HHsearch alignment for GI: 254780202 and conserved domain: TIGR03550
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=90.58 E-value=0.59 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 888877575232-5888660789999999998752166787389980772
Q gi|254780202|r 46 QCRFCDTDFVGI-QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94 (211)
Q Consensus 46 ~C~~CDT~y~~~-~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGE 94 (211)
T Consensus 17 ~C~FCa--F~r~~~~~~ay~ls~eei~~~~~ea~~---~G~tEv~i~gG~ 61 (322)
T TIGR03550 17 RCGYCT--FRRPPGELEAALLSPEEVLEILRKGAA---AGCTEALFTFGE 61 (322)
T ss_pred CCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCC
T ss_conf 696788--516899988774799999999999997---798799964886