 DR+ IFPL P+ Sbjct: 182 DRVSIFPLSPR 192 >gnl|CDD|180639 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated. Length = 306 Score = 26.6 bits (60), Expect = 9.6 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 9/32 (28%) Query: 276 DGIKSLAIITPGFSSDCLE-----TSYEIAHE 302 DG+ + TP +S LE T +A + Sbjct: 204 DGV----LYTPPLTSSILEGITRDTVITLAKD 231 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.138 0.432 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,768,528 Number of extensions: 369907 Number of successful extensions: 784 Number of sequences better than 10.0: 1 Number of HSP's gapped: 763 Number of HSP's successfully gapped: 25 Length of query: 343 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 249 Effective length of database: 3,963,321 Effective search space: 986866929 Effective search space used: 986866929 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.8 bits)