HHsearch alignment for GI: 254780202 and conserved domain: TIGR01579
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=91.53 E-value=0.3 Score=29.25 Aligned_cols=80 Identities=28% Similarity=0.511 Sum_probs=52.4
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC------C
Q ss_conf 731599976-898887555333323688887757523258886607899999999987521667873899807------7
Q gi|254780202|r 21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG------G 93 (211)
Q Consensus 21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTG------G 93 (211)
T Consensus 208 ~~~RAFvKVQdGCn~-----------~CsyC~IP~~R--Gt~~RS~~~e~~~~~v~~Lv~---~gy~EvVLTGvnlg~Yg 271 (492)
T TIGR01579 208 ERTRAFVKVQDGCNK-----------FCSYCIIPFAR--GTRSRSVPLEKILEQVKELVA---KGYKEVVLTGVNLGSYG 271 (492)
T ss_pred CCCCCEEEEECCCCC-----------CCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHH---CCCEEEEEEEECCCCCC
T ss_conf 788625788758898-----------84410140337--897641667899999999973---77559998400144456
Q ss_pred CCC-CC--CCCHHHHHHHH-C-CC-EEEE
Q ss_conf 200-00--35178999986-8-98-7999
Q gi|254780202|r 94 EPL-LQ--VDVPLIQALNK-R-GF-EIAV 116 (211)
Q Consensus 94 EPl-lq--~l~~L~~~l~~-~-g~-~v~I 116 (211)
T Consensus 272 ~d~~~~g~~L~~Ll~~i~~q~~g~~RiRl 300 (492)
T TIGR01579 272 DDLGENGSSLAKLLEQILKQIPGIERIRL 300 (492)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 88876676089999999864688346763