Query gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 211 No_of_seqs 111 out of 1224 Neff 7.0 Searched_HMMs 13730 Date Mon May 23 12:48:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780202.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1tv8a_ c.1.28.3 (A:) Molybden 98.5 5.3E-07 3.9E-11 65.2 10.1 102 21-136 8-126 (327) 2 d1r30a_ c.1.28.1 (A:) Biotin s 92.5 0.36 2.6E-05 25.6 9.9 81 23-117 40-127 (312) 3 d1olta_ c.1.28.2 (A:) Oxygen-i 88.9 0.31 2.2E-05 26.1 4.7 85 24-121 51-146 (441) 4 d2deka1 c.90.1.1 (A:1-265) Dip 58.0 5.5 0.0004 17.6 5.4 36 84-119 77-113 (265) 5 d1ejda_ d.68.2.2 (A:) UDP-N-ac 52.2 5.8 0.00042 17.4 3.1 37 86-123 107-144 (419) 6 d1g6sa_ d.68.2.2 (A:) 5-enol-p 47.9 7.9 0.00057 16.5 4.4 38 85-122 110-148 (427) 7 d1wdea_ c.90.1.1 (A:) Diphthin 46.1 8.4 0.00061 16.4 4.9 33 84-116 78-111 (289) 8 d2r48a1 c.44.2.2 (A:2-104) Man 43.9 5.3 0.00038 17.7 1.9 24 102-125 21-44 (103) 9 d1vhva_ c.90.1.1 (A:) Diphthin 43.4 9.2 0.00067 16.1 4.3 38 84-121 75-113 (251) 10 d2b7oa1 c.1.10.8 (A:1-462) Pro 39.8 10 0.00076 15.7 4.3 53 60-113 306-360 (462) 11 d2fiya1 e.59.1.1 (A:19-308) Fd 38.7 8.5 0.00062 16.3 2.3 12 187-198 266-277 (290) 12 d2r4qa1 c.44.2.2 (A:171-273) F 38.1 6.3 0.00046 17.2 1.5 24 102-125 21-44 (103) 13 d1pn3a_ c.87.1.5 (A:) TDP-epi- 34.5 13 0.00091 15.2 3.5 20 102-121 242-261 (391) 14 d2fzcb2 g.41.7.1 (B:101-153) A 34.3 6.6 0.00048 17.1 1.1 12 44-55 35-46 (53) 15 d1njha_ b.128.1.1 (A:) Hypothe 33.6 6.4 0.00046 17.2 1.0 25 100-124 11-36 (118) 16 d1uuqa_ c.1.8.3 (A:) Exomannos 29.5 15 0.0011 14.6 4.3 90 8-120 1-112 (410) 17 d1th5a1 d.52.8.1 (A:154-226) N 28.1 13 0.00097 15.0 1.8 10 23-32 35-44 (73) 18 d1pg5b2 g.41.7.1 (B:105-160) A 27.0 10 0.00073 15.8 1.1 11 44-54 35-45 (56) 19 d2yrka1 g.37.1.4 (A:8-55) Zinc 26.1 11 0.00079 15.6 1.1 13 45-57 7-19 (48) 20 d1rf6a_ d.68.2.2 (A:) 5-enol-p 22.7 20 0.0014 13.8 5.0 37 85-121 106-143 (427) 21 d2h7aa1 d.350.1.1 (A:2-110) Hy 20.9 18 0.0013 14.0 1.4 30 87-116 55-85 (109) 22 d1vq0a2 g.81.1.1 (A:231-287) H 20.7 20 0.0015 13.7 1.6 24 44-76 30-53 (57) No 1 >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Probab=98.51 E-value=5.3e-07 Score=65.17 Aligned_cols=102 Identities=27% Similarity=0.296 Sum_probs=65.1 Q ss_pred CCCEEEEE---CCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 73159997---6898887555333323688887757523----2588866078999999999875216678738998077 Q gi|254780202|r 21 GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVG----IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93 (211) Q Consensus 21 G~p~vFiR---l~GCnL~c~~~~~~~~~~C~~CDT~y~~----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG 93 (211) |+|--.+| ..-||| +|.||-..... ........++.+++..++.++... +...|.+||| T Consensus 8 ~r~~~~l~ieiT~~CNl-----------rC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~---g~~~v~~~GG 73 (327) T d1tv8a_ 8 GRPIRDLRLSVTDRCNF-----------RCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL---GVKKIRITGG 73 (327) T ss_dssp SCBCCEEEEECCSCCSC-----------CCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHT---TCCEEEEESS T ss_pred CCCCCCEEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEECCC T ss_conf 99208579972210089-----------694789760167777647721459999999999999875---9838973798 Q ss_pred CCCCCC-CCHHHHHHHHC-CCEEEEECCCCCCC--------CCCCEEEEECCC Q ss_conf 200003-51789999868-98799972788866--------788507984167 Q gi|254780202|r 94 EPLLQV-DVPLIQALNKR-GFEIAVETNGTIEP--------PQGIDWICVSPK 136 (211) Q Consensus 94 EPllq~-l~~L~~~l~~~-g~~v~IETnGt~~~--------~~~~d~it~SPK 136 (211) ||++.+ ..+++...... +....+=|||+... ...++++.+|-- T Consensus 74 Ep~l~~~~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSld 126 (327) T d1tv8a_ 74 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLD 126 (327) T ss_dssp CGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECC T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC T ss_conf 61246647999998754212220134443111206799999839987862025 No 2 >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Probab=92.48 E-value=0.36 Score=25.61 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=48.6 Q ss_pred CEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-- Q ss_conf 159997-689888755533332368888775752325-8886607899999999987521667873899807720000-- Q gi|254780202|r 23 VAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-- 98 (211) Q Consensus 23 p~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq-- 98 (211) +.+|+- ..||+. +|.||.....+.. ......++.+++.+.+...... +...+++.||.-... T Consensus 40 ~~~~~~~TngC~~-----------~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~---G~~~~~~~~g~~~~~~~ 105 (312) T d1r30a_ 40 STLLSIKTGACPE-----------DCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA---GSTRFCMGAAWKNPHER 105 (312) T ss_dssp EEEEEEECSCBSS-----------CCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT---TCSEEEEEECCSSCCTT T ss_pred EEEEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCCCHH T ss_conf 4134751899888-----------698399876689887642124557899999999974---99899970577787406 Q ss_pred C---CCHHHHHHHHCCCEEEEE Q ss_conf 3---517899998689879997 Q gi|254780202|r 99 V---DVPLIQALNKRGFEIAVE 117 (211) Q Consensus 99 ~---l~~L~~~l~~~g~~v~IE 117 (211) . +..+++.++.....+.+. T Consensus 106 ~~~~~~~~i~~~~~~~~~~~~~ 127 (312) T d1r30a_ 106 DMPYLEQMVQGVKAMGLEACMT 127 (312) T ss_dssp THHHHHHHHHHHHHTTSEEEEE T ss_pred HHHHHHHHHHHCCCCCCEEEEC T ss_conf 6899999998521136323201 No 3 >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Probab=88.92 E-value=0.31 Score=26.10 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=46.6 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCC- Q ss_conf 5999768988875553333236888877575232588866078--9999999998752-16678738998077200003- Q gi|254780202|r 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--VDQLADLIEEQWI-TGEKEGRYCVLTGGEPLLQV- 99 (211) Q Consensus 24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~--~~~i~~~i~~~~~-~~~~~~~~VviTGGEPllq~- 99 (211) ++.|-.-=|+= +|.|||-.- . ......... ++.+...|+.... ........|-+-||-|.+-+ T Consensus 51 sLYiHiPFC~~-----------~C~yC~~~~-~-~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~~ 117 (441) T d1olta_ 51 SLYVHIPFCHK-----------LCYFCGCNK-I-VTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK 117 (441) T ss_dssp EEEEEECEESS-----------CCTTCCSSC-E-ECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH T ss_pred EEEEEECCCCC-----------CCCCCCCEE-E-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH T ss_conf 89997289788-----------899895836-5-4888550999999999999996676179850303861888477899 Q ss_pred --CCHHHHHHHHC-----CCEEEEECCCC Q ss_conf --51789999868-----98799972788 Q gi|254780202|r 100 --DVPLIQALNKR-----GFEIAVETNGT 121 (211) Q Consensus 100 --l~~L~~~l~~~-----g~~v~IETnGt 121 (211) +..|++.+++. ...+++|++=. T Consensus 118 ~~l~~ll~~l~~~~~~~~~~e~t~E~~P~ 146 (441) T d1olta_ 118 AQISRLMKLLRENFQFNADAEISIEVDPR 146 (441) T ss_dssp HHHHHHHHHHHHHSCEEEEEEEEEEECSS T ss_pred HHHHHHHHHHHHHCCCCCHHCCCCCCCCC T ss_conf 99999999876522345000022102345 No 4 >d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]} Probab=57.95 E-value=5.5 Score=17.59 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.4 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC Q ss_conf 8738998077200003-51789999868987999727 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn 119 (211) ..+.+.+++|.|+++. ...++..+++.|+.+.+--. T Consensus 77 g~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~vevvPG 113 (265) T d2deka1 77 ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHA 113 (265) T ss_dssp TSEEEEEESBCTTTTSSTHHHHHHHHHTTCEEEEECC T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEECCC T ss_conf 9988999668542001399999999964777554578 No 5 >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Probab=52.19 E-value=5.8 Score=17.43 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=29.5 Q ss_pred CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC Q ss_conf 3899807720000-3517899998689879997278886 Q gi|254780202|r 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123 (211) Q Consensus 86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~ 123 (211) ..+++||++-|.. ++.+|++.|++.|.++.-+ +|..+ T Consensus 107 ~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~-~g~~~ 144 (419) T d1ejda_ 107 GQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLE-EGYVK 144 (419) T ss_dssp EEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEE-TTEEE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEC-CCCEE T ss_conf 524666643457774267889998536169962-89244 No 6 >d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Probab=47.91 E-value=7.9 Score=16.54 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=30.6 Q ss_pred CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCC Q ss_conf 73899807720000-351789999868987999727888 Q gi|254780202|r 85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122 (211) Q Consensus 85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~ 122 (211) ...+.++||+-|.. ++.++++.|++.|..+..+.++.. T Consensus 110 ~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~~~ 148 (427) T d1g6sa_ 110 SNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENY 148 (427) T ss_dssp EEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTS T ss_pred CEEEECCCCCHHCCCHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 327843664011020145688899844988997405654 No 7 >d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]} Probab=46.11 E-value=8.4 Score=16.36 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=26.7 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 8738998077200003-51789999868987999 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) ..+.+.+++|.|+++. ...|+.++.+.|+.+.+ T Consensus 78 ~~~va~L~~GDP~i~~~~~~l~~~~~~~gi~v~v 111 (289) T d1wdea_ 78 DAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRY 111 (289) T ss_dssp CCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEE T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 7983999689986146499999999865972899 No 8 >d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component ManP, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=43.89 E-value=5.3 Score=17.72 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=19.2 Q ss_pred HHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 789999868987999727888667 Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGTIEPP 125 (211) Q Consensus 102 ~L~~~l~~~g~~v~IETnGt~~~~ 125 (211) .|-+.-++.|+++.+||+|+.-+. T Consensus 21 aLe~aa~~~G~~ikVEtqGa~G~~ 44 (103) T d2r48a1 21 NLQKAADRLGVSIKVETQGGIGVE 44 (103) T ss_dssp HHHHHHHHHTCEEEEEEEETTEEE T ss_pred HHHHHHHHCCCEEEEEECCCCCCC T ss_conf 999999986994899837988888 No 9 >d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=43.41 E-value=9.2 Score=16.08 Aligned_cols=38 Identities=11% Similarity=0.321 Sum_probs=29.1 Q ss_pred CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCC Q ss_conf 8738998077200003-5178999986898799972788 Q gi|254780202|r 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt 121 (211) ..+.+.+++|.|+++. ...+++.+.+.|+.+.+--.=| T Consensus 75 ~~~vv~L~~GDP~i~~~~~~l~~~~~~~gi~vevvPGiS 113 (251) T d1vhva_ 75 SKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGAS 113 (251) T ss_dssp TSEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCC T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCH T ss_conf 894899956875556437899999997599867995530 No 10 >d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} Probab=39.81 E-value=10 Score=15.72 Aligned_cols=53 Identities=13% Similarity=0.298 Sum_probs=37.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCE Q ss_conf 88660789999999998752166787389980--7720000351789999868987 Q gi|254780202|r 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFE 113 (211) Q Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~ 113 (211) +-|..++.+++++.++.+.+... +.+...|| |-.=....+-+|+++.++.|.. T Consensus 306 KvGP~~~pd~l~~L~~~LNP~ne-pGRltLI~RmGa~ki~~~LP~LI~aV~~~g~~ 360 (462) T d2b7oa1 306 KLGPNMTPELAVEYVERLDPHNK-PGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQ 360 (462) T ss_dssp EECTTCCHHHHHHHHHHHCTTCC-TTSEEEEECCCTTTHHHHHHHHHHHHHTTTCC T ss_pred EECCCCCHHHHHHHHHHHCCCCC-CCEEEEEEHHCHHHHHHHHHHHHHHHHHCCCC T ss_conf 46899998999999997492466-65089874106388998889999998761795 No 11 >d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Probab=38.68 E-value=8.5 Score=16.30 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=6.3 Q ss_pred HHHHHHHHCCCC Q ss_conf 999999967897 Q gi|254780202|r 187 LAISYCFQNPKW 198 (211) Q Consensus 187 ~~i~~~~~~~~~ 198 (211) +.+|++.+..++ T Consensus 266 l~LD~~a~e~Gy 277 (290) T d2fiya1 266 LALDMRLAEDGY 277 (290) T ss_dssp HHHHHHHHHTTC T ss_pred HHHHHHHHHCCC T ss_conf 675699985798 No 12 >d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC component FruA, middle domain {Bacillus subtilis [TaxId: 1423]} Probab=38.10 E-value=6.3 Score=17.20 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=19.3 Q ss_pred HHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 789999868987999727888667 Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGTIEPP 125 (211) Q Consensus 102 ~L~~~l~~~g~~v~IETnGt~~~~ 125 (211) .|-+.-++.|+++.+||+|+.-+. T Consensus 21 aLe~aa~~~G~~ikVEtqGs~Gi~ 44 (103) T d2r4qa1 21 ALKEKAKELGVEIKVETNGSSGIK 44 (103) T ss_dssp HHHHHHHHHTCCEEEEEEETTEEE T ss_pred HHHHHHHHCCCEEEEEECCCCCCC T ss_conf 999999987994899837987878 No 13 >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Probab=34.49 E-value=13 Score=15.17 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=11.0 Q ss_pred HHHHHHHHCCCEEEEECCCC Q ss_conf 78999986898799972788 Q gi|254780202|r 102 PLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 102 ~L~~~l~~~g~~v~IETnGt 121 (211) .++..+...|..+.+.+.+. T Consensus 242 ~~~~~l~~~~~~~~~~~~~~ 261 (391) T d1pn3a_ 242 MAIKAVRASGRRIVLSRGWA 261 (391) T ss_dssp HHHHHHHHTTCCEEEECTTT T ss_pred HHHHHHHHCCCEEEEECCCC T ss_conf 99999985697799943643 No 14 >d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=34.25 E-value=6.6 Score=17.07 Aligned_cols=12 Identities=25% Similarity=1.212 Sum_probs=8.9 Q ss_pred CCCCCCCCCCCC Q ss_conf 368888775752 Q gi|254780202|r 44 SAQCRFCDTDFV 55 (211) Q Consensus 44 ~~~C~~CDT~y~ 55 (211) .++|.|||-.|+ T Consensus 35 ~lrC~YCek~~~ 46 (53) T d2fzcb2 35 ALKCKYCEKEFS 46 (53) T ss_dssp EEEETTTCCEEE T ss_pred EEEEECCCCCCC T ss_conf 899677896906 No 15 >d1njha_ b.128.1.1 (A:) Hypothetical protein YojF {Bacillus subtilis [TaxId: 1423]} Probab=33.62 E-value=6.4 Score=17.15 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=19.0 Q ss_pred CCHHHHHHHHCCCEEEEEC-CCCCCC Q ss_conf 5178999986898799972-788866 Q gi|254780202|r 100 DVPLIQALNKRGFEIAVET-NGTIEP 124 (211) Q Consensus 100 l~~L~~~l~~~g~~v~IET-nGt~~~ 124 (211) ...+++.+......+|+|| ||++.- T Consensus 11 Vq~~L~~~~~~~VYiHlETTnGaYa~ 36 (118) T d1njha_ 11 VQASLERYADRPVYIHLETTTGSYSA 36 (118) T ss_dssp HHHHHHHTTTSCEEEEEEEEECC--- T ss_pred HHHHHHHHCCCCEEEEEEECCHHHHH T ss_conf 99999984699549999733616665 No 16 >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} Probab=29.51 E-value=15 Score=14.63 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=48.6 Q ss_pred EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE Q ss_conf 47751055840137315999768988875553333236888877575232588866078999999999875216678738 Q gi|254780202|r 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87 (211) Q Consensus 8 EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 87 (211) |-|..++|.+....=.-+| +.|-|+ .|... ....+...+.+.+.+.++.+... +.+. T Consensus 1 ~~~v~~~g~~f~~nG~~~~--~~G~N~-------------~~~~~-----~~~~~~~~~~~~~~~~l~~~k~~---G~N~ 57 (410) T d1uuqa_ 1 EHFVRVNGGHFELQGKPYV--ITGVNM-------------WYAAY-----LGAPNEVGDRDRLAKELDNLKAI---GVNN 57 (410) T ss_dssp CCCCEEETTEEEETTEEEC--EEEEEC-------------TTHHH-----HTCSSTTCCHHHHHHHHHHHHHT---TCCE T ss_pred CCCEEEECCEEEECCEEEE--EEEEEC-------------CCCCC-----CCCCCCCCCHHHHHHHHHHHHHC---CCCE T ss_conf 9987998999999998999--999931-------------77655-----66567879999999999999977---9959 Q ss_pred EEEECCCC----------C------------CCCCCHHHHHHHHCCCEEEEECCC Q ss_conf 99807720----------0------------003517899998689879997278 Q gi|254780202|r 88 CVLTGGEP----------L------------LQVDVPLIQALNKRGFEIAVETNG 120 (211) Q Consensus 88 VviTGGEP----------l------------lq~l~~L~~~l~~~g~~v~IETnG 120 (211) |=+.++-| - ++.+..+++.++++|++|-++-.. T Consensus 58 iR~~~~~~~~~~~~~~~~~~~~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~ 112 (410) T d1uuqa_ 58 LRVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNN 112 (410) T ss_dssp EEEECCCBCCCSTTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCB T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 9968736654555556877655433245889999999999999739856874034 No 17 >d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Probab=28.14 E-value=13 Score=14.99 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=8.6 Q ss_pred CEEEEECCCC Q ss_conf 1599976898 Q gi|254780202|r 23 VAVFCRFSGC 32 (211) Q Consensus 23 p~vFiRl~GC 32 (211) ..+|+||.|. T Consensus 35 ~~v~v~l~Ga 44 (73) T d1th5a1 35 PIVKVRLTGP 44 (73) T ss_dssp TEEEECCCSS T ss_pred CEEEEEECCC T ss_conf 9999995698 No 18 >d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=27.03 E-value=10 Score=15.82 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=8.4 Q ss_pred CCCCCCCCCCC Q ss_conf 36888877575 Q gi|254780202|r 44 SAQCRFCDTDF 54 (211) Q Consensus 44 ~~~C~~CDT~y 54 (211) .+||.||+..+ T Consensus 35 ~lrC~YCe~~~ 45 (56) T d1pg5b2 35 KMRCEYCETII 45 (56) T ss_dssp EEEETTTCCEE T ss_pred EEEEECCCCEE T ss_conf 89966789791 No 19 >d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]} Probab=26.11 E-value=11 Score=15.58 Aligned_cols=13 Identities=15% Similarity=0.759 Sum_probs=10.7 Q ss_pred CCCCCCCCCCCCC Q ss_conf 6888877575232 Q gi|254780202|r 45 AQCRFCDTDFVGI 57 (211) Q Consensus 45 ~~C~~CDT~y~~~ 57 (211) ..|.+|+++|++. T Consensus 7 ~eC~lC~vKYs~~ 19 (48) T d2yrka1 7 PECTLCGVKYSAR 19 (48) T ss_dssp SCCTTTTCCCCSS T ss_pred CCCCCCCEEEEEE T ss_conf 4276115343010 No 20 >d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Probab=22.69 E-value=20 Score=13.80 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=28.9 Q ss_pred CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCC Q ss_conf 73899807720000-35178999986898799972788 Q gi|254780202|r 85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121 (211) Q Consensus 85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt 121 (211) ...|.++||+=|.. ++.++++.|++.|.++.-+.+.. T Consensus 106 ~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~ 143 (427) T d1rf6a_ 106 DFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERD 143 (427) T ss_dssp SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTT T ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCC T ss_conf 31120479813036555420006876394798303556 No 21 >d2h7aa1 d.350.1.1 (A:2-110) Hypothetical protein YcgL {Escherichia coli [TaxId: 562]} Probab=20.90 E-value=18 Score=14.03 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.9 Q ss_pred EEEEECCCCCCCC-CCHHHHHHHHCCCEEEE Q ss_conf 8998077200003-51789999868987999 Q gi|254780202|r 87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAV 116 (211) Q Consensus 87 ~VviTGGEPllq~-l~~L~~~l~~~g~~v~I 116 (211) .+.+|+..+|.+. ....++.|.++||..++ T Consensus 55 ~l~Lt~~rkLAr~d~~~Vl~~l~~qGfyLQm 85 (109) T d2h7aa1 55 ILPLDGRKKLVNADIEKVKQALTEQGYYLQL 85 (109) T ss_dssp EECSSSCCCCSSSCHHHHHHHHHHTSEEEEC T ss_pred EEECCCCCHHHCCCHHHHHHHHHHCCEEEEC T ss_conf 9713886622219899999999868878978 No 22 >d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=20.74 E-value=20 Score=13.71 Aligned_cols=24 Identities=25% Similarity=0.837 Sum_probs=16.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 368888775752325888660789999999998 Q gi|254780202|r 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76 (211) Q Consensus 44 ~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~ 76 (211) .+.|.||-+.|. ++.+++.+++.. T Consensus 30 ev~C~FC~~~Y~---------f~~~el~~l~~~ 53 (57) T d1vq0a2 30 EVVCKWCNTRYV---------FSEEELEELLKF 53 (57) T ss_dssp EEECTTTCCEEE---------ECHHHHHHHHHH T ss_pred EEEEECCCCEEE---------ECHHHHHHHHHH T ss_conf 998478899887---------899999999985 Done!