BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62] (394 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter asiaticus str. psy62] Length = 394 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/394 (100%), Positives = 394/394 (100%) Query: 1 MYKVFRLKSKLGKIENLLLRLDVEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHF 60 MYKVFRLKSKLGKIENLLLRLDVEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHF Sbjct: 1 MYKVFRLKSKLGKIENLLLRLDVEEKGNMQAIYIPAHVSGYYVLWSFSPKQRITSKDVHF 60 Query: 61 QELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDS 120 QELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDS Sbjct: 61 QELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRKEQKAFLRLNRFMSNSRMPFDS 120 Query: 121 EKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLF 180 EKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLF Sbjct: 121 EKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYYQDTWIEISHILLRLNFDFDLF 180 Query: 181 VTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQ 240 VTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQ Sbjct: 181 VTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYLLELGVFDRYDYLCKIHGKKSQ 240 Query: 241 REGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKR 300 REGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKR Sbjct: 241 REGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPCLGMIGSRRYRRYKRWSFFAKR 300 Query: 301 SEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGA 360 SEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGA Sbjct: 301 SEVYRRVIDLAKRAGFPTKRLHLDFFNGTMFWVKPKCLEPLRNLHLIGEFEEERNLKDGA 360 Query: 361 LEHAVERFFACSVRYTEFSIESVDCVAEYERLLH 394 LEHAVERFFACSVRYTEFSIESVDCVAEYERLLH Sbjct: 361 LEHAVERFFACSVRYTEFSIESVDCVAEYERLLH 394 >gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62] Length = 365 Score = 268 bits (686), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 146/356 (41%), Positives = 212/356 (59%), Gaps = 4/356 (1%) Query: 40 GYYVLWSFSPKQRITSKDVHFQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRK 99 GY++ S S + ++++++ F FW + L + + KL + + YGSR Sbjct: 9 GYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWT-LFYKRSKKLCYDENYVVAYGSRS 67 Query: 100 EQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYY 159 +K F + N +M + FD ++ + +L GW + P+ K + IK+KIAIVVH YY Sbjct: 68 GKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGW-ESPAMGKVMQIAIKAKIAIVVHLYY 126 Query: 160 QDTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYL 219 D WIEI+++L L+ FDL VT+V + + ++LK FP+A++++MEN GRDV PFL L Sbjct: 127 IDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHGRDVLPFLIL 186 Query: 220 LELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPC 279 LE YDY+CKIHGKKS+R+GY EG +WRRWLF+DLLG + +II TF+ + Sbjct: 187 LETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRD 246 Query: 280 LGMIGSRRYRRYKRWSFFAKRSEVYRRVI-DLAKRAGFPTKRLHLDFFNGTMFWVKPKCL 338 +GMIGSR YR ++ + R +I LA R G + LDFF GTMFWV+ + L Sbjct: 247 IGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEAL 306 Query: 339 EPLRNLHLIGEFEEE-RNLKDGALEHAVERFFACSVRYTEFSIESVDCVAEYERLL 393 +P++NL L FE + DG +EHAVER F+ SV+ F I VDC+ Y + L Sbjct: 307 DPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYRKSL 362 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 26.6 bits (57), Expect = 0.71, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 296 FFAKRSEVYRRVIDLAKRAGFPTKRLHLDFFNGTM 330 A R E+ R++ K G PT +H +G M Sbjct: 6 LIANRGEIALRILRACKELGIPTVAVHSTADSGAM 40 >gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 23.5 bits (49), Expect = 7.0, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Query: 70 IFWLRSFLAFSKYSKLSFPSCRIFFYG----SRKEQKA 103 + LR +++FS ++ P ++F YG S +E+K+ Sbjct: 298 VLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS 335 >gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 23.1 bits (48), Expect = 7.8, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 363 HAVERFFACSVRYTEFSIESVDCVAEYERLLH 394 H + FA V +T ESV+C + R H Sbjct: 82 HLIHSTFADRVFFTNSGAESVECAIKTARRYH 113 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.328 0.143 0.447 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 271,057 Number of Sequences: 1233 Number of extensions: 11776 Number of successful extensions: 41 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 6 length of query: 394 length of database: 328,796 effective HSP length: 76 effective length of query: 318 effective length of database: 235,088 effective search space: 74757984 effective search space used: 74757984 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 39 (19.6 bits)