Query gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 394
No_of_seqs 155 out of 190
Neff 5.5
Searched_HMMs 33803
Date Mon May 23 11:21:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780201.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2z86_A Chondroitin synthase; 91.8 0.88 2.6E-05 24.3 12.5 123 140-287 26-154 (295)
2 >3f1y_A Mannosyl-3-phosphoglyc 89.2 1.5 4.5E-05 22.9 7.3 128 136-288 81-219 (387)
3 >1omz_A Alpha-1,4-N-acetylhexo 87.6 1.9 5.7E-05 22.2 10.9 127 136-288 15-145 (293)
4 >3ckj_A Putative uncharacteriz 82.5 3.3 9.9E-05 20.8 8.5 178 138-341 37-228 (329)
5 >2ffu_A Ppgalnact-2, polypepti 58.3 12 0.00037 17.3 14.6 210 105-342 24-252 (370)
6 >1qg8_A Protein (spore coat po 57.2 13 0.00038 17.2 8.6 116 149-289 1-128 (255)
7 >1fo8_A Alpha-1,3-mannosyl-gly 45.1 20 0.00059 16.0 10.0 185 149-389 2-210 (230)
8 >1pjc_A Protein (L-alanine deh 37.9 26 0.00077 15.3 3.4 43 323-366 82-130 (169)
9 >2d7i_A Polypeptide N-acetylga 25.8 42 0.0012 14.1 11.5 127 135-287 42-178 (360)
10 >3cnf_A VP1; cytoplasmic polyh 25.6 32 0.00094 14.8 1.4 32 338-369 40-72 (103)
11 >2dri_A D-ribose-binding prote 24.9 43 0.0013 14.0 6.0 82 148-234 1-89 (139)
12 >2rbg_A Putative uncharacteriz 23.5 46 0.0014 13.8 6.3 105 57-201 8-112 (126)
13 >3gtn_A Glucuronoxylanase XYNC 21.9 50 0.0015 13.6 2.4 139 42-207 87-229 (401)
14 >1ad2_A TL2, ribosomal protein 20.8 40 0.0012 14.2 1.1 57 163-222 28-90 (91)
No 1
>>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* (A:59-353)
Probab=91.85 E-value=0.88 Score=24.32 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=84.1
Q ss_pred CHHHHHHCCCCEEEEEEEC-CHHHHHHHHHHHHHCC--CCEEEEEECC--C-CHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 0110000014738999941-6778999999997089--9814999717--6-5289999997117873899945666047
Q gi|254780201|r 140 PKKSGLTIKSKIAIVVHCY-YQDTWIEISHILLRLN--FDFDLFVTVV--E-ANKDFEQDVLKYFPSAQLYVMENKGRDV 213 (394)
Q Consensus 140 ~~~~~~~~k~kIAVvlHly-Y~DLl~E~~~~L~~ip--~~~DL~ITt~--~-~~~~~~~~~~~~~~~a~V~vv~NRGRDI 213 (394)
.........++|+|++=.| -++.+.++++.+.+-. ..+.++|--+ + ...++..+.....+...+...++.+.=-
T Consensus 26 ~~~~~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (295)
T 2z86_A 26 DYPRKQLIIDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLC 105 (295)
T ss_dssp ------CCCCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHH
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 58766686899899996379989999999999716999985999998989821899999751369969999689985789
Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99998622100278678999736877677776444078999999874799899999999976099768981687
Q gi|254780201|r 214 RPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRR 287 (394)
Q Consensus 214 ~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~ 287 (394)
...-.++. ..+.|+|+.+.+=-.. .++.+..++..|..+|..+++++..
T Consensus 106 ~~~~~~~~---~a~~d~i~~lD~D~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (295)
T 2z86_A 106 AVRNLGLR---AAKYNYVAILDCDMAP----------------------NPLWVQSYMELLAVDDNVALIGPRK 154 (295)
T ss_dssp HHHHHHHH---HCCSSEEEEECTTEEE----------------------CTTHHHHHHHHHHHCTTEEEECCEE
T ss_pred HHHHHHHH---HCCCCEEEEECCCCCC----------------------CHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 99999999---7599989998897244----------------------8139999999998499859998777
No 2
>>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, GDP- mannose; 2.20A {Rubrobacter xylanophilus} (A:)
Probab=89.22 E-value=1.5 Score=22.88 Aligned_cols=128 Identities=12% Similarity=0.038 Sum_probs=78.0
Q ss_pred CCCCCHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHH----CCCCEEEEEECC--C-CHHHHHHHHHHCCCCCEE---E
Q ss_conf 822101100000147389999416-7789999999970----899814999717--6-528999999711787389---9
Q gi|254780201|r 136 RPSSPKKSGLTIKSKIAIVVHCYY-QDTWIEISHILLR----LNFDFDLFVTVV--E-ANKDFEQDVLKYFPSAQL---Y 204 (394)
Q Consensus 136 ~p~~~~~~~~~~k~kIAVvlHlyY-~DLl~E~~~~L~~----ip~~~DL~ITt~--~-~~~~~~~~~~~~~~~a~V---~ 204 (394)
.+..........+.+|.|++=.|= .+.+.++++.+.+ ....+.++|--+ + +..++........+...+ .
T Consensus 81 ~~~~~~~~~~~~~~~iSViIp~yN~~~~l~~~l~sl~~~~~q~~~~~EIIVVDdgStD~t~~i~~~~~~~~~~~~~~~~~ 160 (387)
T 3f1y_A 81 PPEDLARRKRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSG 160 (387)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGG
T ss_pred CHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 85899974124899899996768787799999999999863679982899998959716799999861522566536763
Q ss_pred EECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 94566604799998622100278678999736877677776444078999999874799899999999976099768981
Q gi|254780201|r 205 VMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIG 284 (394)
Q Consensus 205 vv~NRGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~ 284 (394)
..+|.|.- ..+-.++ ...+.|+|+.+.+=-. +-+++.++.++..|.++|+++++.
T Consensus 161 ~~~~~g~~-~a~n~g~---~~a~gd~i~~lD~D~~---------------------~~~~~~l~~l~~~~~~~~~~~~v~ 215 (387)
T 3f1y_A 161 YGDAHGKG-DAMWRAL---SVTRGDLVLYIDADTR---------------------DFRPQLAYGVLGPVLEVPGVRFVK 215 (387)
T ss_dssp GCSCCSHH-HHHHHHT---TTCCSSEEEECCTTCS---------------------SCCTHHHHTTHHHHHHSTTCCEEE
T ss_pred CCCCCCCH-HHHHHHH---HHHCCCCCEEECCCCC---------------------CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 12468823-7750035---5412331214437677---------------------799999999999998489730563
Q ss_pred CCCC
Q ss_conf 6876
Q gi|254780201|r 285 SRRY 288 (394)
Q Consensus 285 p~~~ 288 (394)
....
T Consensus 216 ~~~~ 219 (387)
T 3f1y_A 216 AAYR 219 (387)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 2110
No 3
>>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} (A:)
Probab=87.62 E-value=1.9 Score=22.24 Aligned_cols=127 Identities=7% Similarity=-0.009 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHCCCCEEEEEECCCC---HHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 822101100000147389999416-778999999997089981499971765---2899999971178738999456660
Q gi|254780201|r 136 RPSSPKKSGLTIKSKIAIVVHCYY-QDTWIEISHILLRLNFDFDLFVTVVEA---NKDFEQDVLKYFPSAQLYVMENKGR 211 (394)
Q Consensus 136 ~p~~~~~~~~~~k~kIAVvlHlyY-~DLl~E~~~~L~~ip~~~DL~ITt~~~---~~~~~~~~~~~~~~a~V~vv~NRGR 211 (394)
.+.........-+++|.|++=.|= .+.++++++.+.+-..+...+|-.+.. ..+.........+...+..-+|.|-
T Consensus 15 ~~~~~~~~~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~iiv~d~ss~d~~~~~~~~~~~~~~~~~~~~~~~g~ 94 (293)
T 1omz_A 15 LRREIKSPSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANK 94 (293)
T ss_dssp -----------CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCC
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 23456686768889879999668987999999999981999980999989999987899999747898779996278884
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 47999986221002786789997368776777764440789999998747998999999999760997689816876
Q gi|254780201|r 212 DVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRY 288 (394)
Q Consensus 212 DI~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~ 288 (394)
-.+-- .+ ....+.|+|+.+.+-=. + +++.++.+++.+++++..+++++...
T Consensus 95 ~~~~n-~~---~~~a~~~~i~~lD~D~~---------------------~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 145 (293)
T 1omz_A 95 MRNRL-QV---FPEVETNAVLMVDDDTL---------------------I-SAQDLVFAFSIWQQFPDQIIGFVPRK 145 (293)
T ss_dssp GGGGG-SC---CTTCCSSEEEEECTTEE---------------------E-CHHHHHHHHHHHTTSTTSEEESCEEE
T ss_pred HHHHC-HH---HHHCCCCEEEEECCCCC---------------------C-CHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 77634-40---76568477999868642---------------------1-37899999999997887679643210
No 4
>>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A (A:)
Probab=82.46 E-value=3.3 Score=20.76 Aligned_cols=178 Identities=11% Similarity=-0.054 Sum_probs=94.2
Q ss_pred CCCHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHCC--CCEEEEEECC--CC-HHHHHHHHHHCCCCCEEEE---ECC
Q ss_conf 2101100000147389999416-778999999997089--9814999717--65-2899999971178738999---456
Q gi|254780201|r 138 SSPKKSGLTIKSKIAIVVHCYY-QDTWIEISHILLRLN--FDFDLFVTVV--EA-NKDFEQDVLKYFPSAQLYV---MEN 208 (394)
Q Consensus 138 ~~~~~~~~~~k~kIAVvlHlyY-~DLl~E~~~~L~~ip--~~~DL~ITt~--~~-~~~~~~~~~~~~~~a~V~v---v~N 208 (394)
..+..+.....++|+|++=.|= .+.+.++++.+.+-. ..+.++|--+ ++ ..++..+.....+...+.+ ..|
T Consensus 37 ~~~~~~~~~~~p~vsIiIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~~ 116 (329)
T 3ckj_A 37 TVAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIR 116 (329)
T ss_dssp CHHHHHHTTTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCC
T ss_pred CHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 84556533379979999826878889999999998515799968999989696348999987232223554157724430
Q ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 66047999986221002786789997368776777764440789999998747998999999999760997689816876
Q gi|254780201|r 209 KGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRY 288 (394)
Q Consensus 209 RGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~ 288 (394)
.|.- +..-.++ ...+.|+++.+.+=-. +-+++.++.++..|+.+|..+++++...
T Consensus 117 ~g~~-~a~n~~~---~~a~~~~i~~~D~Dd~---------------------~~~p~~l~~l~~~~~~~~~~~~~~~~~~ 171 (329)
T 3ckj_A 117 PGKG-EALWRSL---AASRGDIVVFVDSDLI---------------------NPHPMFVPWLVGPLLTGDGVHLVKSFYR 171 (329)
T ss_dssp CSHH-HHHHHHH---HHCCCSEEEECCTTEE---------------------SCCTTHHHHHHHHHHSCSSCCEEEEEEE
T ss_pred CHHH-HHHHHHH---HHCCCCCEEEECCCCC---------------------CCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 0499-9999999---9647460699737888---------------------8999999999999973986542201330
Q ss_pred CCCCCCCCCC--CCCCCHH---HHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf 5443323455--4322138---999999974899885547737701233209888757
Q gi|254780201|r 289 RRYKRWSFFA--KRSEVYR---RVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPL 341 (394)
Q Consensus 289 ~~~~~~~~~~--~~~~~~~---~~~~L~~rlgi~~~~~~~~FpaGSMFW~R~~AL~pL 341 (394)
.......... ....... ........... .......++.|+.+-+|.+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~ 228 (329)
T 3ckj_A 172 RPLNVGDAGGGAGATGGGRVTELVARPLLAALR-PELGCILQPLGGEYAATRELLTSV 228 (329)
T ss_dssp CC---------------CHHHHHTHHHHHHHHC-GGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCEEECCCCCEEEEHHHHHHC
T ss_conf 025555445543322221889999999999864-220330015764478749999768
No 5
>>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* (A:1-370)
Probab=58.27 E-value=12 Score=17.29 Aligned_cols=210 Identities=9% Similarity=0.040 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEEECC-HH-HHHHHHHHHHHCCCC---EEE
Q ss_conf 0732687187559999997302664202467822101100000147389999416-77-899999999708998---149
Q gi|254780201|r 105 LRLNRFMSNSRMPFDSEKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYY-QD-TWIEISHILLRLNFD---FDL 179 (394)
Q Consensus 105 LePD~~~G~~yL~a~~~al~~~~~~~~~~~~~p~~~~~~~~~~k~kIAVvlHlyY-~D-Ll~E~~~~L~~ip~~---~DL 179 (394)
+.++..--+++..++...+..... .....+..........-.++|.|++=.|= .+ ++.++++.+.+-..+ +.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~iSIIIp~yN~~e~~l~~~l~Si~~Q~~~~~~~EI 101 (370)
T 2ffu_A 24 SGQDPYARNKFNQVESDKLRMDRA--IPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEI 101 (370)
T ss_dssp TTSCTTTTTSSCHHHHHHSCTTCC--CCCCSCGGGGGCCCCSSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEE
T ss_pred CCHHHHHHHCCHHHHHHHCCCCCC--CCCCCCHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHCCCEE
T ss_conf 124688872601887742456898--888778544136679999972799976758179999999999964935208879
Q ss_pred EEECCCCHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99717652899999971178738999-45666047999986221002786789997368776777764440789999998
Q gi|254780201|r 180 FVTVVEANKDFEQDVLKYFPSAQLYV-MENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFF 258 (394)
Q Consensus 180 ~ITt~~~~~~~~~~~~~~~~~a~V~v-v~NRGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~ 258 (394)
+|-=+-......+.+.+..+...+.. -+|.|.- +++-.+++ ..+.|||+.+.+==-
T Consensus 102 IvVDDgStD~t~~~~~~~~~~~~~i~~~~n~G~~-~a~N~gi~---~a~ge~i~flD~Dd~------------------- 158 (370)
T 2ffu_A 102 ILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLM-RSRVRGAD---AAQAKVLTFLDSHCE------------------- 158 (370)
T ss_dssp EEEECSCSCTHHHHGGGGBTTEEEEECSSCCHHH-HHHHHHHH---HCCSSEEEECCSSEE-------------------
T ss_pred EEEECCCCHHHHHHHHHHCCCEEEEECCCCCCHH-HHHHHHHH---HCCCCEEEEECCCCC-------------------
T ss_conf 9997899756799999628880599788986748-99999888---668988999535303-------------------
Q ss_pred HHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC------------CCCCCC-CHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 74799899999999976099768981687654433234------------554322-13899999997489988554773
Q gi|254780201|r 259 DLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSF------------FAKRSE-VYRRVIDLAKRAGFPTKRLHLDF 325 (394)
Q Consensus 259 ~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~~~~~~~~------------~~~~~~-~~~~~~~L~~rlgi~~~~~~~~F 325 (394)
+ .++.++.+++.|+++|..++++............ ...... ......................+
T Consensus 159 --~-~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (370)
T 2ffu_A 159 --C-NEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPM 235 (370)
T ss_dssp --E-CTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSS
T ss_pred --C-CCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf --0-5018999999986267630122354207987033045544355422243333243443554301234456543553
Q ss_pred CCEEEEEEEHHHHHHHH
Q ss_conf 77012332098887576
Q gi|254780201|r 326 FNGTMFWVKPKCLEPLR 342 (394)
Q Consensus 326 paGSMFW~R~~AL~pL~ 342 (394)
..|+...+|.+++..+-
T Consensus 236 ~~~~~~~~~~~~~~~~~ 252 (370)
T 2ffu_A 236 IAGGLFVMDKFYFEELG 252 (370)
T ss_dssp CCSSSEEEEHHHHHHTT
T ss_pred CCCEEEEEEHHHHHHHC
T ss_conf 12168999999999839
No 6
>>1qg8_A Protein (spore coat polysaccharide biosynthesis protein SPSA); glycosyltransferase; 1.50A {Bacillus subtilis} (A:)
Probab=57.18 E-value=13 Score=17.18 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHH---HHCCCCCE-----EEE--ECCCCHHHHHH
Q ss_conf 4738999941-67789999999970899-8149997176528999999---71178738-----999--45666047999
Q gi|254780201|r 149 SKIAIVVHCY-YQDTWIEISHILLRLNF-DFDLFVTVVEANKDFEQDV---LKYFPSAQ-----LYV--MENKGRDVRPF 216 (394)
Q Consensus 149 ~kIAVvlHly-Y~DLl~E~~~~L~~ip~-~~DL~ITt~~~~~~~~~~~---~~~~~~a~-----V~v--v~NRGRDI~Pf 216 (394)
++|+|++=.| -++.+.++++.+.+... .+.++|.-+-......+.+ ....+... +.+ .++.|.--+..
T Consensus 1 P~isViip~yn~~~~l~~~l~sl~~q~~~~~eiiivdd~S~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 97999995389889999999999828899859999989797308999999743012221111234321121345599999
Q ss_pred HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9862210027867899973687767777644407899999987479989999999997609976898168765
Q gi|254780201|r 217 LYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYR 289 (394)
Q Consensus 217 L~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~~ 289 (394)
-.++ ...+.|||+.+++==. + +++.+..++..++++|..+++++....
T Consensus 81 ~~~~---~~a~~d~i~~lD~D~~---------------------~-~~~~l~~l~~~~~~~~~~~~~~~~~~~ 128 (255)
T 1qg8_A 81 NQAI---EMAEGEYITYATDDNI---------------------Y-MPDRLLKMVRELDTHPEKAVIYSASKT 128 (255)
T ss_dssp HHHH---HHCCCSEEEEEETTEE---------------------E-CTTHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred HHHH---HHCCCCEEEEECCCCC---------------------C-CCCHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 9987---6168766899606743---------------------1-023899999999868981599943399
No 7
>>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} (A:1-230)
Probab=45.11 E-value=20 Score=16.00 Aligned_cols=185 Identities=11% Similarity=-0.014 Sum_probs=98.4
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHH---HHHHCCCCCEEEEEC-CC----CHHHH---
Q ss_conf 47389999416778999999997089---981499971765289999---997117873899945-66----60479---
Q gi|254780201|r 149 SKIAIVVHCYYQDTWIEISHILLRLN---FDFDLFVTVVEANKDFEQ---DVLKYFPSAQLYVME-NK----GRDVR--- 214 (394)
Q Consensus 149 ~kIAVvlHlyY~DLl~E~~~~L~~ip---~~~DL~ITt~~~~~~~~~---~~~~~~~~a~V~vv~-NR----GRDI~--- 214 (394)
++|+|++=.|=.+.+.++++.+.+.. ..+.++|--+.......+ +.....+...+...+ ++ ++-.+
T Consensus 2 p~isViIp~yn~~~l~~~l~si~~q~~~~~~~eIivvDd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (230)
T 1fo8_A 2 AVIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (230)
T ss_dssp CCCCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 72218999757889999999998448677883699997599641799999976550266346766652450354313338
Q ss_pred --------HHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf --------999862210027867899973687767777644407899999987479989999999997609976898168
Q gi|254780201|r 215 --------PFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSR 286 (394)
Q Consensus 215 --------PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~ 286 (394)
..-.+ ......|+|+.+++-=.+ .++.+..++..+.+++....++..
T Consensus 82 ~~~~g~~~a~~~~---~~~a~~~~i~~lD~D~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~ 136 (230)
T 1fo8_A 82 KIARHYRWALGQI---FHNFNYPAAVVVEDDLEV----------------------APDFFEYFQATYPLLKADPSLWCV 136 (230)
T ss_dssp HHHHHHHHHHHHH---HTTSCCSEEEEEETTEEE----------------------CTTHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHH---HHHCCCCEEEEECCCCCC----------------------CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8887899999999---864378779998378651----------------------700899999999997429980699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCC-C-CCCCCCCCCCCCCHHHHH
Q ss_conf 76544332345543221389999999748998855477377012332098887576588-2-235854468888738999
Q gi|254780201|r 287 RYRRYKRWSFFAKRSEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLH-L-IGEFEEERNLKDGALEHA 364 (394)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~R~~AL~pL~~l~-l-~~DF~~E~g~~DGTlaHA 364 (394)
....... +.... . ...........+..|+.+-+|.++++.+-... . .+|+
T Consensus 137 ~~~~~~~-----~~~~~--------~-~~~~~~~~~~~~~~g~~~~~r~~~~~~~~~~~~~~~eD~-------------- 188 (230)
T 1fo8_A 137 SAWNDNG-----KEQMV--------D-SSKPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWDD-------------- 188 (230)
T ss_dssp ESCCTTC-----BGGGS--------C-TTCTTCEEEESSCCCSSEEEEHHHHHHHGGGCCSSCHHH--------------
T ss_pred ECCCCCC-----CCCCC--------C-CCCCCEEEECCCCCCHHHHCCHHHHHHHCCCCCCCCCCH--------------
T ss_conf 4312568-----66666--------6-788744775146771207704998996274467656626--------------
Q ss_pred HHHHHHHHHHHCCCEEEEEHHHHHH
Q ss_conf 9999999999869803352475657
Q gi|254780201|r 365 VERFFACSVRYTEFSIESVDCVAEY 389 (394)
Q Consensus 365 IERl~~~iv~~~gf~i~~v~~~~~~ 389 (394)
-+.+-+...|+++..++...-|
T Consensus 189 ---~~~~~~~~~g~~~~~~~~~~~~ 210 (230)
T 1fo8_A 189 ---WMRRPEQRKGRACVRPEISRTM 210 (230)
T ss_dssp ---HHTSHHHHTTCEEEEESSBSEE
T ss_pred ---HHHHHHHHCCCEEEECCCEEEE
T ss_conf ---6655786359857734633377
No 8
>>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:1-123,A:316-361)
Probab=37.86 E-value=26 Score=15.31 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=34.3
Q ss_pred CCCCCEEEEEE------EHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 77377012332------098887576588223585446888873899999
Q gi|254780201|r 323 LDFFNGTMFWV------KPKCLEPLRNLHLIGEFEEERNLKDGALEHAVE 366 (394)
Q Consensus 323 ~~FpaGSMFW~------R~~AL~pL~~l~l~~DF~~E~g~~DGTlaHAIE 366 (394)
..+..|++.|. .++.++.|.+.+. .-|.-|..+.++|+++.+|
T Consensus 82 ~~lk~G~~lis~l~p~~n~~ll~~l~~kgi-taialE~IpRist~~y~~~ 130 (169)
T 1pjc_A 82 DLMQKDQLLFTYLHLAAARELTEQLMRVGL-TAIAYETVELPNTLPYVVK 130 (169)
T ss_dssp GGCCTTCEEEECCCGGGCHHHHHHHHHHTC-EEEEGGGCCCTTHHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHCCC-EEECCCCCCCCCHHHHHHH
T ss_conf 631467589995301158799999974687-3441312124799999999
No 9
>>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* (A:57-416)
Probab=25.75 E-value=42 Score=14.06 Aligned_cols=127 Identities=12% Similarity=0.089 Sum_probs=80.9
Q ss_pred CCCCCCHHHHHHCCCCEEEEEEECC--HHHHHHHHHHHHHCCCC---EEEEEECC--CC--HHHHHHHHHHCCCCCEEEE
Q ss_conf 7822101100000147389999416--77899999999708998---14999717--65--2899999971178738999
Q gi|254780201|r 135 DRPSSPKKSGLTIKSKIAIVVHCYY--QDTWIEISHILLRLNFD---FDLFVTVV--EA--NKDFEQDVLKYFPSAQLYV 205 (394)
Q Consensus 135 ~~p~~~~~~~~~~k~kIAVvlHlyY--~DLl~E~~~~L~~ip~~---~DL~ITt~--~~--~~~~~~~~~~~~~~a~V~v 205 (394)
..+.........-.++|.|++=.|= .+.+.++++.+.+-..+ +.++|--+ ++ ...+........+...+..
T Consensus 42 ~~~~~~~~~~~~~~p~vSIIIP~yN~~e~~l~~~l~Si~~Qt~~~~~~eIIivDd~s~d~t~~~i~~~~~~~~~~~~~i~ 121 (360)
T 2d7i_A 42 RHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILR 121 (360)
T ss_dssp SCGGGGTCCEESSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEE
T ss_pred CCHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 89545006677789967999985768389999999999955886688589999899997267899999996489889998
Q ss_pred E-CCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 4-566604799998622100278678999736877677776444078999999874799899999999976099768981
Q gi|254780201|r 206 M-ENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIG 284 (394)
Q Consensus 206 v-~NRGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~ 284 (394)
- +|.|.- .++-.++. ..+.|||+.+++==- + .++.++.+++.|++++..+.++
T Consensus 122 ~~~n~G~~-~a~N~g~~---~a~gdyi~flD~Dd~---------------------~-~~~~l~~~~~~~~~~~~~~~~~ 175 (360)
T 2d7i_A 122 TKKREGLI-RTRMLGAS---VATGDVITFLDSHCE---------------------A-NVNWLPPLLDRIARNRKTIVCP 175 (360)
T ss_dssp CSSCCCHH-HHHHHHHH---HCCSSEEEECCSSEE---------------------E-CTTCSHHHHHHHHHCTTEEEEE
T ss_pred CCCCCCHH-HHHHHHHH---HCCCCEEEEECCCEE---------------------E-CCCHHHHHHHHHHCCCCCEEEC
T ss_conf 88986749-99999999---706997999358749---------------------8-8109999999986288733611
Q ss_pred CCC
Q ss_conf 687
Q gi|254780201|r 285 SRR 287 (394)
Q Consensus 285 p~~ 287 (394)
...
T Consensus 176 ~~~ 178 (360)
T 2d7i_A 176 MID 178 (360)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 032
No 10
>>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (A:323-375,A:969-994,A:1252-1275)
Probab=25.63 E-value=32 Score=14.79 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=15.7
Q ss_pred HHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 875765882-23585446888873899999999
Q gi|254780201|r 338 LEPLRNLHL-IGEFEEERNLKDGALEHAVERFF 369 (394)
Q Consensus 338 L~pL~~l~l-~~DF~~E~g~~DGTlaHAIERl~ 369 (394)
|+.|.+.+. .+|-.--|-.....+-|||||+-
T Consensus 40 lralmeanvtaddralmptlstsqirhaieria 72 (103)
T 3cnf_A 40 LRALMEANVTADDRALMPTLSTSQIRHAIERIA 72 (103)
T ss_pred HHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999986436689990188867699999999999
No 11
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271)
Probab=24.87 E-value=43 Score=13.96 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCCEEEEE----EECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC--CCCCE-EEEECCCCHHHHHHHHHH
Q ss_conf 14738999----941677899999999708998149997176528999999711--78738-999456660479999862
Q gi|254780201|r 148 KSKIAIVV----HCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKY--FPSAQ-LYVMENKGRDVRPFLYLL 220 (394)
Q Consensus 148 k~kIAVvl----HlyY~DLl~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~--~~~a~-V~vv~NRGRDI~PfL~~~ 220 (394)
|.+|||++ +-||.+++..+.+.++.... ++.+..+....+.+.+.... -.++. |.+.+-.+...-|.+..+
T Consensus 1 K~tIgvi~~~~~~~f~~~i~~gi~~~a~~~G~--~l~i~~~~~~~~~~~~~i~~li~~~vdgiIi~~~~~~~~~~~l~~l 78 (139)
T 2dri_A 1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGY--NLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (139)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTC--EEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98899992889898999999999999998599--8999958999999999999998618764432122222316899999
Q ss_pred CCCCCCCCCEEEEE
Q ss_conf 21002786789997
Q gi|254780201|r 221 ELGVFDRYDYLCKI 234 (394)
Q Consensus 221 ~~~~l~~YD~v~kl 234 (394)
.+ .+--+|+-=
T Consensus 79 ~~---~gIPvV~id 89 (139)
T 2dri_A 79 NQ---ANIPVITLD 89 (139)
T ss_dssp HH---TTCCEEEES
T ss_pred HH---CCCCCCCCC
T ss_conf 86---377532356
No 12
>>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} (A:)
Probab=23.47 E-value=46 Score=13.79 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=63.7
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57568978999999999999999751001585643999973137741007326871875599999973026642024678
Q gi|254780201|r 57 DVHFQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDR 136 (394)
Q Consensus 57 ~~~~~tP~~f~~~~~wl~~~l~~~~~~~~~~~~~~ivfinaWNEEG~yLePD~~~G~~yL~a~~~al~~~~~~~~~~~~~ 136 (394)
+....+-+.+..|+| +-++++.. . +-+=+.||--.+=. -.-.+.-.|+|++-
T Consensus 8 vivsv~~e~~~nffR--~~~kD~R~---~---GskK~vINvis~i~---------~~e~v~~aREAlLd----------- 59 (126)
T 2rbg_A 8 TLISVNNDNFENYFR--KIFLDVRS---S---GSKKTTINVFTEIQ---------YQELVTLIREALLE----------- 59 (126)
T ss_dssp EEEECCGGGHHHHHH--HHHHHHHH---H---TCSEEEEEEECSSC---------HHHHHHHTHHHHHH-----------
T ss_pred EEEECCHHHHHHHHH--HHHHHHHH---C---CCCEEEEEEECCCC---------HHHHHHHHHHHHHH-----------
T ss_conf 998546665799999--99999985---5---88528999854686---------79999999999884-----------
Q ss_pred CCCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 22101100000147389999416778999999997089981499971765289999997117873
Q gi|254780201|r 137 PSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSA 201 (394)
Q Consensus 137 p~~~~~~~~~~k~kIAVvlHlyY~DLl~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a 201 (394)
...+++-+|+|-+|-.+.+++.+..... =-+.|-++++++...+++...+|++
T Consensus 60 -----------NIDlG~eiy~WK~eeVd~m~~k~~e~~v-dGlliYCDd~nk~~m~Ki~~~~Pns 112 (126)
T 2rbg_A 60 -----------NIDIGYELFLWKKNEVDIFLKNLEKSEV-DGLLVYCDDENKVFXSKIVDNLPTA 112 (126)
T ss_dssp -----------TTTSEEEEEEECGGGHHHHHHHHTTCCC-CEEEEEECGGGHHHHHHHHHTSCHH
T ss_pred -----------CCCCCEEEEEECHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHCCHH
T ss_conf -----------3454528998678999999999998277-7269996798702899998856378
No 13
>>3gtn_A Glucuronoxylanase XYNC; glycosyl hydrolase family 5, GH5, GH 5, glycosyl hydrolase, carbohydrate metabolism, glycosidase, hydrolase; 2.68A {Bacillus subtilis} (A:)
Probab=21.92 E-value=50 Score=13.60 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 40578888789886157568978999999999999999751001585643999973137-74100732687187559999
Q gi|254780201|r 42 YVLWSFSPKQRITSKDVHFQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKE-QKAFLRLNRFMSNSRMPFDS 120 (394)
Q Consensus 42 ~~~WDntpR~~~~~~~~~~~tP~~f~~~~~wl~~~l~~~~~~~~~~~~~~ivfinaWNE-EG~yLePD~~~G~~yL~a~~ 120 (394)
.|.|-.+......+.-....+|+..+.+..+....+..-. + ..-++-++.-||| .+..--++...- .|....+
T Consensus 87 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~i~~~ei~NEp~~~~~~~~~~~~-~~~~~~~ 160 (401)
T 3gtn_A 87 PPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMK--N---NGVNLYAISVQNEPDYAHEWTWWTPQ-EILRFMR 160 (401)
T ss_dssp CCGGGEEECCSSSCTTCEEECGGGHHHHHHHHHHHHHHHH--H---TTCCCSEEESCSSTTSCTTSCBCCHH-HHHHHHH
T ss_pred CCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--H---CCCCEEEEEECCCCCCCCCCCEECHH-HHHHHHH
T ss_conf 8078716853479866887581778999999999999998--6---49975899962688999887447599-9999998
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECC---CCHHHHHHHHHHC
Q ss_conf 9973026642024678221011000001473899994167789999999970899814999717---6528999999711
Q gi|254780201|r 121 EKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVV---EANKDFEQDVLKY 197 (394)
Q Consensus 121 ~al~~~~~~~~~~~~~p~~~~~~~~~~k~kIAVvlHlyY~DLl~E~~~~L~~ip~~~DL~ITt~---~~~~~~~~~~~~~ 197 (394)
.+.. ..+.++....+.....-..............+|.+-.-+ .............
T Consensus 161 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~s~H~Y~~~~~~~~~~~~~~~ 219 (401)
T 3gtn_A 161 ENAG---------------------SINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLYGTQVSQFPYPLFKQK 219 (401)
T ss_dssp HTTT---------------------TCSSEEEEEEETTCCGGGTHHHHTCHHHHHHCSEEEEECTTCCGGGSCCHHHHHH
T ss_pred HHCC---------------------CCCCEEEEECCCCCHHHHHHHHHHCHHHHHHHCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 6343---------------------4465499862578416566665518657754027999637887553203667752
Q ss_pred CCCCEEEEEC
Q ss_conf 7873899945
Q gi|254780201|r 198 FPSAQLYVME 207 (394)
Q Consensus 198 ~~~a~V~vv~ 207 (394)
.+...|.+.|
T Consensus 220 ~~~~pi~itE 229 (401)
T 3gtn_A 220 GAGKDLWMTE 229 (401)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCCEEECC
T ss_conf 8998665225
No 14
>>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} (A:69-159)
Probab=20.83 E-value=40 Score=14.16 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHH---HHCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 99999999708998149997176528999---999---7117873899945666047999986221
Q gi|254780201|r 163 WIEISHILLRLNFDFDLFVTVVEANKDFE---QDV---LKYFPSAQLYVMENKGRDVRPFLYLLEL 222 (394)
Q Consensus 163 l~E~~~~L~~ip~~~DL~ITt~~~~~~~~---~~~---~~~~~~a~V~vv~NRGRDI~PfL~~~~~ 222 (394)
.+|+++.+.+....||.+|++++--.++. ..+ ...+|+.. .+..+-||...+..++.
T Consensus 28 ~~eli~~ik~~~~~~d~~la~~~~m~~l~~~lg~iLGprglmP~~k---~gTv~~di~~~i~~~k~ 90 (91)
T 1ad2_A 28 GEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPK---AGTVGFNIGEIIREIKA 90 (91)
T ss_dssp CGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTT---TTCBCSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCHHHHHHHHHHHC
T ss_conf 2777788856885212687679999999986512037656799877---78865569999999858
Done!