RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
(343 letters)
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} (A:170-331)
Length = 162
Score = 160 bits (407), Expect = 2e-40
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 7/163 (4%)
Query: 183 DSDYISALAQSIREHFESI---QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKE 239
+ I A +++I + + +LL S H +P+ + GD Y T + +
Sbjct: 2 NEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQ 61
Query: 240 FLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEI 299
L + + +++ +QS+ G L T + E L + L I F+SD +ET +EI
Sbjct: 62 KLKFKNP-YRLVWQSQVGPKPWLGAQTAEIAEFLGP-KVDGLMFIPIAFTSDHIETLHEI 119
Query: 300 AHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGW 342
+KF + LN + I+ + + + L
Sbjct: 120 DLGVIGES--EYKDKFKRCESLNGNQTFIEGMADLVKSHLQSN 160
Score = 41.8 bits (98), Expect = 1e-04
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 94 HTRDQATNLAKRLESISSIVVDWAMRYG-----KPSVKEIINNLREEGCDRLLIFPLYPQ 148
N+ ++L+ + + W + G EI L D L+ P
Sbjct: 51 EVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAEFLGP-KVDGLMFIP--IA 107
Query: 149 YSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFES 200
+++ T + + + + + +I +A ++ H +S
Sbjct: 108 FTSDHIETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKSHLQS 159
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S,
disease mutation, heme biosynthesis, iron, iron-sulfur,
lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A
{Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A*
3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A*
2pnj_A* 2po5_A* 2po7_A* (A:165-307)
Length = 143
Score = 157 bits (398), Expect = 2e-39
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 185 DYISALAQSIREHFESI---QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFL 241
I A I + + + + ++L S H +P+S + +GDPY T + + E L
Sbjct: 4 LLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERL 63
Query: 242 SWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAH 301
+ + +++ +QS+ G + L P TD++++ L G K++ ++ F+SD +ET YE+
Sbjct: 64 EYCN-PYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDI 122
Query: 302 EAKEIFV-NGGGEKFTQVPCL 321
E ++ G E + L
Sbjct: 123 EYSQVLAKECGVENIRRAESL 143
Score = 28.3 bits (63), Expect = 1.5
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 92 RTHTRDQATNLAKRLESISSIVVDWAMRYG-----KPSVKEIINNLREEGCDRLLIFPL 145
+ +RLE + + W + G P E I L E G +L+ P+
Sbjct: 49 PQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPI 107
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S,
disease mutation, heme biosynthesis, iron, iron-sulfur,
lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A
{Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A*
3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A*
2pnj_A* 2po5_A* 2po7_A* (A:1-164,A:308-359)
Length = 216
Score = 156 bits (395), Expect = 4e-39
Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 17/201 (8%)
Query: 17 GKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKH 76
K G+L++N+G P+ + +L LD+ ++ LP + L +I R KI+
Sbjct: 3 PKTGILMLNMGGPETLGD--VHDFLLRLFLDRDLMTLP---IQNKLAPFIAKRRTPKIQE 57
Query: 77 AYAKIWNTAKNESILRTHTRDQATNLAKRLESISS----IVVDWAMRYGKPSVKEIINNL 132
Y +I S ++ T Q + K L+ +S RY P +E I +
Sbjct: 58 QYRRIGG----GSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEM 113
Query: 133 REEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLR--TVPPYYEDSD-YISA 189
+G +R + F YPQYS +TTG++ + +++ + P+++ T+ + + + A
Sbjct: 114 ERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPNGNPLFSKA 173
Query: 190 LAQSIREHFESIQ-WTPEMLL 209
LA + H +S + + ++ L
Sbjct: 174 LADLVHSHIQSNELCSKQLTL 194
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} (A:1-169)
Length = 169
Score = 156 bits (395), Expect = 5e-39
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 17 GKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKH 76
G++L+N+G P + +L + D ++ + + + YI FR KI+
Sbjct: 6 SPTGIVLMNMGGPSKVEE--TYDFLYQLFADNDLIPISAKYQ-KTIAKYIAKFRTPKIEK 62
Query: 77 AYAKIWNTAKNESILRTHTRDQATNLAKRLESIS----SIVVDWAMRYGKPSVKEIINNL 132
Y +I S +R + QAT + K L+ A RY KP E +
Sbjct: 63 QYREIGG----GSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQM 118
Query: 133 REEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLR--TVPPY 180
++G + + F YP +S +TTG++ +++++++ + S+ + +
Sbjct: 119 LKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSVIDRW 168
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A
{Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A
1ak1_A 1doz_A 2q2n_A* 2h1w_A 2ac2_A 2q3j_A* 2ac4_A
2q2o_A* 1c9e_A* 2c8j_A (A:149-290)
Length = 142
Score = 145 bits (368), Expect = 7e-36
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 182 EDSDYISALAQSIREHFESI---QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLK 238
++ +++ ++E + S+ + ML+VS H +P GDPY H++A+L+
Sbjct: 1 DEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIA 60
Query: 239 EFLSWPDDRFKICFQSRFGR-IKCLEPPTDKTVEKL-AHDGIKSLAIITPGFSSDCLETS 296
E + + +QS L P L G ++ + GF +D LE
Sbjct: 61 EGAGVS--EYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVL 118
Query: 297 YEIAHEAKEIFVNGGGEKF 315
Y+ +E K + + G +
Sbjct: 119 YDNDYECKVVTDDIGASYY 137
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A
{Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A
1ak1_A 1doz_A 2q2n_A* 2h1w_A 2ac2_A 2q3j_A* 2ac4_A
2q2o_A* 1c9e_A* 2c8j_A (A:1-148,A:291-310)
Length = 168
Score = 139 bits (352), Expect = 4e-34
Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 25/184 (13%)
Query: 14 VKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSK 73
+ K+G+L++ GTP + + RY ++
Sbjct: 1 MSRKKMGLLVMAYGTPYKEED--IERYYTHIRRGRKPEP----------------EMLQD 42
Query: 74 IKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESIS---SIVVDWAMRYGKPSVKEIIN 130
+K Y I S L T QA NL + L I + + + +P +++ +
Sbjct: 43 LKDRYEAIGG----ISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVA 98
Query: 131 NLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISAL 190
+ ++G + L P +S + + + +E + Y ++I AL
Sbjct: 99 EMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYNAKPEFIDAL 158
Query: 191 AQSI 194
A +
Sbjct: 159 ATVV 162
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside
hydrolase; 1.48A {Pseudomonas cellulosa} (A:488-708)
Length = 221
Score = 33.9 bits (78), Expect = 0.029
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 184 SDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLK 222
S+ ++ + I + + + PE L++ FH + + ++
Sbjct: 74 SNALAQYPEPIAKAWGDLNSVPEDLILWFHHLSWDHRMQ 112
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A
{Geobacillus stearothermophilus} (A:474-679)
Length = 206
Score = 33.9 bits (78), Expect = 0.031
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 184 SDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLK 222
+ Y + +ES+ P+ LL+ FH +P ++ L
Sbjct: 88 TGYTAQYFPENAAMYESLDTCPDELLLFFHHVPYTHRLH 126
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2,
protein structure initiative; 1.65A {Bacillus halodurans
c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A*
3hk9_A* 2q08_A* 2pnk_A* (A:1-37,A:124-138,A:329-437)
Length = 161
Score = 32.7 bits (74), Expect = 0.062
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 80 KIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDR 139
K+ N N+ + HT + N K E V+ A P + + +R E
Sbjct: 14 KVKNAVNNQPVTDMHTHLFSPNFGKTSEEQVDTVLQLANFMNNPEIINEMTRMRME---- 69
Query: 140 LLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTV 177
+L PQ+S A +V ++LI+ +W S +
Sbjct: 70 MLGTSFIPQHSDA-------RVLEQLIY-KWHHSKSII 99
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(C:359-648)
Length = 290
Score = 31.7 bits (72), Expect = 0.15
Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 44/209 (21%)
Query: 146 YPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTP 205
YPQ+ D+ ++ + P D I L + + E +
Sbjct: 1 YPQFYEHK---LNDRNVASMVKLDKVPV----------MDEIYDLTKELIESCVKNKDLK 47
Query: 206 EMLLVSFHQMPVSYLL-KGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLE- 263
P + K +G KT + +K + ++ + S I +
Sbjct: 48 S---------PCELAIEKTFSFG----KTKKNVKINIFEKEEGKNLLGPSILNEIYVYDG 94
Query: 264 -----PPTDKTVEKLAHDGIKSLAIITPGFSSDC--LET-SYEIAHEAKEIFVNGGGEKF 315
P + V++ D ++ + G ++ ++ ++I + +E FV+ E
Sbjct: 95 NVIGIPESFDGVKEEFKDFLE--KGKSEGVATGIRYIDALCFKITSKLEEAFVSNTTEFK 152
Query: 316 TQVPCLNSS---NLSIDLLEKITRRELMG 341
+VP + S NL ID I +++M
Sbjct: 153 VKVPIVRSLSDINLKID---DIALKQIMS 178
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(D:363-647)
Length = 285
Score = 31.0 bits (70), Expect = 0.23
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 296 SYEIAHEAKEIFVNGGGEKFTQVPCLNSS---NLSIDLLEKITRRELMG 341
++I + +E FV+ E +VP + S NL ID I +++M
Sbjct: 129 CFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKID---DIALKQIMS 174
>1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt
chelatase; vitamin B12, metal ION chelation, cobalt
precorrin; 2.40A {Salmonella typhimurium LT2}
(A:133-238)
Length = 106
Score = 29.7 bits (67), Expect = 0.57
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 95 TRDQATN----LAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLY 146
A L + + P V +I++LR+EG + + PL
Sbjct: 15 ASHHAFAAYACLDHMMTAQRFPA-RVGAVESYPEVDILIDSLRDEGVTGVHLMPLM 69
>1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt
chelatase; vitamin B12, metal ION chelation, cobalt
precorrin; 2.40A {Salmonella typhimurium LT2}
(A:1-132,A:239-264)
Length = 158
Score = 27.1 bits (60), Expect = 3.5
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 110 SSIVVD-WAMRYGK--PSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELI 166
S +++ R G + + + L +G + I L+ G +K+ +E+
Sbjct: 44 SGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLH-----IINGDEYEKIVREVQ 98
Query: 167 HMR-WSPSLRTVPPYYEDSDYISALAQSIREHFE 199
+R L P + L Q++R+
Sbjct: 99 LLRPLFTRLTLGVPLLSSHNDYVQLMQALRQQMP 132
>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper
transport, nucleotide binding, ATP binding, hydrolase;
NMR {Homo sapiens} (A:)
Length = 165
Score = 26.9 bits (58), Expect = 4.3
Identities = 7/166 (4%), Positives = 28/166 (16%), Gaps = 16/166 (9%)
Query: 120 YGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPP 179
+ P V ++ + +++ + +
Sbjct: 3 HMVPRVMRVLLLGDVATLPLRKVL----AVVGTAEASSEHPLGVAVTKYCKEELGTETLG 58
Query: 180 YYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKE 239
Y D + + +S + + K+
Sbjct: 59 YCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASH-----------LNEAGSLPAEKD 107
Query: 240 FLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIIT 285
+ + + + G ++
Sbjct: 108 AVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQT-AILVA 152
>3iru_A Phoshonoacetaldehyde hydolase like protein;
phosphonoacetaldehyde hydrolase like protein, structural
genomics, PSI-2; 2.30A {Oleispira antarctica}
(A:1-26,A:113-258)
Length = 172
Score = 25.8 bits (56), Expect = 7.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 109 ISSIVVDWAMRYGKPSVKEIINNLREEG 136
+ ++++DWA P KE+ + L +G
Sbjct: 14 VEALILDWAGTTIIPGWKEVFDKLIAQG 41
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.138 0.432
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,810,729
Number of extensions: 132108
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 23
Length of query: 343
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 254
Effective length of database: 1,947,404
Effective search space: 494640616
Effective search space used: 494640616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)