RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
         (343 letters)



>gnl|CDD|178811 PRK00035, hemH, ferrochelatase; Reviewed.
          Length = 333

 Score =  406 bits (1046), Expect = e-114
 Identities = 137/330 (41%), Positives = 189/330 (57%), Gaps = 9/330 (2%)

Query: 17  GKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKH 76
            K  VLL+NLG P+  +   +R +L+ FL D+RV++LP   W+P+L G IL  R  K+  
Sbjct: 4   PKDAVLLLNLGGPETPE--DVRPFLKNFLSDRRVIDLPRPLWQPLLAGIILPERLPKVAK 61

Query: 77  AYAKIWNTAKNESILRTHTRDQATNLAKRLESIS-SIVVDWAMRYGKPSVKEIINNLREE 135
            YA I       S L   TR QA  L   L +    + V   MRY  PS++E +  L+ +
Sbjct: 62  HYASIGG----GSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKAD 117

Query: 136 GCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIR 195
           G DR+++ PLYPQYS +TT +  + + + L  +R  P +R +  YY+   YI ALA+SIR
Sbjct: 118 GVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIR 177

Query: 196 EHFES--IQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQ 253
           E          P+ LL S H +P  Y+ KGDPY   C +TARLL E L  PD+ + + +Q
Sbjct: 178 EALAKHGEDPEPDRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQ 237

Query: 254 SRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGE 313
           SRFG    LEP TD T+E+LA  G+K + ++ PGF SD LET  EI  E +EI    GGE
Sbjct: 238 SRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGE 297

Query: 314 KFTQVPCLNSSNLSIDLLEKITRRELMGWI 343
           +F ++PCLN S   I+ L  + R  L GW 
Sbjct: 298 EFRRIPCLNDSPEFIEALADLVRENLQGWP 327


>gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase.
          Length = 485

 Score =  295 bits (758), Expect = 7e-81
 Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 21/332 (6%)

Query: 10  NHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPS--WQWRPILFGYIL 67
           +HPKV   K+GVLL+NLG P+  D   ++ +L     D  ++ LP      +  L  +I 
Sbjct: 81  DHPKVSEEKVGVLLLNLGGPETLD--DVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFIS 138

Query: 68  NFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESIS-SIVVDWAMRYGKPSVK 126
           N R  K K  YA I       S LR  T +QA  LAK LE+ +    V   MRY  P  +
Sbjct: 139 NLRAPKSKEGYASI----GGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTE 194

Query: 127 EIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSL-----RTVPPYY 181
           E I+ ++ +G  +L++ PLYPQ+S +T+G++  ++ + +   R    L       +P +Y
Sbjct: 195 EAIDQIKADGITKLVVLPLYPQFSISTSGSSL-RLLESI--FREDEYLVNMQHTVIPSWY 251

Query: 182 EDSDYISALAQSIREHFESI-QWTPEMLLVSFHQMPVSYLL-KGDPYGCHCHKTARLLKE 239
           +   Y+ A+A  I++            +  S H +PVSY+   GDPY     +   L+ E
Sbjct: 252 QREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIME 311

Query: 240 FLSW--PDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSY 297
            L      +R  + +QSR G ++ L+P TD+T+ +L   G+KSL  +   F S+ +ET  
Sbjct: 312 ELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLE 371

Query: 298 EIAHEAKEIFVNGGGEKFTQVPCLNSSNLSID 329
           EI  E +E+ +  G E + +VP L      I 
Sbjct: 372 EIDMEYRELALESGIENWGRVPALGCEPTFIS 403


>gnl|CDD|161712 TIGR00109, hemH, ferrochelatase.  Human ferrochelatase, found at
           the mitochondrial inner membrane inner surface, was
           shown in an active recombinant form to be a homodimer.
           This contrasts to an earlier finding by gel filtration
           that overexpressed E. coli ferrochelatase runs as a
           monomer.
          Length = 322

 Score =  251 bits (644), Expect = 1e-67
 Identities = 113/319 (35%), Positives = 181/319 (56%), Gaps = 9/319 (2%)

Query: 15  KFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKI 74
           K  K GVLL+NLG PD  +   + R+L++   D R++++   +WR  L   IL  R  KI
Sbjct: 2   KRKKTGVLLMNLGGPDKLE--EVERFLKQLFADPRIIDISRAKWRKPLAKMILPLRSPKI 59

Query: 75  KHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLRE 134
              Y  I       S L   T  QA  L KRL +     V  AMRYG+P  +E +  L +
Sbjct: 60  AKNYEAIGGG----SPLLQITEQQAHALEKRLPNEIDFKVYIAMRYGEPFTEEAVKELLK 115

Query: 135 EGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR-WSPSLRTVPPYYEDSDYISALAQS 193
           +G +R ++ PLYP +S++TTG++ +++ + L  +R   P++  +  +Y++  YI ALA S
Sbjct: 116 DGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADS 175

Query: 194 IREHFESI-QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF 252
           I+E   S  +    +LL S H +P SY+ +GDPY   C  T RL+ E L +P+  +++ +
Sbjct: 176 IKETLASFPEPDNAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPN-EYRLTW 234

Query: 253 QSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGG 312
           QSR G    L P T++ +EKL   G++ + ++  GF++D LET YEI  E +E+  + GG
Sbjct: 235 QSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGG 294

Query: 313 EKFTQVPCLNSSNLSIDLL 331
           +K+ + P LN+    I+ +
Sbjct: 295 DKYQRCPALNAKPEFIEAM 313


>gnl|CDD|183526 PRK12435, PRK12435, ferrochelatase; Provisional.
          Length = 311

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 15/155 (9%)

Query: 95  TRDQATNLAKRLESISSIVVDWAMRYG----KPSVKEIINNLREEGCDRLLIFPLYPQYS 150
           T +QA  L K L  +    V++ +  G    +P +++ +  +  +G +  +   L P YS
Sbjct: 59  TDEQAKALEKALNEVQD-EVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYS 117

Query: 151 AATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPE---- 206
             +   + +K  +E       P++ ++  +Y++  +I   A  I+E F  I   PE    
Sbjct: 118 TFSVK-SYNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQI---PEEERE 173

Query: 207 --MLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKE 239
             +L+VS H +P   +  GDPY     +TA L+ E
Sbjct: 174 KAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAE 208


>gnl|CDD|148850 pfam07477, Glyco_hydro_67C, Glycosyl hydrolase family 67
           C-terminus.  Alpha-glucuronidases, components of an
           ensemble of enzymes central to the recycling of
           photosynthetic biomass, remove the alpha-1,2 linked
           4-O-methyl glucuronic acid from xylans. This family
           represents the C terminal region of alpha-glucuronidase
           which is mainly alpha-helical. It wraps around the
           catalytic domain (pfam07488), making additional
           interactions both with the N-terminal domain (pfam03648)
           of its parent monomer and also forming the majority of
           the dimer-surface with the equivalent C-terminal domain
           of the other monomer of the dimer.
          Length = 225

 Score = 33.7 bits (78), Expect = 0.077
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 184 SDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLK 222
           + Y    A  + + +E ++  P+ LL+ FH +P ++ LK
Sbjct: 108 TGYTGQYAPEVAKMYEDLETCPDELLLWFHHVPYTHRLK 146


>gnl|CDD|180008 PRK05312, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
           Provisional.
          Length = 336

 Score = 29.1 bits (66), Expect = 1.9
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 143 FPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVP 178
           FP + ++ A   G A  K  Q  + M   P LR VP
Sbjct: 135 FPGHTEFLAELAGVATGKPVQP-VMMLAGPQLRVVP 169


>gnl|CDD|179168 PRK00923, PRK00923, sirohydrochlorin cobaltochelatase; Reviewed.
          Length = 126

 Score = 27.9 bits (63), Expect = 3.7
 Identities = 7/29 (24%), Positives = 18/29 (62%)

Query: 118 MRYGKPSVKEIINNLREEGCDRLLIFPLY 146
           M + +P++ E +  L   G D++++ P++
Sbjct: 41  MEFNEPTIPEALKKLIGTGADKIIVVPVF 69


>gnl|CDD|165198 PHA02864, PHA02864, hypothetical protein; Provisional.
          Length = 240

 Score = 27.5 bits (61), Expect = 4.8
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 90  ILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREE--GCDRLLIF 143
           I+R + +  + +  K+  SI  +  D++    +P++KE+I  LREE  GCD  L +
Sbjct: 19  IIRKYIKKLSKDEFKQFCSIFMVNADFSFYDKRPNLKEVIKILREEFYGCDLRLFY 74


>gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed.
          Length = 1176

 Score = 27.6 bits (62), Expect = 5.4
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 6/78 (7%)

Query: 59  RPILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAM 118
           R  LF  +L F           I ++   +        ++   L KRL     I V    
Sbjct: 284 RVKLFRELLGFEVGSPVFYLRNIVDSYIVDEDSV----EKLVELVKRLGDGGLIFV--PS 337

Query: 119 RYGKPSVKEIINNLREEG 136
             GK   +E+   L + G
Sbjct: 338 DKGKEYAEELAEYLEDLG 355


>gnl|CDD|185173 PRK15266, PRK15266, subtilase cytotoxin subunit B; Provisional.
          Length = 135

 Score = 27.2 bits (60), Expect = 6.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 170 WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSF 212
           W+PS + +    + + Y  +  QS+R H +   WT  + + +F
Sbjct: 76  WAPSFKEL---LDQARYFYSTGQSVRIHVQKNIWTYPLFVNTF 115


>gnl|CDD|185500 PTZ00175, PTZ00175, diphthine synthase; Provisional.
          Length = 270

 Score = 27.2 bits (61), Expect = 6.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 106 LESISSIVVDWAMR-----YGKPSVKEIINNLREEGCDRLL 141
           LES +SI+++         YGKP V E    + EEGCD +L
Sbjct: 32  LESYTSILINSNKEKLEEFYGKP-VIEADREMVEEGCDEIL 71


>gnl|CDD|151380 pfam10933, DUF2827, Protein of unknown function (DUF2827).  This is
           a family of uncharacterized proteins found in
           Burkholderia.
          Length = 364

 Score = 27.0 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 165 LIHMRWSPSLRTVPPYYEDSDYIS---ALAQSIREH 197
           L+H   SP L     YY D D  +   AL ++ R H
Sbjct: 297 LVHN--SPLLGDAGYYYPDFDIQAGARALLRAFRHH 330


>gnl|CDD|183013 PRK11173, PRK11173, two-component response regulator; Provisional.
          Length = 237

 Score = 26.9 bits (60), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 194 IREHFESIQWTPEMLLVSFH 213
           IR+HFES   TPE ++ + H
Sbjct: 208 IRKHFESTPDTPE-IIATIH 226


>gnl|CDD|183187 PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.
          Length = 156

 Score = 26.9 bits (60), Expect = 8.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 206 EMLLVSFHQMPVSYLLK 222
           EM +++ H MP++YL+ 
Sbjct: 83  EMFMMTTHNMPLNYLID 99


>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
           This superfamily contains MoaA, NifB, PqqE,
           coproporphyrinogen III oxidase, biotin synthase and MiaB
           families, and includes a representative in the
           eukaryotic elongator subunit, Elp-3. Some members of the
           family are methyltransferases.
          Length = 216

 Score = 26.6 bits (59), Expect = 9.3
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 87  NESIL----RTHTRDQATNLAKRLESISSIVVDWAMRYGKP-----SVKEIINNLREEGC 137
           ++ +L    R HT +      ++L     I V   +  G P       +E +  L+E G 
Sbjct: 122 SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGP 181

Query: 138 DRLLIFPLYPQ 148
           DR+ IFPL P+
Sbjct: 182 DRVSIFPLSPR 192


>gnl|CDD|180639 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
           Validated.
          Length = 306

 Score = 26.6 bits (60), Expect = 9.6
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 9/32 (28%)

Query: 276 DGIKSLAIITPGFSSDCLE-----TSYEIAHE 302
           DG+    + TP  +S  LE     T   +A +
Sbjct: 204 DGV----LYTPPLTSSILEGITRDTVITLAKD 231


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,768,528
Number of extensions: 369907
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 25
Length of query: 343
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 249
Effective length of database: 3,963,321
Effective search space: 986866929
Effective search space used: 986866929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)