HHsearch alignment for GI: 254780202 and conserved domain: TIGR03471

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=93.98  E-value=0.37  Score=28.64  Aligned_cols=88  Identities=11%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCC
Q ss_conf             731599976-898887555333323688887757523258886607899999999987521667-873899807720000
Q gi|254780202|r   21 GRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQ   98 (211)
Q Consensus        21 G~p~vFiRl-~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~VviTGGEPllq   98 (211)
T Consensus       194 ~~p~~~i~TSRGCP~-----------~C~FC~~p~~-~~Gr~~R~RSpe~VvdEIe~l~~~--y~gv~~~~f~DD~Ft~~  259 (472)
T TIGR03471       194 KHPYISLYTGRGCPS-----------KCTFCLWPQT-VGGHRYRTRSAESVIEEVKYALEN--FPEVREFFFDDDTFTDD  259 (472)
T ss_pred             CCCCEEEECCCCCCC-----------CCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCC
T ss_conf             586147641799887-----------7968788210-268866215999999999999986--68975899947766789


Q ss_pred             C--CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             3--51789999868987999727888
Q gi|254780202|r   99 V--DVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        99 ~--l~~L~~~l~~~g~~v~IETnGt~  122 (211)
T Consensus       260 ~~r~~eic~~i~~l~i~W~~~~Rv~~  285 (472)
T TIGR03471       260 KPRAEEIARKLGPLGVTWSCNARANV  285 (472)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             99999999999876982787630348