RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
(343 letters)
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 359
Score = 242 bits (617), Expect = 4e-65
Identities = 79/335 (23%), Positives = 150/335 (44%), Gaps = 20/335 (5%)
Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
K G+L++N+G P+ + +L LD+ ++ LP + L +I KI+
Sbjct: 4 KTGILMLNMGGPETLG--DVHDFLLRLFLDRDLMTLP---IQNKLAPFIAKRLTPKIQEQ 58
Query: 78 YAKIWNTAKNESILRTHTRDQATNLAKRLESISS----IVVDWAMRYGKPSVKEIINNLR 133
Y +I S ++ T Q + K L+ +S RY P +E I +
Sbjct: 59 YRRIG----GGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEME 114
Query: 134 EEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR--WSPSLRTVPPYYEDSDYISALA 191
+G +R + F YPQYS +TTG++ + +++ + + T+ + I A
Sbjct: 115 RDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFA 174
Query: 192 QSIREHFESIQW---TPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRF 248
I + + + ++L S H +P+S + +GDPY T + + E L + + +
Sbjct: 175 DHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY-CNPY 233
Query: 249 KICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFV 308
++ +QS+ G + L P TD++++ L G K++ ++ F+SD +ET YE+ E ++
Sbjct: 234 RLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLA 293
Query: 309 -NGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGW 342
G E + LN + L L + +
Sbjct: 294 KECGVENIRRAESLNGNPLFSKALADLVHSHIQSN 328
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 356
Score = 236 bits (602), Expect = 2e-63
Identities = 68/331 (20%), Positives = 137/331 (41%), Gaps = 12/331 (3%)
Query: 17 GKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKH 76
G++L+N+G P + +L + D ++ + + ++ + YI FR KI+
Sbjct: 2 SPTGIVLMNMGGPSKVE--ETYDFLYQLFADNDLIPISAK-YQKTIAKYIAKFRTPKIEK 58
Query: 77 AYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEG 136
Y +I + + L K + A RY KP E + ++G
Sbjct: 59 QYREIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDG 118
Query: 137 CDRLLIFPLYPQYSAATTGTAQDKVFQ--ELIHMRWSPSLRTVPPYYEDSDYISALAQSI 194
+ + F YP +S +TTG++ +++++ + + S S + + + I A +++I
Sbjct: 119 VKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSVIDRWPTNEGLIKAFSENI 178
Query: 195 REHFESIQWT---PEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKIC 251
+ + +LL S H +P+ + GD Y T + + L + + +++
Sbjct: 179 TKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKF-KNPYRLV 237
Query: 252 FQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNGG 311
+QS+ G L T + E + L I F+SD +ET +EI I +
Sbjct: 238 WQSQVGPKPWLGAQTAEIAE-FLGPKVDGLMFIPIAFTSDHIETLHEIDLGV--IGESEY 294
Query: 312 GEKFTQVPCLNSSNLSIDLLEKITRRELMGW 342
+KF + LN + I+ + + + L
Sbjct: 295 KDKFKRCESLNGNQTFIEGMADLVKSHLQSN 325
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
[TaxId: 1423]}
Length = 309
Score = 212 bits (541), Expect = 3e-56
Identities = 64/330 (19%), Positives = 131/330 (39%), Gaps = 34/330 (10%)
Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
K+G+L++ GTP + + RY ++ +K
Sbjct: 4 KMGLLVMAYGTPYKEE--DIERYYTHIRRGRKPEP----------------EMLQDLKDR 45
Query: 78 YAKIWNTAKNESILRTHTRDQATNLAKRLESIS---SIVVDWAMRYGKPSVKEIINNLRE 134
Y I S L T QA NL + L I + +++ +P +++ + + +
Sbjct: 46 YEAIGG----ISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHK 101
Query: 135 EGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSI 194
+G + L P +S + + + +E + ++ +V +Y++ +++ +
Sbjct: 102 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGG-LTITSVESWYDEPKFVTYWVDRV 160
Query: 195 REHFESI---QWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEFLSWPDDRFKIC 251
+E + S+ + ML+VS H +P GDPY H++A+L+ E + +
Sbjct: 161 KETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEG--AGVSEYAVG 218
Query: 252 FQSRFGRIKCLEPP--TDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVN 309
+QS P D T + G ++ + GF +D LE Y+ +E K + +
Sbjct: 219 WQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDD 278
Query: 310 GGGEKFTQVPCLNSSNLSIDLLEKITRREL 339
G + + N+ ID L + ++L
Sbjct: 279 IGA-SYYRPEMPNAKPEFIDALATVVLKKL 307
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium
[TaxId: 90371]}
Length = 257
Score = 70.0 bits (171), Expect = 2e-13
Identities = 29/227 (12%), Positives = 62/227 (27%), Gaps = 32/227 (14%)
Query: 112 IVVDWAMRYGK--PSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR 169
I+ R G + + + L +G + I L+ G +K+ +E+ +R
Sbjct: 46 IIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLH-----IINGDEYEKIVREVQLLR 100
Query: 170 -WSPSLRTVPPYYEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGC 228
L P + L Q++R+ S E ++ H
Sbjct: 101 PLFTRLTLGVPLLSSHNDYVQLMQALRQQMPS-LRQTEKVVFMGHGAS-------HHAFA 152
Query: 229 HCHKTARLLKEFLSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGF 288
++ P D ++ L +G+ + ++ P
Sbjct: 153 AYACLDHMMTAQRFPARVGAVES-----------YPEVDILIDSLRDEGVTGVHLM-PLM 200
Query: 289 SSDCLETSYEIAHEA----KEIFVNGGGEKFTQVPCLNSSNLSIDLL 331
++A + K F G + L + +
Sbjct: 201 LVAGDHAINDMASDDGDSWKMRFNAAGIPATPWLSGLGENPAIRAMF 247
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 34.3 bits (79), Expect = 0.014
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 183 DSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKG 223
S+ ++ + I + + + PE L++ FH + + ++
Sbjct: 413 GSNALAQYPEPIAKAWGDLNSVPEDLILWFHHLSWDHRMQS 453
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 33.9 bits (78), Expect = 0.019
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 184 SDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKG 223
+ Y + +ES+ P+ LL+ FH +P ++ L
Sbjct: 419 TGYTAQYFPENAAMYESLDTCPDELLLFFHHVPYTHRLHS 458
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 29.4 bits (65), Expect = 0.44
Identities = 20/159 (12%), Positives = 34/159 (21%), Gaps = 11/159 (6%)
Query: 28 TPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIWNTAKN 87
P+ L RE + V S+ Y+ K A
Sbjct: 60 APNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLR 119
Query: 88 ESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCDRLLIFPLYP 147
S R+ + +V + YG +E + +
Sbjct: 120 HSTTRSLLTRRDVI----------VVASVSAIYGLGDPREYRARNLVVERGKPYPREVLL 169
Query: 148 QYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDY 186
+ D R + + P YE
Sbjct: 170 ERLLELGYQRNDIDLSPG-RFRAKGEVLEIFPAYETEPI 207
>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 218
Score = 26.5 bits (57), Expect = 3.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 30 DGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFG 64
D +DF + L+E LL R V + + G
Sbjct: 26 DRYDFMPVAEALQESLLTTRFVLPQAPTRPVTING 60
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 192
Score = 25.7 bits (56), Expect = 5.2
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 15/116 (12%)
Query: 136 GCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPYYEDSDYISALAQSIR 195
G DR++ + S +V E L P + L
Sbjct: 39 GYDRVMAYRFRHDDS--------GEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNP 90
Query: 196 EHFESIQWTPEMLLVSFHQ------MPVSYLLKGDPYGCHCHKTARL-LKEFLSWP 244
+ M + +SY + HC + ++ +S
Sbjct: 91 IRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSIS 146
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 25.7 bits (56), Expect = 5.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 125 VKEIINNLREEGCDRLLIF 143
V+EII L + G +L I
Sbjct: 23 VEEIICGLIKGGAAKLQII 41
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 25.7 bits (56), Expect = 6.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 119 RYGKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMR 169
RYG ++E++ L EEG +LIF + + G+A D I
Sbjct: 45 RYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAI 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.432
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,383,854
Number of extensions: 67737
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 19
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)