Query         gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 211
No_of_seqs    111 out of 1224
Neff          7.0 
Searched_HMMs 13730
Date          Mon May 23 12:48:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780202.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1tv8a_ c.1.28.3 (A:) Molybden  98.5 5.3E-07 3.9E-11   65.2  10.1  102   21-136     8-126 (327)
  2 d1r30a_ c.1.28.1 (A:) Biotin s  92.5    0.36 2.6E-05   25.6   9.9   81   23-117    40-127 (312)
  3 d1olta_ c.1.28.2 (A:) Oxygen-i  88.9    0.31 2.2E-05   26.1   4.7   85   24-121    51-146 (441)
  4 d2deka1 c.90.1.1 (A:1-265) Dip  58.0     5.5  0.0004   17.6   5.4   36   84-119    77-113 (265)
  5 d1ejda_ d.68.2.2 (A:) UDP-N-ac  52.2     5.8 0.00042   17.4   3.1   37   86-123   107-144 (419)
  6 d1g6sa_ d.68.2.2 (A:) 5-enol-p  47.9     7.9 0.00057   16.5   4.4   38   85-122   110-148 (427)
  7 d1wdea_ c.90.1.1 (A:) Diphthin  46.1     8.4 0.00061   16.4   4.9   33   84-116    78-111 (289)
  8 d2r48a1 c.44.2.2 (A:2-104) Man  43.9     5.3 0.00038   17.7   1.9   24  102-125    21-44  (103)
  9 d1vhva_ c.90.1.1 (A:) Diphthin  43.4     9.2 0.00067   16.1   4.3   38   84-121    75-113 (251)
 10 d2b7oa1 c.1.10.8 (A:1-462) Pro  39.8      10 0.00076   15.7   4.3   53   60-113   306-360 (462)
 11 d2fiya1 e.59.1.1 (A:19-308) Fd  38.7     8.5 0.00062   16.3   2.3   12  187-198   266-277 (290)
 12 d2r4qa1 c.44.2.2 (A:171-273) F  38.1     6.3 0.00046   17.2   1.5   24  102-125    21-44  (103)
 13 d1pn3a_ c.87.1.5 (A:) TDP-epi-  34.5      13 0.00091   15.2   3.5   20  102-121   242-261 (391)
 14 d2fzcb2 g.41.7.1 (B:101-153) A  34.3     6.6 0.00048   17.1   1.1   12   44-55     35-46  (53)
 15 d1njha_ b.128.1.1 (A:) Hypothe  33.6     6.4 0.00046   17.2   1.0   25  100-124    11-36  (118)
 16 d1uuqa_ c.1.8.3 (A:) Exomannos  29.5      15  0.0011   14.6   4.3   90    8-120     1-112 (410)
 17 d1th5a1 d.52.8.1 (A:154-226) N  28.1      13 0.00097   15.0   1.8   10   23-32     35-44  (73)
 18 d1pg5b2 g.41.7.1 (B:105-160) A  27.0      10 0.00073   15.8   1.1   11   44-54     35-45  (56)
 19 d2yrka1 g.37.1.4 (A:8-55) Zinc  26.1      11 0.00079   15.6   1.1   13   45-57      7-19  (48)
 20 d1rf6a_ d.68.2.2 (A:) 5-enol-p  22.7      20  0.0014   13.8   5.0   37   85-121   106-143 (427)
 21 d2h7aa1 d.350.1.1 (A:2-110) Hy  20.9      18  0.0013   14.0   1.4   30   87-116    55-85  (109)
 22 d1vq0a2 g.81.1.1 (A:231-287) H  20.7      20  0.0015   13.7   1.6   24   44-76     30-53  (57)

No 1  
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=98.51  E-value=5.3e-07  Score=65.17  Aligned_cols=102  Identities=27%  Similarity=0.296  Sum_probs=65.1

Q ss_pred             CCCEEEEE---CCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             73159997---6898887555333323688887757523----2588866078999999999875216678738998077
Q gi|254780202|r   21 GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVG----IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG   93 (211)
Q Consensus        21 G~p~vFiR---l~GCnL~c~~~~~~~~~~C~~CDT~y~~----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGG   93 (211)
                      |+|--.+|   ..-|||           +|.||-.....    ........++.+++..++.++...   +...|.+|||
T Consensus         8 ~r~~~~l~ieiT~~CNl-----------rC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~---g~~~v~~~GG   73 (327)
T d1tv8a_           8 GRPIRDLRLSVTDRCNF-----------RCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL---GVKKIRITGG   73 (327)
T ss_dssp             SCBCCEEEEECCSCCSC-----------CCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred             CCCCCCEEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEECCC
T ss_conf             99208579972210089-----------694789760167777647721459999999999999875---9838973798


Q ss_pred             CCCCCC-CCHHHHHHHHC-CCEEEEECCCCCCC--------CCCCEEEEECCC
Q ss_conf             200003-51789999868-98799972788866--------788507984167
Q gi|254780202|r   94 EPLLQV-DVPLIQALNKR-GFEIAVETNGTIEP--------PQGIDWICVSPK  136 (211)
Q Consensus        94 EPllq~-l~~L~~~l~~~-g~~v~IETnGt~~~--------~~~~d~it~SPK  136 (211)
                      ||++.+ ..+++...... +....+=|||+...        ...++++.+|--
T Consensus        74 Ep~l~~~~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSld  126 (327)
T d1tv8a_          74 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLD  126 (327)
T ss_dssp             CGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf             61246647999998754212220134443111206799999839987862025


No 2  
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}
Probab=92.48  E-value=0.36  Score=25.61  Aligned_cols=81  Identities=10%  Similarity=0.131  Sum_probs=48.6

Q ss_pred             CEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC--
Q ss_conf             159997-689888755533332368888775752325-8886607899999999987521667873899807720000--
Q gi|254780202|r   23 VAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--   98 (211)
Q Consensus        23 p~vFiR-l~GCnL~c~~~~~~~~~~C~~CDT~y~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviTGGEPllq--   98 (211)
                      +.+|+- ..||+.           +|.||.....+.. ......++.+++.+.+......   +...+++.||.-...  
T Consensus        40 ~~~~~~~TngC~~-----------~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~---G~~~~~~~~g~~~~~~~  105 (312)
T d1r30a_          40 STLLSIKTGACPE-----------DCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA---GSTRFCMGAAWKNPHER  105 (312)
T ss_dssp             EEEEEEECSCBSS-----------CCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT---TCSEEEEEECCSSCCTT
T ss_pred             EEEEEEECCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCCCHH
T ss_conf             4134751899888-----------698399876689887642124557899999999974---99899970577787406


Q ss_pred             C---CCHHHHHHHHCCCEEEEE
Q ss_conf             3---517899998689879997
Q gi|254780202|r   99 V---DVPLIQALNKRGFEIAVE  117 (211)
Q Consensus        99 ~---l~~L~~~l~~~g~~v~IE  117 (211)
                      .   +..+++.++.....+.+.
T Consensus       106 ~~~~~~~~i~~~~~~~~~~~~~  127 (312)
T d1r30a_         106 DMPYLEQMVQGVKAMGLEACMT  127 (312)
T ss_dssp             THHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCEEEEC
T ss_conf             6899999998521136323201


No 3  
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=88.92  E-value=0.31  Score=26.10  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=46.6

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCC-
Q ss_conf             5999768988875553333236888877575232588866078--9999999998752-16678738998077200003-
Q gi|254780202|r   24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--VDQLADLIEEQWI-TGEKEGRYCVLTGGEPLLQV-   99 (211)
Q Consensus        24 ~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~--~~~i~~~i~~~~~-~~~~~~~~VviTGGEPllq~-   99 (211)
                      ++.|-.-=|+=           +|.|||-.- . .........  ++.+...|+.... ........|-+-||-|.+-+ 
T Consensus        51 sLYiHiPFC~~-----------~C~yC~~~~-~-~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~~  117 (441)
T d1olta_          51 SLYVHIPFCHK-----------LCYFCGCNK-I-VTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK  117 (441)
T ss_dssp             EEEEEECEESS-----------CCTTCCSSC-E-ECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH
T ss_pred             EEEEEECCCCC-----------CCCCCCCEE-E-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
T ss_conf             89997289788-----------899895836-5-4888550999999999999996676179850303861888477899


Q ss_pred             --CCHHHHHHHHC-----CCEEEEECCCC
Q ss_conf             --51789999868-----98799972788
Q gi|254780202|r  100 --DVPLIQALNKR-----GFEIAVETNGT  121 (211)
Q Consensus       100 --l~~L~~~l~~~-----g~~v~IETnGt  121 (211)
                        +..|++.+++.     ...+++|++=.
T Consensus       118 ~~l~~ll~~l~~~~~~~~~~e~t~E~~P~  146 (441)
T d1olta_         118 AQISRLMKLLRENFQFNADAEISIEVDPR  146 (441)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHCCCCCHHCCCCCCCCC
T ss_conf             99999999876522345000022102345


No 4  
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]}
Probab=57.95  E-value=5.5  Score=17.59  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=28.4

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECC
Q ss_conf             8738998077200003-51789999868987999727
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN  119 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETn  119 (211)
                      ..+.+.+++|.|+++. ...++..+++.|+.+.+--.
T Consensus        77 g~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~vevvPG  113 (265)
T d2deka1          77 ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHA  113 (265)
T ss_dssp             TSEEEEEESBCTTTTSSTHHHHHHHHHTTCEEEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEECCC
T ss_conf             9988999668542001399999999964777554578


No 5  
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]}
Probab=52.19  E-value=5.8  Score=17.43  Aligned_cols=37  Identities=30%  Similarity=0.289  Sum_probs=29.5

Q ss_pred             CEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             3899807720000-3517899998689879997278886
Q gi|254780202|r   86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE  123 (211)
Q Consensus        86 ~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~~  123 (211)
                      ..+++||++-|.. ++.+|++.|++.|.++.-+ +|..+
T Consensus       107 ~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~-~g~~~  144 (419)
T d1ejda_         107 GQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLE-EGYVK  144 (419)
T ss_dssp             EEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEE-TTEEE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEC-CCCEE
T ss_conf             524666643457774267889998536169962-89244


No 6  
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}
Probab=47.91  E-value=7.9  Score=16.54  Aligned_cols=38  Identities=24%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             73899807720000-351789999868987999727888
Q gi|254780202|r   85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI  122 (211)
Q Consensus        85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt~  122 (211)
                      ...+.++||+-|.. ++.++++.|++.|..+..+.++..
T Consensus       110 ~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~~~  148 (427)
T d1g6sa_         110 SNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENY  148 (427)
T ss_dssp             EEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTS
T ss_pred             CEEEECCCCCHHCCCHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             327843664011020145688899844988997405654


No 7  
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]}
Probab=46.11  E-value=8.4  Score=16.36  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=26.7

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             8738998077200003-51789999868987999
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      ..+.+.+++|.|+++. ...|+.++.+.|+.+.+
T Consensus        78 ~~~va~L~~GDP~i~~~~~~l~~~~~~~gi~v~v  111 (289)
T d1wdea_          78 DAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRY  111 (289)
T ss_dssp             CCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             7983999689986146499999999865972899


No 8  
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component ManP, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=43.89  E-value=5.3  Score=17.72  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             789999868987999727888667
Q gi|254780202|r  102 PLIQALNKRGFEIAVETNGTIEPP  125 (211)
Q Consensus       102 ~L~~~l~~~g~~v~IETnGt~~~~  125 (211)
                      .|-+.-++.|+++.+||+|+.-+.
T Consensus        21 aLe~aa~~~G~~ikVEtqGa~G~~   44 (103)
T d2r48a1          21 NLQKAADRLGVSIKVETQGGIGVE   44 (103)
T ss_dssp             HHHHHHHHHTCEEEEEEEETTEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             999999986994899837988888


No 9  
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=43.41  E-value=9.2  Score=16.08  Aligned_cols=38  Identities=11%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             CCCEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEECCCC
Q ss_conf             8738998077200003-5178999986898799972788
Q gi|254780202|r   84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus        84 ~~~~VviTGGEPllq~-l~~L~~~l~~~g~~v~IETnGt  121 (211)
                      ..+.+.+++|.|+++. ...+++.+.+.|+.+.+--.=|
T Consensus        75 ~~~vv~L~~GDP~i~~~~~~l~~~~~~~gi~vevvPGiS  113 (251)
T d1vhva_          75 SKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGAS  113 (251)
T ss_dssp             TSEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCH
T ss_conf             894899956875556437899999997599867995530


No 10 
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=39.81  E-value=10  Score=15.72  Aligned_cols=53  Identities=13%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHCCCE
Q ss_conf             88660789999999998752166787389980--7720000351789999868987
Q gi|254780202|r   60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVDVPLIQALNKRGFE  113 (211)
Q Consensus        60 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~VviT--GGEPllq~l~~L~~~l~~~g~~  113 (211)
                      +-|..++.+++++.++.+.+... +.+...||  |-.=....+-+|+++.++.|..
T Consensus       306 KvGP~~~pd~l~~L~~~LNP~ne-pGRltLI~RmGa~ki~~~LP~LI~aV~~~g~~  360 (462)
T d2b7oa1         306 KLGPNMTPELAVEYVERLDPHNK-PGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQ  360 (462)
T ss_dssp             EECTTCCHHHHHHHHHHHCTTCC-TTSEEEEECCCTTTHHHHHHHHHHHHHTTTCC
T ss_pred             EECCCCCHHHHHHHHHHHCCCCC-CCEEEEEEHHCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             46899998999999997492466-65089874106388998889999998761795


No 11 
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.68  E-value=8.5  Score=16.30  Aligned_cols=12  Identities=17%  Similarity=0.343  Sum_probs=6.3

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             999999967897
Q gi|254780202|r  187 LAISYCFQNPKW  198 (211)
Q Consensus       187 ~~i~~~~~~~~~  198 (211)
                      +.+|++.+..++
T Consensus       266 l~LD~~a~e~Gy  277 (290)
T d2fiya1         266 LALDMRLAEDGY  277 (290)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
T ss_conf             675699985798


No 12 
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC component FruA, middle domain {Bacillus subtilis [TaxId: 1423]}
Probab=38.10  E-value=6.3  Score=17.20  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             789999868987999727888667
Q gi|254780202|r  102 PLIQALNKRGFEIAVETNGTIEPP  125 (211)
Q Consensus       102 ~L~~~l~~~g~~v~IETnGt~~~~  125 (211)
                      .|-+.-++.|+++.+||+|+.-+.
T Consensus        21 aLe~aa~~~G~~ikVEtqGs~Gi~   44 (103)
T d2r4qa1          21 ALKEKAKELGVEIKVETNGSSGIK   44 (103)
T ss_dssp             HHHHHHHHHTCCEEEEEEETTEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             999999987994899837987878


No 13 
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=34.49  E-value=13  Score=15.17  Aligned_cols=20  Identities=20%  Similarity=0.210  Sum_probs=11.0

Q ss_pred             HHHHHHHHCCCEEEEECCCC
Q ss_conf             78999986898799972788
Q gi|254780202|r  102 PLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus       102 ~L~~~l~~~g~~v~IETnGt  121 (211)
                      .++..+...|..+.+.+.+.
T Consensus       242 ~~~~~l~~~~~~~~~~~~~~  261 (391)
T d1pn3a_         242 MAIKAVRASGRRIVLSRGWA  261 (391)
T ss_dssp             HHHHHHHHTTCCEEEECTTT
T ss_pred             HHHHHHHHCCCEEEEECCCC
T ss_conf             99999985697799943643


No 14 
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.25  E-value=6.6  Score=17.07  Aligned_cols=12  Identities=25%  Similarity=1.212  Sum_probs=8.9

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             368888775752
Q gi|254780202|r   44 SAQCRFCDTDFV   55 (211)
Q Consensus        44 ~~~C~~CDT~y~   55 (211)
                      .++|.|||-.|+
T Consensus        35 ~lrC~YCek~~~   46 (53)
T d2fzcb2          35 ALKCKYCEKEFS   46 (53)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEEECCCCCCC
T ss_conf             899677896906


No 15 
>d1njha_ b.128.1.1 (A:) Hypothetical protein YojF {Bacillus subtilis [TaxId: 1423]}
Probab=33.62  E-value=6.4  Score=17.15  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=19.0

Q ss_pred             CCHHHHHHHHCCCEEEEEC-CCCCCC
Q ss_conf             5178999986898799972-788866
Q gi|254780202|r  100 DVPLIQALNKRGFEIAVET-NGTIEP  124 (211)
Q Consensus       100 l~~L~~~l~~~g~~v~IET-nGt~~~  124 (211)
                      ...+++.+......+|+|| ||++.-
T Consensus        11 Vq~~L~~~~~~~VYiHlETTnGaYa~   36 (118)
T d1njha_          11 VQASLERYADRPVYIHLETTTGSYSA   36 (118)
T ss_dssp             HHHHHHHTTTSCEEEEEEEEECC---
T ss_pred             HHHHHHHHCCCCEEEEEEECCHHHHH
T ss_conf             99999984699549999733616665


No 16 
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}
Probab=29.51  E-value=15  Score=14.63  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             47751055840137315999768988875553333236888877575232588866078999999999875216678738
Q gi|254780202|r    8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY   87 (211)
Q Consensus         8 EiF~SiQGEG~~~G~p~vFiRl~GCnL~c~~~~~~~~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~   87 (211)
                      |-|..++|.+....=.-+|  +.|-|+             .|...     ....+...+.+.+.+.++.+...   +.+.
T Consensus         1 ~~~v~~~g~~f~~nG~~~~--~~G~N~-------------~~~~~-----~~~~~~~~~~~~~~~~l~~~k~~---G~N~   57 (410)
T d1uuqa_           1 EHFVRVNGGHFELQGKPYV--ITGVNM-------------WYAAY-----LGAPNEVGDRDRLAKELDNLKAI---GVNN   57 (410)
T ss_dssp             CCCCEEETTEEEETTEEEC--EEEEEC-------------TTHHH-----HTCSSTTCCHHHHHHHHHHHHHT---TCCE
T ss_pred             CCCEEEECCEEEECCEEEE--EEEEEC-------------CCCCC-----CCCCCCCCCHHHHHHHHHHHHHC---CCCE
T ss_conf             9987998999999998999--999931-------------77655-----66567879999999999999977---9959


Q ss_pred             EEEECCCC----------C------------CCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf             99807720----------0------------003517899998689879997278
Q gi|254780202|r   88 CVLTGGEP----------L------------LQVDVPLIQALNKRGFEIAVETNG  120 (211)
Q Consensus        88 VviTGGEP----------l------------lq~l~~L~~~l~~~g~~v~IETnG  120 (211)
                      |=+.++-|          -            ++.+..+++.++++|++|-++-..
T Consensus        58 iR~~~~~~~~~~~~~~~~~~~~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~  112 (410)
T d1uuqa_          58 LRVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNN  112 (410)
T ss_dssp             EEEECCCBCCCSTTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             9968736654555556877655433245889999999999999739856874034


No 17 
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=28.14  E-value=13  Score=14.99  Aligned_cols=10  Identities=30%  Similarity=0.308  Sum_probs=8.6

Q ss_pred             CEEEEECCCC
Q ss_conf             1599976898
Q gi|254780202|r   23 VAVFCRFSGC   32 (211)
Q Consensus        23 p~vFiRl~GC   32 (211)
                      ..+|+||.|.
T Consensus        35 ~~v~v~l~Ga   44 (73)
T d1th5a1          35 PIVKVRLTGP   44 (73)
T ss_dssp             TEEEECCCSS
T ss_pred             CEEEEEECCC
T ss_conf             9999995698


No 18 
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=27.03  E-value=10  Score=15.82  Aligned_cols=11  Identities=27%  Similarity=0.963  Sum_probs=8.4

Q ss_pred             CCCCCCCCCCC
Q ss_conf             36888877575
Q gi|254780202|r   44 SAQCRFCDTDF   54 (211)
Q Consensus        44 ~~~C~~CDT~y   54 (211)
                      .+||.||+..+
T Consensus        35 ~lrC~YCe~~~   45 (56)
T d1pg5b2          35 KMRCEYCETII   45 (56)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEEECCCCEE
T ss_conf             89966789791


No 19 
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.11  E-value=11  Score=15.58  Aligned_cols=13  Identities=15%  Similarity=0.759  Sum_probs=10.7

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             6888877575232
Q gi|254780202|r   45 AQCRFCDTDFVGI   57 (211)
Q Consensus        45 ~~C~~CDT~y~~~   57 (211)
                      ..|.+|+++|++.
T Consensus         7 ~eC~lC~vKYs~~   19 (48)
T d2yrka1           7 PECTLCGVKYSAR   19 (48)
T ss_dssp             SCCTTTTCCCCSS
T ss_pred             CCCCCCCEEEEEE
T ss_conf             4276115343010


No 20 
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=22.69  E-value=20  Score=13.80  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=28.9

Q ss_pred             CCEEEEECCCCCCC-CCCHHHHHHHHCCCEEEEECCCC
Q ss_conf             73899807720000-35178999986898799972788
Q gi|254780202|r   85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT  121 (211)
Q Consensus        85 ~~~VviTGGEPllq-~l~~L~~~l~~~g~~v~IETnGt  121 (211)
                      ...|.++||+=|.. ++.++++.|++.|.++.-+.+..
T Consensus       106 ~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~  143 (427)
T d1rf6a_         106 DFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERD  143 (427)
T ss_dssp             SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTT
T ss_pred             CCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCC
T ss_conf             31120479813036555420006876394798303556


No 21 
>d2h7aa1 d.350.1.1 (A:2-110) Hypothetical protein YcgL {Escherichia coli [TaxId: 562]}
Probab=20.90  E-value=18  Score=14.03  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=24.9

Q ss_pred             EEEEECCCCCCCC-CCHHHHHHHHCCCEEEE
Q ss_conf             8998077200003-51789999868987999
Q gi|254780202|r   87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAV  116 (211)
Q Consensus        87 ~VviTGGEPllq~-l~~L~~~l~~~g~~v~I  116 (211)
                      .+.+|+..+|.+. ....++.|.++||..++
T Consensus        55 ~l~Lt~~rkLAr~d~~~Vl~~l~~qGfyLQm   85 (109)
T d2h7aa1          55 ILPLDGRKKLVNADIEKVKQALTEQGYYLQL   85 (109)
T ss_dssp             EECSSSCCCCSSSCHHHHHHHHHHTSEEEEC
T ss_pred             EEECCCCCHHHCCCHHHHHHHHHHCCEEEEC
T ss_conf             9713886622219899999999868878978


No 22 
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.74  E-value=20  Score=13.71  Aligned_cols=24  Identities=25%  Similarity=0.837  Sum_probs=16.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             368888775752325888660789999999998
Q gi|254780202|r   44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE   76 (211)
Q Consensus        44 ~~~C~~CDT~y~~~~~~~~~~~~~~~i~~~i~~   76 (211)
                      .+.|.||-+.|.         ++.+++.+++..
T Consensus        30 ev~C~FC~~~Y~---------f~~~el~~l~~~   53 (57)
T d1vq0a2          30 EVVCKWCNTRYV---------FSEEELEELLKF   53 (57)
T ss_dssp             EEECTTTCCEEE---------ECHHHHHHHHHH
T ss_pred             EEEEECCCCEEE---------ECHHHHHHHHHH
T ss_conf             998478899887---------899999999985


Done!