HHsearch alignment for GI: 254780201 and conserved domain: cd06435
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=96.14 E-value=0.11 Score=30.20 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=98.1
Q ss_pred EEEECC--HHHHHHHHHHHHHCCCC-EEEEEECCC--CH--HHHHHHHHHC-CCCCEEE-EECCCCHHHHHHHHHHCCCC
Q ss_conf 999416--77899999999708998-149997176--52--8999999711-7873899-94566604799998622100
Q gi|254780201|r 154 VVHCYY--QDTWIEISHILLRLNFD-FDLFVTVVE--AN--KDFEQDVLKY-FPSAQLY-VMENKGRDVRPFLYLLELGV 224 (394)
Q Consensus 154 vlHlyY--~DLl~E~~~~L~~ip~~-~DL~ITt~~--~~--~~~~~~~~~~-~~~a~V~-vv~NRGRDI~PfL~~~~~~~ 224 (394)
T Consensus 3 iIPayNE~~~vi~~~l~sl~~~~Yp~~eIiVvdd~stD~t~~~~v~~~~~~~~~~~~~~~~~~~~g~K~~alN~~l~~-~ 81 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER-T 81 (236)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH-C
T ss_conf 983589928999999999995799998799998929981589999999987299679999488899709999999996-4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 27867899973687767777644407899999987479989999999997609976898168765443323455432213
Q gi|254780201|r 225 FDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVY 304 (394)
Q Consensus 225 l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~~~~ 304 (394)
T Consensus 82 ~~~~e~i~~~DaD~~---------------------~-~pd~L~~~v~~f~-~p~vg~v~~~~~~~~~~----~~~~~~~ 134 (236)
T cd06435 82 APDAEIIAVIDADYQ---------------------V-EPDWLKRLVPIFD-DPRVGFVQAPQDYRDGE----ESLFKRM 134 (236)
T ss_pred CCCCEEEEEECCCCC---------------------C-CHHHHHHHHHHHC-CCCEEEEECCEECCCCC----CCHHHHH
T ss_conf 798549999768877---------------------7-8689999998604-98768995561314877----6799999
Q ss_pred HHHH-HHHHHCCCCC-CCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8999-9999748998-8554773770123320988875765882235854468888738999999999999986980335
Q gi|254780201|r 305 RRVI-DLAKRAGFPT-KRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHAVERFFACSVRYTEFSIES 382 (394)
Q Consensus 305 ~~~~-~L~~rlgi~~-~~~~~~FpaGSMFW~R~~AL~pL~~l~l~~DF~~E~g~~DGTlaHAIERl~~~iv~~~gf~i~~ 382 (394)
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGg------f~~~~~~ED~--------dl~~rl~~~G~~~~y 200 (236)
T cd06435 135 CYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGG------WDEWCITEDS--------ELGLRMHEAGYIGVY 200 (236)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEHHHHHHHCC------CCCCCCCCHH--------HHHHHHHHCCCEEEE
T ss_conf 99999999998898885389747666468878899998389------8877757779--------999999985997997
Q ss_pred E
Q ss_conf 2
Q gi|254780201|r 383 V 383 (394)
Q Consensus 383 v 383 (394)
T Consensus 201 ~ 201 (236)
T cd06435 201 V 201 (236)
T ss_pred C
T ss_conf 2