HHsearch alignment for GI: 254780201 and conserved domain: pfam05045
>pfam05045 RgpF Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.
Probab=100.00 E-value=0 Score=519.53 Aligned_cols=228 Identities=30% Similarity=0.443 Sum_probs=199.9
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 0147389999416778999999997089981499971765-28999999711---7873899945666047999986221
Q gi|254780201|r 147 IKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEA-NKDFEQDVLKY---FPSAQLYVMENKGRDVRPFLYLLEL 222 (394)
Q Consensus 147 ~k~kIAVvlHlyY~DLl~E~~~~L~~ip~~~DL~ITt~~~-~~~~~~~~~~~---~~~a~V~vv~NRGRDI~PfL~~~~~ 222 (394)
T Consensus 263 ~~~kIav~~HvyY~DLl~e~l~y~~~ip~~~Dl~ITT~~~ek~~~i~~~l~~~~~~~~~~V~vv~NRGRDv~pfLv~~~~ 342 (498)
T pfam05045 263 DDQKIAVHAHVYYVDMLDEILTAFKNIPFSYDLIITTDTDDKKAEIEEILAKRKGAKNAIVRVVQNRGRDMSPLLISLKD 342 (498)
T ss_pred CCCEEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 57859999995347269999999982898741899859877899999999856677732899905777417889999887
Q ss_pred CCC-CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 002-7867899973687767777644407899999987479989999999997609976898168765443323455432
Q gi|254780201|r 223 GVF-DRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRS 301 (394)
Q Consensus 223 ~~l-~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~~~~~~ 301 (394)
T Consensus 343 ~l~~~~YD~v~hiHtKKS~~~~~--~~G~~wr~~l~~nLlgs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~-~~~~~W~ 419 (498)
T pfam05045 343 ELVDDRYDLVCRFHTKKSPQADF--WAGESFKEELIDNLLKPRGYADNILAMFEQNPSIGLVIPDIVHIRYP-TIGNAWN 419 (498)
T ss_pred HHCCCCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCHHHCCCC-CCCCCCC
T ss_conf 74536774899965574766686--40579999999972198899999999871098636873872312575-4356764
Q ss_pred CCHHHHHHHHHHCCCCCC--CCCCCCCCEEEEEEEHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 213899999997489988--554773770123320988875765882-23585446888873899999999999998698
Q gi|254780201|r 302 EVYRRVIDLAKRAGFPTK--RLHLDFFNGTMFWVKPKCLEPLRNLHL-IGEFEEERNLKDGALEHAVERFFACSVRYTEF 378 (394)
Q Consensus 302 ~~~~~~~~L~~rlgi~~~--~~~~~FpaGSMFW~R~~AL~pL~~l~l-~~DF~~E~g~~DGTlaHAIERl~~~iv~~~gf 378 (394)
T Consensus 420 ~N~~~~~~L~~~lgl~~~~d~~~~~~p~GTMFW~Rp~AL~~L~~l~l~~~DFpeEp~~-DGTLaHAIERli~yia~~~GY 498 (498)
T pfam05045 420 ENAPEMNKLARRMGIKKKFDDNTPVASYGTMFWFRPEALKKLFELEWKWEDFPNEPLP-DNSLLHAIERLLAYAAWDAGY 498 (498)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC
T ss_conf 5679999999984999877756666676549997189989998379980006646897-428999999999999987539