Query gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 394
No_of_seqs 155 out of 190
Neff 5.5
Searched_HMMs 23785
Date Mon May 23 14:56:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780201.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 88.7 1.1 4.8E-05 22.7 10.0 113 149-286 1-125 (255)
2 2z86_A Chondroitin synthase; G 79.6 3 0.00012 20.2 19.2 117 146-288 372-493 (625)
3 2ffu_A Ppgalnact-2, polypeptid 69.6 5.3 0.00022 18.6 14.9 249 98-387 8-286 (501)
4 1qwj_A Cytidine monophospho-N- 62.0 7.5 0.00031 17.7 6.9 96 162-284 30-130 (229)
5 1vlr_A MRNA decapping enzyme; 50.2 5.7 0.00024 18.4 1.6 14 279-292 275-288 (350)
6 1omz_A Alpha-1,4-N-acetylhexos 50.2 12 0.0005 16.5 12.9 120 143-288 22-145 (293)
7 3bl9_A Scavenger mRNA-decappin 44.7 9.1 0.00038 17.2 2.0 54 55-114 111-175 (301)
8 2rbg_A Putative uncharacterize 40.2 17 0.00071 15.5 6.4 105 57-201 8-112 (126)
9 1ezi_A CMP-N-acetylneuraminic 37.8 18 0.00077 15.3 6.4 154 161-341 30-189 (228)
10 2dt7_A Splicing factor 3A subu 22.0 35 0.0015 13.6 2.2 29 57-85 3-31 (38)
11 1vkr_A Mannitol-specific PTS s 21.7 35 0.0015 13.6 3.9 34 172-209 55-88 (125)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis protein SPSA); glycosyltransferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=88.72 E-value=1.1 Score=22.67 Aligned_cols=113 Identities=16% Similarity=0.325 Sum_probs=67.6
Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHCCCCCEEEE--ECCCC-----HHHH---HH
Q ss_conf 4738999941-67789999999970899-814999717652899999971178738999--45666-----0479---99
Q gi|254780201|r 149 SKIAIVVHCY-YQDTWIEISHILLRLNF-DFDLFVTVVEANKDFEQDVLKYFPSAQLYV--MENKG-----RDVR---PF 216 (394)
Q Consensus 149 ~kIAVvlHly-Y~DLl~E~~~~L~~ip~-~~DL~ITt~~~~~~~~~~~~~~~~~a~V~v--v~NRG-----RDI~---Pf 216 (394)
+||.|++=.| -++.+.++++.+.+-.. .++++|--+.......+.+.+......|++ .+|.| +..+ .+
T Consensus 1 P~vSIiip~yN~~~~l~~~l~Si~~qt~~~~eiiivdd~S~d~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~n~g~~~a~ 80 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 97999995389889999999999828899859999989797318999999732011110002344320011335599999
Q ss_pred HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9862210027867899973687767777644407899999987479989999999997609976898168
Q gi|254780201|r 217 LYLLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSR 286 (394)
Q Consensus 217 L~~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~ 286 (394)
=.+++ ..+.|||+.+++== ++ +++.++.+++.|+++|.+++++..
T Consensus 81 N~gi~---~a~g~~i~~lD~Dd---------------------~~-~p~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 81 NQAIE---MAEGEYITYATDDN---------------------IY-MPDRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp HHHHH---HCCCSEEEEEETTE---------------------EE-CTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHH---CCCCCEEEEECCCC---------------------CC-CCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 85543---15875467732664---------------------31-123799999999868981699933
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=79.58 E-value=3 Score=20.15 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred HCCCCEEEEEEEC-CHHHHHHHHHHHHHCC-CCEEEEEECC---CCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 0014738999941-6778999999997089-9814999717---652899999971178738999456660479999862
Q gi|254780201|r 146 TIKSKIAIVVHCY-YQDTWIEISHILLRLN-FDFDLFVTVV---EANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLL 220 (394)
Q Consensus 146 ~~k~kIAVvlHly-Y~DLl~E~~~~L~~ip-~~~DL~ITt~---~~~~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~~~ 220 (394)
...++|.|++-.| -++.+.++++.+.+-. ..+.++|.-+ ++..++..+.....+.+.+...+|.|.- ..+=.++
T Consensus 372 ~~~p~vsvii~~~n~~~~l~~~l~Si~~q~~~~~eiiivdd~s~~~t~~~l~~~~~~~~~i~~~~~~n~g~~-~a~N~~i 450 (625)
T 2z86_A 372 KRVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFISQKNKGIG-SASNTAV 450 (625)
T ss_dssp CSSCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEEECCCCHH-HHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHH-HHHHHHH
T ss_conf 678647774034451777888765210112232789997479984279999998632881899956898889-9999999
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 21002786789997368776777764440789999998747998999999999760997689816876
Q gi|254780201|r 221 ELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRY 288 (394)
Q Consensus 221 ~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~ 288 (394)
+ ..+-|||+.+++-=- + .++.++.+++.|+++|.+++|++...
T Consensus 451 ~---~a~g~~i~~ld~Dd~---------------------~-~p~~l~~~~~~~~~~~~~~~v~~~~~ 493 (625)
T 2z86_A 451 R---LCRGFYIGQLDSDDF---------------------L-EPDAVELCLDEFRKDLSLACVYTTNR 493 (625)
T ss_dssp H---HCCSSEEEECCTTCE---------------------E-CTTHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred H---HCCCCEEEEECCCCC---------------------C-CHHHHHHHHHHHHHCCCCCEEECCEE
T ss_conf 8---589888999768976---------------------0-82799999999984988536841348
No 3
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=69.62 E-value=5.3 Score=18.59 Aligned_cols=249 Identities=11% Similarity=0.107 Sum_probs=118.3
Q ss_pred ECC--CCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEEECCH--H-HHHH
Q ss_conf 137--74100732-------6871875599999973026642024678221011000001473899994167--7-8999
Q gi|254780201|r 98 RKE--QKAFLRLN-------RFMSNSRMPFDSEKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQ--D-TWIE 165 (394)
Q Consensus 98 WNE--EG~yLePD-------~~~G~~yL~a~~~al~~~~~~~~~~~~~p~~~~~~~~~~k~kIAVvlHlyY~--D-Ll~E 165 (394)
|+. |..||... ..-.++|=..+.+.+.--..+-.. .+|.-....-..--++|-||+-.|=. . |+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~i~~~r~~~d~--r~~~c~~~~y~~~lP~vSVII~~~Ne~~~~L~rt 85 (501)
T 2ffu_A 8 WPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDT--RHDQCQRKQWRVDLPATSVVITFHNEARSALLRT 85 (501)
T ss_dssp GGGSCHHHHHHTTCCCTTSCTTTTTSSCHHHHHHSCTTCCCCCC--SCGGGGGCCCCSSCCCEEEEEEESSCCHHHHHHH
T ss_pred HHHCCHHHHCCHHHHHCCHHHHHHHCCCHHHHCCCCCCCCCCCC--CCHHHCCCCCCCCCCCEEEEEEEEECCHHHHHHH
T ss_conf 33368554157565421055798818208775115668988998--8832241558999998589998400847999999
Q ss_pred HHHHHHHCCCCE--EEEEECCCCHHHHHHHHHHCCCCCEEEEEC-CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999997089981--499971765289999997117873899945-66604799998622100278678999736877677
Q gi|254780201|r 166 ISHILLRLNFDF--DLFVTVVEANKDFEQDVLKYFPSAQLYVME-NKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQRE 242 (394)
Q Consensus 166 ~~~~L~~ip~~~--DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~-NRGRDI~PfL~~~~~~~l~~YD~v~klHtKKS~~~ 242 (394)
+-..|...|..+ .|+|-=+-........+.+..+.+.|...+ |.|- +.+.-.+++ ...-|+++.+.+==-
T Consensus 86 i~Svl~~tp~~ll~EIIvVDDgStd~t~~~l~~~~~~ikii~~~~n~G~-~~ArN~G~~---~A~Gd~I~fLD~D~~--- 158 (501)
T 2ffu_A 86 VVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGL-MRSRVRGAD---AAQAKVLTFLDSHCE--- 158 (501)
T ss_dssp HHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHH-HHHHHHHHH---HCCSSEEEECCSSEE---
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHH---HCCCCEEEEECCCCC---
T ss_conf 9999855951039889999899993289999861998799989998588-999999999---727998999889987---
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC------CCCCCCC---------CCCCCCCCCCHHHH
Q ss_conf 77644407899999987479989999999997609976898168------7654433---------23455432213899
Q gi|254780201|r 243 GYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSR------RYRRYKR---------WSFFAKRSEVYRRV 307 (394)
Q Consensus 243 ~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~------~~~~~~~---------~~~~~~~~~~~~~~ 307 (394)
+ +++.++.+++.+.+++..+.+..- ....... +.....+... ..
T Consensus 159 ------------------~-~~~wLe~Ll~~i~~~~~~~v~p~i~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~--~~ 217 (501)
T 2ffu_A 159 ------------------C-NEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYM--TP 217 (501)
T ss_dssp ------------------E-CTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEEC--CH
T ss_pred ------------------C-CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCC--CH
T ss_conf ------------------7-97699999999981997177304751178860221555443553211333343435--54
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHH
Q ss_conf 99999748998855477377012332098887576588223585446888873899999999999998698033524756
Q gi|254780201|r 308 IDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHAVERFFACSVRYTEFSIESVDCVA 387 (394)
Q Consensus 308 ~~L~~rlgi~~~~~~~~FpaGSMFW~R~~AL~pL~~l~l~~DF~~E~g~~DGTlaHAIERl~~~iv~~~gf~i~~v~~~~ 387 (394)
.....+......+...++.+|..|-+|.+++..+=-.+ +.|.. . | .=+--+++-+..+|++|..+-|..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~G~~~~irR~~f~~iGgfD--e~~~~----~-g----~ED~dls~R~~~~Gg~i~~~P~s~ 286 (501)
T 2ffu_A 218 EQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYD--MMMDV----W-G----GENLEISFRVWQCGGSLEIIPCSR 286 (501)
T ss_dssp HHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCC--TTCCS----S-S----SHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCC--CCCCC----C-C----CHHHHHHHHHHHCCCCEEEECCEE
T ss_conf 66541013545543344201123456899999718999--86456----6-6----207999999875478499948739
No 4
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=62.01 E-value=7.5 Score=17.69 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEE-EC----CCCHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 89999999970899814999717652899999971178738999-45----66604799998622100278678999736
Q gi|254780201|r 162 TWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYV-ME----NKGRDVRPFLYLLELGVFDRYDYLCKIHG 236 (394)
Q Consensus 162 Ll~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~v-v~----NRGRDI~PfL~~~~~~~l~~YD~v~klHt 236 (394)
|++-.++.+.....--+++|+|+++... . ..... .+.+.. -+ +.-.....+...+. .....++++-++.
T Consensus 30 Li~~~i~~~~~~~~~~~Iivstd~~~i~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~iv~~~~ 103 (229)
T 1qwj_A 30 LIGWVLRAALDAGVFQSVWVSTDHDEIE--N-VAKQF-GAQVHRRSSETSKDSSTSLDAIVEFLN--YHNEVDIVGNIQA 103 (229)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEESCHHHH--H-HHHHT-TCEEEECCGGGSSTTCCHHHHHHHHHT--TCTTCSEEEEECT
T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHC--C-CHHCC-CCCCCCCCCCCCCCCCHHHHHHCCCCC--CCCCCCEEEECCC
T ss_conf 7999999999669988799954402110--2-01025-851024435324663012222100002--3555788997236
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 877677776444078999999874799899999999976099768981
Q gi|254780201|r 237 KKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIG 284 (394)
Q Consensus 237 KKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~ 284 (394)
-|| +-+.+.+.+.++.|..+..-.++.
T Consensus 104 -~~P--------------------~~~~~~I~~~i~~~~~~~~d~~~~ 130 (229)
T 1qwj_A 104 -TSP--------------------CLHPTDLQKVAEMIREEGYDSVFS 130 (229)
T ss_dssp -TCT--------------------TCCHHHHHHHHHHHHSSCCSEEEE
T ss_pred -CCC--------------------CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf -776--------------------578899999999998579977999
No 5
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=50.19 E-value=5.7 Score=18.40 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=7.5
Q ss_pred CEEEEECCCCCCCC
Q ss_conf 76898168765443
Q gi|254780201|r 279 CLGMIGSRRYRRYK 292 (394)
Q Consensus 279 ~lGlv~p~~~~~~~ 292 (394)
++++=+++.+++.+
T Consensus 275 Rly~HYqPSyYHlH 288 (350)
T 1vlr_A 275 RVYLHYLPSYYHLH 288 (350)
T ss_dssp EEEEESSCSSSSCE
T ss_pred EEEEECCCCCCCEE
T ss_conf 99981599743169
No 6
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=50.18 E-value=12 Score=16.48 Aligned_cols=120 Identities=8% Similarity=0.015 Sum_probs=76.4
Q ss_pred HHHHCCCCEEEEEEECC-HHHHHHHHHHHHHCCCCEEEEEECCC---CHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 00000147389999416-77899999999708998149997176---528999999711787389994566604799998
Q gi|254780201|r 143 SGLTIKSKIAIVVHCYY-QDTWIEISHILLRLNFDFDLFVTVVE---ANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLY 218 (394)
Q Consensus 143 ~~~~~k~kIAVvlHlyY-~DLl~E~~~~L~~ip~~~DL~ITt~~---~~~~~~~~~~~~~~~a~V~vv~NRGRDI~PfL~ 218 (394)
.+.....+++|++=.|= +|++.++++.+.+.+....++|--.. +..+...+.....+...+..-+|.|-.-+ .-.
T Consensus 22 ~~~~~~~~~tviI~tynr~~~L~~~l~sl~~~~~~~~iiVV~n~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a-~n~ 100 (293)
T 1omz_A 22 PSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRN-RLQ 100 (293)
T ss_dssp ----CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGG-GGS
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHH-HHH
T ss_conf 6658899779999468998999999999980899983999989999976899986407899789996289880878-766
Q ss_pred HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 6221002786789997368776777764440789999998747998999999999760997689816876
Q gi|254780201|r 219 LLELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRY 288 (394)
Q Consensus 219 ~~~~~~l~~YD~v~klHtKKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv~p~~~ 288 (394)
+++ ..+.|+|..+-+== +-.++.+++++..|+++|..++.++...
T Consensus 101 g~~---~a~~d~i~~lDdD~----------------------~~~p~~L~~~~~~~~~~~~~~v~~~~~~ 145 (293)
T 1omz_A 101 VFP---EVETNAVLMVDDDT----------------------LISAQDLVFAFSIWQQFPDQIIGFVPRK 145 (293)
T ss_dssp CCT---TCCSSEEEEECTTE----------------------EECHHHHHHHHHHHTTSTTSEEESCEEE
T ss_pred HHH---HCCCCEEEEECCCC----------------------CCHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 687---66957799987511----------------------2006899999999986985379743221
No 7
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=44.66 E-value=9.1 Score=17.18 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=35.8
Q ss_pred CCEEECCCHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 615756897899999-----------999999999975100158564399997313774100732687187
Q gi|254780201|r 55 SKDVHFQELSIFESF-----------IFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNS 114 (394)
Q Consensus 55 ~~~~~~~tP~~f~~~-----------~~wl~~~l~~~~~~~~~~~~~~ivfinaWNEEG~yLePD~~~G~~ 114 (394)
...++..||+.|++. ++|..+.+. ...+.+|++|=..=-|+|..|-||.+|...
T Consensus 111 ~~~~v~ETpe~Y~~~~~Pyi~~~~~~l~WV~nIL~------~~~E~e~viy~d~d~~~GFvllpD~kWd~~ 175 (301)
T 3bl9_A 111 DLRLIRETGDDYRNITLPHLESQSLSIQWVYNILD------KKAEADRIVFENPDPSDGFVLIPDLKWNQQ 175 (301)
T ss_dssp CEEEEEECHHHHHHTHHHHHHTCCCCCHHHHHHHT------TSSSGGGCCEEECCTTTCEEEEECTTCCSS
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHH------CCCCCCEEEEECCCCCCCEEECCCCCCCCC
T ss_conf 55999679999998752576556764158999750------776543269846998888798255675887
No 8
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=40.16 E-value=17 Score=15.53 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=63.8
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57568978999999999999999751001585643999973137741007326871875599999973026642024678
Q gi|254780201|r 57 DVHFQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDR 136 (394)
Q Consensus 57 ~~~~~tP~~f~~~~~wl~~~l~~~~~~~~~~~~~~ivfinaWNEEG~yLePD~~~G~~yL~a~~~al~~~~~~~~~~~~~ 136 (394)
+....+-+.+..|+| +-++++.. . +-+=+.||--.+=. -.-.+.-.|+|++-
T Consensus 8 vivsv~~e~~~nffR--~~~kD~R~---~---GskK~iIN~is~i~---------~~e~v~~aREAlLd----------- 59 (126)
T 2rbg_A 8 TLISVNNDNFENYFR--KIFLDVRS---S---GSKKTTINVFTEIQ---------YQELVTLIREALLE----------- 59 (126)
T ss_dssp EEEECCGGGHHHHHH--HHHHHHHH---H---TCSEEEEEEECSSC---------HHHHHHHTHHHHHH-----------
T ss_pred EEEECCHHHHHHHHH--HHHHHHHH---C---CCCEEEEEEECCCC---------HHHHHHHHHHHHHH-----------
T ss_conf 998546665799999--99999985---5---88528999854686---------79999999999884-----------
Q ss_pred CCCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 22101100000147389999416778999999997089981499971765289999997117873
Q gi|254780201|r 137 PSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSA 201 (394)
Q Consensus 137 p~~~~~~~~~~k~kIAVvlHlyY~DLl~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a 201 (394)
...+++-+|+|-+|-.+.+++.+...... -+.|-++++++...+++...+|++
T Consensus 60 -----------NIDlG~ely~WK~eeVd~m~~k~~~~~vd-GlliYCDd~nk~~m~Ki~~~~Pns 112 (126)
T 2rbg_A 60 -----------NIDIGYELFLWKKNEVDIFLKNLEKSEVD-GLLVYCDDENKVFMSKIVDNLPTA 112 (126)
T ss_dssp -----------TTTSEEEEEEECGGGHHHHHHHHTTCCCC-EEEEEECGGGHHHHHHHHHTSCHH
T ss_pred -----------CCCCCEEEEEECHHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHCCHH
T ss_conf -----------34545289986789999999999982777-269996798702899998856378
No 9
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=37.79 E-value=18 Score=15.30 Aligned_cols=154 Identities=8% Similarity=-0.046 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC-CCHH---HHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 789999999970899814999717652899999971178738999456-6604---799998622100278678999736
Q gi|254780201|r 161 DTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMEN-KGRD---VRPFLYLLELGVFDRYDYLCKIHG 236 (394)
Q Consensus 161 DLl~E~~~~L~~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~N-RGRD---I~PfL~~~~~~~l~~YD~v~klHt 236 (394)
-|++-.++.+.....--+++|+|+++.. ....+.+....+...++ -+.+ ..-+..... .....||+||.++.
T Consensus 30 pLi~~~i~~~~~s~~~~~Iiv~td~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~iv~l~~ 105 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDGGLI---AEEAKNFGVEVVLRPAELASDTASSISGVIHALE-TIGSNSGTVTLLQP 105 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESCHHH---HHHHHHTTCEEEECCC------CHHHHHHHHHHH-HHTCCSEEEEECCT
T ss_pred EHHHHHHHHHHHCCCCCEEEEECCCHHH---HHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCCCEEEEEEC
T ss_conf 5799999999866997649995782898---8777515851466100003677420234445545-31366657999947
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 87767777644407899999987479989999999997609976898--1687654433234554322138999999974
Q gi|254780201|r 237 KKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMI--GSRRYRRYKRWSFFAKRSEVYRRVIDLAKRA 314 (394)
Q Consensus 237 KKS~~~~~~~~~G~~Wr~~Ll~~LLGs~~~v~~Il~~F~~~p~lGlv--~p~~~~~~~~~~~~~~~~~~~~~~~~L~~rl 314 (394)
= +| +-+.+.+.+.+..+..+..-.++ .+.... +............. .....-...
T Consensus 106 ~-~P--------------------f~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 162 (228)
T 1ezi_A 106 T-SP--------------------LRTGAHIREAFSLFDEKIKGSVVSACPMEHH-PLKTLLQINNGEYA-PMRHLSDLE 162 (228)
T ss_dssp T-CT--------------------TCCHHHHHHHHTTCCTTTCCCEEEEEECSSC-TTSCEEECC--CEE-ESSCHHHHT
T ss_pred C-CC--------------------EECHHHHHHHHHHHHCCCCCEEEEEEECCCC-CHHHEEEECCCCEE-EEECCCCCC
T ss_conf 9-97--------------------5514777999999860799879999853458-72106774288355-652144320
Q ss_pred CCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf 899885547737701233209888757
Q gi|254780201|r 315 GFPTKRLHLDFFNGTMFWVKPKCLEPL 341 (394)
Q Consensus 315 gi~~~~~~~~FpaGSMFW~R~~AL~pL 341 (394)
.-...-...-+..|+++|++.+.+..-
T Consensus 163 ~~~q~~~~~~~~~g~~~~~~~~~~~~~ 189 (228)
T 1ezi_A 163 QPRQQLPQAFRPNGAIYINDTASLIAN 189 (228)
T ss_dssp CCGGGSCCEEEEEEEEEEEEHHHHHHH
T ss_pred HHHCCCCCEEEECCEEEEEEHHHHHHC
T ss_conf 121267613776024999889999862
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.03 E-value=35 Score=13.62 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=23.3
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57568978999999999999999751001
Q gi|254780201|r 57 DVHFQELSIFESFIFWLRSFLAFSKYSKL 85 (394)
Q Consensus 57 ~~~~~tP~~f~~~~~wl~~~l~~~~~~~~ 85 (394)
|-.-++|+-|+.|...|..+++++++.++
T Consensus 3 iqais~~~~F~EFY~rLk~IKdfHrryPn 31 (38)
T 2dt7_A 3 LNAISGPNEFAEFYNRLKQIKEFHRKHPN 31 (38)
T ss_dssp SSCCCSCCHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 22036886499999999999999983975
No 11
>1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=21.66 E-value=35 Score=13.57 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=19.4
Q ss_pred HCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 08998149997176528999999711787389994566
Q gi|254780201|r 172 RLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMENK 209 (394)
Q Consensus 172 ~ip~~~DL~ITt~~~~~~~~~~~~~~~~~a~V~vv~NR 209 (394)
.++..+||+||+ ..+...+....+++.|.++.|-
T Consensus 55 ~~~~~~DlIvst----~~l~~~~~~~~~~~~vi~V~n~ 88 (125)
T 1vkr_A 55 NLPPDVDLVITH----RDLTERAMRQVPQAQHISLTNF 88 (125)
T ss_dssp CCCTTCSEEEEE----HHHHHHHHHHCTTSEEEEESCT
T ss_pred CCCCCCCEEEEC----HHHHHHHHHHCCCCEEEEEECC
T ss_conf 079899899987----8998999831999839998327
Done!