BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus
Liberibacter asiaticus str. psy62]
(343 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
Length = 343
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MNISSFAPRNHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRP 60
MNISSFAPRNHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRP
Sbjct: 1 MNISSFAPRNHPKVKFGKIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRP 60
Query: 61 ILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRY 120
ILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRY
Sbjct: 61 ILFGYILNFRPSKIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRY 120
Query: 121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPY 180
GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPY
Sbjct: 121 GKPSVKEIINNLREEGCDRLLIFPLYPQYSAATTGTAQDKVFQELIHMRWSPSLRTVPPY 180
Query: 181 YEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEF 240
YEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEF
Sbjct: 181 YEDSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPYGCHCHKTARLLKEF 240
Query: 241 LSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA 300
LSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA
Sbjct: 241 LSWPDDRFKICFQSRFGRIKCLEPPTDKTVEKLAHDGIKSLAIITPGFSSDCLETSYEIA 300
Query: 301 HEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI 343
HEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI
Sbjct: 301 HEAKEIFVNGGGEKFTQVPCLNSSNLSIDLLEKITRRELMGWI 343
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 26.2 bits (56), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
+IG L+ LGT G D F + + ++ ++ R +L + PS I +
Sbjct: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
Query: 78 YAKI 81
+ I
Sbjct: 533 FLYI 536
>gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 378
Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 89 SILRTHTRDQATNLAKRLESISSIVVDWA-MRYGKPSVKEIINNLREE 135
S LR ++R +L + ES++ +++ WA + Y + +KEI + + E+
Sbjct: 308 SALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAED 355
>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 285
Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 183 DSDYISALAQSIREHFESIQWTPEMLLVSFHQMPVSYLLKGDPY 226
D I ++ H+ + QW + +L+SF P + G+ Y
Sbjct: 42 DRGIIRIASRDDNGHWNTHQWIKKAILLSFQINPTKIISDGNGY 85
>gi|254780412|ref|YP_003064825.1| hypothetical protein CLIBASIA_01485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 94
Score = 24.6 bits (52), Expect = 2.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 88 ESILRT--HTRDQATNLAKRLESISSIVVD 115
E++ RT H R++ T + KRLE I + D
Sbjct: 54 ENVKRTTSHLREEITAIGKRLEKIEQQLAD 83
>gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 179
Score = 23.1 bits (48), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 23 LVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHAYAKIW 82
+ NLG P G Y R +LL K+ L + + ILF + A +
Sbjct: 22 VTNLG-PMGEVVKVKNGYARNYLLPKKKA-LRANKENKILF------ESQRSVLEAANLE 73
Query: 83 NTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVKEIINNLREEGCD 138
AK E I + +LAK+ S+ D YG S ++I + L EEG D
Sbjct: 74 KKAKYEGI--------SKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121
>gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 23.1 bits (48), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 303 AKEIFVNGGGEKFTQVPCLNSSNLSIDLLEK 333
+K+IF+ GGGE + Q L + L I +EK
Sbjct: 98 SKKIFIIGGGEIYAQTISL-AHTLYITHIEK 127
>gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 73 KIKHAYAKIWNTAKNESILRTHTRDQATNLAKRLESISSIVVDWAMRYGKPSVK 126
+I H++ N A E + + + L +R SIS +D KP+VK
Sbjct: 432 RIAHSFGLHENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQSKPTVK 485
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,830
Number of Sequences: 1233
Number of extensions: 9251
Number of successful extensions: 26
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 8
length of query: 343
length of database: 328,796
effective HSP length: 75
effective length of query: 268
effective length of database: 236,321
effective search space: 63334028
effective search space used: 63334028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)