RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
(343 letters)
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 289 bits (741), Expect = 6e-79
Identities = 75/337 (22%), Positives = 147/337 (43%), Gaps = 20/337 (5%)
Query: 15 KFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKI 74
K G++L+N+G P + +L + D ++ + + ++ + YI FR KI
Sbjct: 4 KRSPTGIVLMNMGGPSKVE--ETYDFLYQLFADNDLIPISAK-YQKTIAKYIAKFRTPKI 60
Query: 75 KHAYAKIWNTAKNESILRTHTRDQATNLAKRLESI----SSIVVDWAMRYGKPSVKEIIN 130
+ Y +I S +R + QAT + K L+ + A RY KP E
Sbjct: 61 EKQYREIGG----GSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYK 116
Query: 131 NLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQEL--IHMRWSPSLRTVPPYYEDSDYIS 188
+ ++G + + F YP +S +TTG++ +++++++ + S S + + + I
Sbjct: 117 QMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSVIDRWPTNEGLIK 176
Query: 189 ALAQSIREHFESI---QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPD 245
A +++I + + +LL S H +P+ + GD Y T + + L +
Sbjct: 177 AFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFK- 235
Query: 246 DRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKE 305
+ +++ +QS+ G L T + E L + L I F+SD +ET +EI
Sbjct: 236 NPYRLVWQSQVGPKPWLGAQTAEIAEFLG-PKVDGLMFIPIAFTSDHIETLHEIDLGV-- 292
Query: 306 IFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGW 342
I + +KF + LN + I+ + + + L
Sbjct: 293 IGESEYKDKFKRCESLNGNQTFIEGMADLVKSHLQSN 329
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S, disease
mutation, heme biosynthesis, iron, iron-sulfur, lyase,
membrane, metal-binding; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 2pnj_A*
2po5_A* 2po7_A*
Length = 359
Score = 243 bits (622), Expect = 3e-65
Identities = 80/335 (23%), Positives = 151/335 (45%), Gaps = 20/335 (5%)
Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
K G+L++N+G P+ + +L LD+ ++ LP + L +I R KI+
Sbjct: 4 KTGILMLNMGGPETLG--DVHDFLLRLFLDRDLMTLP---IQNKLAPFIAKRRTPKIQEQ 58
Query: 78 YAKIWNTAKNESILRTHTRDQATNLAKRLESISS----IVVDWAMRYGKPSVKEIINNLR 133
Y +I S ++ T Q + K L+ +S RY P +E I +
Sbjct: 59 YRRIG----GGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEME 114
Query: 134 EEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR--WSPSLRTVPPYYEDSDYISALA 191
+G +R + F YPQYS +TTG++ + +++ + + T+ + I A
Sbjct: 115 RDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFA 174
Query: 192 QSIREHFESIQW---TPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRF 248
I + + + ++L S H +P+S + +GDPY T + + E L + + +
Sbjct: 175 DHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY-CNPY 233
Query: 249 KICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFV 308
++ +QS+ G + L P TD++++ L G K++ ++ F+SD +ET YE+ E ++
Sbjct: 234 RLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLA 293
Query: 309 -NGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGW 342
G E + LN + L L + +
Sbjct: 294 KECGVENIRRAESLNGNPLFSKALADLVHSHIQSN 328
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus
subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A
1doz_A 2q2n_A* 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A*
1c9e_A* 2c8j_A
Length = 310
Score = 216 bits (551), Expect = 6e-57
Identities = 64/330 (19%), Positives = 130/330 (39%), Gaps = 34/330 (10%)
Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
K+G+L++ GTP + + RY ++ + +K
Sbjct: 5 KMGLLVMAYGTPYKEE--DIERYYTHIRRGRKP---EPEMLQ-------------DLKDR 46
Query: 78 YAKIWNTAKNESILRTHTRDQATNLAKRLESIS---SIVVDWAMRYGKPSVKEIINNLRE 134
Y I S L T QA NL + L I + + + +P +++ + + +
Sbjct: 47 YEAIGG----ISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHK 102
Query: 135 EGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSI 194
+G + L P +S + + + +E ++ +V +Y++ +++ +
Sbjct: 103 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEA-EKLGGLTITSVESWYDEPKFVTYWVDRV 161
Query: 195 REHFESI---QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKIC 251
+E + S+ + ML+VS H +P GDPY H++A+L+ E + +
Sbjct: 162 KETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEG--AGVSEYAVG 219
Query: 252 FQSRFGRIKCLEPP--TDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVN 309
+QS P D T + G ++ + GF +D LE Y+ +E K + +
Sbjct: 220 WQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDD 279
Query: 310 GGGEKFTQVPCLNSSNLSIDLLEKITRREL 339
G + + N+ ID L + ++L
Sbjct: 280 IGA-SYYRPEMPNAKPEFIDALATVVLKKL 308
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural
genomics, chelatase super-family fold, 4Fe-4S
iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Length = 474
Score = 79.7 bits (196), Expect = 9e-16
Identities = 21/233 (9%), Positives = 55/233 (23%), Gaps = 31/233 (13%)
Query: 89 SILRTHTRDQATNLAKRLES------ISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLI 142
S + +A+ L + V +P ++++ LR + +
Sbjct: 13 SHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQV---LRTVAYSDVTV 69
Query: 143 FPLYPQYSAATTGT---------AQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQS 193
P++ T ++ + +R P A+A
Sbjct: 70 VPVFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQ 129
Query: 194 IREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICF- 252
R+ ++ L+ P A+ L+E + +
Sbjct: 130 ARDTLPEGTDPADVTLLLLA---------ARPGNAALETHAQALRERGQFAGVE--VVLE 178
Query: 253 QSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKE 305
+ E + ++ P + + + +
Sbjct: 179 SREALTPESHAASAVPLSEWPSRVEAGQAVLV-PFLTHLGKHAAERLQQALAQ 230
>1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase;
vitamin B12, metal ION chelation, cobalt precorrin;
2.40A {Salmonella typhimurium LT2} SCOP: c.92.1.2
Length = 264
Score = 64.7 bits (157), Expect = 3e-11
Identities = 29/227 (12%), Positives = 65/227 (28%), Gaps = 32/227 (14%)
Query: 112 IVVDWAMRYGK--PSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR 169
I+ R G + + + L +G + I L+ G +K+ +E+ +R
Sbjct: 47 IIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLH-----IINGDEYEKIVREVQLLR 101
Query: 170 -WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGC 228
L P + L Q++R+ S++ E ++ H
Sbjct: 102 PLFTRLTLGVPLLSSHNDYVQLMQALRQQMPSLR-QTEKVVFMGHGAS-------HHAFA 153
Query: 229 HCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGF 288
++ + P D ++ L +G+ + ++ P
Sbjct: 154 AYACLDHMMTAQRFPAR----VGAVES-------YPEVDILIDSLRDEGVTGVHLM-PLM 201
Query: 289 SSDCLETSYEIAHEA----KEIFVNGGGEKFTQVPCLNSSNLSIDLL 331
++A + K F G + L + +
Sbjct: 202 LVAGDHAINDMASDDGDSWKMRFNAAGIPATPWLSGLGENPAIRAMF 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.8 bits (103), Expect = 6e-05
Identities = 73/444 (16%), Positives = 116/444 (26%), Gaps = 202/444 (45%)
Query: 1 MNISSFAPR--NHPKVKFGKIGVLLVNLGTPDGH--------DFF--SLRRYLREFLLDK 48
M+ S P +H ++ VLLV P + F L F D
Sbjct: 1 MDAYSTRPLTLSHGSLEH----VLLV----PTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 49 R---VVELPSWQWRPILF-GYILNF-RPSKIKHAYAKIWNTAKNE---SILRT---HTRD 97
EL F GY+ + PSK+ + ++ N E L H
Sbjct: 53 EPTTPAELVG------KFLGYVSSLVEPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHA-- 103
Query: 98 QATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLRE--EGCDRLLIFPLYPQYS----- 150
LA +L + + KE+I + + P + +
Sbjct: 104 ----LAAKLLQENDTTL--------VKTKELI---KNYITAR-IMAKRPFDKKSNSALFR 147
Query: 151 AATTGTAQ-----------DKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIREHFE 199
A G AQ D F+EL + + T D
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQ----TYHVLVGD---------------- 186
Query: 200 SIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKICFQSRFGR- 258
L+ F +A L E + D K+ F +
Sbjct: 187 ---------LIKF--------------------SAETLSELIRTTLDAEKV-----FTQG 212
Query: 259 ---IKCLE-----PPTDKTVE-----------KLAHDGI--KSLAIITPG-----FS--- 289
++ LE P D + +LAH + K L TPG
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGAT 271
Query: 290 --------------SDCLETSYEIAHEAKEI--FV-----------------------NG 310
+D E+ + +A + F+ N
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 311 GGEKFTQVPCLNSSNLSIDLLEKI 334
G P L+ SNL+ + ++
Sbjct: 332 EG---VPSPMLSISNLTQEQVQDY 352
Score = 39.2 bits (91), Expect = 0.001
Identities = 72/423 (17%), Positives = 119/423 (28%), Gaps = 183/423 (43%)
Query: 37 LRRYLR-EFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA--YAKIW----NTAK--N 87
++ Y+ + + + + LF R +A A I+ NT
Sbjct: 123 IKNYITARIMAKRPFDKKSN----SALF------RAVGEGNAQLVA-IFGGQGNTDDYFE 171
Query: 88 ESILRT--HT-----RDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREE----G 136
E LR T D A+ L + +D + + I+ L
Sbjct: 172 E--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPD 227
Query: 137 CDRLL---I-FPL--------Y----------P----QYSAATTGTAQDKV--------- 161
D LL I PL Y P Y TG +Q V
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 162 ----FQEL----------IHMR---WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWT 204
F I +R P+ ++PP S L S+ E+ E + +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPP--------SILEDSL-ENNEGVP-S 336
Query: 205 PEML--------------------L-------VSFHQMPVSYLLKGDP---YGC--HCHK 232
P ML L +S + ++ G P YG K
Sbjct: 337 P-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 233 --------TARLLKEFLSWP-DDRFKICFQSRFGRI------KCLEPPTDKTVEKLAHDG 277
+R+ P +R K+ F +RF + L P +D + L +
Sbjct: 396 AKAPSGLDQSRI-------PFSER-KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 278 I----KSLAIITPGFSSDCLETSYEIAHEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEK 333
+ K + I P + + G + S ++S +++
Sbjct: 448 VSFNAKDIQI--PVYDT---FD----------------GSDLRVL----SGSISERIVDC 482
Query: 334 ITR 336
I R
Sbjct: 483 IIR 485
Score = 26.8 bits (59), Expect = 6.4
Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 39/114 (34%)
Query: 73 KIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIV----VDWAMRYGKPSVKEI 128
K A +WN A N H +D SI IV V+ + +G K I
Sbjct: 1637 KTSKAAQDVWNRADN------HFKDTYGF------SILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 129 INNLREEGCDRLLIFPLYPQYSAATTGTAQD------KVFQELIHMRWSPSLRT 176
RE YSA T D K+F+E+ S + R+
Sbjct: 1685 ----RE-------------NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus
stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A*
1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Length = 679
Score = 33.6 bits (77), Expect = 0.063
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 184 SDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKG 223
+ Y + +ES+ P+ LL+ FH +P ++ L
Sbjct: 561 TGYTAQYFPENAAMYESLDTCPDELLLFFHHVPYTHRLHS 600
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 29.6 bits (65), Expect = 1.0
Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 24/192 (12%)
Query: 30 DGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKNES 89
D +DF + L+E LL R V + + G W K S
Sbjct: 26 DRYDFMPVAEALQESLLTTRFVLPQAPTRPVTING-----------GYEMPSWYDIKAMS 74
Query: 90 ILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYPQY 149
R+ + ++ AK + + ++ R G + + + + G + Q
Sbjct: 75 PARSISLEELEVSAKMVTDL----IEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQG 130
Query: 150 SAATTGTAQDKVFQELIHMRWSPSLRTVPPY----YEDSDYISALAQSIREHFESIQWTP 205
+ S S + +P D +A+ +S EH +S T
Sbjct: 131 PLGGVIALSTYAPTFGDELELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVT- 189
Query: 206 EMLLVSFHQMPV 217
V++ + P+
Sbjct: 190 ----VTWQEYPM 197
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.7
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 75 KHAYAKIWNTAKNESILRTHTRDQATNLAKR--LE 107
K A K+ ++ L+ + D A LA + +E
Sbjct: 19 KQALKKL------QASLKLYADDSAPALAIKATME 47
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase;
1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2
PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Length = 708
Score = 28.4 bits (63), Expect = 2.3
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 183 DSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKG 223
S+ ++ + I + + + PE L++ FH + + ++
Sbjct: 560 GSNALAQYPEPIAKAWGDLNSVPEDLILWFHHLSWDHRMQS 600
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genomics, PSI-2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 27.8 bits (61), Expect = 3.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 37 LRRYLREFLLDKRVVELPSWQWRPI 61
R + R+ LLDK + + +WQ I
Sbjct: 557 RRNFCRKHLLDKTLPIVATWQLNKI 581
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 26.9 bits (59), Expect = 6.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 296 SYEIAHEAKEIFVNGGGEKFTQVPCLNSS---NLSIDLLEKITRRELMG 341
++I + +E FV+ E +VP + S NL ID I +++M
Sbjct: 491 CFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKID---DIALKQIMS 536
>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit,
transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B
2pmz_B 3hkz_B
Length = 1131
Score = 26.7 bits (58), Expect = 7.1
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 231 HKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITP 286
TA LLK+ L DR I + G I + +K V + D +
Sbjct: 1042 FGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVS 1097
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.138 0.432
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,179,304
Number of extensions: 151762
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 22
Length of query: 343
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 250
Effective length of database: 3,438,538
Effective search space: 859634500
Effective search space used: 859634500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)