RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780201|ref|YP_003064614.1| hypothetical protein
CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62]
(394 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.9 bits (80), Expect = 0.028
Identities = 52/301 (17%), Positives = 76/301 (25%), Gaps = 173/301 (57%)
Query: 36 AHVSGYYV---LWSFSPKQ---RITSKDVHFQELSI---------FESFI---------- 70
AH Y V L F+P + + H Q L +ESF
Sbjct: 247 AH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 71 FW--LRSFLAFSKYSKLS-------------FPSCRIFFYG-SRKE-QK------AFL-- 105
F+ +R + A+ S L PS + ++++ Q + L
Sbjct: 304 FFIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 106 -------------------------RLNRFMSN---------SRMPFDSEK------FLY 125
LN + SR+PF K FL
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL- 421
Query: 126 VKELFEGWNDRP-SSP-----------------KKSGLTIKSK-IAIVVHCYYQDT---- 162
P +SP K+ ++ +K I I V+ DT
Sbjct: 422 -----------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY----DTFDGS 466
Query: 163 -----------------------WIE-----ISHILLRLNFDFD------LFVTVVEANK 188
W +HIL DF L V + NK
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-----DFGPGGASGLGV-LTHRNK 520
Query: 189 D 189
D
Sbjct: 521 D 521
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.7 bits (68), Expect = 0.57
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 98 RKEQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDRPSSPKKSGLTIKSKI--AIVV 155
R+EQ+ RL + S++ + E K+ E WN R S + K+KI I
Sbjct: 91 REEQRK--RLQELDAASKV-MEQEWREKAKKDLEEWNQRQSEQVE-----KNKINNRIAD 142
Query: 156 HCYYQ 160
+YQ
Sbjct: 143 KAFYQ 147
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2
c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Length = 876
Score = 27.9 bits (61), Expect = 3.8
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 263 FSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFPTKRL 321
D RI E NP LG G R Y + ++ I + + +
Sbjct: 651 QEDALARIEKLSEVNPMLGFRGCRLGISYPEL-TEMQARAIFEAAIAMTNQGVQVFPEI 708
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural
genomics, structural genomics consortium, SGC, PW
domain, protein binding; 1.90A {Homo sapiens} PDB:
3lyi_A*
Length = 158
Score = 28.1 bits (61), Expect = 4.2
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 311 AKRAGFPTKRLHLDFF--NGTMFWVKPKCLEPL---RNLHLIGEFEEERNLKDGALEHAV 365
K+A K + FF T W+ + PL + + E + +++ A
Sbjct: 87 QKQAEAGEKLFLVLFFDNKRTWQWLPRDKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAY 146
Query: 366 ER 367
+R
Sbjct: 147 DR 148
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (61), Expect = 4.5
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 259 DLLGFSDIA-IRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKRSEVYRRVIDLAKRAGFP 317
+L G D+ + ++ F + +G GS R RW A +++A GF
Sbjct: 809 ELEGLLDLERVIVVTGFAE---VGPWGSAR----TRWEMEAFGEFSLEGCVEMAWIMGF- 860
Query: 318 TKRLHLDFFNGTMF------WVKPKCLEPLRNLHLIGEFEEERNLKDGALEHA 364
+ + NG + WV K EP+ + + ++E LEH+
Sbjct: 861 -----ISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETS------ILEHS 902
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase,
thermophilic; 2.28A {Thermotoga maritima} SCOP:
a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A
1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A
1vg7_A
Length = 299
Score = 27.3 bits (59), Expect = 5.7
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 187 NKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLL 220
+ EQ + ++FP + + G+ +R L +L
Sbjct: 17 KERIEQILSQFFPEQIMKDLPLYGKMLRVRLSIL 50
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 26.8 bits (59), Expect = 8.4
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 305 RRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGALEHA 364
R I +F + ++ P ++ L E G L+
Sbjct: 51 RGEIRAMAALSLTRD--EKEFLQRELPYLPPIYIDFLDGFRFDPEEVTVSIDAQGHLDIR 108
Query: 365 VE 366
+
Sbjct: 109 AQ 110
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.328 0.143 0.447
Gapped
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,689,737
Number of extensions: 181081
Number of successful extensions: 759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 19
Length of query: 394
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 300
Effective length of database: 3,414,294
Effective search space: 1024288200
Effective search space used: 1024288200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)