HHsearch alignment for GI: 254780202 and conserved domain: TIGR03471
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=93.98 E-value=0.37 Score=28.64 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=60.3
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCC
Q ss_conf 731599976-898887555333323688887757523258886607899999999987521667-873899807720000
Q gi|254780202|r 21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQ 98 (211)
Q Consensus 21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~VviTGGEPllq 98 (211)
T Consensus 194 ~~p~~~i~TSRGCP~-----------~C~FC~~p~~-~~Gr~~R~RSpe~VvdEIe~l~~~--y~gv~~~~f~DD~Ft~~ 259 (472)
T TIGR03471 194 KHPYISLYTGRGCPS-----------KCTFCLWPQT-VGGHRYRTRSAESVIEEVKYALEN--FPEVREFFFDDDTFTDD 259 (472)
T ss_pred CCCCEEEECCCCCCC-----------CCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCC
T ss_conf 586147641799887-----------7968788210-268866215999999999999986--68975899947766789
Q ss_pred C--CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 3--51789999868987999727888
Q gi|254780202|r 99 V--DVPLIQALNKRGFEIAVETNGTI 122 (211)
Q Consensus 99 ~--l~~L~~~l~~~g~~v~IETnGt~ 122 (211)
T Consensus 260 ~~r~~eic~~i~~l~i~W~~~~Rv~~ 285 (472)
T TIGR03471 260 KPRAEEIARKLGPLGVTWSCNARANV 285 (472)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99999999999876982787630348