RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780201|ref|YP_003064614.1| hypothetical protein
CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)



>gnl|CDD|179282 PRK01345, PRK01345, heat shock protein HtpX; Provisional.
          Length = 317

 Score = 28.8 bits (65), Expect = 2.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 302 EVYRRVIDLAKRAGFPTKRLHL 323
           E+YR V DLA+RAG P  ++++
Sbjct: 68  ELYRMVRDLARRAGLPMPKVYI 89


>gnl|CDD|162465 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
            flippase.  This model describes the P-type ATPase
            responsible for transporting phospholipids from one
            leaflet of bilayer membranes to the other. These ATPases
            are found only in eukaryotes.
          Length = 1057

 Score = 27.7 bits (62), Expect = 5.8
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 14   IENLLLRLDVEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHFQELSIFESFIFWL 73
            I NL + L++     +  I I   +   ++++         S   +     +  +F FWL
Sbjct: 966  IVNLKIALEINRWNWISLITIWGSI-LVWLIFVIVYSSIFPSPAFYKAAPRVMGTFGFWL 1024

Query: 74   RSFLA 78
               + 
Sbjct: 1025 VLLVI 1029


>gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional.
          Length = 616

 Score = 27.3 bits (60), Expect = 7.0
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 111 MSNSRMPFDSEKFLYVKE-----LFEGWNDRPSSPKKSGLTIKSKIAIVVHCY 158
           MSN RMP  S K  Y+       L+ G ND   +   SG  +  KI+ +V  Y
Sbjct: 96  MSNDRMPDISTKGRYILYFVMFLLYMGNNDTKFNYSDSGRNVSKKISEIVTDY 148


>gnl|CDD|177753 PLN00149, PLN00149, potassium transporter; Provisional.
          Length = 779

 Score = 27.1 bits (60), Expect = 8.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 237 KKSQREGYHPIEGIIW----RRWLFFDLLGFSDIAIRIINTFEQNPCL 280
           KK+QR G+  + GI+        +F DL  FS ++I+I  T    P L
Sbjct: 264 KKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPSL 311


>gnl|CDD|185530 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
          Length = 390

 Score = 26.8 bits (60), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 226 DRYDYLCKIHGKKSQ 240
           +R+D+LCK    KS 
Sbjct: 68  ERFDWLCKHFKPKSI 82


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,756,106
Number of extensions: 447680
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 14
Length of query: 394
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 299
Effective length of database: 3,941,713
Effective search space: 1178572187
Effective search space used: 1178572187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.2 bits)