BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780202|ref|YP_003064615.1| hypothetical protein
CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
(211 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039879|gb|ACT56675.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 211
Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats.
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT
Sbjct: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG
Sbjct: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF
Sbjct: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LEENTNLAISYCFQNPKWRLSVQTHKFIGIR
Sbjct: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
>gi|311106693|ref|YP_003979546.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8]
gi|310761382|gb|ADP16831.1| radical SAM superfamily protein 3 [Achromobacter xylosoxidans A8]
Length = 226
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 123/209 (58%), Positives = 146/209 (69%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G
Sbjct: 17 MTYSAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEG 76
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ +L RY V TGGEPLLQ+D PL+ A++ RGF IA+ETNGT
Sbjct: 77 GGKFATPELLADAIAAAWGPGATDRYVVFTGGEPLLQLDAPLLTAVHARGFTIAIETNGT 136
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I+PP GIDWICVSPK + ++ G ELKLV+PQ N PE + DF+ F LQPMDGP
Sbjct: 137 IKPPAGIDWICVSPKGTAPVVLERGDELKLVYPQANARPEAFAHLDFDHFFLQPMDGPAR 196
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 197 AANTEQAVQYCMQHPQWRLSLQTHKYIGI 225
>gi|315122629|ref|YP_004063118.1| hypothetical protein CKC_04405 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496031|gb|ADR52630.1| hypothetical protein CKC_04405 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 211
Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats.
Identities = 172/211 (81%), Positives = 188/211 (89%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MKLYS+KEIFLTLQGEG GRVAVFCRFSGCNLWSGRE+DRL AQCRFCDTDFVG +GT
Sbjct: 1 MKLYSVKEIFLTLQGEGAQVGRVAVFCRFSGCNLWSGREKDRLFAQCRFCDTDFVGTKGT 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGRY+ +QLADLI WI EKE RYCVLTGGEPLLQVD LI+ALNKR F I+VETNG
Sbjct: 61 MGGRYSAEQLADLIASAWIPEEKEERYCVLTGGEPLLQVDSALIKALNKRNFTISVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI+PP+GIDWICVSPKAGCDLK+K GQELKLVFPQV+ PENYI FDF+ FSLQPMDG F
Sbjct: 121 TIKPPEGIDWICVSPKAGCDLKVKNGQELKLVFPQVDAPPENYIDFDFDIFSLQPMDGSF 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L+ENTNLAISYCF+NPKWR+S+QTHKFIGIR
Sbjct: 181 LKENTNLAISYCFKNPKWRVSLQTHKFIGIR 211
>gi|75676803|ref|YP_319224.1| hypothetical protein Nwi_2619 [Nitrobacter winogradskyi Nb-255]
gi|74421673|gb|ABA05872.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 210
Score = 277 bits (708), Expect = 8e-73, Method: Composition-based stats.
Identities = 134/210 (63%), Positives = 155/210 (73%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA CRFCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFSGCNLWSGREEDRASATCRFCDTDFVGTDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY G RY VLTGGEPLLQVD + AL+ RGFEI +ETNGT
Sbjct: 61 GGRYASADALADTVAGQWAGPAAHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ PP GIDW+CVSPKAG DL+I+ G ELKLV+PQ + PE++ F+RFSLQPMDGP
Sbjct: 121 LAPPDGIDWLCVSPKAGADLRIRRGHELKLVYPQADARPEDFADLAFDRFSLQPMDGPDA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
ENT A+ YC ++P+WRLS+QTHK +GIR
Sbjct: 181 AENTARAVDYCLRHPQWRLSLQTHKTLGIR 210
>gi|92118709|ref|YP_578438.1| hypothetical protein Nham_3243 [Nitrobacter hamburgensis X14]
gi|91801603|gb|ABE63978.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 210
Score = 277 bits (708), Expect = 9e-73, Method: Composition-based stats.
Identities = 135/210 (64%), Positives = 156/210 (74%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ GT+
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRTSAICRFCDTDFVGMDGTR 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY TG RY VLTGGEPLLQVD + AL+ RGFEI +ETNGT
Sbjct: 61 GGRYAAADELADTVAAQWTGSAPHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I PP GIDW+CVSPKAG DL++ G ELKLV+PQ PE++ FERFSLQPMDGP
Sbjct: 121 IVPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQAGARPEDFKDLAFERFSLQPMDGPDA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT AI YC ++P+WRLS+QTHK +GIR
Sbjct: 181 ADNTARAIDYCMRHPQWRLSLQTHKTLGIR 210
>gi|53717820|ref|YP_106806.1| hypothetical protein BPSL0178 [Burkholderia pseudomallei K96243]
gi|53724959|ref|YP_101992.1| hypothetical protein BMA0153 [Burkholderia mallei ATCC 23344]
gi|67642462|ref|ZP_00441218.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4]
gi|76808972|ref|YP_331771.1| GntS [Burkholderia pseudomallei 1710b]
gi|121598296|ref|YP_994090.1| hypothetical protein BMASAVP1_A2794 [Burkholderia mallei SAVP1]
gi|124385117|ref|YP_001028247.1| hypothetical protein BMA10229_A2285 [Burkholderia mallei NCTC
10229]
gi|126439185|ref|YP_001057215.1| organic radical activating protein [Burkholderia pseudomallei 668]
gi|126450309|ref|YP_001081890.1| hypothetical protein BMA10247_2364 [Burkholderia mallei NCTC 10247]
gi|134284085|ref|ZP_01770779.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|167717531|ref|ZP_02400767.1| hypothetical protein BpseD_00837 [Burkholderia pseudomallei DM98]
gi|167736572|ref|ZP_02409346.1| hypothetical protein Bpse14_00837 [Burkholderia pseudomallei 14]
gi|167813673|ref|ZP_02445353.1| hypothetical protein Bpse9_00961 [Burkholderia pseudomallei 91]
gi|167822191|ref|ZP_02453662.1| hypothetical protein Bpseu9_00842 [Burkholderia pseudomallei 9]
gi|167892283|ref|ZP_02479685.1| hypothetical protein Bpse7_00882 [Burkholderia pseudomallei 7894]
gi|167900778|ref|ZP_02487983.1| hypothetical protein BpseN_00787 [Burkholderia pseudomallei NCTC
13177]
gi|167917042|ref|ZP_02504133.1| hypothetical protein BpseBC_00742 [Burkholderia pseudomallei
BCC215]
gi|217424912|ref|ZP_03456408.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
gi|226194613|ref|ZP_03790208.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
9]
gi|237810350|ref|YP_002894801.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346]
gi|251767984|ref|ZP_02269071.2| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|254176794|ref|ZP_04883451.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
gi|254182243|ref|ZP_04888840.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
gi|254188167|ref|ZP_04894679.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
52237]
gi|254203672|ref|ZP_04910032.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|254208648|ref|ZP_04914996.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|254258885|ref|ZP_04949939.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
gi|254360298|ref|ZP_04976568.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|52208234|emb|CAH34165.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52428382|gb|AAU48975.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
gi|76578425|gb|ABA47900.1| GntS [Burkholderia pseudomallei 1710b]
gi|121227106|gb|ABM49624.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
gi|124293137|gb|ABN02406.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
gi|126218678|gb|ABN82184.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
gi|126243179|gb|ABO06272.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
gi|134244537|gb|EBA44641.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|147745184|gb|EDK52264.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|147750524|gb|EDK57593.1| conserved hypothetical protein [Burkholderia mallei JHU]
gi|148029538|gb|EDK87443.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|157935847|gb|EDO91517.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
52237]
gi|160697835|gb|EDP87805.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
gi|184212781|gb|EDU09824.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
gi|217391932|gb|EEC31958.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
gi|225933314|gb|EEH29306.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
9]
gi|237506322|gb|ACQ98640.1| radical SAM domain protein [Burkholderia pseudomallei MSHR346]
gi|238523620|gb|EEP87057.1| organic radical activating enzyme [Burkholderia mallei GB8 horse 4]
gi|243061139|gb|EES43325.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|254217574|gb|EET06958.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
Length = 210
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG
Sbjct: 61 GGKFKDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTRLAIDWCKRHPRWRLSMQTHKYLNI 209
>gi|126452181|ref|YP_001064455.1| hypothetical protein BURPS1106A_0172 [Burkholderia pseudomallei
1106a]
gi|167843783|ref|ZP_02469291.1| hypothetical protein BpseB_00735 [Burkholderia pseudomallei B7210]
gi|167909000|ref|ZP_02496091.1| hypothetical protein Bpse112_00785 [Burkholderia pseudomallei 112]
gi|242315880|ref|ZP_04814896.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
gi|254197017|ref|ZP_04903441.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
gi|254295716|ref|ZP_04963173.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
gi|126225823|gb|ABN89363.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
gi|157806282|gb|EDO83452.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
gi|169653760|gb|EDS86453.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
gi|242139119|gb|EES25521.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
Length = 210
Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG
Sbjct: 61 GGKFEDAASLAARIASLWPAGEAY-RFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTRLAIDWCKRHPRWRLSMQTHKYLNI 209
>gi|209515825|ref|ZP_03264687.1| Radical SAM domain protein [Burkholderia sp. H160]
gi|209503673|gb|EEA03667.1| Radical SAM domain protein [Burkholderia sp. H160]
Length = 210
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 124/210 (59%), Positives = 151/210 (71%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y D+L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPKWRLSMQTHKYLNI 209
>gi|238028936|ref|YP_002913167.1| hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1]
gi|237878130|gb|ACR30463.1| Hypothetical protein bglu_1g34010 [Burkholderia glumae BGR1]
Length = 210
Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats.
Identities = 122/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR SA CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDSAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LAD + W GE R+ V TGGEP+LQ+D PL+ AL+ RGFEIA+ETNG
Sbjct: 61 GGKFRTPELLADQVAALWPAGEA-HRFVVCTGGEPMLQLDQPLVDALHARGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTRGHELKVVIPQDNQRLADYARLDFEHFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTRLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|83720295|ref|YP_440696.1| hypothetical protein BTH_I0138 [Burkholderia thailandensis E264]
gi|167579367|ref|ZP_02372241.1| hypothetical protein BthaT_14560 [Burkholderia thailandensis TXDOH]
gi|167617468|ref|ZP_02386099.1| hypothetical protein BthaB_14260 [Burkholderia thailandensis Bt4]
gi|257140656|ref|ZP_05588918.1| hypothetical protein BthaA_15810 [Burkholderia thailandensis E264]
gi|83654120|gb|ABC38183.1| conserved hypothetical protein [Burkholderia thailandensis E264]
Length = 210
Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LA I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG
Sbjct: 61 GGKFKDAASLAAKIASLWPPGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|167834987|ref|ZP_02461870.1| hypothetical protein Bpse38_00765 [Burkholderia thailandensis
MSMB43]
Length = 210
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRDGAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LA+ I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG
Sbjct: 61 GGKFKDAASLAEKIASLWPAGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQHLADYAKLDFEHFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RELNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|221201867|ref|ZP_03574904.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
gi|221207627|ref|ZP_03580635.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221172473|gb|EEE04912.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221178287|gb|EEE10697.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
Length = 210
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDADALVATIASLWPDGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|295675134|ref|YP_003603658.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
gi|295434977|gb|ADG14147.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
Length = 210
Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats.
Identities = 123/210 (58%), Positives = 151/210 (71%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y D+L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKYRTPDELVAMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|167645047|ref|YP_001682710.1| hypothetical protein Caul_1082 [Caulobacter sp. K31]
gi|167347477|gb|ABZ70212.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 210
Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats.
Identities = 132/209 (63%), Positives = 152/209 (72%), Gaps = 2/209 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIFLTLQGEGG AG+ AVFCRF+GCNLW+GREQDR A C FCDTDFVG G
Sbjct: 1 MTYSVKEIFLTLQGEGGQAGKAAVFCRFAGCNLWTGREQDRRKAVCAFCDTDFVGTDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D L D +E W TG R V TGGEPLLQ+D PLI A + RGF IAVETNG
Sbjct: 61 GGKFVTPDALVDAVEAAW-TGGPGDRLVVCTGGEPLLQLDAPLIAAFHARGFMIAVETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P+GIDWICVSPKA + GQELKLV+PQ PE + DFERF LQPMDGP
Sbjct: 120 TVAAPEGIDWICVSPKADAPVVQTRGQELKLVYPQDKALPERFAALDFERFYLQPMDGPD 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIG 209
E NT LA++YC +P+WRLSVQTHK++G
Sbjct: 180 RERNTQLAVAYCLSHPQWRLSVQTHKYLG 208
>gi|161526284|ref|YP_001581296.1| organic radical activating enzyme-like protein [Burkholderia
multivorans ATCC 17616]
gi|189349002|ref|YP_001944630.1| hypothetical protein BMULJ_00116 [Burkholderia multivorans ATCC
17616]
gi|160343713|gb|ABX16799.1| organic radical activating enzyme-like protein [Burkholderia
multivorans ATCC 17616]
gi|189333024|dbj|BAG42094.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
Length = 210
Score = 274 bits (700), Expect = 6e-72, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GF IA+ETNG
Sbjct: 61 GGKFKDADALVATIAGLWPAGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFGIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|325518103|gb|EGC97893.1| organic radical activating enzyme-like protein [Burkholderia sp.
TJI49]
Length = 210
Score = 274 bits (700), Expect = 7e-72, Method: Composition-based stats.
Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDADALVATIAGLWPDGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|221214677|ref|ZP_03587647.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
gi|221165567|gb|EED98043.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
Length = 210
Score = 273 bits (699), Expect = 8e-72, Method: Composition-based stats.
Identities = 120/210 (57%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + D L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDADALVATIAGLWPDGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|186474815|ref|YP_001856285.1| radical SAM domain-containing protein [Burkholderia phymatum
STM815]
gi|184191274|gb|ACC69239.1| Radical SAM domain protein [Burkholderia phymatum STM815]
Length = 210
Score = 273 bits (699), Expect = 9e-72, Method: Composition-based stats.
Identities = 118/210 (56%), Positives = 151/210 (71%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A C+FCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ ++LA I W GE + R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG
Sbjct: 61 GGKFRTPEELAAKIASLWPEGEDQ-RFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ IDWICVSPKAG L G ELK+V PQ N +Y +F+ F +QPMDGP
Sbjct: 120 SLPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLADYAKLEFDYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|193222302|emb|CAL61551.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 211
Score = 273 bits (699), Expect = 9e-72, Method: Composition-based stats.
Identities = 123/210 (58%), Positives = 149/210 (70%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G
Sbjct: 1 MTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + +LA+ I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNG
Sbjct: 61 GGKFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P G+DWICVSPK G L ++ G ELK+V PQ+ S Y DF+ F +QPMDGP
Sbjct: 121 TLPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E+NT LAI C +NPKW+LS+QTHK + I
Sbjct: 181 AEQNTRLAIEICKKNPKWKLSLQTHKLLQI 210
>gi|312797586|ref|YP_004030508.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI
454]
gi|312169361|emb|CBW76364.1| Queuosine biosynthesis protein QueE [Burkholderia rhizoxinica HKI
454]
Length = 263
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 122/212 (57%), Positives = 148/212 (69%), Gaps = 3/212 (1%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR A CRFCDTDFVG G
Sbjct: 51 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRADAVCRFCDTDFVGTDGEN 110
Query: 62 GGRY-NVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
GG+Y + D L I W GE + R+ V TGGEP+LQ+D LI AL++ F IAVET
Sbjct: 111 GGKYRDADALVAKIASLWPPGEAAAQYRFVVCTGGEPMLQLDAALIDALHRERFVIAVET 170
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT+ GIDW+CVSPKAG + + G ELK+V PQ N Y DFE F +QPMDG
Sbjct: 171 NGTLPVLPGIDWVCVSPKAGSSIVVTRGNELKVVIPQDNQPLSEYARLDFEHFLVQPMDG 230
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P E NT LA+ +C ++P+WRLS+QTHK++ I
Sbjct: 231 PSRELNTKLAVDWCKRHPQWRLSMQTHKYLNI 262
>gi|192289792|ref|YP_001990397.1| hypothetical protein Rpal_1382 [Rhodopseudomonas palustris TIE-1]
gi|192283541|gb|ACE99921.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
Length = 210
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 139/211 (65%), Positives = 167/211 (79%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGRY + + LAD I EQW+ G+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNG
Sbjct: 61 GGRYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TIEPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ + PE + +FERFSLQPMDGP
Sbjct: 120 TIEPPAGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPD 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
++NT AI+YC ++P+WRLS+QTHK GIR
Sbjct: 180 RDDNTTRAIAYCLKHPQWRLSLQTHKITGIR 210
>gi|115353224|ref|YP_775063.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria AMMD]
gi|170703437|ref|ZP_02894209.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria IOP40-10]
gi|171319449|ref|ZP_02908554.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria MEX-5]
gi|172062096|ref|YP_001809748.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria MC40-6]
gi|115283212|gb|ABI88729.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria AMMD]
gi|170131652|gb|EDT00208.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria IOP40-10]
gi|171095341|gb|EDT40322.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria MEX-5]
gi|171994613|gb|ACB65532.1| organic radical activating enzyme-like protein [Burkholderia
ambifaria MC40-6]
Length = 210
Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDAEALVATIAGLWPDGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|148261740|ref|YP_001235867.1| organic radical activating-like protein [Acidiphilium cryptum JF-5]
gi|146403421|gb|ABQ31948.1| Organic radical activating enzymes-like protein [Acidiphilium
cryptum JF-5]
Length = 211
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 130/210 (61%), Positives = 153/210 (72%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG G
Sbjct: 1 MAYSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ + LA I+ W V TGGEPLLQ+D PLI+A++ GFEIAVETNG
Sbjct: 61 GGRFADAAGLARAIQAAWSAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TIEPP GIDW+CVSPK G +L ++ G ELKLV+PQ +PE + G DF F LQPMDGP
Sbjct: 121 TIEPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT AI YC +P+WRLS+QTHK++GI
Sbjct: 181 RAANTRAAIEYCLTHPQWRLSMQTHKYLGI 210
>gi|323524432|ref|YP_004226585.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1001]
gi|323381434|gb|ADX53525.1| Radical SAM domain protein [Burkholderia sp. CCGE1001]
Length = 210
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 121/210 (57%), Positives = 152/210 (72%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y ++L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKYRTPEELVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDAPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|107024049|ref|YP_622376.1| organic radical activating enzymes-like [Burkholderia cenocepacia
AU 1054]
gi|116691136|ref|YP_836759.1| organic radical activating enzymes-like protein [Burkholderia
cenocepacia HI2424]
gi|170734467|ref|YP_001766414.1| organic radical activating enzyme-like protein [Burkholderia
cenocepacia MC0-3]
gi|105894238|gb|ABF77403.1| organic radical activating enzymes-like protein [Burkholderia
cenocepacia AU 1054]
gi|116649225|gb|ABK09866.1| organic radical activating enzymes-like protein [Burkholderia
cenocepacia HI2424]
gi|169817709|gb|ACA92292.1| organic radical activating enzyme-like protein [Burkholderia
cenocepacia MC0-3]
Length = 210
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDAAALVATIAGLWPEGEAN-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|167561072|ref|ZP_02353988.1| hypothetical protein BoklE_00844 [Burkholderia oklahomensis EO147]
Length = 210
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 118/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + + LA I W GE R+ V TGGEP+LQ+D L+ AL+ GF IA+ETNG
Sbjct: 61 GGKFKDAESLAAQIASLWPEGEA-HRFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDW+CVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 180 RDFNTKLAIDWCKRHPKWRLSMQTHKYLNI 209
>gi|206558876|ref|YP_002229636.1| hypothetical protein BCAL0474 [Burkholderia cenocepacia J2315]
gi|198034913|emb|CAR50785.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 210
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDAAALVATIAGLWPEGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|78067938|ref|YP_370707.1| organic radical activating-like protein [Burkholderia sp. 383]
gi|77968683|gb|ABB10063.1| Organic radical activating enzymes-like protein [Burkholderia sp.
383]
Length = 210
Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats.
Identities = 118/210 (56%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDAEALVATIAGLWPEGEA-HRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DFE + +QPMDGP
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYYLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|300691566|ref|YP_003752561.1| hypothetical protein RPSI07_1920 [Ralstonia solanacearum PSI07]
gi|299078626|emb|CBJ51283.1| conserved protein of unknown function (Organic radical activating
enzymes) [Ralstonia solanacearum PSI07]
Length = 212
Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 123/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+
Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTQ 60
Query: 62 GGRY-NVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG+Y D LAD + QW V TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61 GGKYPTADALADTVVAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT+ P GIDW+CVSPK G +L + G ELK+V PQ + + Y DF F LQPMDGP
Sbjct: 121 GTLAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQQDQDLDAYERLDFRHFFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT LA+ C + P+W LS+QTHK +GIR
Sbjct: 181 LARQNTALAVDLCQRRPRWHLSLQTHKMLGIR 212
>gi|326405234|ref|YP_004285316.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301]
gi|325052096|dbj|BAJ82434.1| hypothetical protein ACMV_30870 [Acidiphilium multivorum AIU301]
Length = 211
Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 130/210 (61%), Positives = 152/210 (72%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG G
Sbjct: 1 MAYSVKEIFPTLQGEGRNAGRAAVFCRFAGCNLWSGREEDRASATCRFCDTDFVGTDGPG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ + LA I+ W V TGGEPLLQ+D PLI+A++ GFEIAVETNG
Sbjct: 61 GGRFADAAGLARAIQAAWPAACTRDALVVFTGGEPLLQLDAPLIEAVHDAGFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TIEPP GIDW+CVSPK G +L ++ G ELKLV+PQ +PE + G DF F LQPMDGP
Sbjct: 121 TIEPPPGIDWLCVSPKEGAELVVRQGSELKLVYPQKEATPERFAGLDFAHFLLQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT AI YC +P+WRLS QTHK++GI
Sbjct: 181 RAANTRAAIEYCLTHPQWRLSTQTHKYLGI 210
>gi|134297293|ref|YP_001121028.1| organic radical activating enzyme-like protein [Burkholderia
vietnamiensis G4]
gi|134140450|gb|ABO56193.1| organic radical activating enzyme-like protein [Burkholderia
vietnamiensis G4]
Length = 210
Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 147/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDAAALVATIAGLWPHGEA-HRFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ IDWICVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLDTIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|167568301|ref|ZP_02361175.1| hypothetical protein BoklC_00570 [Burkholderia oklahomensis C6786]
Length = 210
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 118/210 (56%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRDGAVCRFCDTDFVGADGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + + LA I W GE R+ V TGGEP+LQ+D L+ AL+ GF IA+ETNG
Sbjct: 61 GGKFKDAESLAAQIASLWPEGEA-HRFVVCTGGEPMLQLDQALVDALHAAGFTIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDW+CVSPKA L + G ELK+V PQ N +Y DFE F +QPMDGP
Sbjct: 120 SLPVLESIDWVCVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++PKWRLS+QTHK++ I
Sbjct: 180 RDFNTKLAIDWCKRHPKWRLSMQTHKYLNI 209
>gi|170694006|ref|ZP_02885162.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
gi|170141078|gb|EDT09250.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
Length = 210
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 120/210 (57%), Positives = 150/210 (71%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKYRTAADLVQMIASQWPEGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFDYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|134094603|ref|YP_001099678.1| hypothetical protein HEAR1379 [Herminiimonas arsenicoxydans]
Length = 248
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 123/209 (58%), Positives = 149/209 (71%), Gaps = 1/209 (0%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G G
Sbjct: 39 TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTDGEGG 98
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ + +LA+ I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNGT
Sbjct: 99 GKFADAVKLANTINALWPASYAASKYVVFTGGEPLLQLDTELINAMHAVGFEIAIETNGT 158
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P G+DWICVSPK G L ++ G ELK+V PQ+ S Y DF+ F +QPMDGP
Sbjct: 159 LPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQLAQSLAAYEDLDFQHFFVQPMDGPLA 218
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E+NT LAI C +NPKW+LS+QTHK + I
Sbjct: 219 EQNTRLAIEICKKNPKWKLSLQTHKLLQI 247
>gi|39934265|ref|NP_946541.1| hypothetical protein RPA1190 [Rhodopseudomonas palustris CGA009]
gi|39648113|emb|CAE26633.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 210
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 139/211 (65%), Positives = 167/211 (79%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDQATCKFCDTDFIGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGRY + + LAD I EQW+ G+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNG
Sbjct: 61 GGRYASAEHLADTIAEQWV-GDARDRYVVITGGEPLLQLDGELITALHARGFAIGVETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TIEPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ + PE + +FERFSLQPMDGP
Sbjct: 120 TIEPPVGIDWLCVSPKAGAELRIRRGDELKLVYPQPDAMPEEFAALEFERFSLQPMDGPE 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
++NT AI+YC ++P+WRLS+QTHK GIR
Sbjct: 180 RDDNTTRAIAYCLKHPQWRLSLQTHKITGIR 210
>gi|17546168|ref|NP_519570.1| hypothetical protein RSc1449 [Ralstonia solanacearum GMI1000]
gi|17428464|emb|CAD15151.1| probable organic radical activating enzyme protein [Ralstonia
solanacearum GMI1000]
Length = 212
Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats.
Identities = 125/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT
Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG+Y D LAD + QW GR V TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61 GGKYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT+ P GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP
Sbjct: 121 GTLAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT LA+ C + P+W LS+QTHK +GIR
Sbjct: 181 LARRNTALAVELCQRRPRWHLSLQTHKMLGIR 212
>gi|154253588|ref|YP_001414412.1| hypothetical protein Plav_3149 [Parvibaculum lavamentivorans DS-1]
gi|154157538|gb|ABS64755.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
Length = 210
Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats.
Identities = 135/209 (64%), Positives = 155/209 (74%), Gaps = 1/209 (0%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+YS+KEIF TLQGEG +AGR +VFCRFSGCNLWSGRE+DR A C FCDTDFVG G G
Sbjct: 1 MYSVKEIFYTLQGEGANAGRPSVFCRFSGCNLWSGREEDRADAVCTFCDTDFVGTNGEGG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ +V LAD IE+ W +G R+ V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT
Sbjct: 61 GKFRDVAALADAIEKTWESGAAHNRFVVCTGGEPLLQLDAPLIAALHSRGFEIAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I P+GIDWICVSPKA +LK G ELKLV+PQ PE + DF F LQPMDG
Sbjct: 121 IVAPEGIDWICVSPKADAELKQTSGHELKLVYPQHKAQPERFEQLDFRYFYLQPMDGADA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
EENT A +YC +PKWRLS+QTHK IGI
Sbjct: 181 EENTRAATAYCLAHPKWRLSLQTHKLIGI 209
>gi|16127389|ref|NP_421953.1| hypothetical protein CC_3159 [Caulobacter crescentus CB15]
gi|221236197|ref|YP_002518634.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000]
gi|13424829|gb|AAK25121.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220965370|gb|ACL96726.1| queuosine biosynthesis protein QueE [Caulobacter crescentus NA1000]
Length = 210
Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats.
Identities = 128/208 (61%), Positives = 147/208 (70%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR A C FCDTDFVG G
Sbjct: 1 MTYSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGEN 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ + E TG + R V TGGEP LQ+D I AL+ RGF+IAVETNGT
Sbjct: 61 GGKFATAEDLAAAVEAQWTGGPDDRLVVCTGGEPFLQLDDAAIAALHARGFQIAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I P G+DWICVSPKA + GQELKLVFPQ PE + DFERF LQPMDGP
Sbjct: 121 ITAPAGVDWICVSPKADAPVVQTSGQELKLVFPQEKAMPERFAALDFERFYLQPMDGPDR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ NT LA++YC +P+WRLSVQTHK++G
Sbjct: 181 DANTQLAVAYCLSHPQWRLSVQTHKYLG 208
>gi|299134645|ref|ZP_07027837.1| Radical SAM domain protein [Afipia sp. 1NLS2]
gi|298590455|gb|EFI50658.1| Radical SAM domain protein [Afipia sp. 1NLS2]
Length = 210
Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats.
Identities = 135/211 (63%), Positives = 156/211 (73%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG AGR AVFCRF+GCNLWSGREQDR A C+FCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGMQAGRPAVFCRFAGCNLWSGREQDRAEAVCQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGRY D LA+ I W R+ VLTGGEP+LQ+D LI AL+ RGF IAVETNG
Sbjct: 61 GGRYATADDLAERIAATWGPDS-RHRFVVLTGGEPMLQIDDALIAALHARGFMIAVETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P G+DWICVSPKA +L I+ G ELKLV+PQ +PE+Y F+ F LQPMDGP
Sbjct: 120 TLPAPPGLDWICVSPKADTELAIRQGHELKLVYPQRQNAPEDYTALAFQHFLLQPMDGPD 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LE+NT AI YC ++P+WRLSVQTHK IGIR
Sbjct: 180 LEQNTARAIDYCLRHPQWRLSVQTHKTIGIR 210
>gi|85714274|ref|ZP_01045262.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A]
gi|85698721|gb|EAQ36590.1| hypothetical protein NB311A_15022 [Nitrobacter sp. Nb-311A]
Length = 210
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 136/210 (64%), Positives = 154/210 (73%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y+IKE+FLTLQGEG HAGR AVFCRFSGCNLWSGRE+DR SA C FCDTDFVG GT
Sbjct: 1 MSYAIKEVFLTLQGEGAHAGRAAVFCRFSGCNLWSGREKDRASATCAFCDTDFVGTDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY+ G RY VLTGGEPLLQVD I AL+ R FEI +ETNGT
Sbjct: 61 GGRYDTADALAETVAAQWIGPAAHRYAVLTGGEPLLQVDKAFIDALHARRFEIGIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I PP GIDW+CVSPKAG DL++ G ELKLV+PQ N+ PE++ FERFSLQPMDGP
Sbjct: 121 IVPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQENIRPEDFKDLAFERFSLQPMDGPDA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT AI YC ++P+WRLS+QTHK IGIR
Sbjct: 181 ADNTARAIDYCLRHPQWRLSLQTHKTIGIR 210
>gi|300311525|ref|YP_003775617.1| organic radical activating enzyme protein [Herbaspirillum
seropedicae SmR1]
gi|300074310|gb|ADJ63709.1| organic radical activating enzyme protein [Herbaspirillum
seropedicae SmR1]
Length = 229
Score = 271 bits (692), Expect = 5e-71, Method: Composition-based stats.
Identities = 122/209 (58%), Positives = 148/209 (70%), Gaps = 1/209 (0%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
YSIKEIF TLQGEG HAGR AVFCRFSGCNLW+GRE+DR+ A C+FCDTDFVG G G
Sbjct: 20 TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRVRAICQFCDTDFVGTDGENG 79
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ + +LA I+ W +Y V TGGEPLLQ+D LI+A++ GFEIA+ETNGT
Sbjct: 80 GKFKSPAELAAKIDSLWPARYAPSKYVVFTGGEPLLQLDAALIEAMHAVGFEIAIETNGT 139
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I+ P G+DWICVSPK G +LK++ G ELK+V PQ + Y DF+ F LQPMDG
Sbjct: 140 IDVPDGVDWICVSPKMGSELKVRRGSELKVVVPQPGQPLDEYEKLDFQHFLLQPMDGLQA 199
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT LAI NPKW+LS+QTHK + I
Sbjct: 200 AANTRLAIEMVKNNPKWKLSIQTHKLLNI 228
>gi|187922325|ref|YP_001893967.1| radical SAM protein [Burkholderia phytofirmans PsJN]
gi|187713519|gb|ACD14743.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN]
Length = 210
Score = 271 bits (692), Expect = 7e-71, Method: Composition-based stats.
Identities = 122/210 (58%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G +Y D L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GDKYRTADDLVKMIAAQWPEGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDLNTRLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|330818676|ref|YP_004362381.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3]
gi|327371069|gb|AEA62425.1| hypothetical protein bgla_1g38230 [Burkholderia gladioli BSR3]
Length = 210
Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats.
Identities = 118/210 (56%), Positives = 152/210 (72%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR +A CRFCDTDFVG G
Sbjct: 1 MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRETAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ +QLA ++ W GE R+ V TGGEP+LQ+D PL+ AL+ +GFEIA+ETNG
Sbjct: 61 GGKFKTPEQLAAMVASLWPEGEAN-RFVVCTGGEPMLQLDQPLVDALHAQGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGHELKVVVPQDNQRLADYARLDFDYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|307728151|ref|YP_003905375.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003]
gi|307582686|gb|ADN56084.1| Radical SAM domain protein [Burkholderia sp. CCGE1003]
Length = 210
Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats.
Identities = 120/210 (57%), Positives = 153/210 (72%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y + ++L +I QW GE + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKYRSAEELVRMIASQWPQGEGQ-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSDYAKLDFQYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTRLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|302383449|ref|YP_003819272.1| hypothetical protein Bresu_2339 [Brevundimonas subvibrioides ATCC
15264]
gi|302194077|gb|ADL01649.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
15264]
Length = 211
Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats.
Identities = 128/211 (60%), Positives = 152/211 (72%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE FLT+QGEGG AGR AVF RF+GCNLWSGREQDR A C FCDT+FVG G
Sbjct: 1 MTYSVKETFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRAKAVCSFCDTEFVGTDGDG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + L+D + WI + + + V TGGEPLLQ+D PLI+AL+ RGF+IAVETNG
Sbjct: 61 GGKFADAGVLSDHVASMWIGRDGDPKLVVCTGGEPLLQLDAPLIEALHARGFDIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P GIDW+CVSPKA + GQELKLVFPQ P + DFERF LQPMDGP
Sbjct: 121 TLAAPTGIDWVCVSPKAAAPVVQTSGQELKLVFPQALAMPHRFEALDFERFWLQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT A+ YC +NPKWRLSVQTHK+IG+R
Sbjct: 181 QAANTAAALDYCLKNPKWRLSVQTHKYIGVR 211
>gi|86748323|ref|YP_484819.1| hypothetical protein RPB_1198 [Rhodopseudomonas palustris HaA2]
gi|86571351|gb|ABD05908.1| Radical SAM [Rhodopseudomonas palustris HaA2]
Length = 210
Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats.
Identities = 138/211 (65%), Positives = 166/211 (78%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR A C+FCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRHDAVCQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGRY + +LAD I QW+ + RY V+TGGEPLLQ+D LI AL+K+GFE+ VETNG
Sbjct: 61 GGRYGDAGKLADTIAAQWVGAD-TDRYVVITGGEPLLQLDAELIDALHKQGFEVGVETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TIEPP GIDW+CVSPKAG ++++ G ELKLV+PQ + PE + DFERFSLQPMDGP
Sbjct: 120 TIEPPAGIDWLCVSPKAGTQIRVQCGNELKLVYPQPDAMPEQFTSLDFERFSLQPMDGPD 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
++NT AI YC ++P+WRLSVQTHK IGIR
Sbjct: 180 RDDNTRRAIDYCLRHPQWRLSVQTHKVIGIR 210
>gi|27377594|ref|NP_769123.1| hypothetical protein bll2483 [Bradyrhizobium japonicum USDA 110]
gi|27350739|dbj|BAC47748.1| bll2483 [Bradyrhizobium japonicum USDA 110]
Length = 210
Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 140/211 (66%), Positives = 161/211 (76%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR +VFCRF+GCNLWSGRE DR A C+FCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREADRQDATCKFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGRY + +LAD I QW T + RY VLTGGEPLLQVD LI AL+ RGFEI VETNG
Sbjct: 61 GGRYASAVELADTIAAQW-TASNDNRYVVLTGGEPLLQVDDALIDALHARGFEIGVETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI P G+DWICVSPK G +L ++ G ELKLV+PQ +PE + G FERFSLQPMDGP
Sbjct: 120 TIAAPDGLDWICVSPKGGSELVLRRGHELKLVYPQALAAPETFEGLAFERFSLQPMDGPE 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ ENT AI YC ++P+WRLSVQTHK +GIR
Sbjct: 180 VAENTARAIDYCLRHPQWRLSVQTHKSLGIR 210
>gi|91781440|ref|YP_556646.1| hypothetical protein Bxe_A4406 [Burkholderia xenovorans LB400]
gi|91685394|gb|ABE28594.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 210
Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 123/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y + L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 REINTRLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|194289720|ref|YP_002005627.1| hypothetical protein RALTA_A1615 [Cupriavidus taiwanensis LMG
19424]
gi|193223555|emb|CAQ69560.1| conserved hypothetical protein, NrdG domain (Organic radical
activating enzymes) [Cupriavidus taiwanensis LMG 19424]
Length = 211
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 151/211 (71%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG GT+
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTR 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y +LA ++ +W G V TGGEPLLQ+D PLI+AL+ GFEIA+ETNG
Sbjct: 61 GGKYRTAAELAAVVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIEALHAHGFEIAIETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI P GIDW+CVSPK G +L + G ELK+V PQ Y DF F +Q MDGP
Sbjct: 121 TIAVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDFAAYEKLDFRHFLVQAMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
ENT A+++C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211
>gi|284028807|ref|YP_003378738.1| hypothetical protein Kfla_0827 [Kribbella flavida DSM 17836]
gi|283808100|gb|ADB29939.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length = 211
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 116/210 (55%), Positives = 149/210 (70%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C FCDTDFVG G
Sbjct: 1 MSYKVKEIFYTLQGEGSHAGRPAVFCRFASCNLWTGREKDRARAICSFCDTDFVGTDGPG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + + LA +E+ W + R V TGGEPLLQ+D + AL++RGF +AVETNG
Sbjct: 61 GGKFASAEDLARAVEDAWPHDGHDQRMVVCTGGEPLLQLDADAVSALHERGFYVAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T PPQG+DW+CVSPK G +L + G ELKLV+PQ P + +FE F LQPMD P
Sbjct: 121 TQIPPQGLDWLCVSPKIGAELIVTSGDELKLVYPQAGGDPAQFEHLEFEHFRLQPMDSPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++NT A+ YC ++P+W+LS+QTHK++GI
Sbjct: 181 RQQNTAAAVEYCLKHPRWQLSLQTHKYLGI 210
>gi|293605772|ref|ZP_06688146.1| GntS protein [Achromobacter piechaudii ATCC 43553]
gi|292815821|gb|EFF74928.1| GntS protein [Achromobacter piechaudii ATCC 43553]
Length = 210
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 121/209 (57%), Positives = 145/209 (69%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G
Sbjct: 1 MTYTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ L + + RY V TGGEPLLQ+D PL+ A++ RGF +A+ETNGT
Sbjct: 61 GGKFATPDLLADTIAATWGPDTQDRYVVFTGGEPLLQLDAPLLTAIHARGFTVAIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
++ P GIDWICVSPK + I G ELKLV+PQ N PE + DFE F LQPMDGP
Sbjct: 121 VKAPAGIDWICVSPKGTAPIVIDRGDELKLVYPQHNALPETFAHLDFEHFFLQPMDGPAR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 181 VANTEQAVQYCMQHPQWRLSLQTHKYIGI 209
>gi|296161371|ref|ZP_06844178.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
gi|295888357|gb|EFG68168.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
Length = 210
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 122/210 (58%), Positives = 150/210 (71%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y + L +I QW GE E R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKYRTAEDLVRMIASQWPQGEGE-RFVVCTGGEPMLQIDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ + IDWICVSPKA L + G ELK+V PQ N Y DFE F +QPMDGP
Sbjct: 120 SLPVLETIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLSEYAKLDFEYFLVQPMDGPS 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 180 RDINTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|91975780|ref|YP_568439.1| hypothetical protein RPD_1300 [Rhodopseudomonas palustris BisB5]
gi|91682236|gb|ABE38538.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 210
Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats.
Identities = 137/210 (65%), Positives = 158/210 (75%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR +VFCRF+GCNLW+GREQDR A CRFCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWTGREQDRDQAACRFCDTDFVGTDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY G + RY V+TGGEPLLQ+D LI AL K+GF I VETNGT
Sbjct: 61 GGRYTDAGELAGAIAAQWAGAELDRYVVITGGEPLLQLDAELIAALQKQGFAIGVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
IEPP GIDW+CVSPKAG +L++K G ELKLV+PQ PE + DFERFSLQPMDGP
Sbjct: 121 IEPPPGIDWLCVSPKAGAELRVKRGNELKLVYPQPGAMPEQFAALDFERFSLQPMDGPAR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+E+T LAI+YC ++P+WRLSVQTHK IGIR
Sbjct: 181 DEHTRLAIAYCLRHPQWRLSVQTHKTIGIR 210
>gi|86742064|ref|YP_482464.1| hypothetical protein Francci3_3380 [Frankia sp. CcI3]
gi|86568926|gb|ABD12735.1| conserved hypothetical protein [Frankia sp. CcI3]
Length = 212
Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats.
Identities = 122/212 (57%), Positives = 147/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+Y IKEIF TLQGEG +GR AVFCRF+ CNLW+GRE+DR A C+FCDTDFVG G
Sbjct: 1 MVYRIKEIFYTLQGEGVRSGRPAVFCRFALCNLWTGRERDRHRAVCQFCDTDFVGTDGPD 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG + D LAD + +W + Y V TGGEPLLQ+D P + AL+ RGFE+AVETN
Sbjct: 61 GGVFDTPDDLADAVAARWPSDAPGALPYVVCTGGEPLLQLDTPAVSALHTRGFEVAVETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT P G+DW+CVSPKAG L++ G ELKLVFPQ PE + G +F LQPMDGP
Sbjct: 121 GTCPAPAGLDWVCVSPKAGAPLRLTTGDELKLVFPQPGAGPELFAGLEFGHHLLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E NT A+ YC +P+WRLS+QTHK +GIR
Sbjct: 181 HREANTRAALDYCLAHPRWRLSIQTHKILGIR 212
>gi|152981565|ref|YP_001353700.1| organic radical activating enzyme [Janthinobacterium sp. Marseille]
gi|151281642|gb|ABR90052.1| organic radical activating enzyme [Janthinobacterium sp. Marseille]
Length = 211
Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 122/210 (58%), Positives = 146/210 (69%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEG HAGR AVFCRFSGCNLW+GRE DR +A C+FCDTDFVG G
Sbjct: 1 MTYSVKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGRESDRATAVCQFCDTDFVGTNGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LA I W +Y V TGGEPLLQ+D LI A++ GFEIA+ETNG
Sbjct: 61 GGKFVDGSTLAHTINALWPESYAASKYVVFTGGEPLLQLDTELIDAMHAVGFEIAIETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P G+DWICVSPK G L ++ G ELK+V PQ S Y +FE F +QPMDGP
Sbjct: 121 TLPVPAGVDWICVSPKMGSQLVVRKGSELKVVIPQAEQSLAAYEALEFEHFFVQPMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E+NT LAI C +NPKW+LS+QTHK + I
Sbjct: 181 AEQNTKLAIDVCKRNPKWKLSLQTHKLLQI 210
>gi|209886114|ref|YP_002289971.1| radical SAM [Oligotropha carboxidovorans OM5]
gi|209874310|gb|ACI94106.1| radical SAM [Oligotropha carboxidovorans OM5]
Length = 210
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 139/211 (65%), Positives = 158/211 (74%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A CRFCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRTAVFCRFAGCNLWTGREQDRADATCRFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGRY D LAD I W G R+ VLTGGEPLLQ+DV LI+AL+ R F IAVETNG
Sbjct: 61 GGRYATADALADQIAATWGEGT-THRFVVLTGGEPLLQIDVELIEALHARHFMIAVETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P G+DWICVSPKA +L I+ G ELKLV+PQ +PE+Y F FSLQPMDGP
Sbjct: 120 TLPAPPGLDWICVSPKADTELAIRQGHELKLVYPQAENTPEDYAALAFAHFSLQPMDGPD 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L +NT AI YC ++P+WRLSVQTHK IGIR
Sbjct: 180 LAQNTERAIDYCLRHPQWRLSVQTHKTIGIR 210
>gi|197106204|ref|YP_002131581.1| hypothetical protein PHZ_c2743 [Phenylobacterium zucineum HLK1]
gi|196479624|gb|ACG79152.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 241
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 130/209 (62%), Positives = 147/209 (70%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR A C FCDTDFVG+ G
Sbjct: 32 MSYAVKEIFLTLQGEGGQAGRPAVFCRFAGCNLWSGREEDREKAVCTFCDTDFVGMDGPG 91
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ E G R VLTGGEPLLQVD LI+AL+ RGF IA+ETNGT
Sbjct: 92 GGRFADAAALAAAIEAQWAGGPNDRLVVLTGGEPLLQVDEALIEALHARGFSIALETNGT 151
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDWICVSPKA + GQELKLVFPQ PE + DFERF LQPMDGP
Sbjct: 152 LPVPPGIDWICVSPKADAPVVQTRGQELKLVFPQEKALPERFEHLDFERFLLQPMDGPDR 211
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT AI+YC +P+WRLSVQTHK++GI
Sbjct: 212 AANTRAAIAYCLAHPRWRLSVQTHKYLGI 240
>gi|89901390|ref|YP_523861.1| organic radical activating-like protein [Rhodoferax ferrireducens
T118]
gi|89346127|gb|ABD70330.1| Organic radical activating enzymes-like [Rhodoferax ferrireducens
T118]
Length = 211
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 110/210 (52%), Positives = 145/210 (69%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEG HAGR AVFCRF+GCNLWSG E R SA C+FCDTDFVG G
Sbjct: 1 MTYSVKEIFYTLQGEGHHAGRPAVFCRFAGCNLWSGAEDSRASAVCQFCDTDFVGTDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + + LA I + W +Y V TGGEPLLQ++ LI A++ GFE+A+ETNG
Sbjct: 61 GGKFRDAETLAAAINQLWPASYPASKYVVFTGGEPLLQLNAALIDAMHDAGFEVAIETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P+G+DW+CVSPK G L ++ G E+K+V PQ ++Y F+ + +Q MDGP
Sbjct: 121 TLPVPEGVDWVCVSPKMGSALVVRAGNEIKVVIPQAGQVLDDYACLAFDHYFVQAMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+EN +AI YC +P+W+LS+QTHK + I
Sbjct: 181 QKENLRMAIDYCKAHPQWKLSLQTHKLLQI 210
>gi|113867905|ref|YP_726394.1| organic radical activating enzyme [Ralstonia eutropha H16]
gi|113526681|emb|CAJ93026.1| organic radical activating enzyme [Ralstonia eutropha H16]
Length = 211
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 152/211 (72%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR SA C+FCDTDFVG GT+
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRASAVCQFCDTDFVGTDGTR 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y ++LA ++ +W G V TGGEPLLQ+D PLI AL+ +GFEIA+ETNG
Sbjct: 61 GGKYRTAEELAAVVASEWPQGAGGQPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI P GIDW+CVSPK G +L + G ELK+V PQ Y DF F +Q MDGP
Sbjct: 121 TIAVPPGIDWVCVSPKMGSELVVTRGDELKVVIPQEGQDFAAYEQLDFRHFLVQAMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
ENT A+++C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211
>gi|299067500|emb|CBJ38699.1| conserved protein of unknown function (Organic radical activating
enzymes) [Ralstonia solanacearum CMR15]
Length = 212
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 124/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT
Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAICQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG+Y D LAD + QW GR V TGGEPLLQ+D LI AL+ RGFEIA+ETN
Sbjct: 61 GGKYPTADALADTVAAQWPVAATGGRPLVVCTGGEPLLQLDRLLIDALHARGFEIAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT+ P GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP
Sbjct: 121 GTLAVPDGIDWVCVSPKLGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT LA+ C + P+W LS+QTHK +GIR
Sbjct: 181 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 212
>gi|295688231|ref|YP_003591924.1| radical SAM domain-containing protein [Caulobacter segnis ATCC
21756]
gi|295430134|gb|ADG09306.1| Radical SAM domain protein [Caulobacter segnis ATCC 21756]
Length = 210
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 126/208 (60%), Positives = 146/208 (70%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIFLTLQGEGG AG+ AVFCRFSGCNLWSGREQDR A C FCDTDFVG G
Sbjct: 1 MTYSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGEN 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ E TG + R V TGGEP LQ+D I AL+ RGF+IAVE+NGT
Sbjct: 61 GGKFATADDLAAAVEAQWTGGPDDRLVVCTGGEPFLQLDEAAIAALHARGFQIAVESNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I+ P IDWIC+SPKA + GQELKLVFPQ PE + DFERF LQPMDGP
Sbjct: 121 IQAPPEIDWICISPKADAPVVQTSGQELKLVFPQEKAMPERFADLDFERFYLQPMDGPDR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ NT LA++YC +P+WRLSVQTHK++G
Sbjct: 181 DRNTQLAVAYCLSHPQWRLSVQTHKYLG 208
>gi|115522971|ref|YP_779882.1| hypothetical protein RPE_0946 [Rhodopseudomonas palustris BisA53]
gi|115516918|gb|ABJ04902.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length = 210
Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats.
Identities = 131/210 (62%), Positives = 149/210 (70%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFTGCNLWSGREDDRAAATCQFCDTDFVGTDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY G+ RY VLTGGEPLLQVD LI+AL+ RGF I VETNGT
Sbjct: 61 GGRYLSASDLAEAIAAQWRGDAASRYVVLTGGEPLLQVDDALIEALHDRGFSIGVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
PP+ IDW+CVSPKAG +L ++ G ELKLV+PQ PE + FERFSLQPMDGP
Sbjct: 121 QMPPEDIDWVCVSPKAGTELTLRYGDELKLVYPQEGAEPELFEALAFERFSLQPMDGPDA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N AI YC +P+WRLSVQTHK +GIR
Sbjct: 181 AANIQAAIDYCLSHPQWRLSVQTHKTLGIR 210
>gi|241662994|ref|YP_002981354.1| hypothetical protein Rpic12D_1394 [Ralstonia pickettii 12D]
gi|309782087|ref|ZP_07676817.1| GntS [Ralstonia sp. 5_7_47FAA]
gi|240865021|gb|ACS62682.1| conserved hypothetical protein [Ralstonia pickettii 12D]
gi|308919153|gb|EFP64820.1| GntS [Ralstonia sp. 5_7_47FAA]
Length = 212
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 123/212 (58%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+
Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ 60
Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG+Y D LAD + +W G+ V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61 GGKYTTADALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GTI P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF+ F LQ MDGP
Sbjct: 121 GTITVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT A+ C + P+WRLS+QTHK +GIR
Sbjct: 181 LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212
>gi|316932735|ref|YP_004107717.1| Radical SAM domain-containing protein [Rhodopseudomonas palustris
DX-1]
gi|315600449|gb|ADU42984.1| Radical SAM domain protein [Rhodopseudomonas palustris DX-1]
Length = 210
Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats.
Identities = 135/210 (64%), Positives = 159/210 (75%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLW+GREQDR A C+FCDTDF+G GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWTGREQDRDEATCKFCDTDFIGTDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY +L + TG+ RY V+TGGEPLLQ+D LI AL+ RGF I VETNGT
Sbjct: 61 GGRYAGAELLADTIAEQWTGDPRKRYVVITGGEPLLQLDGELIAALHTRGFAIGVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
IEPP GIDW+CVSPKAG +L+I+ G ELKLV+PQ PE + DFERFSLQPMDGP
Sbjct: 121 IEPPDGIDWLCVSPKAGAELRIRRGDELKLVYPQPGAMPEQFAALDFERFSLQPMDGPER 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
++NT AI+YC +P+WRLS+QTHK GIR
Sbjct: 181 DDNTTRAIAYCLMHPQWRLSLQTHKITGIR 210
>gi|187928417|ref|YP_001898904.1| hypothetical protein Rpic_1329 [Ralstonia pickettii 12J]
gi|187725307|gb|ACD26472.1| conserved hypothetical protein [Ralstonia pickettii 12J]
Length = 212
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 122/212 (57%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT+
Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRATAVCQFCDTDFVGTDGTQ 60
Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVL-TGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG+Y + LAD + +W G+ V+ TGGEPLLQ+D PLI AL+ RGFEIA+ETN
Sbjct: 61 GGKYTTAEALADTVAAEWPASATGGKPLVICTGGEPLLQLDKPLIDALHARGFEIAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GTI P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF+ F LQ MDGP
Sbjct: 121 GTIAVPEGIDWVCVSPKMGSELVVTRGDELKVVIPQDGQDLDAYERLDFQHFFLQAMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT A+ C + P+WRLS+QTHK +GIR
Sbjct: 181 LARQNTAAAVELCQRRPRWRLSLQTHKMLGIR 212
>gi|288942462|ref|YP_003444702.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
180]
gi|288897834|gb|ADC63670.1| radical SAM domain-containing protein [Allochromatium vinosum DSM
180]
Length = 215
Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats.
Identities = 127/214 (59%), Positives = 145/214 (67%), Gaps = 5/214 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KE F TLQGEG AGR AVFCRFSGCNLWSGREQDR A CRFCDTDF G G
Sbjct: 1 MSYWVKESFYTLQGEGAQAGRAAVFCRFSGCNLWSGREQDRDRAICRFCDTDFRGTDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEG----RYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
GGRY + D LA+ + W TG Y V TGGEPLLQ+D PLI AL+ GFE+AV
Sbjct: 61 GGRYRDADVLAEHLRALWPTGAGADASDRPYVVCTGGEPLLQLDAPLIDALHGSGFEVAV 120
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
ETNGT P G+DWICVSPKAG + G ELKL++PQ + PE + G F F LQPM
Sbjct: 121 ETNGTRPAPPGLDWICVSPKAGATTVLIEGDELKLIYPQPGLEPERFEGLGFRHFFLQPM 180
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
DGP NT LA+ YC P+WRLS+QTHK++GI
Sbjct: 181 DGPQSNANTRLAVDYCKARPRWRLSLQTHKWLGI 214
>gi|317404069|gb|EFV84524.1| hypothetical protein HMPREF0005_04153 [Achromobacter xylosoxidans
C54]
Length = 210
Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats.
Identities = 119/209 (56%), Positives = 145/209 (69%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y+ KEIF TLQGEG HAGR AVFCRF+GCNLW+GRE DR SA C FCDTDF+G G
Sbjct: 1 MTYTAKEIFKTLQGEGAHAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFIGTDGDG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ +L E + RY V TGGEPLLQ+D L+ ++ RGF +A+ETNGT
Sbjct: 61 GGKFASPELLADAIEAAWGPDTANRYIVFTGGEPLLQLDEALLAVVHARGFTVAIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
++PP GIDWICVSPK + I+ G ELKLV+PQ N P + DF+ F LQPMDGP
Sbjct: 121 VQPPPGIDWICVSPKGTAPVVIERGNELKLVYPQANALPPRFEHLDFDHFFLQPMDGPAR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 181 LANTEQAVQYCMQHPQWRLSLQTHKYIGI 209
>gi|73541537|ref|YP_296057.1| hypothetical protein Reut_A1848 [Ralstonia eutropha JMP134]
gi|72118950|gb|AAZ61213.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
Length = 211
Score = 267 bits (682), Expect = 8e-70, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 155/211 (73%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG GT+
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTR 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y ++LA + +W G V TGGEPLLQ+D PLI AL+ +GFEIA+ETNG
Sbjct: 61 GGKYRTAEELAGAVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI+ P GIDW+CVSPK G +L ++ G ELK+V PQV Y DF+ F +Q MDGP
Sbjct: 121 TIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFAAYEQLDFQYFLVQAMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
ENT A+++C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR 211
>gi|220926506|ref|YP_002501808.1| radical SAM domain-containing protein [Methylobacterium nodulans
ORS 2060]
gi|219951113|gb|ACL61505.1| radical SAM domain-containing protein [Methylobacterium nodulans
ORS 2060]
Length = 210
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 124/209 (59%), Positives = 149/209 (71%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG G
Sbjct: 1 MSYAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRADAICRFCDTDFVGTDGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ + G ++GRY V TGGEPLLQ+D PL+ A++ RGF AVETNGT
Sbjct: 61 GGRFADAEALAAAIAAAWGGGRDGRYVVFTGGEPLLQLDAPLLAAVHARGFATAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P+G+DWICVSPKAG L+I G ELKLV+PQ + PE+ +G DF F LQPMDGP
Sbjct: 121 QDAPEGLDWICVSPKAGAPLRITRGDELKLVYPQAGLRPEDLVGLDFRHFWLQPMDGPDR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A++YC ++ +WRLS+QTHK IGI
Sbjct: 181 LANTEAAVAYCLRDARWRLSLQTHKLIGI 209
>gi|254418815|ref|ZP_05032539.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3]
gi|196184992|gb|EDX79968.1| hypothetical protein BBAL3_1125 [Brevundimonas sp. BAL3]
Length = 211
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 130/211 (61%), Positives = 150/211 (71%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS KE+FLT+QGEGG AGR AVF RF+GCNLWSGREQDR SA C FCDTDFVG G
Sbjct: 1 MTYSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGREQDRASAVCSFCDTDFVGTDGDG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D LAD + W + + V TGGEPLLQ+D PLI AL+ R FEIA+E+NG
Sbjct: 61 GGKFATADLLADHVAAMWRGRAGDPKLVVCTGGEPLLQLDPPLIAALHARDFEIAIESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P GIDWICVSPKA DL GQELKLV+PQ P+ + FERF LQPMDGP
Sbjct: 121 TLAAPDGIDWICVSPKADADLIQVKGQELKLVYPQAKALPDRFEHLAFERFWLQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
ENT AI YC +P+WRLSVQTHK+IG+R
Sbjct: 181 QAENTAAAIEYCLTHPQWRLSVQTHKYIGVR 211
>gi|300023287|ref|YP_003755898.1| radical SAM protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299525108|gb|ADJ23577.1| Radical SAM domain protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 208
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 118/208 (56%), Positives = 140/208 (67%), Gaps = 1/208 (0%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y++KEIF TLQGEG +AGR AVFCRF+GCNLW+GRE DR A C+FCDTDFVG G G
Sbjct: 1 MYAVKEIFYTLQGEGTNAGRPAVFCRFAGCNLWTGREVDRAKAVCQFCDTDFVGTDGEGG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
GR+ G VLTGGEP+LQVD L+ AL+ RGF IA+ETNGT+
Sbjct: 61 GRFRTADDLARACRAA-CGSDGDMLVVLTGGEPMLQVDQELVDALHARGFTIAIETNGTL 119
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
+ IDWICVSPKAG L+ K G ELKLV+PQ V P +Y F+ LQPMDG E
Sbjct: 120 PVLETIDWICVSPKAGSQLQQKHGHELKLVYPQEGVDPADYADLAFQTRFLQPMDGATRE 179
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A++YC NP WRLS+QTHK +GI
Sbjct: 180 ANTQAAVAYCKANPGWRLSLQTHKLLGI 207
>gi|124265719|ref|YP_001019723.1| hypothetical protein Mpe_A0526 [Methylibium petroleiphilum PM1]
gi|124258494|gb|ABM93488.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 211
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 123/211 (58%), Positives = 152/211 (72%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR A CRFCDT+FVG GT
Sbjct: 1 MTYSVKEVFYTLQGEGSHAGRPAVFCRFAGCNLWSGREADRADAVCRFCDTEFVGTDGTG 60
Query: 62 GGRYNV-DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + + LA + W G+ R+ VLTGGEPLLQVD PLI AL+ + FEIAVETNG
Sbjct: 61 GGKFTIAESLASHVAAHWPAGDAGPRFVVLTGGEPLLQVDAPLIDALHAQRFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
++ P GIDW+CVSPKAG L + GQELK+V PQ + G DF + +QPMDGP
Sbjct: 121 SVPAPPGIDWLCVSPKAGAPLLQRSGQELKVVVPQGGIDLGELDGLDFAQRRVQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L NT+ A+ +C +P+W+LS+QTHK +GIR
Sbjct: 181 LAANTDWAVRWCLAHPRWQLSLQTHKLLGIR 211
>gi|94310513|ref|YP_583723.1| hypothetical protein Rmet_1571 [Cupriavidus metallidurans CH34]
gi|93354365|gb|ABF08454.1| organic radical activating enzyme [Cupriavidus metallidurans CH34]
Length = 211
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 124/211 (58%), Positives = 153/211 (72%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRFSGCNLW+GRE+DR A C+FCDTDFVG GT
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRAAVFCRFSGCNLWTGREEDRARAVCQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y D+LA ++ +W G V TGGEPLLQ+D PLI AL+ RGFEIA+ETNG
Sbjct: 61 GGKYKTADELAAVVAAEWPQGAGGKPLVVCTGGEPLLQLDAPLIGALHARGFEIAIETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TIE P+GIDW+CVSPK G +L +K G ELK+V PQ Y DF+ F +Q MDGP
Sbjct: 121 TIEVPEGIDWVCVSPKMGSELVVKKGDELKVVIPQDGQDFAAYEQLDFQYFMVQAMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT A+ +C ++P+WRLS+QTHK +GIR
Sbjct: 181 ARQNTAAAVEFCQRHPRWRLSLQTHKLLGIR 211
>gi|91787388|ref|YP_548340.1| hypothetical protein Bpro_1494 [Polaromonas sp. JS666]
gi|91696613|gb|ABE43442.1| conserved hypothetical protein [Polaromonas sp. JS666]
Length = 211
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 127/211 (60%), Positives = 146/211 (69%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG +AGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG GT
Sbjct: 1 MSYQVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREQDRATAVCQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + D LA LIE QW ++ R V+TGGEPLLQVDV LI AL+ RGF+IAVETNG
Sbjct: 61 GGKFADADALARLIEAQWPADDRAHRLVVMTGGEPLLQVDVALIAALHARGFQIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI P GIDWICVSPKAG + GQELK+V+PQ F LQPMD
Sbjct: 121 TIAAPAGIDWICVSPKAGAPWIQREGQELKVVWPQAGFELAELEAARFTHRFLQPMDNAR 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT I+ C Q P WRLS+QTHK GIR
Sbjct: 181 RADNTQACIALCMQRPAWRLSLQTHKITGIR 211
>gi|302558410|ref|ZP_07310752.1| GntS family protein [Streptomyces griseoflavus Tu4000]
gi|302476028|gb|EFL39121.1| GntS family protein [Streptomyces griseoflavus Tu4000]
Length = 213
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 121/213 (56%), Positives = 149/213 (69%), Gaps = 2/213 (0%)
Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + Y IKEIF TLQGEG HAGR AVFCRFS CNLW+GRE DR A C+FCDTDFVG G
Sbjct: 1 MNMTYLIKEIFYTLQGEGSHAGRPAVFCRFSRCNLWTGREADRSRAICQFCDTDFVGTDG 60
Query: 60 TKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
GGR+ + LAD +E W + ++ R+ V TGGEPLLQ+D I AL+ RGFE+AVET
Sbjct: 61 EGGGRFRTAEDLADAVEAAWPSTDRAHRFVVCTGGEPLLQLDEDAIAALHARGFEVAVET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT P GIDW+CVSPK G L + G ELKLV+PQ P + G DF+ LQP+D
Sbjct: 121 NGTRPAPHGIDWLCVSPKIGSQLVLTSGDELKLVYPQAGGDPAQFEGLDFQHLRLQPLDD 180
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E++T A+ YC +NP+W LS+QTHK++GI+
Sbjct: 181 ANREDHTRAAVEYCMKNPRWTLSLQTHKYLGIQ 213
>gi|300704193|ref|YP_003745795.1| hypothetical protein RCFBP_11899 [Ralstonia solanacearum CFBP2957]
gi|299071856|emb|CBJ43184.1| conserved protein of unknown function (Organic radical activating
enzymes) [Ralstonia solanacearum CFBP2957]
Length = 212
Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 125/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT
Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG+Y D LAD + QW GR V TGGEPLLQ+D LI AL+ RGFEIAVETN
Sbjct: 61 GGKYPTADALADTVAAQWPADATGGRPLVVCTGGEPLLQLDRCLIDALHARGFEIAVETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT+ P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP
Sbjct: 121 GTVAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQSGQDLDAYERLDFRHFFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT LA+ C + P+W LS+QTHK +GIR
Sbjct: 181 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 212
>gi|167585085|ref|ZP_02377473.1| organic radical activating enzyme-like protein [Burkholderia
ubonensis Bu]
Length = 210
Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats.
Identities = 113/209 (54%), Positives = 143/209 (68%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQALCRFCDTDFVGTDGEN 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ + R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG+
Sbjct: 61 GGKFKDAAALAAQVASLWPDGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNGS 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ + IDWICVSPKA L + G ELK+V PQ N +Y DF+ F +QPMDGP
Sbjct: 121 LPVLESIDWICVSPKADVPLVVTKGNELKVVIPQDNQRLADYAKLDFDYFLVQPMDGPSR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT LAI +C ++P+WRLS+QTHK++ I
Sbjct: 181 DLNTKLAIDWCKRHPQWRLSMQTHKYLNI 209
>gi|260223401|emb|CBA33932.1| hypothetical protein Csp_B21500 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 225
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 125/211 (59%), Positives = 146/211 (69%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG HAGR AVFCRF+GCNLWSGREQDR +A C+FCDTDFVG GT
Sbjct: 15 MAYQVKEIFYTLQGEGSHAGRPAVFCRFAGCNLWSGREQDRATAVCKFCDTDFVGTDGTL 74
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ LA+ I QW G+ R+ V+TGGEPLLQVD LI AL+ GF+IAVETNG
Sbjct: 75 GGKFSTAQALAERIAAQWPAGDTAHRFVVMTGGEPLLQVDTALIDALHALGFQIAVETNG 134
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P+GIDWICVSPKAG + G ELKLV+PQ ++ E DF+ LQPMD P
Sbjct: 135 TVLVPEGIDWICVSPKAGSQWIQRQGHELKLVWPQAGITLEECEAADFKHRYLQPMDSPQ 194
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N I+ C Q P WRLS+QTHK GIR
Sbjct: 195 RAANIETCITQCMQRPAWRLSLQTHKITGIR 225
>gi|182679140|ref|YP_001833286.1| radical SAM domain-containing protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635023|gb|ACB95797.1| Radical SAM domain protein [Beijerinckia indica subsp. indica ATCC
9039]
Length = 211
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 128/210 (60%), Positives = 145/210 (69%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y++KEIFLTLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG+ G
Sbjct: 1 MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGL 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ E T RY V TGGEPLLQ+D LI+ ++ RGF IAVETNG
Sbjct: 61 GGGRFESASSLADAIETAWTAGPAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI PP G+DWICVSPKAG LKI G ELKLVFPQ + PE + F+ F LQPMD
Sbjct: 121 TIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPEEFRALSFQHFWLQPMDNAN 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
L NT A +YC +P+WRLS+QTHK IGI
Sbjct: 181 LARNTTEATAYCLAHPQWRLSLQTHKLIGI 210
>gi|13474945|ref|NP_106515.1| hypothetical protein msl8680 [Mesorhizobium loti MAFF303099]
gi|14025701|dbj|BAB52301.1| msl8680 [Mesorhizobium loti MAFF303099]
Length = 211
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 121/210 (57%), Positives = 147/210 (70%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG+ G
Sbjct: 1 MSYAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPG 60
Query: 62 GGRYNVDQLADL-IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G ++ + L +E+ W R+ VLTGGEPLLQ+D L++AL+ FEIAVETNG
Sbjct: 61 GRHFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI P GIDW+CVSPK L + G ELKLV+PQ+ PE++ FE LQPMDGP
Sbjct: 121 TIPTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPE 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT A++YC NP+WRLS+QTHKF+GI
Sbjct: 181 REANTAAAVAYCLANPRWRLSLQTHKFLGI 210
>gi|330994295|ref|ZP_08318223.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter
sp. SXCC-1]
gi|329758762|gb|EGG75278.1| 7-carboxy-7-deazaguanine synthase-like protein [Gluconacetobacter
sp. SXCC-1]
Length = 211
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 124/210 (59%), Positives = 148/210 (70%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSG E+DR A CRFCDTDF+G G
Sbjct: 1 MSYTVKEIFPTLQGEGAHAGRTAVFCRFTGCNLWSGLERDRARATCRFCDTDFIGTDGAG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ + LAD I W +++ + V TGGEPLLQ+D LI A++ RGFEIAVETNG
Sbjct: 61 GGRFASASLLADAIAAHWPAPDRKAAFVVFTGGEPLLQLDDALITAVHARGFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P GIDWICVSPKAG L G ELKLV+PQ ++ P G DF +F LQPMD
Sbjct: 121 TLRAPGGIDWICVSPKAGAPLVQTSGHELKLVYPQPDLLPGQVAGLDFSQFWLQPMDNAA 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT A+ YC +P+WRLS+QTHK IGI
Sbjct: 181 RDHNTRAAVDYCLHHPQWRLSLQTHKLIGI 210
>gi|163856911|ref|YP_001631210.1| hypothetical protein Bpet2600 [Bordetella petrii DSM 12804]
gi|163260639|emb|CAP42941.1| conserved hypothetical protein [Bordetella petrii]
Length = 391
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 119/209 (56%), Positives = 139/209 (66%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG G
Sbjct: 182 MTYSTKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAGAVCTFCDTDFVGTDGPG 241
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ + RY V TGGEPLLQ+D L+QA++ GF +A+ETNGT
Sbjct: 242 GGKFASAAQLADAIAAAWGPGTQDRYVVFTGGEPLLQLDAALLQAVHGHGFTVAIETNGT 301
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDWICVSPK + I+ G ELKLV+PQ PE Y DF+ F LQPMDGP
Sbjct: 302 LPAPAGIDWICVSPKGSARVVIERGHELKLVYPQAEARPEAYAHLDFQHFFLQPMDGPAR 361
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A+ YC Q+P+WRLS+QTHK+IGI
Sbjct: 362 AANTQQAVQYCMQHPQWRLSLQTHKYIGI 390
>gi|158422696|ref|YP_001523988.1| hypothetical protein AZC_1072 [Azorhizobium caulinodans ORS 571]
gi|158329585|dbj|BAF87070.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 212
Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats.
Identities = 128/211 (60%), Positives = 150/211 (71%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG+ G
Sbjct: 1 MSYAVKEIFKTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRASAICRFCDTDFVGMDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GGR+ + LA I W GR Y V TGGEPLLQ+D LI+A++ GFEIA+ETN
Sbjct: 61 GGRFADAPSLAATIARTWGEKGAGGRPYVVFTGGEPLLQLDAALIEAVHAEGFEIAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT+ P GIDWICVSPKAG ++ + G ELKLV+PQ V PE G FE + LQPMDGP
Sbjct: 121 GTLPAPAGIDWICVSPKAGAEIVQRTGSELKLVYPQPEVPPEAVAGLTFEHYFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
ENT I+YC +P+WRLS+QTHK GI
Sbjct: 181 ARIENTQAVIAYCLAHPQWRLSLQTHKITGI 211
>gi|85813929|emb|CAF31558.1| putative fortimicin production protein [Micromonospora
olivasterospora]
Length = 212
Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 119/211 (56%), Positives = 143/211 (67%), Gaps = 3/211 (1%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A C+FCDTDFVG G G
Sbjct: 1 MYRVKEIFYTLQGEGSHAGRPAVFCRFTSCNLWTGREEERHRAICQFCDTDFVGTDGPGG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GR+ GE R Y V TGGEPLLQ+D ++AL+ GFE+AVETN
Sbjct: 61 GRFATAAELAAAVVAAWRGEDHPRSRPYVVCTGGEPLLQLDEAAVRALHDAGFEVAVETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT P GIDW+CVSPKAG DL + G +LKLV+PQ P + G DF F LQPMDGP
Sbjct: 121 GTRPAPPGIDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPARFEGLDFAHFMLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211
>gi|237745834|ref|ZP_04576314.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS]
gi|229377185|gb|EEO27276.1| organic radical activating enzyme [Oxalobacter formigenes HOxBLS]
Length = 234
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 120/208 (57%), Positives = 146/208 (70%), Gaps = 1/208 (0%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
YS+KEIF TLQGEG GR AVFCRFSGCNLWSGREQDR A CRFCDTDFVG G +GG
Sbjct: 26 YSVKEIFYTLQGEGARTGRPAVFCRFSGCNLWSGREQDRARAICRFCDTDFVGTSGERGG 85
Query: 64 RYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
++ ++LA +I W E RY V TGGEPLLQ+D PLI +++ GFEIA+ETNGTI
Sbjct: 86 KFPEAEKLASVIISLWPREHAENRYVVFTGGEPLLQLDRPLIGIMHRAGFEIAIETNGTI 145
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+G+DW+CVSPK G L +K G ELK+V PQ + +Y F F +QPMDG E
Sbjct: 146 PVPEGVDWVCVSPKVGSTLVVKSGDELKVVIPQAGQNLADYEDLSFSHFYVQPMDGENRE 205
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
N +AI C +NPKW+L +QTHK++ I
Sbjct: 206 RNIKMAIDTCLKNPKWKLGLQTHKYLQI 233
>gi|237748637|ref|ZP_04579117.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13]
gi|229379999|gb|EEO30090.1| organic radical activating enzyme [Oxalobacter formigenes OXCC13]
Length = 219
Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats.
Identities = 122/209 (58%), Positives = 146/209 (69%), Gaps = 1/209 (0%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
YS+KEIF TLQGEG +GR AVFCRFSGCNLWSGRE DR + CRFCDTDFVG G G
Sbjct: 10 TYSVKEIFYTLQGEGARSGRPAVFCRFSGCNLWSGREADRSRSVCRFCDTDFVGTDGVNG 69
Query: 63 GRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ + L+ IE W G E RY V TGGEPLLQ+D LI A++ +GFEIA+ETNGT
Sbjct: 70 GKFAQAEDLSSFIESLWPAGFMENRYVVFTGGEPLLQLDAALIDAMHGKGFEIAIETNGT 129
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDW+CVSPKAG DL + GG ELK+V PQ +Y F F +QPMDG
Sbjct: 130 LAVPDGIDWVCVSPKAGADLAVAGGDELKVVVPQPGQILADYESLAFTHFYVQPMDGENR 189
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+N +AI C QNPKW+LS+QTHK++ I
Sbjct: 190 LQNVKIAIDTCLQNPKWKLSLQTHKYLQI 218
>gi|103488122|ref|YP_617683.1| hypothetical protein Sala_2645 [Sphingopyxis alaskensis RB2256]
gi|98978199|gb|ABF54350.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
Length = 210
Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats.
Identities = 125/210 (59%), Positives = 148/210 (70%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG GR AVFCRF+GCNLWSGRE DR ++ C FCDTDFVG+ G+
Sbjct: 1 MSYAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ DQ E G + RY VLTGGEPLLQVD L+ AL+ RGFEIA+ETNGT
Sbjct: 61 GGRFADDQALADAIESEWAGARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
P+G+DWICVSPKA +L + G ELKLV+PQ +PE + FE F LQPMD P
Sbjct: 121 QPAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPERFEHLAFEHFFLQPMDSPTA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N AI+YC QNP+WRLS+Q+HK IGIR
Sbjct: 181 AANLEAAITYCTQNPRWRLSLQSHKMIGIR 210
>gi|170748800|ref|YP_001755060.1| hypothetical protein Mrad2831_2382 [Methylobacterium radiotolerans
JCM 2831]
gi|170655322|gb|ACB24377.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 210
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 120/209 (57%), Positives = 143/209 (68%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ G
Sbjct: 1 MAYAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAAAACRFCDTDFVGMDGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ G E RY V TGGEPLLQ+D PLI+A++ GFEIA+ETNGT
Sbjct: 61 GGRFADAASLADAIAATWAGGAENRYVVFTGGEPLLQLDTPLIEAVHAAGFEIAIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDWICVSPK L G ELKLV+PQ + P ++G F+ LQPMDGP
Sbjct: 121 LPAPPGIDWICVSPKGSNALAQVSGHELKLVYPQADADPAAFVGLAFQHRFLQPMDGPDR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T AI+YC ++ +WRLS+QTHK IGI
Sbjct: 181 AASTEAAIAYCRRDARWRLSLQTHKMIGI 209
>gi|326318538|ref|YP_004236210.1| Radical SAM domain-containing protein [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375374|gb|ADX47643.1| Radical SAM domain protein [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 212
Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats.
Identities = 129/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAICRFCDTDFVGTDGTL 60
Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y D LAD+I QW + + R VLTGGEPLLQ+D PLI AL+ RG IAVE+NG
Sbjct: 61 GGKYAQADALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
T+ P GIDW+CVSPKAG + GQELKLV+PQ FE LQPMDGP
Sbjct: 121 TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELENATRFEHRFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT+L I+ C + P WRLS+QTHK GIR
Sbjct: 181 EQAANTSLCIAACMERPAWRLSLQTHKLTGIR 212
>gi|121603954|ref|YP_981283.1| hypothetical protein Pnap_1045 [Polaromonas naphthalenivorans CJ2]
gi|120592923|gb|ABM36362.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
Length = 211
Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats.
Identities = 126/211 (59%), Positives = 144/211 (68%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG HAGR A+FCRF+GCNLWSGRE DR +A CRFCDTDFVG GT
Sbjct: 1 MSYQVKEIFYTLQGEGSHAGRPAIFCRFAGCNLWSGREPDRATAVCRFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ N + LA IE QW G+ R+ V+TGGEPLLQVD LI AL+ RGF IAVETNG
Sbjct: 61 GGKFKNAEALAGCIEAQWPAGDSAHRFVVMTGGEPLLQVDGALIAALHARGFVIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI P GIDWICVSPKAG + G ELK+V+PQ + F LQPMD P
Sbjct: 121 TIAAPPGIDWICVSPKAGAPWIQREGHELKVVWPQPALDWAELEAARFTHRYLQPMDNPA 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT I+ C +NP WRLS+QTHK GIR
Sbjct: 181 WRNNTEACIALCLENPAWRLSLQTHKITGIR 211
>gi|58039977|ref|YP_191941.1| hypothetical protein GOX1543 [Gluconobacter oxydans 621H]
gi|58002391|gb|AAW61285.1| Hypothetical protein GOX1543 [Gluconobacter oxydans 621H]
Length = 213
Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats.
Identities = 124/212 (58%), Positives = 146/212 (68%), Gaps = 3/212 (1%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+F+TLQGEG GR +VFCRF+GCNLWSGREQDR +A C FCDTDF+G G
Sbjct: 1 MSYAVKEMFVTLQGEGAQTGRASVFCRFAGCNLWSGREQDRATAACSFCDTDFIGTDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
GGR+ D LAD I W E RY V TGGEPLLQ+D LI A+ RGFEIAVET
Sbjct: 61 GGRFETADALADTIAACWTSTADESGRRYVVFTGGEPLLQLDDALIAAVKARGFEIAVET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGTI P GIDW+CVSPK G L G ELKLV+PQ + PE + F F LQPMDG
Sbjct: 121 NGTIAAPAGIDWVCVSPKPGGALVQTEGAELKLVYPQPELPPEMFEKLSFRHFWLQPMDG 180
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P NT A+++C ++P+WRLS+QTHK IGI
Sbjct: 181 PDRIANTEAAVAHCLRHPRWRLSLQTHKLIGI 212
>gi|329902674|ref|ZP_08273228.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium
IMCC9480]
gi|327548646|gb|EGF33296.1| Queuosine Biosynthesis QueE Radical SAM [Oxalobacteraceae bacterium
IMCC9480]
Length = 207
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 1/205 (0%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG G GG++
Sbjct: 2 KEIFYTLQGEGTHAGRPAVFCRFAGCNLWSGRESDRATAVCQFCDTDFVGTDGVMGGKFA 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ + LA + W ++ V+TGGEP+LQ+D+ LI AL+ +GF IA+ETNGT+ P
Sbjct: 62 DAESLAATVNSLWPADYPASKFIVITGGEPMLQLDLALIDALHAQGFMIAIETNGTLPVP 121
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+DWICVSPK G L + G ELK+V PQ+ Y DFE F LQPMD P NT
Sbjct: 122 PEVDWICVSPKMGSKLVQRSGNELKVVIPQLGQDLLMYEALDFEHFYLQPMDSPTAARNT 181
Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
AI +C ++PKW+LSVQTHK + I
Sbjct: 182 ERAIDHCKRHPKWKLSVQTHKILQI 206
>gi|33596287|ref|NP_883930.1| hypothetical protein BPP1653 [Bordetella parapertussis 12822]
gi|33602051|ref|NP_889611.1| hypothetical protein BB3075 [Bordetella bronchiseptica RB50]
gi|33566056|emb|CAE36954.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33576489|emb|CAE33567.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 210
Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats.
Identities = 115/209 (55%), Positives = 140/209 (66%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE+F TLQGEG AGR AVFCRF+GCNLW+GRE DR A C FCDTDFVG G
Sbjct: 1 MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ RY V TGGEPLLQ+D L+QA++ +GF +A+ETNGT
Sbjct: 61 GGKFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ PP GIDWICVSPK + ++ G ELKLVFPQ + PE + FE F LQPMDGP
Sbjct: 121 LPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPAR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T A+ YC +P+WRLS+QTHK+IGI
Sbjct: 181 AAHTAQAVQYCLDHPQWRLSLQTHKYIGI 209
>gi|20804093|emb|CAD31296.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A]
Length = 211
Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 120/208 (57%), Positives = 145/208 (69%), Gaps = 1/208 (0%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG+ G GG
Sbjct: 3 YAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRARAFCEFCDTDFVGVDGPGGG 62
Query: 64 RY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + A +E+ W R VLTGGEPLLQ+D L++AL+ FEIAVETNGTI
Sbjct: 63 HFATAQEFALAVEQAWRGSGTRQRLVVLTGGEPLLQIDEELLEALHSLAFEIAVETNGTI 122
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
GIDW+CVSPK L + G ELKLV+P++ PE++ FE LQPMDGP E
Sbjct: 123 PTLAGIDWLCVSPKCNARLVVMAGDELKLVYPRIGAEPEHFEVLAFEHLLLQPMDGPERE 182
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A++YC NP+WRLS+QTHKF+GI
Sbjct: 183 ANTAAAVAYCLANPRWRLSLQTHKFLGI 210
>gi|148253795|ref|YP_001238380.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1]
gi|146405968|gb|ABQ34474.1| hypothetical protein BBta_2298 [Bradyrhizobium sp. BTAi1]
Length = 210
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 130/210 (61%), Positives = 150/210 (71%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF+TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG GT
Sbjct: 1 MSYAVKEIFMTLQGEGALAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGTDGTF 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY+ TG RY +LTGGEPLLQVD LI AL+ R F + +ETNGT
Sbjct: 61 GGRYDDAAALAAAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHARDFAVGIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ PP GIDWICVSPKAG +LK++ G ELKLV+PQ PE + F+RFSLQPMDGP
Sbjct: 121 LIPPDGIDWICVSPKAGAELKLQQGHELKLVYPQDGAEPERFADLAFQRFSLQPMDGPEA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT AI YC +P+WRLS+QTHK IGIR
Sbjct: 181 AANTARAIQYCQHHPQWRLSLQTHKMIGIR 210
>gi|146339025|ref|YP_001204073.1| hypothetical protein BRADO1974 [Bradyrhizobium sp. ORS278]
gi|146191831|emb|CAL75836.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 210
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 131/210 (62%), Positives = 152/210 (72%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF+TLQGEG AGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG+ GT
Sbjct: 1 MSYAVKEIFMTLQGEGAQAGRAAVFCRFAGCNLWSGREADRATATCRFCDTDFVGVDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGRY TG RY +LTGGEPLLQVD LI AL+ +GF + +ETNGT
Sbjct: 61 GGRYETAAALAEAIAGQWTGGAADRYTILTGGEPLLQVDADLIAALHAQGFAVGIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ PP GIDWICVSPKAG +LK++ G ELKLV+PQ P+ + G FERFSLQPMDGP
Sbjct: 121 LIPPDGIDWICVSPKAGAELKLRHGHELKLVYPQAGTEPDKFEGLAFERFSLQPMDGPDA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT AI YC + P+WRLS+QTHK IGIR
Sbjct: 181 AANTARAIHYCQRRPQWRLSLQTHKMIGIR 210
>gi|224824585|ref|ZP_03697692.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
gi|224603078|gb|EEG09254.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
Length = 209
Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats.
Identities = 124/209 (59%), Positives = 146/209 (69%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y++KEIF TLQGEG AGR AVFCRF+GCNLWSG+E+ R A C+FCDTDFVG G
Sbjct: 1 MYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGKERHRAKAICQFCDTDFVGTGPDGG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+QLA+ I W G + V TGGEPLLQ+D PLI AL+ RGFEIAVETNGT+
Sbjct: 61 KFKTAEQLAERIAGAWPAGAGGTPFVVCTGGEPLLQLDAPLIDALHARGFEIAVETNGTV 120
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P GIDW+CVSPKAG L G ELKLV+PQ + PE+ G F+ F LQPMDGP +
Sbjct: 121 AAPPGIDWLCVSPKAGAPLLQTSGHELKLVYPQPTLMPESVAGLAFQNFYLQPMDGPDVA 180
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT AI+YC P+WRLSVQTHK + IR
Sbjct: 181 ANTRAAIAYCMAQPQWRLSVQTHKVLNIR 209
>gi|34498964|ref|NP_903179.1| hypothetical protein CV_3509 [Chromobacterium violaceum ATCC 12472]
gi|34104813|gb|AAQ61170.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 211
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 126/211 (59%), Positives = 144/211 (68%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR A C+FCDTDFVG
Sbjct: 1 MTTYTVKEIFYTLQGEGRQAGRAAVFCRFAGCNLWSGREEDRAKAVCQFCDTDFVGAGPD 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G LA I +W Y V TGGEPLLQ+D LI AL+ +GFEIAVETNG
Sbjct: 61 GGKFDGAAALAARIAAEWPKDAGGSPYVVCTGGEPLLQLDAELIGALHAQGFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P G+DWICVSPKAG +LK + G ELKLV+PQ PE DF F LQPMDGP
Sbjct: 121 TVAAPAGLDWICVSPKAGAELKQRAGDELKLVYPQAAQMPETVADLDFGTFYLQPMDGPE 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L NT AI+YC +P+WRLSVQTHK + IR
Sbjct: 181 LAANTRAAIAYCMAHPQWRLSVQTHKVVDIR 211
>gi|187478511|ref|YP_786535.1| hypothetical protein BAV2019 [Bordetella avium 197N]
gi|115423097|emb|CAJ49628.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 210
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 125/210 (59%), Positives = 144/210 (68%), Gaps = 2/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS KEIF TLQGEG AGR AVFCRFSGCNLWSGRE DR +A C FCDTDFVG G
Sbjct: 1 MTYSAKEIFKTLQGEGAQAGRAAVFCRFSGCNLWSGRESDRAAAACTFCDTDFVGSDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LAD I W RY V TGGEPLLQ+D LI A++ +GF IA+ETNG
Sbjct: 61 GGKFRDAQALADTIARTWGPDRAG-RYVVFTGGEPLLQLDEALIDAVHAQGFTIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P G+DWICVSPK + GQELKLVFPQV PE + G DFE F LQP+D P
Sbjct: 120 TLPVPAGVDWICVSPKGRAPVVQTRGQELKLVFPQVEAPPEAFAGLDFEHFFLQPLDSPL 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T A+ YC +P+WRLSVQTHK+IGI
Sbjct: 180 RRAHTEAAVQYCMAHPQWRLSVQTHKYIGI 209
>gi|33593629|ref|NP_881273.1| hypothetical protein BP2659 [Bordetella pertussis Tohama I]
gi|33563702|emb|CAE42935.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
Length = 210
Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats.
Identities = 115/209 (55%), Positives = 140/209 (66%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE+F TLQGEG AGR AVFCRF+GCNLW+GRE DR A C FCDTDFVG G
Sbjct: 1 MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ RY V TGGEPLLQ+D L+QA++ +GF +A+ETNGT
Sbjct: 61 GGKFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ PP GIDWICVSPK + ++ G ELKLVFPQ + PE + FE F LQPMDGP
Sbjct: 121 LPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPAR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T A+ YC +P+WRLS+QTHK+IGI
Sbjct: 181 AAHTTQAVQYCLDHPQWRLSLQTHKYIGI 209
>gi|120612485|ref|YP_972163.1| hypothetical protein Aave_3844 [Acidovorax citrulli AAC00-1]
gi|120590949|gb|ABM34389.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
Length = 212
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 128/212 (60%), Positives = 146/212 (68%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLWSGRE+DR SA CRFCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTL 60
Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG+Y + LAD+I QW + + R VLTGGEPLLQ+D PLI AL+ RG IAVE+NG
Sbjct: 61 GGKYAQAEALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
T+ P GIDW+CVSPKAG + GQELKLV+PQ FE LQPMDGP
Sbjct: 121 TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELESATRFEHRFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L I+ C + P WRLS+QTHK GIR
Sbjct: 181 DQAANTGLCIAACMERPAWRLSLQTHKLTGIR 212
>gi|83859604|ref|ZP_00953124.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii
HTCC2633]
gi|83851963|gb|EAP89817.1| hypothetical protein OA2633_06384 [Oceanicaulis alexandrii
HTCC2633]
Length = 209
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 122/210 (58%), Positives = 151/210 (71%), Gaps = 3/210 (1%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE+FLT+QGEGG GR AVF RF+GCNLWSG E+DR SA C+FCDTDFVG+ G
Sbjct: 1 MTYSVKEMFLTVQGEGGQTGRPAVFLRFAGCNLWSGLERDRASAICQFCDTDFVGVDGVN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + LAD + W G + Y V TGGEPLLQ+D PLI AL++ GF IAVETNG
Sbjct: 61 GGKFKTAEALADKVASLWPGGGEP--YVVCTGGEPLLQLDAPLIDALHEAGFRIAVETNG 118
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI+ P+GIDW+CVSPK+ LK G ELKLV+PQ PE + G DF++F LQPMDGP
Sbjct: 119 TIKAPEGIDWVCVSPKSTAPLKQTSGDELKLVYPQPEAMPELFSGLDFKQFRLQPMDGPD 178
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+N A YC Q+P+W LS+QTHK+I +
Sbjct: 179 QMKNAQAAFEYCLQHPQWMLSLQTHKWINV 208
>gi|154247119|ref|YP_001418077.1| hypothetical protein Xaut_3190 [Xanthobacter autotrophicus Py2]
gi|154161204|gb|ABS68420.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
Length = 211
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 127/210 (60%), Positives = 150/210 (71%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+FLTLQGEG AGR AVFCRF+GCNLWSGRE DR AQCRFCDTDFVG+ G
Sbjct: 1 MAYAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEG 60
Query: 62 GGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ W + E R+ V TGGEPLLQ+D L+ A++ GFEIAVETNG
Sbjct: 61 GGRFADAATLAAAIAATWGSAAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T++ P GIDWIC+SPKAG DLK+ G ELKLVFPQ ++PE G DF F LQPMDGP
Sbjct: 121 TVDAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPEGLAGLDFTHFFLQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A++YC +P+WRLS+QTHK IGI
Sbjct: 181 RLRNTEAAVAYCLSHPRWRLSLQTHKMIGI 210
>gi|296445573|ref|ZP_06887529.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
gi|296256978|gb|EFH04049.1| Radical SAM domain protein [Methylosinus trichosporium OB3b]
Length = 210
Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats.
Identities = 121/210 (57%), Positives = 141/210 (67%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE F TLQGEG H GR AVFCRF+GCNLWSGRE DR A CRFCDTDFVG G
Sbjct: 1 MAYAVKEAFKTLQGEGRHVGRAAVFCRFAGCNLWSGREIDRAEAVCRFCDTDFVGTNGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ GE+E R+ VLTGGEP+LQ+D L+ AL+ GFEIA+ETNGT
Sbjct: 61 GGRFETAAALAAHLAGLWGGERERRFVVLTGGEPMLQIDAALVDALHDAGFEIAIETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
P IDWICVSPKAG L G ELKLV+PQ PE + G F+ F LQPMDGP
Sbjct: 121 RAAPSEIDWICVSPKAGAPLVQSSGDELKLVYPQPGAEPELFEGLAFDHFLLQPMDGPEA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT A+ YC +P+WR S+QTHK IG+R
Sbjct: 181 AQNTRAAVDYCLAHPRWRFSLQTHKTIGVR 210
>gi|153876026|ref|ZP_02003554.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152067510|gb|EDN66446.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 209
Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats.
Identities = 118/210 (56%), Positives = 149/210 (70%), Gaps = 3/210 (1%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF +LQGEG GR A+FCRF+GCNLWSGRE+DR A C+FCDT+F+G G
Sbjct: 1 MSYSVKEIFYSLQGEGHQTGRAAIFCRFAGCNLWSGREEDRSIASCQFCDTNFIGTNGQN 60
Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ LA+ + + + TGGEPLLQ+D PLI+A + GFEIA+ETNG
Sbjct: 61 GGKFTSAQALAEKVATIGMMKHFP--LIICTGGEPLLQLDEPLIKAFHHIGFEIAIETNG 118
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P IDWICVSPK LK++ G ELKLVFPQ N PE + FDF+ F LQPMDGP
Sbjct: 119 TLPAPPNIDWICVSPKGNAPLKLQTGNELKLVFPQPNAPPELFEQFDFQYFFLQPMDGPE 178
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
L++NT LA+ YC ++P+WRLS+QTHK +GI
Sbjct: 179 LKKNTQLALRYCLEHPQWRLSLQTHKLLGI 208
>gi|217977590|ref|YP_002361737.1| radical SAM domain protein [Methylocella silvestris BL2]
gi|217502966|gb|ACK50375.1| radical SAM domain protein [Methylocella silvestris BL2]
Length = 211
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 121/210 (57%), Positives = 147/210 (70%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE+DR +A C FCDTDF+G G
Sbjct: 1 MGRYAVKEIFPTLQGEGAQAGRAAVFCRFAGCNLWSGREKDRAAAACPFCDTDFIGTDGP 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG + + E G GRY V TGGEPLLQ+D LI A++ RGFE AVETNG
Sbjct: 61 GGGVFGGAEELAGAIEAAWLGGPAGRYVVFTGGEPLLQLDDALIAAVHARGFEAAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+EPP G+DW+CVSPKAG + + G ELKLV+PQ ++ P+ G F F LQPMDG
Sbjct: 121 TLEPPAGVDWLCVSPKAGAPIVVTAGSELKLVYPQDDLLPDALSGLQFAHFWLQPMDGAN 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ NT A++YC +P WRLS+QTHK IGI
Sbjct: 181 VDANTKAAVAYCLAHPDWRLSLQTHKLIGI 210
>gi|148554323|ref|YP_001261905.1| organic radical activating-like protein [Sphingomonas wittichii
RW1]
gi|148499513|gb|ABQ67767.1| Organic radical activating enzymes-like protein [Sphingomonas
wittichii RW1]
Length = 210
Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats.
Identities = 130/212 (61%), Positives = 151/212 (71%), Gaps = 3/212 (1%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y++KE+FLTLQGEG GR AVF RF+GCNLWSGRE+DR AQCRFCDTDFVG+ G
Sbjct: 1 MAGYAVKEMFLTLQGEGVQVGRRAVFLRFAGCNLWSGREEDRADAQCRFCDTDFVGLDGD 60
Query: 61 KGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GGRY D LAD W G+ G + V+TGGEPLLQVD L+ AL RGFE AVETN
Sbjct: 61 NGGRYPHADALADKAIALW--GDLAGAFIVMTGGEPLLQVDDALVAALKARGFETAVETN 118
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT P GIDWICVSPKAG D+ ++ G ELKLV+PQ + P G+DFE F LQPMDG
Sbjct: 119 GTQPAPAGIDWICVSPKAGTDIVLRRGNELKLVWPQPGIDPAALEGWDFEHFLLQPMDGA 178
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L+E AI+Y +P+WRLS QTHK +GIR
Sbjct: 179 QLDEARAAAIAYVMDHPRWRLSTQTHKVVGIR 210
>gi|41019307|gb|AAR98565.1| GntS [Micromonospora echinospora]
Length = 212
Score = 257 bits (656), Expect = 9e-67, Method: Composition-based stats.
Identities = 117/211 (55%), Positives = 140/211 (66%), Gaps = 3/211 (1%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A CRFCDTDFVG G G
Sbjct: 1 MYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDGPGG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GR+ G+ R Y V TGGEPLLQ+D + AL+ GFE+AVETN
Sbjct: 61 GRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAVETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT P GIDW CVSPKAG ++ + G +LKLV+PQ P + DF F LQPMDGP
Sbjct: 121 GTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 181 DRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 211
>gi|160897280|ref|YP_001562862.1| hypothetical protein Daci_1837 [Delftia acidovorans SPH-1]
gi|160362864|gb|ABX34477.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
Length = 212
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 125/212 (58%), Positives = 150/212 (70%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG A+FCRF+GCNLW+GREQDR SA C+FCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGTPAIFCRFTGCNLWTGREQDRASAICQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D LA+ I QW G+ + R VLTGGEPLLQVD PLI AL+ RGF I+VE+NG
Sbjct: 61 GGKFATADALAERILSQWPAGDSQHRMVVLTGGEPLLQVDEPLIAALHARGFRISVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGP 179
T+ P+GIDW+C+SPKAG + + GQELKLV+PQ G F+R+ LQPMD
Sbjct: 121 TVAAPEGIDWLCISPKAGAEWVQRSGQELKLVWPQPGFDLQAIEAGTRFDRYFLQPMDNV 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT I+ C Q P WRLS+QTHK GIR
Sbjct: 181 LQADNTAACIAQCLQRPAWRLSLQTHKLTGIR 212
>gi|162148726|ref|YP_001603187.1| hypothetical protein GDI_2954 [Gluconacetobacter diazotrophicus PAl
5]
gi|209545507|ref|YP_002277736.1| hypothetical protein Gdia_3395 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787303|emb|CAP56897.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209533184|gb|ACI53121.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 211
Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats.
Identities = 131/210 (62%), Positives = 155/210 (73%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y+IKE+F TLQGEG HAGR AVFCRF+GCNLWSGRE DR +A CRFCDTDFVG GT
Sbjct: 1 MSYAIKEMFATLQGEGAHAGRAAVFCRFAGCNLWSGREADRATAVCRFCDTDFVGTDGTG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ + LAD I W +E + V TGGEPLLQ+D LI A+++RGFEIAVETNG
Sbjct: 61 GGRFADASSLADAIAATWEAPGREHAFVVFTGGEPLLQLDDALIGAVHERGFEIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P G+DWICVSPKAG DL + G ELKLV+PQ ++ PE G DF +F LQPMDGP
Sbjct: 121 TLPVPPGVDWICVSPKAGADLVQRTGHELKLVYPQPDLLPERVAGLDFRQFWLQPMDGPA 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A++YC +P+WRLS+QTHK IGI
Sbjct: 181 QAANTAAAVAYCRAHPRWRLSLQTHKLIGI 210
>gi|329889514|ref|ZP_08267857.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC
11568]
gi|328844815|gb|EGF94379.1| radical SAM domain-containing protein [Brevundimonas diminuta ATCC
11568]
Length = 211
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 121/211 (57%), Positives = 150/211 (71%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS KE+FLT+QGEGG AGR AVF RF+GCNLWSG E+DR +A C FCDTDFVG+ G
Sbjct: 1 MTYSAKEVFLTVQGEGGQAGRPAVFLRFAGCNLWSGLERDRATAICTFCDTDFVGVNGDG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D +AD + W E + + V TGGEPL+Q+D LI AL+ RGFEIA+E+NG
Sbjct: 61 GGKFKTADLMADHVAGMWRGREGDPKLVVCTGGEPLMQLDTLLIDALHARGFEIAIESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P+GIDWIC+SPKA + GQELKLV+PQ P+ + DF+ F LQPMDGP
Sbjct: 121 TLVAPEGIDWICISPKADAPVVQTSGQELKLVYPQPLAMPDRFESLDFQHFWLQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT AI YC +P+WRLSVQTHK+IG+R
Sbjct: 181 QAANTAAAIEYCLTHPQWRLSVQTHKYIGVR 211
>gi|304320027|ref|YP_003853670.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis
HTCC2503]
gi|303298930|gb|ADM08529.1| hypothetical protein PB2503_02257 [Parvularcula bermudensis
HTCC2503]
Length = 213
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 121/209 (57%), Positives = 140/209 (66%), Gaps = 2/209 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y+IKE + TLQGEG AGR AVF RF+GCNLWSGRE DR A CRFCDTDFVG G
Sbjct: 6 MSYAIKECYYTLQGEGAQAGRAAVFLRFAGCNLWSGREIDREEAICRFCDTDFVGTDGPG 65
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ ++LA + W G Y V TGGEPLLQ+D PLI AL+ GFEI VETNGT
Sbjct: 66 GGRFVAEELAAHVASFWPGG--GSPYVVATGGEPLLQLDSPLIDALHDEGFEIGVETNGT 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I P G+DWICVSPK+ +L G ELKLVFPQ + P+ + G F+ F LQPMDGP+
Sbjct: 124 IAAPAGLDWICVSPKSTAELVQTEGDELKLVFPQSDAPPDQFSGLAFDHFFLQPMDGPYQ 183
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ YC NP WRLS+QTHK IGI
Sbjct: 184 SIAIATTVDYCRANPLWRLSLQTHKLIGI 212
>gi|85814032|emb|CAF31448.1| putative gentamicin production protein [Micromonospora echinospora]
Length = 215
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 118/214 (55%), Positives = 141/214 (65%), Gaps = 4/214 (1%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE++R A CRFCDTDFVG G
Sbjct: 1 MTGVYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEERYRAICRFCDTDFVGTDG 60
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
GGR+ G+ R Y V TGGEPLLQ+D + AL+ GFE+AV
Sbjct: 61 PGGGRFGTAAELAAAVAAAWQGQAHPRSRPYVVCTGGEPLLQLDEAAVSALHDAGFEVAV 120
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
ETNGT P GIDW CVSPKAG ++ + G +LKLV+PQ P + DF F LQPM
Sbjct: 121 ETNGTRPAPPGIDWTCVSPKAGAEVVLTRGDDLKLVYPQPGAEPARFEHLDFTHFMLQPM 180
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
DGP NT A+ YC ++P+WRLS+QTHK+IGI
Sbjct: 181 DGPDRVANTEAAVRYCLEHPQWRLSLQTHKYIGI 214
>gi|224038930|gb|ACN38359.1| putative sisomicin production protein [Micromonospora inyonensis]
Length = 215
Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 118/214 (55%), Positives = 142/214 (66%), Gaps = 4/214 (1%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M +Y IKEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C+FCDTDFVG G
Sbjct: 1 MTGVYRIKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREEDRHRAICQFCDTDFVGTDG 60
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
GGR+ G+ R Y V TGGEPLLQ+D + AL++ GFE+AV
Sbjct: 61 PGGGRFATAAELAAAVATAWRGQAHPRSRPYVVCTGGEPLLQLDEAAVAALHEAGFEVAV 120
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
ETNGT P G+DW+CVSPKAG DL + G +LKLV+PQ P + DF F LQPM
Sbjct: 121 ETNGTRPAPPGLDWVCVSPKAGADLVLTRGDDLKLVYPQPGAEPGRFEHLDFTHFMLQPM 180
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
DGP NT A+ YC ++P+WR S+QTHK+IGI
Sbjct: 181 DGPDRVANTEAAVRYCLEHPQWRFSLQTHKYIGI 214
>gi|323135766|ref|ZP_08070849.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC
49242]
gi|322398857|gb|EFY01376.1| hypothetical protein Met49242DRAFT_0236 [Methylocystis sp. ATCC
49242]
Length = 210
Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats.
Identities = 120/211 (56%), Positives = 147/211 (69%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KE F T+QGEG +AGRVAVFCRF+GCNLWSGRE+DR A C FCDT+F G+ G
Sbjct: 1 MAYFVKEAFRTVQGEGVNAGRVAVFCRFAGCNLWSGREEDRAEAACNFCDTEFTGVDGEG 60
Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ +LAD + W + E R+ VLTGGEP+LQVD L+ AL+ GFEIA+E+NG
Sbjct: 61 GGKFPGARELADHLVAIW-GADDEDRFIVLTGGEPMLQVDPALVDALHNEGFEIAIESNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI GIDWICVSPKAG + G ELKLV+PQ V P + DF F LQPMDGP
Sbjct: 120 TIAAAPGIDWICVSPKAGAPIVQTSGSELKLVYPQPGVDPATFERLDFRHFLLQPMDGPE 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ NT A+ YC +P+WRLS+QTHK IG+R
Sbjct: 180 IVRNTKAAVDYCLAHPRWRLSLQTHKMIGVR 210
>gi|83749823|ref|ZP_00946794.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551]
gi|207723445|ref|YP_002253844.1| organic radical activating enzyme protein [Ralstonia solanacearum
MolK2]
gi|207743201|ref|YP_002259593.1| organic radical activating enzyme protein [Ralstonia solanacearum
IPO1609]
gi|83723503|gb|EAP70710.1| Queuosine biosynthesis protein QueE [Ralstonia solanacearum UW551]
gi|206588646|emb|CAQ35609.1| organic radical activating enzyme protein [Ralstonia solanacearum
MolK2]
gi|206594598|emb|CAQ61525.1| organic radical activating enzyme protein [Ralstonia solanacearum
IPO1609]
Length = 224
Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats.
Identities = 125/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG + GR AVFCRF+GCNLWSGRE DR +A C+FCDTDFVG GT
Sbjct: 13 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAVCQFCDTDFVGTDGTL 72
Query: 62 GGRY-NVDQLADLIEEQWIT-GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GG+Y D LADL+ QW V TGGEPLLQ+D PLI AL+ RGFEIAVETN
Sbjct: 73 GGKYATADALADLVAAQWPADATGGQPLVVCTGGEPLLQLDRPLIDALHARGFEIAVETN 132
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT+ P+GIDW+CVSPK G +L + G ELK+V PQ + Y DF F LQPMDGP
Sbjct: 133 GTVAVPEGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 192
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT LA+ C + P+W LS+QTHK +GIR
Sbjct: 193 LARQNTALAVELCQRRPRWHLSLQTHKMLGIR 224
>gi|319795394|ref|YP_004157034.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315597857|gb|ADU38923.1| Radical SAM domain protein [Variovorax paradoxus EPS]
Length = 212
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 128/212 (60%), Positives = 147/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GRE+DR SA CRFCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRASAVCRFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ DQLAD I QW + E R VLTGGEPLLQVD L+ AL+ R F IAVE+NG
Sbjct: 61 GGKFKTADQLADTIAAQWPANDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
T+ P+GIDW+C+SPKAG + GQELKLV+PQ + DF LQPMDGP
Sbjct: 121 TVAAPEGIDWLCISPKAGAPWVQQRGQELKLVWPQTAFDLDAMARTGDFTHRFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L I+ C + P WRLSVQTHK GIR
Sbjct: 181 DRVANTELCIAECMRQPAWRLSVQTHKITGIR 212
>gi|89093158|ref|ZP_01166108.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92]
gi|89082454|gb|EAR61676.1| hypothetical protein MED92_03737 [Oceanospirillum sp. MED92]
Length = 210
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 112/209 (53%), Positives = 140/209 (66%), Gaps = 1/209 (0%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+YS+KEIF +LQGEG +GR ++FCRF+GCNLWSGREQDR A C FCDTDF+G G G
Sbjct: 1 MYSVKEIFFSLQGEGAQSGRASIFCRFAGCNLWSGREQDREKAVCDFCDTDFIGTDGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ L + ++E W Y + TGGEP LQ+D LI ++ GFE+AVETNGT
Sbjct: 61 GKFETAQALCNFLQEFWPNNSSIPPYIIFTGGEPALQLDQDLIDCCHEYGFEVAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
P GIDW+CVSPKA +L I G ELKLV+PQ PE + +F F LQPMDGP
Sbjct: 121 KPLPSGIDWVCVSPKADAELVITKGDELKLVYPQALAMPEKFASLNFRHFYLQPMDGPAR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ T I YC Q+PKW+LS+Q HK +GI
Sbjct: 181 QLYTKEVIDYCLQHPKWKLSLQNHKVLGI 209
>gi|114328969|ref|YP_746126.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis
CGDNIH1]
gi|114317143|gb|ABI63203.1| queuosine biosynthesis protein QueE [Granulibacter bethesdensis
CGDNIH1]
Length = 220
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 122/207 (58%), Positives = 143/207 (69%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGRE+DR A C FCDTDF+G+ G GG
Sbjct: 13 YTVKEIFLTLQGEGIHAGRPAVFCRFAGCNLWSGREEDRQMAGCTFCDTDFIGMDGENGG 72
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
RY G E R+ VLTGGEPLLQVD LI AL++ F+IAVETNGT
Sbjct: 73 RYPDAASLARAIAACWQGGAEHRFVVLTGGEPLLQVDAALIDALHEAHFQIAVETNGTQP 132
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
P G+DWICVSPKA L + GG ELKLVFPQ + PE + +F F LQP+D +
Sbjct: 133 APAGLDWICVSPKADNPLVLTGGDELKLVFPQPDAPPERFEALNFRHFLLQPLDDSRRAD 192
Query: 184 NTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T AI YC +P+WRLSVQTHK +GI
Sbjct: 193 HTRAAIEYCLHHPRWRLSVQTHKTLGI 219
>gi|312113885|ref|YP_004011481.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC
17100]
gi|311219014|gb|ADP70382.1| hypothetical protein Rvan_1111 [Rhodomicrobium vannielii ATCC
17100]
Length = 213
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 117/213 (54%), Positives = 145/213 (68%), Gaps = 4/213 (1%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y++KEIF TLQGEG GR AVF RF+GCNLW+G+ +D+ A CRFCDTDFVG G G
Sbjct: 1 MYTVKEIFPTLQGEGAQVGRAAVFLRFAGCNLWTGQHKDKSKAFCRFCDTDFVGYDGPNG 60
Query: 63 GRY-NVDQLADLIEEQW---ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
G++ DQLAD++ W G+ Y V TGGEP LQ+D P+I AL KRGF +A+E+
Sbjct: 61 GKFETADQLADIVLGMWNSLTKGKTASPYVVCTGGEPTLQLDTPMIDALKKRGFTVAIES 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT P+G+DWIC+SPKAG L + G ELKLV+PQ P+ + FE F LQPMDG
Sbjct: 121 NGTRPAPRGLDWICISPKAGVPLAQREGNELKLVYPQTGALPQLFERLKFEHFFLQPMDG 180
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
P +N AI YC NP WRLS+Q HK +GIR
Sbjct: 181 PQHRDNIEAAIRYCMANPPWRLSMQMHKLVGIR 213
>gi|226228044|ref|YP_002762150.1| hypothetical protein GAU_2638 [Gemmatimonas aurantiaca T-27]
gi|226091235|dbj|BAH39680.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 212
Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 117/212 (55%), Positives = 138/212 (65%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE F TLQGEG +AGR AVFCRFSGCNLW+GRE DR A C FCDTDFVG+
Sbjct: 1 MAYTVKECFYTLQGEGVNAGRAAVFCRFSGCNLWTGREADRHKATCTFCDTDFVGVGPDG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
G LA ++ +W + V TGGEPLLQ+D I AL+ GFEIAVETN
Sbjct: 61 GKFATAAALAAFVKSRWPVDAPGSARPFVVCTGGEPLLQLDEAAIDALHAEGFEIAVETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
GT P G+DWICVSPKA + + G ELKLVFPQ PE + +F F LQPMD P
Sbjct: 121 GTQPAPAGLDWICVSPKADAPVVLTRGDELKLVFPQEQARPERFASLEFAHFLLQPMDDP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
ENT A++YC +P+WRLSVQTHK +GIR
Sbjct: 181 QAAENTRAALAYCLAHPQWRLSVQTHKVLGIR 212
>gi|296115261|ref|ZP_06833901.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC
23769]
gi|295978164|gb|EFG84902.1| hypothetical protein GXY_05748 [Gluconacetobacter hansenii ATCC
23769]
Length = 211
Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats.
Identities = 121/210 (57%), Positives = 141/210 (67%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A CRFCDTDF+G G
Sbjct: 1 MSYTVKEIFPTLQGEGSQAGRAAVFCRFAGCNLWSGREIDRDDATCRFCDTDFIGTDGMG 60
Query: 62 GGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ + + V TGGEPLLQ+D L+ A++ RGF IAVETNG
Sbjct: 61 GGRFADAASLADAIAAAWPAASRRDAFVVFTGGEPLLQLDAALVAAMHARGFFIAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI P GIDWIC+SPKAG L G ELKLVFPQ ++ PE G DF +F LQPMDGP
Sbjct: 121 TIRAPDGIDWICMSPKAGAPLVQTSGHELKLVFPQPDLMPEQVAGLDFAQFWLQPMDGPE 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT+ A+ YC +P+WRLS+QTHK IGI
Sbjct: 181 RVSNTSHAVEYCMAHPQWRLSLQTHKLIGI 210
>gi|163850651|ref|YP_001638694.1| hypothetical protein Mext_1221 [Methylobacterium extorquens PA1]
gi|163662256|gb|ABY29623.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
Length = 212
Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 142/211 (67%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G
Sbjct: 1 MSYAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ ++ G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT
Sbjct: 61 GGRFASAEILADAIAATWAGGTSNRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGP 179
+ P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP
Sbjct: 121 LPAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T A++YC N +WRLS+QTHK IGI
Sbjct: 181 DAAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211
>gi|90422441|ref|YP_530811.1| hypothetical protein RPC_0922 [Rhodopseudomonas palustris BisB18]
gi|90104455|gb|ABD86492.1| Radical SAM [Rhodopseudomonas palustris BisB18]
Length = 210
Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats.
Identities = 129/210 (61%), Positives = 153/210 (72%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIFLTLQGEG HAGR AVFCRF+GCNLWSGR+ DR +A+C+FCDTDFVG GT
Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGRDSDRETAKCQFCDTDFVGTDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G RY + TG+ + RY VLTGGEPLLQ+D LI AL+ RGF + VETNGT
Sbjct: 61 GDRYASAAELAAVIASQWTGDDKFRYVVLTGGEPLLQLDAKLIAALHGRGFGVGVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ PP GIDW+CVSPKAG DL ++ G ELKLV+PQ PE + FERFSLQPMDG
Sbjct: 121 LAPPDGIDWLCVSPKAGADLVLRRGNELKLVYPQRGALPELFADLGFERFSLQPMDGAEA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT AI+YC +P+WRLS+QTHK +GIR
Sbjct: 181 AANTASAIAYCLAHPQWRLSLQTHKTLGIR 210
>gi|114319183|ref|YP_740866.1| radical SAM domain-containing protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114225577|gb|ABI55376.1| Radical SAM domain protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 209
Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats.
Identities = 119/210 (56%), Positives = 141/210 (67%), Gaps = 3/210 (1%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+ EI TLQGEG GR AVFCRF+GCNLWSGRE R SA CRFCDT FVG G+
Sbjct: 1 MTYSVHEIHYTLQGEGAQTGRPAVFCRFAGCNLWSGREAHRASAICRFCDTAFVGTGGSG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ + ++LA+ + W G + V TGGEPLLQ+D LI AL++RGFE+AVETNG
Sbjct: 61 GGRFRSANELAERLAGYWPGGGRP--LVVCTGGEPLLQLDSALIDALHRRGFEVAVETNG 118
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T P G+DWICVSPKAG L + G ELKLV PQ PE + F F LQPMDGP
Sbjct: 119 TRPAPAGLDWICVSPKAGAPLVLTTGDELKLVHPQPGAEPERFQHLAFRHFFLQPMDGPE 178
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT + YC +P+W LS+QTHK +GI
Sbjct: 179 REANTQACVDYCLAHPQWSLSLQTHKLLGI 208
>gi|221065388|ref|ZP_03541493.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
gi|220710411|gb|EED65779.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
Length = 212
Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 122/212 (57%), Positives = 143/212 (67%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR +A C+FCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRPNAICQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NG
Sbjct: 61 GGKFATADALAERILSQWPADDSLHRMVVLTGGEPLLQVDEALIAALHARGFRISVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179
T+ P+GIDW+C+SPKAG D + GQELKLV+PQ DF+ + LQPMD
Sbjct: 121 TVAAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTDFQHYFLQPMDNA 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N I C Q P WRLS+QTHK GIR
Sbjct: 181 QQSGNITACIEQCMQRPGWRLSLQTHKLTGIR 212
>gi|218529375|ref|YP_002420191.1| hypothetical protein Mchl_1382 [Methylobacterium chloromethanicum
CM4]
gi|240137705|ref|YP_002962176.1| hypothetical protein MexAM1_META1p1004 [Methylobacterium extorquens
AM1]
gi|218521678|gb|ACK82263.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
gi|240007673|gb|ACS38899.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
Length = 212
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 142/211 (67%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G
Sbjct: 1 MSYAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ ++ G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT
Sbjct: 61 GGRFASAEILADAIAATWAGGTANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGP 179
+ P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP
Sbjct: 121 LPAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T A++YC N +WRLS+QTHK IGI
Sbjct: 181 DAAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211
>gi|299531400|ref|ZP_07044808.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44]
gi|298720563|gb|EFI61512.1| hypothetical protein CTS44_11451 [Comamonas testosteroni S44]
Length = 212
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 121/212 (57%), Positives = 144/212 (67%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D+LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NG
Sbjct: 61 GGKFTTADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHARGFRISVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179
T+ P+GIDW+C+SPKAG D + GQELKLV+PQ +F+ + LQPMD
Sbjct: 121 TVTAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNA 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N I+ C Q P WRLS+QTHK GIR
Sbjct: 181 QQSSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212
>gi|239817064|ref|YP_002945974.1| hypothetical protein Vapar_4095 [Variovorax paradoxus S110]
gi|239803641|gb|ACS20708.1| conserved hypothetical protein [Variovorax paradoxus S110]
Length = 212
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 124/212 (58%), Positives = 147/212 (69%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GRE+DR +A CRFCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREEDRATAVCRFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ N + LAD I QW + E R VLTGGEPLLQVD L+ AL+ R F IAVE+NG
Sbjct: 61 GGKFKNAELLADTIAAQWPAEDAEHRLVVLTGGEPLLQVDAALVDALHARRFRIAVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
T+ P+GIDW+C+SPKAG + GQELKLV+ Q + +F LQPMDGP
Sbjct: 121 TVAAPEGIDWLCISPKAGAPWVQQRGQELKLVWRQTEFDLDTMARTGEFTHRFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L I+ C ++P WRLSVQTHK GIR
Sbjct: 181 DRVANTELCIAECMRHPAWRLSVQTHKITGIR 212
>gi|87308581|ref|ZP_01090721.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM
3645]
gi|87288673|gb|EAQ80567.1| hypothetical protein DSM3645_14515 [Blastopirellula marina DSM
3645]
Length = 211
Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats.
Identities = 118/209 (56%), Positives = 143/209 (68%), Gaps = 1/209 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEI+ TLQGEG +GR AVFCRF+GCNLWSGREQDR SA C+FCDT FVG G
Sbjct: 1 MKYFVKEIYYTLQGEGAKSGRPAVFCRFTGCNLWSGREQDRASAICQFCDTQFVGTDGPG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG + + +LA + +W + V TGGEPLLQ+D +I+AL+ GFE+AVETNG
Sbjct: 61 GGVFRSALELAGAVAAKWPESWNANKMVVCTGGEPLLQLDEAVIEALHDEGFEVAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T PP GIDWI VSPKA + ++ G ELKLVFPQ P Y DF+ F LQPMDG
Sbjct: 121 TKIPPPGIDWISVSPKANAECILRAGDELKLVFPQPGGEPTKYENLDFDHFFLQPMDGLS 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIG 209
E+NT LA YC ++P+W LS+QTHK IG
Sbjct: 181 REQNTQLAAQYCLKHPQWELSIQTHKLIG 209
>gi|264679996|ref|YP_003279905.1| hypothetical protein CtCNB1_3863 [Comamonas testosteroni CNB-2]
gi|262210511|gb|ACY34609.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
Length = 212
Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 121/212 (57%), Positives = 144/212 (67%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWTGREQDRPKAICQFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D+LA+ I QW + R VLTGGEPLLQVD LI AL+ RGF I+VE+NG
Sbjct: 61 GGKFATADELAERILGQWPADDSRHRMVVLTGGEPLLQVDQALIAALHVRGFRISVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG-FDFERFSLQPMDGP 179
T+ P+GIDW+C+SPKAG D + GQELKLV+PQ +F+ + LQPMD
Sbjct: 121 TVAAPEGIDWLCISPKAGADWIQRSGQELKLVWPQPTFDLAAIEASTEFQHYFLQPMDNA 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N I+ C Q P WRLS+QTHK GIR
Sbjct: 181 QQSSNIAACIAQCMQRPGWRLSLQTHKLTGIR 212
>gi|114569269|ref|YP_755949.1| radical SAM domain-containing protein [Maricaulis maris MCS10]
gi|114339731|gb|ABI65011.1| Radical SAM domain protein [Maricaulis maris MCS10]
Length = 209
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 123/209 (58%), Positives = 143/209 (68%), Gaps = 3/209 (1%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE FLT+QGEG AGR AVF RFSGCNLWSGREQDR A C FCDTDFVG+ G
Sbjct: 1 MSYSVKERFLTVQGEGAQAGRPAVFLRFSGCNLWSGREQDRHKAVCNFCDTDFVGMDGPG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGR+ L D + E W G + V TGGEPLLQ+D LI AL+ RGFEIAVETNG
Sbjct: 61 GGRFKTAVSLVDAVAELWPGGGRP--LVVCTGGEPLLQLDTSLIDALHARGFEIAVETNG 118
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P GIDWI VSPK + G ELKLV+PQ + P + +DF+RFSLQPMDGP
Sbjct: 119 TVRAPDGIDWITVSPKGTAPVVQTSGHELKLVYPQPELDPTAFEDWDFKRFSLQPMDGPQ 178
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ EN A YC +P+W LS+QTHK+IG
Sbjct: 179 MMENAQAAFDYCLAHPQWSLSLQTHKWIG 207
>gi|254560274|ref|YP_003067369.1| hypothetical protein METDI1804 [Methylobacterium extorquens DM4]
gi|254267552|emb|CAX23394.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 212
Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats.
Identities = 122/211 (57%), Positives = 142/211 (67%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+F TLQGEG AGR AVFCRFSGCNLWSGRE+DR A CRFCDTDFVG+ G
Sbjct: 1 MSYAVKELFHTLQGEGAQAGRAAVFCRFSGCNLWSGREEDRAGAACRFCDTDFVGMDGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ ++ G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT
Sbjct: 61 GGRFASAEILAGAIAATWAGGTANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGP 179
+ P GIDWICVSPKAG L G ELKLVFPQ +PE + F LQPMDGP
Sbjct: 121 LPAPPGIDWICVSPKAGNPLVQTSGDELKLVFPQAEAEAAPERFSDLPFRHHFLQPMDGP 180
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T A++YC N +WRLS+QTHK IGI
Sbjct: 181 DAAAHTAAAVAYCRSNARWRLSLQTHKIIGI 211
>gi|83649266|ref|YP_437701.1| organic radical activating protein [Hahella chejuensis KCTC 2396]
gi|83637309|gb|ABC33276.1| Organic radical activating enzyme [Hahella chejuensis KCTC 2396]
Length = 217
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 117/217 (53%), Positives = 145/217 (66%), Gaps = 10/217 (4%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y +KE F TLQGEG H GR AVFCRFS CNLW+GRE+DR A C FCDTDF+G+ G G
Sbjct: 1 MYRVKEAFYTLQGEGAHQGRPAVFCRFSKCNLWTGREKDRAGAVCNFCDTDFIGVDGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ ++LAD I W E++ R+ V TGGEPLLQ+D PLI+A + RGFE+AVETNGT
Sbjct: 61 GKFATAEELADHILAFWPP-EQDNRFVVCTGGEPLLQLDEPLIEAFHARGFEVAVETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDW+CVSPK ++ I ELKLV+PQ PE + R L PM P +
Sbjct: 120 LPAPAGIDWLCVSPKGRAEVVITECDELKLVYPQPEAPPERFSDIRAGRHYLSPMANPLV 179
Query: 182 EE--------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT LA+ YC ++PKWRLSVQ HK +GI
Sbjct: 180 REGNDEQKRRNTQLAMEYCMRHPKWRLSVQLHKILGI 216
>gi|258542252|ref|YP_003187685.1| hypothetical protein APA01_11580 [Acetobacter pasteurianus IFO
3283-01]
gi|256633330|dbj|BAH99305.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
gi|256636389|dbj|BAI02358.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
gi|256639442|dbj|BAI05404.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
gi|256642498|dbj|BAI08453.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
gi|256645553|dbj|BAI11501.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
gi|256648606|dbj|BAI14547.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
gi|256651659|dbj|BAI17593.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654650|dbj|BAI20577.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
Length = 216
Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats.
Identities = 124/215 (57%), Positives = 146/215 (67%), Gaps = 6/215 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE DR A C+FCDTDF+G G
Sbjct: 1 MTYSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREADRDKAICQFCDTDFIGTDGIN 60
Query: 62 GGRY-NVDQLADLIEEQWI-----TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
GG++ N +LA I W T + V TGGEPLLQ+D LI A++ +GF IA
Sbjct: 61 GGKFENAAELAATIASFWPQPTEDTKATGQKLVVFTGGEPLLQLDTALIDAMHAQGFSIA 120
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
VE+NGT+ P+GIDW+C+SPKAG +L K G ELKLVFPQ + P DF+ F LQP
Sbjct: 121 VESNGTVMAPEGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPAALENLDFQHFWLQP 180
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
MDGP NT AI YC +P W LS+QTHK IGI
Sbjct: 181 MDGPQQAVNTQAAIEYCLAHPLWGLSLQTHKLIGI 215
>gi|329113419|ref|ZP_08242200.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum
DM001]
gi|326697244|gb|EGE48904.1| 7-carboxy-7-deazaguanine synthase-like protein [Acetobacter pomorum
DM001]
Length = 216
Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 124/215 (57%), Positives = 148/215 (68%), Gaps = 6/215 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIFLTLQGEGG AGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDF+G G
Sbjct: 1 MTYSVKEIFLTLQGEGGQAGRAAVFCRFTGCNLWSGREEDRATATCQFCDTDFIGTDGIN 60
Query: 62 GGRY-NVDQLADLIEEQWI-----TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
GG++ N LA I W + V TGGEPLLQ+D LI A++ +GF IA
Sbjct: 61 GGKFENAADLAATIASFWPQPTQDVKATGQKLVVFTGGEPLLQLDTALINAMHAQGFTIA 120
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
VE+NGTI P+GIDW+C+SPKAG +L K G ELKLVFPQ + P + DF+ F LQP
Sbjct: 121 VESNGTIAAPKGIDWLCISPKAGAELVQKAGTELKLVFPQPGIDPASVENLDFQHFWLQP 180
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
MDGP NT AI YC ++P W LS+QTHK IGI
Sbjct: 181 MDGPQQAANTQAAIEYCLEHPLWGLSLQTHKLIGI 215
>gi|103486840|ref|YP_616401.1| hypothetical protein Sala_1354 [Sphingopyxis alaskensis RB2256]
gi|98976917|gb|ABF53068.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
Length = 210
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 120/211 (56%), Positives = 142/211 (67%), Gaps = 2/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIFLTLQGEG AGR AVFCRF+GCNLW+GREQDR A CRFCDTDFVG GT
Sbjct: 1 MAYSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTL 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G +Y + LAD+I E W G + RY VLTGGEP+LQVD LI AL+ RGF IA+E+NG
Sbjct: 61 GAKYRDAAALADVIAESWGPGS-DDRYVVLTGGEPMLQVDDALIDALHARGFTIAIESNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P+ IDWICVSPKAG +L G ELKLV+PQ DF +QP+D
Sbjct: 120 TLPIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAKLAALDFRHLLVQPLDDRN 179
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N I +P+WRLS+QTHK +G+R
Sbjct: 180 AAANVQACIDLVMADPRWRLSLQTHKSLGLR 210
>gi|326795520|ref|YP_004313340.1| radical SAM protein [Marinomonas mediterranea MMB-1]
gi|326546284|gb|ADZ91504.1| Radical SAM domain protein [Marinomonas mediterranea MMB-1]
Length = 216
Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 112/216 (51%), Positives = 146/216 (67%), Gaps = 9/216 (4%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y++KE F +LQGEG HAGR A+FCRF+GCNLWSG+E+ RLSA C+FCDTDF G+ G G
Sbjct: 1 MYNVKESFYSLQGEGAHAGRPAIFCRFTGCNLWSGKEKHRLSADCQFCDTDFNGVNGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GR+ + D+LA I QW G +Y V TGGEP LQ+D LI A+ GF +A+ETNGT
Sbjct: 61 GRFKSADELAKHIANQWPQGH-GNKYVVFTGGEPALQLDQALISAVKSYGFMVAIETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P IDWICVSPK L + G ELK V+PQ N++P++Y G +FE F LQPMD +
Sbjct: 120 LRLPDNIDWICVSPKTTDPLVVNAGNELKFVYPQTNLNPKDYEGLEFEHFYLQPMDLSAV 179
Query: 182 EE-------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + YC +NP WR+S+QTHK + I
Sbjct: 180 PKQNIIASDTQSATLKYCLENPLWRISLQTHKMLNI 215
>gi|126665591|ref|ZP_01736573.1| Organic radical activating enzyme [Marinobacter sp. ELB17]
gi|126630219|gb|EBA00835.1| Organic radical activating enzyme [Marinobacter sp. ELB17]
Length = 218
Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats.
Identities = 115/218 (52%), Positives = 138/218 (63%), Gaps = 11/218 (5%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G
Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCDFCDTDFVGTDGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G + + LA I W Y V TGGEPLLQ+D PLI AL++ GFEI VETNGT
Sbjct: 61 GVFATPEALAAHIAGLWPVA-PGKPYVVCTGGEPLLQLDSPLINALHQAGFEIGVETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDW+CVSPKA + I+ ELKLV+PQ+ PE ++ + F L PM P +
Sbjct: 120 LPAPAGIDWLCVSPKADAPVVIERCNELKLVYPQLKAMPERFLHIQADHFFLSPMASPSV 179
Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT A YC NP+WRL++Q HK IGI
Sbjct: 180 PETSTDVIKQSNTRRATDYCLANPRWRLTLQMHKIIGI 217
>gi|46203559|ref|ZP_00209018.1| COG0602: Organic radical activating enzymes [Magnetospirillum
magnetotacticum MS-1]
Length = 229
Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats.
Identities = 120/209 (57%), Positives = 141/209 (67%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+F TLQGEG AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG+ G
Sbjct: 20 MSYAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAGAACRFCDTDFVGLDGEG 79
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ + G RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT
Sbjct: 80 GGRFASAEALAGAIAATWAGGAAHRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGT 139
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDWICVSPKAG L G ELKLV+PQ +PE + F LQPMDGP
Sbjct: 140 LAAPPGIDWICVSPKAGNALIQTSGDELKLVYPQAEAAPELFADLPFRHRFLQPMDGPEA 199
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A++YC + +WRLS+QTHK IGI
Sbjct: 200 AANTAAAVAYCRADARWRLSLQTHKIIGI 228
>gi|120553050|ref|YP_957401.1| organic radical activating enzyme [Marinobacter aquaeolei VT8]
gi|120322899|gb|ABM17214.1| organic radical activating enzyme [Marinobacter aquaeolei VT8]
Length = 218
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 107/217 (49%), Positives = 135/217 (62%), Gaps = 9/217 (4%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G
Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCNFCDTDFVGTDGQNG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
GR++ + Y V TGGEPLLQ+D PLI+A ++ GFE+ VETNGT+
Sbjct: 61 GRFDTPEALAAHIRSLWPDAPGRPYVVCTGGEPLLQLDEPLIRAFHRAGFEVGVETNGTL 120
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+GIDW+CVSPKA ++ I ELKLV+PQ PE ++ + L PM P +
Sbjct: 121 PAPEGIDWLCVSPKADAEVVIAECDELKLVYPQPLAPPERFLHIRARHYFLSPMASPSVP 180
Query: 183 E---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT A YC +P+WRL++Q HK +GI
Sbjct: 181 EGGPDAIKQSNTRKATDYCLAHPQWRLTLQMHKILGI 217
>gi|307293826|ref|ZP_07573670.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1]
gi|306879977|gb|EFN11194.1| Radical SAM domain protein [Sphingobium chlorophenolicum L-1]
Length = 215
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 108/215 (50%), Positives = 141/215 (65%), Gaps = 5/215 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+FLTLQGEG HAGR AVF RF+GCNLWSGREQDR +A C+FCDTDFVG G
Sbjct: 1 MSYAVKELFLTLQGEGVHAGRRAVFLRFAGCNLWSGREQDRATAICQFCDTDFVGTDGDG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ EGRY VLTGGEP+LQ+D L+ AL+ RGF IAVE+NGT
Sbjct: 61 GGKFADADSLAEAALALWGEGAEGRYIVLTGGEPMLQIDDALVDALHARGFAIAVESNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPM 176
+ G+DW+C+SPKAG ++ + G ELKLV+PQ E+ G+ F+ +QP+
Sbjct: 121 LPAHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHGIADVEDMEGWAFDHLLVQPL 180
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D P N A+ P+WRLS+Q+HK++G+R
Sbjct: 181 DDPDAARNAQAAVDLVLARPRWRLSLQSHKYLGLR 215
>gi|241761735|ref|ZP_04759822.1| organic radical activating enzymes-like protein [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241374043|gb|EER63576.1| organic radical activating enzymes-like protein [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 217
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 111/213 (52%), Positives = 143/213 (67%), Gaps = 5/213 (2%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G GG
Sbjct: 5 YAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGENGG 64
Query: 64 RYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
R+ ++LA+ W + + VLTGGEPLLQVD L+ AL + FEIA+ET
Sbjct: 65 RFTAEELAEQAIRLWKEALESRYQYVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAIET 124
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPMD
Sbjct: 125 NGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPMDD 184
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ +EN AI++ Q P WRLS+Q+HK IG++
Sbjct: 185 EYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217
>gi|311696706|gb|ADP99579.1| organic radical activating enzyme [marine bacterium HP15]
Length = 218
Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 11/218 (5%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G
Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRATAVCNFCDTDFVGTDGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GR+ ++LA I W Y V TGGEPLLQ+D PLI+AL++ GFE+ VETNGT
Sbjct: 61 GRFETPEELARHIRNLWPEA-PGKPYVVCTGGEPLLQLDAPLIEALHREGFEVGVETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P+GIDW+CVSPKA + ++ ELKLV+PQ PE ++G + L PM P +
Sbjct: 120 LPAPEGIDWLCVSPKADAPVVLEACDELKLVYPQPLAMPERFLGIRASHYFLSPMASPSI 179
Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT A YC +P+WRL++Q HK IGI
Sbjct: 180 PETAVDEIKQSNTRRATDYCLAHPQWRLTLQMHKIIGI 217
>gi|188580423|ref|YP_001923868.1| radical SAM domain protein [Methylobacterium populi BJ001]
gi|179343921|gb|ACB79333.1| Radical SAM domain protein [Methylobacterium populi BJ001]
Length = 210
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 121/209 (57%), Positives = 142/209 (67%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+F TLQGEG AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDF+G+ G
Sbjct: 1 MSYAVKELFHTLQGEGAQAGRAAVFCRFAGCNLWSGREEDRAEAACRFCDTDFIGMDGEG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR++ + G K RY V TGGEPLLQ+D LI A++ RGFE+AVETNGT
Sbjct: 61 GGRFSDAEALAEAIAATWGGGKANRYVVFTGGEPLLQLDEALIAAVHARGFEVAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDWICVSPKAG L G ELKLVFPQ PE + F LQPMDGP
Sbjct: 121 LPAPPGIDWICVSPKAGNPLAQTSGDELKLVFPQAEALPERFADLPFRHHFLQPMDGPEA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT A++YC + +WRLS+QTHK IGI
Sbjct: 181 AANTAAAVAYCRSDARWRLSLQTHKIIGI 209
>gi|114798300|ref|YP_759262.1| hypothetical protein HNE_0532 [Hyphomonas neptunium ATCC 15444]
gi|114738474|gb|ABI76599.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
Length = 215
Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats.
Identities = 119/213 (55%), Positives = 136/213 (63%), Gaps = 5/213 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE F TLQGEG H GR AVF RF+GCNLWSG E+DR A CRFCDTDFVG G
Sbjct: 1 MTYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
GG++ LA IE W G Y V TGGEPL+Q+D PLI AL++ GFEIA+ET
Sbjct: 61 GGKFREPGLLAAHIESIWQANASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQPM 176
NGT+ P IDWICVSPKA L K G ELKLV+PQ PE + DFE F LQP
Sbjct: 121 NGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPEAQPECFETLDFEHFFLQPR 180
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
D + +YC +NPKWRLS+QTHK G
Sbjct: 181 DDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTG 213
>gi|260752296|ref|YP_003225189.1| hypothetical protein Za10_0051 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258551659|gb|ACV74605.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 217
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 111/213 (52%), Positives = 143/213 (67%), Gaps = 5/213 (2%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G GG
Sbjct: 5 YAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGENGG 64
Query: 64 RYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
R+ ++LA+ W + + VLTGGEPLLQVD L+ AL + FEIA+ET
Sbjct: 65 RFTAEELAEQAIRLWKEAIESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAIET 124
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPMD
Sbjct: 125 NGTQPAPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPMDD 184
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ +EN AI++ Q P WRLS+Q+HK IG++
Sbjct: 185 EYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217
>gi|56552191|ref|YP_163030.1| organic radical activating-like protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56543765|gb|AAV89919.1| organic radical activating-like protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 217
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 111/213 (52%), Positives = 143/213 (67%), Gaps = 5/213 (2%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y++KE FLTLQGEG AGR AVF RF+GCNLW+GRE DR A CRFCDTDFVGI G GG
Sbjct: 5 YAVKESFLTLQGEGIQAGRRAVFIRFAGCNLWNGREDDREQATCRFCDTDFVGIDGENGG 64
Query: 64 RYNVDQLADLIEEQWITG-----EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
R+ ++LA+ W + + VLTGGEPLLQVD L+ AL + FEIA+ET
Sbjct: 65 RFTAEELAEQAIRLWKEAIESRYQSVRPFVVLTGGEPLLQVDEALLLALKNQAFEIAIET 124
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT P IDW+C+SPKAG + ++ G E+KLV+PQ + E DF+ + +QPMD
Sbjct: 125 NGTQPVPSAIDWVCMSPKAGSQIILEKGNEIKLVWPQKGIDIEALEKLDFDHYLIQPMDD 184
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ +EN AI++ Q P WRLS+Q+HK IG++
Sbjct: 185 EYQKENIQKAIAFVMQRPLWRLSIQSHKLIGVK 217
>gi|152968324|ref|YP_001364108.1| hypothetical protein Krad_4381 [Kineococcus radiotolerans SRS30216]
gi|151362841|gb|ABS05844.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216]
Length = 237
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 118/236 (50%), Positives = 144/236 (61%), Gaps = 27/236 (11%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG HAGR AVFCRFS CNLW+GRE+DR A C FCDTDFVG G
Sbjct: 1 MTYLLKEIFYTLQGEGTHAGRPAVFCRFSRCNLWTGREKDRARAICTFCDTDFVGTDGVG 60
Query: 62 GGRY---------------------NVDQLADLIEEQWITGEKEGRY------CVLTGGE 94
GGR+ + + + E + + V TGGE
Sbjct: 61 GGRFATADDLAAAVDASWPAAGLTDDFTDGSAITAESDSSAHSHAPHGAQRKFVVCTGGE 120
Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
PLLQ+D +QAL++RGFE+AVETNGT PP GIDW+CVSPK G DL + G ELKLV+P
Sbjct: 121 PLLQLDDAAVQALHQRGFEVAVETNGTRTPPPGIDWLCVSPKIGADLVVSRGDELKLVYP 180
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q P + DF F LQPMDGP ++ +T AI YC +P+W LS+QTHK++GI
Sbjct: 181 QAGGDPAQFAELDFTSFRLQPMDGPDVQAHTRAAIDYCLTHPQWSLSMQTHKYLGI 236
>gi|88800853|ref|ZP_01116408.1| Organic radical activating enzyme [Reinekea sp. MED297]
gi|88776426|gb|EAR07646.1| Organic radical activating enzyme [Reinekea sp. MED297]
Length = 217
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 104/217 (47%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KE+F TLQGEG H GR AVFCRFSGCNLW+GRE+DR ++ CRFCDTDFVG G
Sbjct: 1 MTYSVKEMFYTLQGEGFHTGRPAVFCRFSGCNLWNGREKDRATSICRFCDTDFVGTDGQN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ +LA I + W + R+ V TGGEP LQ+D LI AL+ GFE AVE+NG
Sbjct: 61 GGKFREARELAQRIADFWPADQA-HRFVVFTGGEPALQLDETLIAALHDVGFECAVESNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P +DW+C+SPK ++ I+ ELKLVFPQ + PE + + L P++
Sbjct: 120 TLPLPPSLDWVCISPKGSAEVVIEACDELKLVFPQADAQPERFSHIHAQHRFLSPLNDWT 179
Query: 181 LEE-------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ NT + YC ++P+WRL++QTHK + I
Sbjct: 180 QAQLSPAQNNNTQACVQYCLEHPQWRLTLQTHKVLNI 216
>gi|145589599|ref|YP_001156196.1| radical SAM domain-containing protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145048005|gb|ABP34632.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 217
Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats.
Identities = 119/217 (54%), Positives = 154/217 (70%), Gaps = 8/217 (3%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y++KEIF TLQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG G G
Sbjct: 1 MYTVKEIFPTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRATAICQFCDTDFVGSDGLGG 60
Query: 63 GRY-NVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
G++ + LA+ IE W + + RY V TGGEPLLQ+D LI+ L+K+GFE+A+ETN
Sbjct: 61 GKFETANDLANAIELAWKSTSAGPQQRYVVFTGGEPLLQLDEVLIEVLHKKGFEVAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----VNVSPENYIGFDFERFSLQ 174
GT++ P+G+DW+CVSPKAG +L + E+KLV PQ + + D+ LQ
Sbjct: 121 GTLKVPKGVDWVCVSPKAGAELIVLQANEMKLVVPQNGHESLEQLMGRFEKMDYRNRFLQ 180
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
PMDGP L+ NT LA+ C + P WRLS+Q+HK IGIR
Sbjct: 181 PMDGPNLKSNTELAVGLCQKRPLWRLSIQSHKLIGIR 217
>gi|332188914|ref|ZP_08390617.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17]
gi|332011054|gb|EGI53156.1| hypothetical protein SUS17_4029 [Sphingomonas sp. S17]
Length = 210
Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats.
Identities = 112/210 (53%), Positives = 143/210 (68%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+FLTLQGEG AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG+ G
Sbjct: 1 MSYAVKEMFLTLQGEGVQAGRRAVFVRFAGCNLWSGREQDRASAICRFCDTDFVGVDGLG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ E + E+ R+ VLTGGEP+LQVD L+ AL+ GF IA+E+NGT
Sbjct: 61 GGRFADAGALVAAVEGFWGPERAERFVVLTGGEPMLQVDDALVDALHDAGFFIAIESNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I +DW+C+SPKAG ++ + GQELKLV+PQ + P G+DF LQP+D P
Sbjct: 121 IAAHPRLDWVCISPKAGSEVVQRSGQELKLVWPQAGIDPAEVEGWDFANHLLQPLDDPRA 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E N I+ + P+WRL++QTHK +G+R
Sbjct: 181 EANREACIAMVMERPRWRLTLQTHKMLGLR 210
>gi|326330124|ref|ZP_08196435.1| GntS [Nocardioidaceae bacterium Broad-1]
gi|325951937|gb|EGD43966.1| GntS [Nocardioidaceae bacterium Broad-1]
Length = 211
Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats.
Identities = 115/210 (54%), Positives = 139/210 (66%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG HAGR AVFCRF+ CNLW+GRE+DR A C+FCDT FVG G
Sbjct: 1 MTYKVKEIFYTLQGEGTHAGRPAVFCRFTSCNLWTGREKDRDRAICKFCDTAFVGTDGEG 60
Query: 62 GGRYNVDQLADLIE-EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ +W G V TGGEPLLQ+D + A+ GF +AVETNG
Sbjct: 61 GGKFADAAALAAAVASKWPMGTDGQPMVVCTGGEPLLQLDDAAVAAMKAAGFYVAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
TI PP GIDW+CVSPK G DL ++ GQELK V PQ +V P + DFE F +QPMDGP
Sbjct: 121 TILPPAGIDWLCVSPKIGSDLVVESGQELKFVVPQADVDPTTFEALDFESFRVQPMDGPD 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
L NT A+ +C ++P+W LS QTHKF+GI
Sbjct: 181 LAANTEYAVKFCLEHPRWHLSTQTHKFLGI 210
>gi|83309346|ref|YP_419610.1| organic radical activating protein [Magnetospirillum magneticum
AMB-1]
gi|82944187|dbj|BAE49051.1| Organic radical activating enzyme [Magnetospirillum magneticum
AMB-1]
Length = 202
Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats.
Identities = 115/209 (55%), Positives = 143/209 (68%), Gaps = 8/209 (3%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y+++EIF +LQGEG AGR AVF RF+GCNLWSGRE DR +A CRFCDTDFVG
Sbjct: 1 MSYTVREIFHSLQGEGVQAGRPAVFLRFAGCNLWSGREADRETATCRFCDTDFVG----- 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G +Y Q + E RY V+TGGEP LQ+D L++AL+ GFE+A+ETNGT
Sbjct: 56 GEKYPDAQG---LAEAVKAVGGATRYVVVTGGEPGLQLDGALVEALHGLGFEVAIETNGT 112
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+E P G+DW+CVSPKAG LK+ G ELKLVFPQ P ++ DF F LQPMDGP
Sbjct: 113 VELPSGLDWVCVSPKAGTTLKVTRGDELKLVFPQAGAMPGDFEHLDFAYFLLQPMDGPER 172
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +T AI +C +P+WRLS+QTHK +GI
Sbjct: 173 DAHTRAAIGHCLTHPRWRLSLQTHKIVGI 201
>gi|329851462|ref|ZP_08266219.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19]
gi|328840308|gb|EGF89880.1| hypothetical protein ABI_43030 [Asticcacaulis biprosthecum C19]
Length = 210
Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats.
Identities = 120/210 (57%), Positives = 144/210 (68%), Gaps = 1/210 (0%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+YS KEIFLTLQGEGG AGRV VF RF+GCNLWSGREQDR +A C FCDTDFVG G G
Sbjct: 1 MYSFKEIFLTLQGEGGQAGRVNVFARFAGCNLWSGREQDRATAACDFCDTDFVGTDGENG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GR+ + ++ W G G+ V TGGEPLLQ+D LI A+ G+ IAVETNGT
Sbjct: 61 GRFPTPADVVAALDAVWGEGRAAGKAVVFTGGEPLLQLDSDLIAAVKAAGYFIAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
++ P GIDW+CVSPK L GQELKLV+PQ NV P +++ FERF LQP D P
Sbjct: 121 LKAPAGIDWVCVSPKGQNRLHQTSGQELKLVWPQENVDPSDFLEMQFERFYLQPKDNPRQ 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT I YC +P+WR+SVQTHK +G++
Sbjct: 181 AANTQAVIDYCLLHPQWRMSVQTHKLVGLK 210
>gi|307545033|ref|YP_003897512.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581]
gi|307217057|emb|CBV42327.1| hypothetical protein HELO_2443 [Halomonas elongata DSM 2581]
Length = 214
Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats.
Identities = 116/213 (54%), Positives = 140/213 (65%), Gaps = 5/213 (2%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+YS+KE F +LQGEGG AGR +VFCRF+GCNLWSGRE DR+SA CRFCDTDF G G G
Sbjct: 1 MYSVKEAFYSLQGEGGQAGRASVFCRFAGCNLWSGREADRVSAACRFCDTDFRGTDGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GR+ + + LA+ + W R + TGGEPLLQ+D LI A++ R F++AVETNG
Sbjct: 61 GRFADAETLAEHLVGLWEGAPDGSRPQVIFTGGEPLLQLDDALIAAMHDREFDVAVETNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P GIDW+CVSPK L G ELKLV PQ PE + G DF F LQPMD
Sbjct: 121 TLAAPAGIDWLCVSPKGDVPLVQTRGDELKLVHPQPEAPPERFTGLDFRHFFLQPMDTSP 180
Query: 181 LEE---NTNLAISYCFQNPKWRLSVQTHKFIGI 210
L E ++YC NP+WRLS+QTHK GI
Sbjct: 181 LGETRDTMAATVAYCLANPRWRLSLQTHKIAGI 213
>gi|149377359|ref|ZP_01895104.1| Organic radical activating enzyme [Marinobacter algicola DG893]
gi|149358371|gb|EDM46848.1| Organic radical activating enzyme [Marinobacter algicola DG893]
Length = 218
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 108/218 (49%), Positives = 134/218 (61%), Gaps = 11/218 (5%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y +KE F TLQGEG AGR AVFCRFS CNLW+GRE+DR +A C FCDTDFVG G G
Sbjct: 1 MYRVKEAFYTLQGEGAQAGRAAVFCRFSKCNLWTGREKDRANAVCSFCDTDFVGTDGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ D LA I W Y V TGGEPLLQ+D L+ A ++ GFE+ VETNGT
Sbjct: 61 GQFETADALAAHIRRLWPDA-PGRPYVVCTGGEPLLQLDDQLVDAFHRAGFEVGVETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P GIDW+CVSPKA + ++ ELK+V+PQ PE + + L PM P +
Sbjct: 120 LPAPSGIDWLCVSPKADAPVVLRQCDELKVVYPQPLAMPERFTDIQASHYFLSPMASPTV 179
Query: 182 EE---------NTNLAISYCFQNPKWRLSVQTHKFIGI 210
E NT A YC +P+WRL++Q HK IGI
Sbjct: 180 SEGEPDPIKQSNTRKATDYCLTHPRWRLTLQMHKIIGI 217
>gi|294013047|ref|YP_003546507.1| putative organic radical activating enzyme [Sphingobium japonicum
UT26S]
gi|292676377|dbj|BAI97895.1| putative organic radical activating enzyme [Sphingobium japonicum
UT26S]
Length = 215
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 109/215 (50%), Positives = 145/215 (67%), Gaps = 5/215 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+FLTLQGEG HAGR AVF RF+GCNLW+GREQDR SA CRFCDTDFVG G
Sbjct: 1 MSYAVKEMFLTLQGEGVHAGRRAVFLRFAGCNLWTGREQDRASAVCRFCDTDFVGTDGDG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ ++GRY VLTGGEP+LQVD L+ AL+ RGF IA+E+NGT
Sbjct: 61 GGRFADADGLADAALALWGEGRDGRYIVLTGGEPMLQVDDALVDALHARGFAIAIESNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPM 176
+ G+DW+C+SPKAG ++ + G ELKLV+PQ E+ G+ F+ + +QP+
Sbjct: 121 LPAHPGLDWVCISPKAGSEVVQRSGNELKLVWPQPGQGHSLADVEDMEGWAFDHWLVQPL 180
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D P +N A+ + P+WRLS+Q+HK++G+R
Sbjct: 181 DDPKAADNARAAVELVMERPRWRLSLQSHKYLGLR 215
>gi|241766442|ref|ZP_04764315.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
gi|241363364|gb|EER58879.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
Length = 211
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 115/211 (54%), Positives = 134/211 (63%), Gaps = 1/211 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG AG AVFCRF+GCNLW+GREQDR A C+FCDTDFVG GT
Sbjct: 1 MTYSVKEIFYTLQGEGGQAGTPAVFCRFAGCNLWTGREQDRAQAICQFCDTDFVGTDGTL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ R VLTGGEPLLQVD LI AL+ + F IAVE+NGT
Sbjct: 61 GGKFETAAALAQSIAAQWPAGAGHRLVVLTGGEPLLQVDSELIAALHAQQFRIAVESNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDFERFSLQPMDGPF 180
+ P+GIDW+C+SPKAG + GQELKLV+PQ F LQPMDGP
Sbjct: 121 VAAPEGIDWLCISPKAGAPFVQRSGQELKLVWPQPGFDLGALERETHFTHRFLQPMDGPL 180
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT I+ C +P WRLS+QTHK GIR
Sbjct: 181 QRQNTAACIAACLAHPAWRLSLQTHKLTGIR 211
>gi|317486302|ref|ZP_07945134.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316922472|gb|EFV43726.1| radical SAM domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 218
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 109/215 (50%), Positives = 135/215 (62%), Gaps = 7/215 (3%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG AGR AVFCRFSGCNLWSGR +DR +A+CRFCDTDFVG
Sbjct: 6 MAYRVKEIFYTLQGEGAQAGRPAVFCRFSGCNLWSGRPEDRATAKCRFCDTDFVGADA-- 63
Query: 62 GGRYNVDQLADLIEEQWITGEKEG-----RYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
G ++LA I + + Y V TGGEP LQ+ LI L+ GFE+ V
Sbjct: 64 GVFATAEELAQTIAATFPVLAPQAYGGRKPYIVFTGGEPALQLTRELIDRLHALGFELGV 123
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
E+NGT+ P+G+DWI VSPK L G ELKLV+PQ SPE++ DF F LQP
Sbjct: 124 ESNGTLPLPEGLDWITVSPKGSNPLATTSGHELKLVWPQQGCSPEDFEDLDFRHFLLQPC 183
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D P + NT I+YC +P+W L +QTHK++G+R
Sbjct: 184 DDPRNKANTRECIAYCLLHPRWSLGLQTHKWVGVR 218
>gi|87122356|ref|ZP_01078237.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121]
gi|86162331|gb|EAQ63615.1| hypothetical protein MED121_00365 [Marinomonas sp. MED121]
Length = 216
Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats.
Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 7/215 (3%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+YSIKE F +LQGEG AGR ++FCRFSGCNLW+G+E R + C+FCDTDF+G+ G G
Sbjct: 1 MYSIKEAFYSLQGEGAQAGRPSIFCRFSGCNLWNGKETHRFDSLCQFCDTDFIGVDGQNG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
G++ + L + ++ +Y V TGGEP LQ+D LI A+ + G+ I +ETNGT
Sbjct: 61 GKFKQAKTLALHLDALWPNDQSDKYVVFTGGEPALQLDAALILAMKEMGYVIGIETNGTK 120
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P GIDWICVSPK +L I+ G ELKLV+PQ +++P Y DF+ F LQPMD L
Sbjct: 121 PLPDGIDWICVSPKTADELVIQQGHELKLVYPQSHLNPNKYTHLDFDTFYLQPMDQSHLP 180
Query: 183 EN-------TNLAISYCFQNPKWRLSVQTHKFIGI 210
++ ++YC NPKWRLS+QTHK + I
Sbjct: 181 KDRISPESTLKQTLNYCLANPKWRLSLQTHKILEI 215
>gi|92114161|ref|YP_574089.1| hypothetical protein Csal_2039 [Chromohalobacter salexigens DSM
3043]
gi|91797251|gb|ABE59390.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
3043]
Length = 215
Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats.
Identities = 116/215 (53%), Positives = 143/215 (66%), Gaps = 8/215 (3%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+YS+KE F TLQGEG AGR +VFCRF+GCNLWSGRE+DR ++CRFCDTDFVG G G
Sbjct: 1 MYSVKEAFYTLQGEGARAGRASVFCRFTGCNLWSGRERDRAQSRCRFCDTDFVGTDGQNG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
GR+ + LA + W + Y V TGGEPLLQ+D LI A+ GFE+AVETN
Sbjct: 61 GRFADAHALATHLHRLWPGTDDTAATPYVVFTGGEPLLQLDTALITAMRAHGFEVAVETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-- 177
GT+ PP GIDW+CVSPK L+I G ELKLV+PQ + P N+ DF F LQPMD
Sbjct: 121 GTLTPPDGIDWLCVSPKGDAPLRITQGDELKLVYPQDDAPPANFTHLDFAHFFLQPMDLA 180
Query: 178 --GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
G T+ ++YC +P+WRL++QTHK GI
Sbjct: 181 PRGGQGTTMTD-TVAYCLDHPQWRLALQTHKIAGI 214
>gi|78485139|ref|YP_391064.1| hypothetical protein Tcr_0794 [Thiomicrospira crunogena XCL-2]
gi|78363425|gb|ABB41390.1| conserved hypothetical protein [Thiomicrospira crunogena XCL-2]
Length = 218
Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats.
Identities = 109/215 (50%), Positives = 142/215 (66%), Gaps = 8/215 (3%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y IKE F +LQGEG H+GR A+FCRF+ CNLW+GRE DR +A C+FCDTDF+G G GG
Sbjct: 3 YRIKEAFYSLQGEGFHSGRPAIFCRFTNCNLWTGREADRSNAVCQFCDTDFLGTDGQNGG 62
Query: 64 RY-NVDQLADLIEEQWITGEK----EGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
+ + D LA + W T + + VLTGGEPLLQVD LI ++ GFEIAVET
Sbjct: 63 SFKDADSLAKHLLALWPTDKNDQACPHPFVVLTGGEPLLQVDQTLIDVFHQHGFEIAVET 122
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT + P+ IDWICVSPKA L + G ELKLV+PQ + P+ +F+ F LQ MD
Sbjct: 123 NGTQKAPKNIDWICVSPKANAPLILDSGDELKLVYPQTELRPKQVETLNFKHFYLQAMDD 182
Query: 179 PF---LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E+N ++YC ++P+W+LS+QTHK +G+
Sbjct: 183 ADPDIQEKNLKETLAYCLKHPQWKLSLQTHKILGV 217
>gi|152996126|ref|YP_001340961.1| hypothetical protein Mmwyl1_2104 [Marinomonas sp. MWYL1]
gi|150837050|gb|ABR71026.1| conserved hypothetical protein [Marinomonas sp. MWYL1]
Length = 216
Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 108/216 (50%), Positives = 139/216 (64%), Gaps = 9/216 (4%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+YSIKE F +LQGEG HAGR A+FCRF+GCNLWSG E+ R +++C+FCDTDF+G G G
Sbjct: 1 MYSIKEAFYSLQGEGAHAGRPALFCRFTGCNLWSGSEKTRATSECQFCDTDFIGTNGQHG 60
Query: 63 GRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G++ QL ++ W G+ +Y V TGGEP LQ+D +I + G+ IA+ETNGT
Sbjct: 61 GKFKTAGQLRTHLDALWPVGQ-GHKYVVFTGGEPALQLDNAIISEMKLYGYTIAIETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I P GIDWICVSPK L + G ELKLV+PQ ++SPE + DF F LQPMD L
Sbjct: 120 IALPDGIDWICVSPKTNKPLVVNKGDELKLVYPQSHLSPELFEALDFTNFYLQPMDQSHL 179
Query: 182 EEN-------TNLAISYCFQNPKWRLSVQTHKFIGI 210
+ YC +P+WRLS+QTHK + I
Sbjct: 180 TAEQIPLLDTQQATLHYCLSHPRWRLSLQTHKMLNI 215
>gi|170744629|ref|YP_001773284.1| radical SAM domain-containing protein [Methylobacterium sp. 4-46]
gi|168198903|gb|ACA20850.1| Radical SAM domain protein [Methylobacterium sp. 4-46]
Length = 210
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 116/209 (55%), Positives = 141/209 (67%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG AGR AVFCRF+GCNLWSGRE DR A C FCDTDFVG G
Sbjct: 1 MSYAVKEIFHTLQGEGAQAGRAAVFCRFAGCNLWSGREADRAEAVCHFCDTDFVGTDGAG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ + G + V TGGEPLLQ+D L+ A+ RGF AVETNGT
Sbjct: 61 GGRFPDAEALAAAIAAAWEGGPRNHFVVFTGGEPLLQLDAALLAAVRARGFAAAVETNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
E P+G+DWICVSPKAG L++ G ELKLV+PQ ++PE+ G DF F LQPMDGP
Sbjct: 121 QEAPEGLDWICVSPKAGAPLRLTRGDELKLVYPQAGLAPEDVAGLDFRHFFLQPMDGPDR 180
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ A+++C ++ +WRLS+QTHK IGI
Sbjct: 181 AAHLAAAVAHCRRDARWRLSLQTHKLIGI 209
>gi|226940051|ref|YP_002795124.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9]
gi|226714977|gb|ACO74115.1| Organic radical activating enzyme [Laribacter hongkongensis HLHK9]
Length = 209
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 117/210 (55%), Positives = 137/210 (65%), Gaps = 1/210 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG H+GR AVFCRF+GCNLWSGRE DR A C+FCDTDFVG
Sbjct: 1 MTYTVKEIFHTLQGEGVHSGRAAVFCRFTGCNLWSGRETDRAQATCQFCDTDFVGTGPDG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G +LA I + W G Y V TGGEPLLQ+D LI+A++ RGFE+ VETNGT
Sbjct: 61 GKFACARELAGRIADSW-AGTGGTPYVVFTGGEPLLQLDEELIEAMHARGFEVGVETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I P GIDW+CVSPKAG K G ELKLV+PQ + PE F R+ LQPMDGP
Sbjct: 120 IPAPPGIDWLCVSPKAGSGWVQKQGDELKLVYPQPGLLPETVELTGFSRYWLQPMDGPEQ 179
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ AI +C +P W LS+Q HK GIR
Sbjct: 180 TMHIKAAIGFCLLHPDWHLSLQNHKLAGIR 209
>gi|315499628|ref|YP_004088431.1| radical sam domain protein [Asticcacaulis excentricus CB 48]
gi|315417640|gb|ADU14280.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48]
Length = 216
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 116/216 (53%), Positives = 141/216 (65%), Gaps = 6/216 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+YS KEIFLTLQGEGG AGRVAVF RF+GCNLWSGREQDR +A C FCDTDFVG G
Sbjct: 1 MVYSFKEIFLTLQGEGGQAGRVAVFARFAGCNLWSGREQDRATAACTFCDTDFVGTDGEG 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + ++ W + + V TGGEPLLQ+D PLI A+ G+ IAVE+NG
Sbjct: 61 GGKFDTPEAAVAALDAHWGQIDPAHKSVVFTGGEPLLQLDAPLIAAVKSAGYFIAVESNG 120
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T+ P GIDW+C+SPK L GQELKLV+PQ V P + DFERF LQP D
Sbjct: 121 TLRAPIGIDWLCISPKGENRLHQTSGQELKLVWPQDRVDPAEFARMDFERFYLQPKDPLD 180
Query: 181 -----LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+T I YC +P+WR+SVQTHK +G+R
Sbjct: 181 QNPAMRAAHTQAVIDYCLAHPQWRMSVQTHKVVGVR 216
>gi|149926775|ref|ZP_01915035.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105]
gi|149824704|gb|EDM83920.1| hypothetical protein LMED105_08825 [Limnobacter sp. MED105]
Length = 216
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 5/214 (2%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y++KE+F TLQGEG AGR AVFCRF+GCNLW+GRE+DR +A C+FCDTDFVG G
Sbjct: 1 MATYTVKEMFYTLQGEGAQAGRAAVFCRFAGCNLWTGREEDRATAVCKFCDTDFVGTDGV 60
Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
GG++ + LA I + + G + Y V TGGEP LQ+D LI A++ +GFEIA+ET
Sbjct: 61 GGGKFKDAVALAQAIADTYQGGLGTAKPYVVFTGGEPTLQLDSALIDAVHAQGFEIAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT+ P+G+DWICVSPK G +L G ELK+V PQ+ F+ + +Q MD
Sbjct: 121 NGTLPVPEGVDWICVSPKFGSELVQTRGHELKVVVPQLGQDLNALGQLQFDHYFVQAMDD 180
Query: 179 PF---LEENTNLAISYCFQNPKWRLSVQTHKFIG 209
+N AI C P+WRLSVQTHK IG
Sbjct: 181 TDPAKKAKNMQAAIQTCLNKPQWRLSVQTHKVIG 214
>gi|218886225|ref|YP_002435546.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757179|gb|ACL08078.1| radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 224
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 107/222 (48%), Positives = 133/222 (59%), Gaps = 14/222 (6%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y +KEIF +LQGEG HAGR AVFCRFSGCNLW+GREQDR A CRFCDTDF G G GG
Sbjct: 3 YRVKEIFHSLQGEGVHAGRAAVFCRFSGCNLWTGREQDRPDAACRFCDTDFTGTDGPGGG 62
Query: 64 RYNVDQLADLIEEQW-------ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
+ Q + G Y V TGGEP LQ+ L+ AL+ G + V
Sbjct: 63 VFEDAQALAAAILAAFPYPLAPLDGGGWRPYVVFTGGEPALQLTPELLDALHAHGCQCGV 122
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
ETNGT+ P G+DW+ VSPKAG L + G ELKLV+PQ V P ++ G DF F LQP
Sbjct: 123 ETNGTLPLPAGLDWVTVSPKAGTRLAVTRGDELKLVWPQDGVDPADFAGLDFGHFILQPR 182
Query: 177 DG-------PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D ++ + +C ++P+WRL +QTHK++GIR
Sbjct: 183 DDAARGAGAQAGADHIAACVRHCLEHPRWRLGLQTHKYLGIR 224
>gi|120601647|ref|YP_966047.1| hypothetical protein Dvul_0597 [Desulfovibrio vulgaris DP4]
gi|120561876|gb|ABM27620.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
Length = 216
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 109/215 (50%), Positives = 135/215 (62%), Gaps = 6/215 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG AGR AVFCRFSGCNLW+GR QDR +A C FCDTDFVG G
Sbjct: 1 MTYRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGRAQDRPAAVCPFCDTDFVGTDGPG 60
Query: 62 GGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
GG + + TGE Y V TGGEP LQ+D PLI L+ G E+A+ET
Sbjct: 61 GGVFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT+ P+GIDW+ VSPKAG L + G ELKLV+PQ + PE+Y F +QP DG
Sbjct: 121 NGTVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDG 180
Query: 179 PFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + A+ +C +P+WRL +QTHK++GI
Sbjct: 181 LGDAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215
>gi|46581062|ref|YP_011870.1| hypothetical protein DVU2658 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450483|gb|AAS97130.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234739|gb|ADP87593.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
Length = 216
Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats.
Identities = 108/215 (50%), Positives = 134/215 (62%), Gaps = 6/215 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KEIF TLQGEG AGR AVFCRFSGCNLW+G QDR +A C FCDTDFVG G
Sbjct: 1 MTYRVKEIFHTLQGEGMRAGRAAVFCRFSGCNLWTGWAQDRPAAVCPFCDTDFVGTDGPG 60
Query: 62 GGRYNVDQLADLIEEQ---WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
GG + + TGE Y V TGGEP LQ+D PLI L+ G E+A+ET
Sbjct: 61 GGVFEDAATLAAAILAAFPYKTGEGYRPYVVFTGGEPALQLDRPLIDILHAHGCEVAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT+ P+GIDW+ VSPKAG L + G ELKLV+PQ + PE+Y F +QP DG
Sbjct: 121 NGTVRLPEGIDWVTVSPKAGTRLAVTSGDELKLVWPQQGICPESYESLAFTYLLMQPRDG 180
Query: 179 PFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + A+ +C +P+WRL +QTHK++GI
Sbjct: 181 LGDAGRGDAESEAVRWCLAHPRWRLCLQTHKYLGI 215
>gi|46200887|ref|ZP_00056296.2| COG0602: Organic radical activating enzymes [Magnetospirillum
magnetotacticum MS-1]
Length = 202
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 116/209 (55%), Positives = 142/209 (67%), Gaps = 8/209 (3%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y+++EIF +LQGEG AGR AVF RFSGCNLWSGR++DR A CRFCDTDFVG
Sbjct: 1 MSYTVREIFHSLQGEGVQAGRAAVFLRFSGCNLWSGRQEDRAKAVCRFCDTDFVG----- 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G +Y+ Q + E RY V+TGGEP LQ+D LI AL+ GF +AVETNGT
Sbjct: 56 GVKYSDAQS---LAEAVKAVGGSTRYVVVTGGEPGLQLDETLIHALHGLGFSVAVETNGT 112
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P G+DW+CVSPKAG +L + G ELKLVFPQ +PE + DF F LQPMDGP
Sbjct: 113 LGLPSGLDWVCVSPKAGTELMVTRGDELKLVFPQDGAAPEAFEHLDFAHFLLQPMDGPDR 172
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT AI++C +P+WRLS+QTHK +GI
Sbjct: 173 AANTAAAIAHCLTHPRWRLSLQTHKIVGI 201
>gi|121608068|ref|YP_995875.1| hypothetical protein Veis_1081 [Verminephrobacter eiseniae EF01-2]
gi|121552708|gb|ABM56857.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
Length = 222
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 120/212 (56%), Positives = 138/212 (65%), Gaps = 2/212 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
YS+KEIF TLQGEGG G AVFCRF+GCNLWSGRE DR A CRFCDTDFVG GT
Sbjct: 11 MTYSVKEIFYTLQGEGGQTGMPAVFCRFAGCNLWSGREADRADALCRFCDTDFVGTDGTL 70
Query: 62 GGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ D LA+ I QW + R VLTGGEPLLQVD L+ AL+ + F IAVETNG
Sbjct: 71 GGKFAQADALAERIAAQWPAADSAHRLVVLTGGEPLLQVDAALLAALHAQQFRIAVETNG 130
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-DFERFSLQPMDGP 179
++ P GIDW+CVSPKAG GQELKLV+PQ + F LQPMDGP
Sbjct: 131 SLAAPPGIDWLCVSPKAGAPWVQTQGQELKLVWPQAGMDLAAIARTGQFTHRFLQPMDGP 190
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ + I+ C Q P WRLS+QTHK GIR
Sbjct: 191 DQAAHIAICIAACLQQPLWRLSLQTHKISGIR 222
>gi|94987241|ref|YP_595174.1| hypothetical protein LI0799 [Lawsonia intracellularis PHE/MN1-00]
gi|94731490|emb|CAJ54853.1| conserved hypothetical protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 212
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 105/214 (49%), Positives = 135/214 (63%), Gaps = 6/214 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ IKE+F T+QGEG GR AVFCRFSGCNLWSG+E+DR A+C+FCDTDF+
Sbjct: 1 MSFYIKELFYTIQGEGVQTGRPAVFCRFSGCNLWSGKEKDRAIAKCQFCDTDFLNAD--F 58
Query: 62 GGRYNVDQLADLIEEQWITGEKEGR----YCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
G + +QL I + + Y V TGGEP LQ++ +I L+K EIA+E
Sbjct: 59 GILDSEEQLVANILQTFPQNNYTHPSYKPYVVFTGGEPSLQLNQVIINLLHKYHIEIAIE 118
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
TNGTI P+ IDWI VSPK G +L G ELKLV+PQ N PE Y+ +F+ F LQP D
Sbjct: 119 TNGTIPLPKHIDWITVSPKEGNELVTTVGNELKLVWPQQNCDPEKYLTLEFDNFILQPKD 178
Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L N + I YC ++P W+L +Q+HK+IGIR
Sbjct: 179 DKNLSNNIQICIEYCMKHPYWKLGLQSHKWIGIR 212
>gi|94495452|ref|ZP_01302032.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58]
gi|94424840|gb|EAT09861.1| hypothetical protein SKA58_05370 [Sphingomonas sp. SKA58]
Length = 215
Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats.
Identities = 111/215 (51%), Positives = 138/215 (64%), Gaps = 5/215 (2%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KE+FLTLQGEG AGR AVF RF+GCNLWSGREQDR SA CRFCDTDFVG G
Sbjct: 1 MSYAVKEMFLTLQGEGVQAGRRAVFLRFAGCNLWSGREQDRASAVCRFCDTDFVGTDGLG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GG++ + EGRY VLTGGEP+LQVD L+ AL+ RGF IA+E+NGT
Sbjct: 61 GGKFADAEALADAALGLWGEGAEGRYIVLTGGEPMLQVDDALVDALHDRGFTIAIESNGT 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQPM 176
+ GIDWICVSPKAG D+ + G ELKLV+PQ + + F +QP+
Sbjct: 121 LAAHPGIDWICVSPKAGSDVVQRSGHELKLVWPQPGGGHSLADVDAMARWAFAHHLIQPL 180
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D +N AI+ P+WRL+VQ HK++G+R
Sbjct: 181 DDAHAPDNARAAIALVMDRPQWRLTVQAHKYLGLR 215
>gi|144898951|emb|CAM75815.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 210
Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats.
Identities = 109/213 (51%), Positives = 132/213 (61%), Gaps = 8/213 (3%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y +KE+F TLQGEGG AGR A+F RF+GCNLWSGRE DR +AQC FCDTDFVG
Sbjct: 1 MAYKVKELFYTLQGEGGQAGRAAIFLRFAGCNLWSGREADRATAQCPFCDTDFVGGDKYA 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+A W G V+TGGEP LQ+D LIQAL+ G EIAVETNGT
Sbjct: 61 DADALAGAVAA----LWPKGGGGQPLVVITGGEPGLQLDEALIQALHFWGLEIAVETNGT 116
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP-- 179
I P GIDW+CVSPKAG DL+ G E+KLV+PQ + P + F + LQP D P
Sbjct: 117 IALPPGIDWVCVSPKAGQDLETIAGDEIKLVWPQDGIDPTRFEKMPFRHYFLQPKDVPGD 176
Query: 180 --FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++YC +P+WRLS+QTHK +GI
Sbjct: 177 SAAQAAHLQACVAYCLTHPRWRLSLQTHKILGI 209
>gi|94500711|ref|ZP_01307241.1| Organic radical activating enzyme [Oceanobacter sp. RED65]
gi|94427266|gb|EAT12246.1| Organic radical activating enzyme [Oceanobacter sp. RED65]
Length = 223
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 130/217 (59%), Gaps = 10/217 (4%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+++KE F TLQGEG AGR +VF RFS CNLW+G+E R +A C+FCDTD VG G GG
Sbjct: 6 FNVKEAFYTLQGEGARAGRASVFIRFSKCNLWNGKESGRGAAVCQFCDTDIVGTDGQNGG 65
Query: 64 RYNVDQLADLIEEQWIT---GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
YN L +L W K Y V TGGEP LQ+ L+ + GFE AVE+NG
Sbjct: 66 TYNQQALVELALSLWPQLTDDTKSKPYVVFTGGEPALQLTESLVSDFQQAGFECAVESNG 125
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM---- 176
T+ P +DW+C+SPK ++ +K ELKLV+PQV++SP+ G F L PM
Sbjct: 126 TLPLPTNLDWVCISPKGTSEIVVKQCDELKLVYPQVDLSPDAVSGISASYFYLSPMADYG 185
Query: 177 ---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
G + EN A YC +P+WR+S+QTHK +GI
Sbjct: 186 EQNSGMIIRENMQAATQYCLDHPQWRMSLQTHKLLGI 222
>gi|121997906|ref|YP_001002693.1| radical SAM domain-containing protein [Halorhodospira halophila
SL1]
gi|121589311|gb|ABM61891.1| Radical SAM domain protein [Halorhodospira halophila SL1]
Length = 209
Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 109/209 (52%), Positives = 133/209 (63%), Gaps = 1/209 (0%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++ +F TLQGEG +GR AVF RF+GCNLWSGRE DR +A C FCDTDFVG G
Sbjct: 1 MSYAVHSLFYTLQGEGARSGRPAVFLRFAGCNLWSGREADRATAVCTFCDTDFVGTGGPG 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
GGR+ W G E Y V TGGEP LQ+D L+ AL+ RGFE+AVETNGT
Sbjct: 61 GGRFADAPELAAAVAAWWPGGGE-PYVVCTGGEPALQLDAALVAALHARGFEVAVETNGT 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
+ P G+DWICVSPKAG +L I G ELKL++PQ P+ + F RF LQP+D
Sbjct: 120 LPLPAGVDWICVSPKAGTELAITAGDELKLIYPQPGAEPQRFTHLAFRRFYLQPLDDNQR 179
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+T + YC +P+W LSVQ HK +GI
Sbjct: 180 GAHTRAVLDYCRGHPQWWLSVQIHKDLGI 208
>gi|299148832|ref|ZP_07041894.1| GntS [Bacteroides sp. 3_1_23]
gi|298513593|gb|EFI37480.1| GntS [Bacteroides sp. 3_1_23]
Length = 183
Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats.
Identities = 81/211 (38%), Positives = 105/211 (49%), Gaps = 28/211 (13%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + I EIF +LQGEG H G A+F RFSGCNL C FCDT
Sbjct: 1 MMMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNLK-----------CDFCDTQH-----E 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+G D++ ++ + VLTGGEP L VD LI L++ G + +ETNG
Sbjct: 45 EGKMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWVDDELIDRLHQAGKYVTIETNG 98
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T P IDW+ SPK G L I E+K+V+ ++S + E F LQP
Sbjct: 99 TRPLPVAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC-- 154
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 155 --NNTASTVDCVMRHPKWRLSLQTHKLIDIR 183
>gi|160887244|ref|ZP_02068247.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483]
gi|315919753|ref|ZP_07915993.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156107655|gb|EDO09400.1| hypothetical protein BACOVA_05261 [Bacteroides ovatus ATCC 8483]
gi|313693628|gb|EFS30463.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 183
Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats.
Identities = 80/211 (37%), Positives = 106/211 (50%), Gaps = 28/211 (13%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + I EIF +LQGEG H G A+F RFSGCNL C FCDT
Sbjct: 1 MTMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNLK-----------CDFCDTQH-----E 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+G +++ ++ + VLTGGEP L +D LI L++ G + +ETNG
Sbjct: 45 EGTMMTDEEIITKVK------KYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNG 98
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T P IDW+ SPK G L I E+K+V+ ++S + E F LQP
Sbjct: 99 THPLPASIDWVTCSPKQGAKLAIDRMNEVKVVYEGQDISI--FELLPAEHFFLQPCSC-- 154
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L + ++PKWRLS+QTHK I IR
Sbjct: 155 --NNTALTVDCVMRHPKWRLSLQTHKLIDIR 183
>gi|298384120|ref|ZP_06993681.1| GntS [Bacteroides sp. 1_1_14]
gi|298263724|gb|EFI06587.1| GntS [Bacteroides sp. 1_1_14]
Length = 182
Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 81/210 (38%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT
Sbjct: 1 MMRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CSFCDTQH-----EA 44
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G D++ + + +LTGGEP L +D LI L+K G + +ETNGT
Sbjct: 45 GTLMTDDEIIAEV------SKYPAVTVILTGGEPSLWIDDALIDRLHKAGKYVCIETNGT 98
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
P+ IDW+ SPK G L I E+K+V+ ++S E F LQP
Sbjct: 99 RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISIYEL--LPAEHFFLQPCSC--- 153
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L + ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182
>gi|29349862|ref|NP_813365.1| hypothetical protein BT_4454 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29341773|gb|AAO79559.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 182
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 80/210 (38%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT
Sbjct: 1 MMRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CSFCDTQH-----EA 44
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G D++ + + +LTGGEP L +D LI L++ G + +ETNGT
Sbjct: 45 GTLMTDDEIIAEV------SKYPAVTVILTGGEPSLWIDDALIDRLHEAGKYVCIETNGT 98
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
P+ IDW+ SPK G L I E+K+V+ ++S E F LQP
Sbjct: 99 RPLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISIYEL--LPAEHFFLQPCSC--- 153
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L + ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTALTVDCVMRHPKWRLSLQTHKLIDIR 182
>gi|298376475|ref|ZP_06986430.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19]
gi|298266353|gb|EFI08011.1| hypothetical protein HMPREF0104_02657 [Bacteroides sp. 3_1_19]
Length = 181
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF ++QGEG G AVF RFSGCNL +C FCDT+ +G
Sbjct: 1 MKKINEIFYSIQGEGYFTGTPAVFVRFSGCNL-----------RCPFCDTEH-----KEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ D++ I + VLTGGEP +QV L+ + G + +ETNGT+
Sbjct: 45 KMLSDDEIIAEIRR------YPALHVVLTGGEPCMQVTYDLVDKIKATGRFVQIETNGTL 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
PP IDWI SPK G + ELK+V+ ++S + + + LQP G
Sbjct: 99 VPPVNIDWITCSPKEGGKTVVINPNELKVVYTGQDMSQYD--KYSAGVYYLQPCSG---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT I+Y + PKW+LS+QTHK + +R
Sbjct: 153 RNTKEVINYIKEYPKWKLSLQTHKILNVR 181
>gi|253569769|ref|ZP_04847178.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251840150|gb|EES68232.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 181
Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats.
Identities = 80/209 (38%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CSFCDTQH-----EAG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
D++ + + +LTGGEP L +D LI L++ G + +ETNGT
Sbjct: 45 TLMTDDEIIAEV------SKYPAVTVILTGGEPSLWIDDALIDRLHEAGKYVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ IDW+ SPK G L I E+K+V+ ++S E F LQP
Sbjct: 99 PLPESIDWVTCSPKQGVKLGITRMDEVKVVYEGQDISIYEL--LPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L + ++PKWRLS+QTHK I IR
Sbjct: 153 NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181
>gi|262408739|ref|ZP_06085285.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|293369177|ref|ZP_06615771.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
gi|294647054|ref|ZP_06724666.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
gi|294807238|ref|ZP_06766052.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
gi|298481567|ref|ZP_06999759.1| GntS [Bacteroides sp. D22]
gi|262353604|gb|EEZ02698.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292635760|gb|EFF54258.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
gi|292637600|gb|EFF56006.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
gi|294445536|gb|EFG14189.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
gi|295087026|emb|CBK68549.1| Organic radical activating enzymes [Bacteroides xylanisolvens XB1A]
gi|298272431|gb|EFI14000.1| GntS [Bacteroides sp. D22]
Length = 182
Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats.
Identities = 79/210 (37%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG H G A+F RFSGCNL C FCDT +
Sbjct: 1 MMRKINEIFYSLQGEGYHTGTPAIFVRFSGCNLK-----------CDFCDTQH-----EE 44
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G D++ ++ + VLTGGEP L +D LI L++ G + +ETNGT
Sbjct: 45 GKMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGT 98
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
P IDW+ SPK G L I E+K+V+ ++S + E F LQP
Sbjct: 99 RPLPAAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC--- 153
Query: 182 EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 154 -NNTASTVDCVMRHPKWRLSLQTHKLIDIR 182
>gi|237721523|ref|ZP_04552004.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449319|gb|EEO55110.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 181
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 79/209 (37%), Positives = 104/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G A+F RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNLK-----------CDFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
D++ ++ + VLTGGEP L +D LI L++ G + +ETNGT
Sbjct: 45 KMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHEAGKYVTIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L I E+K+V+ ++S + E F LQP
Sbjct: 99 PLPAAIDWVTCSPKQGGKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 153 NNTASTVDCVMRHPKWRLSLQTHKLIDIR 181
>gi|237715731|ref|ZP_04546212.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|229444440|gb|EEO50231.1| conserved hypothetical protein [Bacteroides sp. D1]
Length = 181
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 79/209 (37%), Positives = 104/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G A+F RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNLK-----------CDFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
D++ ++ + VLTGGEP L +D LI L++ G + +ETNGT
Sbjct: 45 KMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDDELIDRLHQAGKYVTIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L I E+K+V+ ++S + E F LQP
Sbjct: 99 PLPAAIDWVTCSPKQGVKLAIDRMDEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 153 NNTASTVDCVMRHPKWRLSLQTHKLIDIR 181
>gi|260171438|ref|ZP_05757850.1| hypothetical protein BacD2_06190 [Bacteroides sp. D2]
Length = 181
Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 79/209 (37%), Positives = 105/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G A+F RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAIFVRFSGCNLK-----------CDFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+++ ++ + VLTGGEP L +D LI L++ G + +ETNGT
Sbjct: 45 TMMTDEEIITKVK------KYPAVTVVLTGGEPSLWIDDQLIDLLHQAGKYVTIETNGTH 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L I E+K+V+ ++S + E F LQP
Sbjct: 99 PLPASIDWVTCSPKQGAKLAIDRMNEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT L + ++PKWRLS+QTHK I IR
Sbjct: 153 NNTALTVDCVMRHPKWRLSLQTHKLIDIR 181
>gi|53714880|ref|YP_100872.1| hypothetical protein BF3595 [Bacteroides fragilis YCH46]
gi|253565984|ref|ZP_04843438.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|52217745|dbj|BAD50338.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|251945088|gb|EES85526.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 181
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 77/208 (37%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CDFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + I G+ +LTGGEP L +D I L++ G + +ETNGT
Sbjct: 45 EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G +L + E+K+V+ N+ E F LQP
Sbjct: 99 PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDVYEQ--LPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180
>gi|189460362|ref|ZP_03009147.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136]
gi|189432914|gb|EDV01899.1| hypothetical protein BACCOP_00999 [Bacteroides coprocola DSM 17136]
Length = 181
Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 84/208 (40%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLK-----------CSFCDTQH-------- 41
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + ++I E + +LTGGEP L +D L +AL+ G IA+ETNGT
Sbjct: 42 EEFRMMTDDEIIAEVCT---YPCQMVILTGGEPGLSIDSQLTKALHAAGKYIAIETNGTC 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ IDW+ SPK G LK+ E+K+V+ +VSP Y+ + LQP G
Sbjct: 99 VLPEDIDWVTCSPKEGTTLKLHHIDEVKVVYVGQDVSP--YLKLPAKHHFLQPCSG---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+NTN I+Y ++P+WRLS+QTHK I I
Sbjct: 153 QNTNDVIAYIKEHPQWRLSLQTHKLIDI 180
>gi|60682861|ref|YP_213005.1| hypothetical protein BF3399 [Bacteroides fragilis NCTC 9343]
gi|60494295|emb|CAH09090.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
gi|301164330|emb|CBW23888.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 181
Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 77/208 (37%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CDFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + I G+ +LTGGEP L +D I L++ G + +ETNGT
Sbjct: 45 EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHRAGKYVCIETNGTK 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G +L + E+K+V+ N+ E F LQP
Sbjct: 99 PLPVAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDVYEQ--LPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180
>gi|265766736|ref|ZP_06094565.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263253113|gb|EEZ24589.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 181
Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats.
Identities = 77/208 (37%), Positives = 100/208 (48%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CDFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + I G+ +LTGGEP L +D I L+ G + +ETNGT
Sbjct: 45 EMMTDEDIVNEI------GKYPAVMVILTGGEPSLWIDDAFIDLLHHAGKYVCIETNGTK 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G +L + E+K+V+ N+ E F LQP
Sbjct: 99 PLPAAIDWVTCSPKQGVNLALNRMDEVKVVYEGQNIDVYEQ--LPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + ++PKWRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPKWRLSLQTHKLINI 180
>gi|153809323|ref|ZP_01961991.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185]
gi|149128093|gb|EDM19314.1| hypothetical protein BACCAC_03636 [Bacteroides caccae ATCC 43185]
Length = 181
Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats.
Identities = 79/209 (37%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG + G A+F RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYYTGTPAIFIRFSGCNLK-----------CSFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
D++ ++ + VLTGGEP L +D LI L++ G + VETNGT
Sbjct: 45 TMMTDDEIIAEVK------KYPAVTVVLTGGEPSLWIDATLIDRLHEAGKYVTVETNGTN 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ +DW+ SPK G +LKI E+K+V+ ++S + E F LQP
Sbjct: 99 PLPESVDWVTCSPKQGVELKINRIDEVKVVYEGQDISI--FELLPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 153 INTADTVDCVMRHPKWRLSLQTHKLIDIR 181
>gi|298376715|ref|ZP_06986670.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19]
gi|301310018|ref|ZP_07215957.1| GntS [Bacteroides sp. 20_3]
gi|298266593|gb|EFI08251.1| hypothetical protein HMPREF0104_02900 [Bacteroides sp. 3_1_19]
gi|300831592|gb|EFK62223.1| GntS [Bacteroides sp. 20_3]
Length = 181
Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+++ + + R +LTGGEP L +D LI L + G +I +ETNGT
Sbjct: 45 VMMTDEEIVEKV------SSFPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P GIDW+ SPK + ++ E+K+V+ ++S I LQP
Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLSAYAEI--PARYHFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT + Y ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181
>gi|255011037|ref|ZP_05283163.1| hypothetical protein Bfra3_17992 [Bacteroides fragilis 3_1_12]
gi|313148842|ref|ZP_07811035.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313137609|gb|EFR54969.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 181
Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats.
Identities = 74/208 (35%), Positives = 99/208 (47%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CDFCDTRH-----ETG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+++ + ++ + +LTGGEP L +D I L+ G + +ETNGT
Sbjct: 45 EMMTDEEIVNEVK------KYPAVMVILTGGEPSLWIDDAFIDLLHGAGKYVCIETNGTK 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L + E+K+V+ N+ E F LQP
Sbjct: 99 PLPAAIDWVTCSPKQGVKLALNRMDEVKVVYEGQNIDVYEQ--LPAEHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + ++P+WRLS+QTHK I I
Sbjct: 153 NNTAETVDCVMRHPRWRLSLQTHKLINI 180
>gi|255013373|ref|ZP_05285499.1| hypothetical protein B2_05655 [Bacteroides sp. 2_1_7]
gi|262381499|ref|ZP_06074637.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262296676|gb|EEY84606.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 181
Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCSFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+++ + + R +LTGGEP L +D LI L + G +I +ETNGT
Sbjct: 45 VMMTDEEIVEKV------SSFPARIVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P GIDW+ SPK + ++ E+K+V+ ++S Y LQP
Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERIDEIKVVYTGQDLSA--YAEIPARYHFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT + Y ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181
>gi|171463302|ref|YP_001797415.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192840|gb|ACB43801.1| Radical SAM domain protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 198
Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/198 (55%), Positives = 138/198 (69%), Gaps = 8/198 (4%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y++KE F LQGEG HAGR AVFCRF+GCNLWSGRE+DR +A C+FCDTDFVG G G
Sbjct: 1 MYTVKEPFPILQGEGAHAGRAAVFCRFAGCNLWSGREEDRGAAICQFCDTDFVGSDGLGG 60
Query: 63 GRY-NVDQLADLIEEQW--ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
G++ + LAD IE W + + RY V TGGEPLLQ+D LI AL+++GF +A+ETN
Sbjct: 61 GKFETANALADAIESSWRSTSAGPQQRYVVFTGGEPLLQLDDELIAALHQKGFAVAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-----ENYIGFDFERFSLQ 174
GTI+ P+GIDW+CVSPKAG +L + ELKLV PQ + S + D+ LQ
Sbjct: 121 GTIKIPKGIDWVCVSPKAGSELIVLQADELKLVVPQQDHSELEKIVARFEKMDYRNRFLQ 180
Query: 175 PMDGPFLEENTNLAISYC 192
PMDGP L+ NT LA+S C
Sbjct: 181 PMDGPGLKSNTELAVSLC 198
>gi|189467678|ref|ZP_03016463.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM
17393]
gi|189435942|gb|EDV04927.1| hypothetical protein BACINT_04069 [Bacteroides intestinalis DSM
17393]
Length = 181
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 80/209 (38%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CSFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ D++ + G+ +LTGGEP L VD I L++ G + +ETNGT
Sbjct: 45 VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWVDEAFIDRLHQAGKYVCIETNGTN 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L I E+K+V+ ++ E F LQP
Sbjct: 99 PLPPNIDWVTCSPKQGVKLGITRMDEVKVVYEGQDIGVYEL--LPAEYFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT ++ Q+PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIDIR 181
>gi|224538811|ref|ZP_03679350.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519568|gb|EEF88673.1| hypothetical protein BACCELL_03706 [Bacteroides cellulosilyticus
DSM 14838]
Length = 181
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 82/209 (39%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CSFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ D++ + G+ +LTGGEP L +D I L++ G + +ETNGT
Sbjct: 45 VLMSDDEIIAEV------GKYPAVTVILTGGEPSLWIDEVFIDRLHQAGKYVCIETNGTN 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
PQ IDW+ SPK G L I E+K+V+ ++ E Y E F LQP
Sbjct: 99 PLPQNIDWVTCSPKQGVKLGITRMDEVKVVYEGQDI--EVYELLPAEYFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT ++ Q+PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIDIR 181
>gi|256840895|ref|ZP_05546403.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738167|gb|EEU51493.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 181
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+++ + + R +LTGGEP L +D LI L + G +I +ETNGT
Sbjct: 45 VMMTDEEIVEKV------SSFPARMVILTGGEPSLWIDKALISRLREAGKQICIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P GIDW+ SPK + ++ E+K+V+ ++S I LQP
Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLSAYAEI--PARYHFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT + Y ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181
>gi|150007939|ref|YP_001302682.1| hypothetical protein BDI_1300 [Parabacteroides distasonis ATCC
8503]
gi|149936363|gb|ABR43060.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 181
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNL-----------RCGFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+++ + + R +LTGGEP L +D LI L + G ++ +ETNGT
Sbjct: 45 VMMTDEEIVEKV------SSFPARMVILTGGEPSLWIDKSLISRLREAGKQVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P GIDW+ SPK + ++ E+K+V+ ++S I LQP
Sbjct: 99 PLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLSAYAEI--PARYHFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT + Y ++P+WRLS+QTHK I I+
Sbjct: 153 QNTKEVVDYILRHPRWRLSLQTHKLIDIQ 181
>gi|218129819|ref|ZP_03458623.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697]
gi|317475833|ref|ZP_07935090.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
gi|217987929|gb|EEC54254.1| hypothetical protein BACEGG_01399 [Bacteroides eggerthii DSM 20697]
gi|316907993|gb|EFV29690.1| radical SAM superfamily protein [Bacteroides eggerthii 1_2_48FAA]
Length = 181
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 102/209 (48%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNLK-----------CSFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ D + GE +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 VLMSDEEILDAV------GEYPATTVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G I E+K+V+ +++ F LQP
Sbjct: 99 ALPDNIDWVTCSPKQGAKPVISRMDEVKVVYEGQDITVYEL--LPAGHFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N ++ Q+PKWRLS+QTHK I IR
Sbjct: 154 -NVAETVACVMQHPKWRLSLQTHKLIDIR 181
>gi|307132359|ref|YP_003884375.1| hypothetical protein Dda3937_00204 [Dickeya dadantii 3937]
gi|306529888|gb|ADM99818.1| conserved protein [Dickeya dadantii 3937]
Length = 223
Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
LY I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MLYPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKRPE 49
Query: 57 ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
++ + ++ DLI++ G R+ V+TGGEP + PL QAL
Sbjct: 50 RQISLAEVLVKSGESDAWSGSSAGDLIQQIARQG-YTARHVVITGGEPCIHDLTPLTQAL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ---- 155
++GF +ET+GT E W+ VSPK D ++ E+K +
Sbjct: 109 EQQGFSTQIETSGTHEVRCSPNCWVTVSPKVNMRGGLAVLDQALQRANEIKHPVARERDI 168
Query: 156 --VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 169 EALDALLARLDDDKARVVALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|270293623|ref|ZP_06199825.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275090|gb|EFA20950.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 181
Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats.
Identities = 74/209 (35%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CPFCDTQH-----EDG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + + + +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 ILMSDEDIVTEV------SKYPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L+I E+K+V+ +++ F LQP
Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITVYEQ--LPAGHFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181
>gi|294775146|ref|ZP_06740672.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294450958|gb|EFG19432.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 193
Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats.
Identities = 76/210 (36%), Positives = 108/210 (51%), Gaps = 28/210 (13%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + I EIF +LQGEG H G AVF RFSGCNL +C FCDT
Sbjct: 11 LSMRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----E 54
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+G + + + + + + +LTGGEP L +D L+ AL+ G + +ETNG
Sbjct: 55 EGTLMSDEDIVMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNG 108
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
T P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP
Sbjct: 109 TCLLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSC-- 164
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT I+Y Q+P+WRLS+QTHK + I
Sbjct: 165 --ANTEEVIAYILQHPEWRLSLQTHKLLQI 192
>gi|160888847|ref|ZP_02069850.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492]
gi|156861746|gb|EDO55177.1| hypothetical protein BACUNI_01266 [Bacteroides uniformis ATCC 8492]
Length = 181
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 74/209 (35%), Positives = 99/209 (47%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CPFCDTQH-----EDG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + + +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 ILMSDEDIVTEVSR------YPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTH 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L+I E+K+V+ +++ F LQP
Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITVYEQ--LPAGHFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181
>gi|212693923|ref|ZP_03302051.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855]
gi|237724017|ref|ZP_04554498.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|212663455|gb|EEB24029.1| hypothetical protein BACDOR_03445 [Bacteroides dorei DSM 17855]
gi|229437681|gb|EEO47758.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 181
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G
Sbjct: 1 MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + +A + + + +LTGGEP L +D L+ AL+ G + +ETNGT
Sbjct: 45 TLMSDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTC 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP
Sbjct: 99 LLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT I+Y Q+P+WRLS+QTHK + I
Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180
>gi|242238307|ref|YP_002986488.1| hypothetical protein Dd703_0856 [Dickeya dadantii Ech703]
gi|242130364|gb|ACS84666.1| conserved hypothetical protein [Dickeya dadantii Ech703]
Length = 224
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 68/241 (28%), Positives = 98/241 (40%), Gaps = 49/241 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
M Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MPQYPINEMFQTLQGEGYFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWEKLA 49
Query: 58 --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
+ G + ++ + E R+ V+TGGEP + PL
Sbjct: 50 ERQSSLAEVLAKTAESDVWGAADATEILSSMRELG----YTARHVVITGGEPCIHDLTPL 105
Query: 104 IQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCD-------LKIKGGQELKLVFPQ 155
AL ++GF +ET+GT + W+ VSPK ++ E+K +
Sbjct: 106 TLALEQQGFSTQIETSGTHDVRCSPATWVTVSPKVNMRGGMAVLLSALQRADEIKHPVAR 165
Query: 156 ---VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
V+ D ++ +LQP+ EE T L I+ C WRLS+QTHK++
Sbjct: 166 ERDVDALDALLARLDDDKSRVVALQPVSQK--EEATRLCIATCIAR-NWRLSMQTHKYLN 222
Query: 210 I 210
I
Sbjct: 223 I 223
>gi|282600228|ref|ZP_05973516.2| radical SAM domain protein [Providencia rustigianii DSM 4541]
gi|282566364|gb|EFB71899.1| radical SAM domain protein [Providencia rustigianii DSM 4541]
Length = 230
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 92/237 (38%), Gaps = 41/237 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF TLQGEG G AVF R GC + C +CDT +
Sbjct: 8 MKYPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWDKEPA 56
Query: 62 GGR-------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
A+ + + ++ V+TGGEP + PL + L
Sbjct: 57 KESTLGDIALKTQDNDLWAMADAEALIQLMQQSGYTAKHIVITGGEPCIYDLNPLTETLE 116
Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCD-------LKIKGGQELKL-VFPQVNVS 159
GF+ +ET+GT W+ VSPK G + E+K V + ++
Sbjct: 117 TNGFQCQIETSGTYPILCTEKTWVTVSPKVGMKGGLKVLNQAVDRANEIKHPVAREKDIE 176
Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ + +LQP+ T L I C Q WRLS+QTHK++ I+
Sbjct: 177 ALDQLLARRTNNAPLIVALQPISQKVS--ATKLCIDTCIQR-NWRLSIQTHKYLNIQ 230
>gi|239996401|ref|ZP_04716925.1| radical activating enzyme [Alteromonas macleodii ATCC 27126]
Length = 224
Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 43/238 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
M +I E+F T+QGEG H G ++F R GC + C +CDT
Sbjct: 1 MSTLNINEMFETIQGEGAHTGIPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+G + Y + L+ E G ++ V+TGGEP + PL
Sbjct: 50 DLSVSPQAVITKGEESETYFISSEEALLAEFGKQG-YVAKHVVITGGEPCMYDLRPLTSL 108
Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCD-------LKIKGGQELKL------V 152
L+ G+ +ET+GT E ++ VSPK ++ E+K
Sbjct: 109 LHDNGYTTQIETSGTFEVLCDTRTYVTVSPKINMKGGYDVLVSALERANEIKHPIAMQKH 168
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+++ N D ++ LQP+ + T LA+ C + WRLS+QTHK+IGI
Sbjct: 169 IDELDALLANVSSLDGKQVCLQPISQ--QKRATELAVRTCIER-NWRLSLQTHKYIGI 223
>gi|150004624|ref|YP_001299368.1| hypothetical protein BVU_2083 [Bacteroides vulgatus ATCC 8482]
gi|254883105|ref|ZP_05255815.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319643625|ref|ZP_07998245.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A]
gi|149933048|gb|ABR39746.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|254835898|gb|EET16207.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317384794|gb|EFV65753.1| hypothetical protein HMPREF9011_03847 [Bacteroides sp. 3_1_40A]
Length = 181
Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats.
Identities = 76/208 (36%), Positives = 107/208 (51%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G
Sbjct: 1 MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + + + + +LTGGEP L +D L+ AL+ G + +ETNGT
Sbjct: 45 TLMSDEDIVMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHEGKYVCIETNGTC 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP
Sbjct: 99 LLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT I+Y Q+P+WRLS+QTHK + I
Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180
>gi|322831395|ref|YP_004211422.1| Radical SAM domain protein [Rahnella sp. Y9602]
gi|321166596|gb|ADW72295.1| Radical SAM domain protein [Rahnella sp. Y9602]
Length = 223
Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFETLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDKIAD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G +QL ++I +Q R+ V+TGGEP + L
Sbjct: 50 REVDMQRILVKTEESDAWGNATSEQLLEVIAQQG----YTARHVVITGGEPCIYDLTELT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLVFPQV 156
L K GF +ET+GT E W+ VSPK +K E+K +
Sbjct: 106 SLLEKSGFSCQIETSGTHEVRCSVNTWVTVSPKVNMRGGYDILPQALKRADEVKHPVARQ 165
Query: 157 ------NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E +LQP+ EE T L I+ C WRLS+QTHK++ I
Sbjct: 166 RDIDALDALLETLTDSKARIIALQPISQK--EEATRLCIATCIAR-NWRLSMQTHKYLNI 222
>gi|251788459|ref|YP_003003180.1| hypothetical protein Dd1591_0822 [Dickeya zeae Ech1591]
gi|247537080|gb|ACT05701.1| conserved hypothetical protein [Dickeya zeae Ech1591]
Length = 223
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MRYPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTWERLPD 49
Query: 57 ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
++ + ++ +L+++ + G ++ V+TGGEP + PL QAL
Sbjct: 50 RQIPLADILVKSGESDAWSHSSSEELLQQMRLQG-YSAKHIVITGGEPCIHDLTPLTQAL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ---- 155
++GF +ET+GT E W+ VSPK D ++ E+K +
Sbjct: 109 EQQGFSTQIETSGTHEVRCSSACWVTVSPKVNMRGGLAVLDQALRRADEIKHPVARERDI 168
Query: 156 --VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 169 EALDALLARLDDDKPRVVALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|329955365|ref|ZP_08296273.1| radical SAM domain protein [Bacteroides clarus YIT 12056]
gi|328525768|gb|EGF52792.1| radical SAM domain protein [Bacteroides clarus YIT 12056]
Length = 181
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 75/208 (36%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF R SGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRLSGCNLK-----------CPFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+++ + G+ +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 VLMTDEEIMAEV------GKYPAMMVILTGGEPSLWIDREFVDRLHQLGKYVCIETNGTH 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
E P IDW+ SPK G L I E+K+V+ +++ + F LQP
Sbjct: 99 ELPDNIDWVTCSPKRGAKLSISRMDEVKVVYESQDITVYEQ--LPAKHFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + Q+PKWRLS+QTHK I I
Sbjct: 154 -NTVETVVRVMQHPKWRLSLQTHKLINI 180
>gi|325299596|ref|YP_004259513.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM
18170]
gi|324319149|gb|ADY37040.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170]
Length = 181
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 82/208 (39%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG HAG AVF RFSGCNL C FCDT
Sbjct: 1 MRKINEIFYSLQGEGAHAGTPAVFVRFSGCNLK-----------CIFCDTSHESG----- 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
++IEE + R ++TGGEP L +D L+ L+K G +AVETNGT
Sbjct: 45 ---TEMGDEEIIEEVC---KYPCRMVIMTGGEPGLWIDDALVDLLHKAGKYVAVETNGTQ 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ +DW+ SPK G L+++ E+K+V+ +VSP Y+ + + LQP
Sbjct: 99 VLPEAVDWVTCSPKEGTVLRVRHIDEVKVVYIGQDVSP--YLLIEAKEHFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+NT I Y ++P+WRLS+QTHK I I
Sbjct: 153 QNTEEVIEYIKKHPQWRLSLQTHKLINI 180
>gi|212711380|ref|ZP_03319508.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM
30120]
gi|212686109|gb|EEB45637.1| hypothetical protein PROVALCAL_02452 [Providencia alcalifaciens DSM
30120]
Length = 223
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 89/237 (37%), Gaps = 41/237 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF TLQGEG G AVF R GC + C +CDT +
Sbjct: 1 MKYPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWDKEPA 49
Query: 62 GGR-------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ A+ + + + ++ V+TGGEP + L Q L
Sbjct: 50 KESTLGDIALKTQDSDFWAMSDAESLIQLMLQNGYTAKHIVITGGEPCIYDLTALTQTLE 109
Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSP 160
GF+ +ET+GT W+ VSPK G + I E+K +
Sbjct: 110 ANGFQCQIETSGTYPILCTENTWVTVSPKVGMKGGLQVLEQAINRANEIKHPVAREKDIE 169
Query: 161 ENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+LQP+ T L I C Q WRLS+QTHK++ I+
Sbjct: 170 ALDQLLSLRTQGQLPIVALQPISQKTS--ATKLCIDTCIQR-NWRLSIQTHKYLNIQ 223
>gi|319901441|ref|YP_004161169.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
gi|319416472|gb|ADV43583.1| Radical SAM domain protein [Bacteroides helcogenes P 36-108]
Length = 181
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 75/209 (35%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGYHTGIPAVFIRFSGCNLK-----------CSFCDTHH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ D++ + + + +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 RLMSDDEIMEEV------RKYPAATVILTGGEPSLWIDSEFVDRLHRAGKYVCIETNGTH 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G +L+I G E+K+V+ +++ F LQP
Sbjct: 99 PLPDNIDWVTCSPKLGGNLRITGMDEVKVVYEGQDITVYEQ--LPAGHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N + +PKWRLS+QTHK I IR
Sbjct: 153 NNIGETVDCVMHHPKWRLSLQTHKLIDIR 181
>gi|294141101|ref|YP_003557079.1| radical activating enzyme [Shewanella violacea DSS12]
gi|293327570|dbj|BAJ02301.1| radical activating enzyme [Shewanella violacea DSS12]
Length = 222
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 95/237 (40%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MKYPVNEVFETIQGEGFFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDVLEK 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ G G R++ LI G + V+TGGEP + L
Sbjct: 50 NRVAPELVIQVDGEIG-RWSELTAEALINSFIRKG-FSANHVVITGGEPCIHDLTELTSQ 107
Query: 107 LNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCD-------LKIKGGQELKL-VFPQVN 157
LN +G+ +ET+GT E W+ VSPK ++ E+K V +
Sbjct: 108 LNSQGYATQIETSGTFEVICSDKTWVTVSPKVNMKAGMAVLTQALERADEIKHPVATSKH 167
Query: 158 VSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + I D + LQP+ T LA+ C + WRLS+QTHK++ I
Sbjct: 168 IDDLDELLEGIELDGKTICLQPISQK--PRATELAMKTCIER-NWRLSIQTHKYLNI 221
>gi|198274527|ref|ZP_03207059.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135]
gi|198272581|gb|EDY96850.1| hypothetical protein BACPLE_00675 [Bacteroides plebeius DSM 17135]
Length = 181
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF ++QGEG H G AVF RFSGCNL C FCDT G
Sbjct: 1 MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNLK-----------CPFCDTQH-----EDG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + G+ +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 ILMSDEEILSEV------GKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G + + E+K+V+ ++S + + LQP
Sbjct: 99 SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLSTYEEMT--AAVYYLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT I Y ++PKW+LS+QT K + +R
Sbjct: 153 QNTEEVIDYIKKHPKWKLSLQTQKILNVR 181
>gi|237708545|ref|ZP_04539026.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265751292|ref|ZP_06087355.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229457474|gb|EEO63195.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263238188|gb|EEZ23638.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 181
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 76/208 (36%), Positives = 107/208 (51%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL +C FCDT +G
Sbjct: 1 MRRINEIFYSLQGEGYHTGIPAVFVRFSGCNL-----------RCPFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + +A + + + +LTGGEP L +D L+ AL+ + +ETNGT
Sbjct: 45 TLMSDEDIAMEV------AKYSTQVVILTGGEPGLWIDEKLVDALHHERKYVCIETNGTC 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ IDW+ SPK G + + E+K+V+ +VS Y+ + LQP
Sbjct: 99 RLPENIDWVTCSPKEGAKINLDRIDEVKVVYVGQDVSA--YLDLSASHYFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT I+Y Q+P+WRLS+QTHK + I
Sbjct: 153 ANTEEVIAYILQHPEWRLSLQTHKLLQI 180
>gi|271501834|ref|YP_003334860.1| Radical SAM domain-containing protein [Dickeya dadantii Ech586]
gi|270345389|gb|ACZ78154.1| Radical SAM domain protein [Dickeya dadantii Ech586]
Length = 223
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 95/237 (40%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MRYPINEMFQTLQGEGFFTGVPAVFIRLQGCPV-----------GCSWCDTKHTW-DTLP 48
Query: 62 GGRYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ ++ ++ + + +Q R+ V+TGGEP + PL QAL
Sbjct: 49 ERQISLAEVLVKRGESDAWSSSSVEALLQQITQQGYSARHVVITGGEPCIHDLTPLTQAL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVS 159
++GF +ET+GT E W+ VSPK D ++ E+K +
Sbjct: 109 EQQGFSTQIETSGTHEVRCSSGCWVTVSPKVNMRGGLAVLDQALQRADEIKHPVARERDI 168
Query: 160 P------ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 169 EALEGLLARLDDDKVRVVALQPVSQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|317479410|ref|ZP_07938544.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
gi|316904484|gb|EFV26304.1| radical SAM superfamily protein [Bacteroides sp. 4_1_36]
Length = 181
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 74/209 (35%), Positives = 99/209 (47%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT G
Sbjct: 1 MRKINEIFYSLQGEGYHTGTPAVFIRFSGCNLK-----------CLFCDTQH-----EDG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + + +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 ILMSDEDIVTEVSR------YPAATVILTGGEPSLWIDREFVDCLHQAGKYVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L+I E+K+V+ +++ F LQP
Sbjct: 99 PLPDNIDWVTCSPKQGVKLEITRMNEVKVVYEGQDITVYEQ--LPAGHFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT + ++PKWRLS+QTHK I IR
Sbjct: 154 -NTAETVDCVMKHPKWRLSLQTHKLIDIR 181
>gi|329961992|ref|ZP_08300003.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
gi|328530640|gb|EGF57498.1| radical SAM domain protein [Bacteroides fluxus YIT 12057]
Length = 181
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFIRFSGCNLK-----------CSFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ D++ + + G+ +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 CLMSDDEIMEEV------GKYPAATVILTGGEPSLWIDGEFVDRLHRAGKYVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L I E+K+V+ +++ Y F LQP
Sbjct: 99 LLPGNIDWVTCSPKQGTRLGIARMDEVKVVYEGQDIT--GYEQLPAAHFFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
N + ++PKWRLS+QTHK I IR
Sbjct: 153 NNIGETVDCVMRHPKWRLSLQTHKLIDIR 181
>gi|258647408|ref|ZP_05734877.1| NrdG protein [Prevotella tannerae ATCC 51259]
gi|260852776|gb|EEX72645.1| NrdG protein [Prevotella tannerae ATCC 51259]
Length = 189
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 80/213 (37%), Positives = 108/213 (50%), Gaps = 28/213 (13%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + I EIF +LQGEG ++G ++F RFSGCNL C FCDT
Sbjct: 1 MTRFKINEIFYSLQGEGFYSGIASIFIRFSGCNLS-----------CSFCDTQH-----E 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G +Q+ D + ++ VLTGGEP L V LI L+ G + +ETNG
Sbjct: 45 TGELMTQEQILDQVTR------FPAKHVVLTGGEPSLFVTKELIDGLHAAGKYVCIETNG 98
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
P+GIDW+ +SPK +K ELK+VF +P + I + +QP D
Sbjct: 99 LHALPEGIDWVTLSPKT-AQTILKTCNELKVVFTDDTFNPHDEIK--AAHYFIQPCDMGN 155
Query: 181 LEENTNL---AISYCFQNPKWRLSVQTHKFIGI 210
+N + ISY +NP+WRLS+QTHK IGI
Sbjct: 156 SIKNNRILASCISYVKENPRWRLSLQTHKMIGI 188
>gi|224026000|ref|ZP_03644366.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM
18228]
gi|224019236|gb|EEF77234.1| hypothetical protein BACCOPRO_02751 [Bacteroides coprophilus DSM
18228]
Length = 181
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 81/208 (38%), Positives = 107/208 (51%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG HAG AVF RFSGCNL C FCDT +G
Sbjct: 1 MKKINEIFYSLQGEGYHAGTPAVFVRFSGCNLK-----------CDFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +E+ R +LTGGEP L +D L+ AL+ G + +ETNGT
Sbjct: 45 TEMENGDIVKAVEQ------YPCRMVILTGGEPGLWIDSALVDALHASGRYVCIETNGTC 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ IDW+ SPK G LK+ E+K+V+ +VS + + LQP
Sbjct: 99 LLPENIDWVTCSPKQGTSLKVAHVDEVKVVYLGQDVSA--CLDIPARHYFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+NT+ I+Y Q+P WRLS+QTHK I I
Sbjct: 153 QNTDEVIAYIKQHPVWRLSLQTHKLINI 180
>gi|283479535|emb|CAY75451.1| Uncharacterized protein ygcF [Erwinia pyrifoliae DSM 12163]
Length = 277
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 94/237 (39%), Gaps = 41/237 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ Y I E+F TLQGEG + G A+F R GC + C +CDT +
Sbjct: 54 LMQYPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLA 102
Query: 61 KGGRYNVDQLADLIE-------------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
D L +E E ++ V+TGGEP + PL AL
Sbjct: 103 DRETSLGDILLKTVETDAWGAADAPALLETIRRHGWTAKHIVITGGEPCIYDLTPLTAAL 162
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158
GF +ET+GT + W+ VSPK + + E+K V Q +V
Sbjct: 163 QDSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDV 222
Query: 159 SPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 223 DALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 276
>gi|188026339|ref|ZP_02961731.2| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827]
gi|188022533|gb|EDU60573.1| hypothetical protein PROSTU_03780 [Providencia stuartii ATCC 25827]
Length = 230
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 67/244 (27%), Positives = 92/244 (37%), Gaps = 49/244 (20%)
Query: 1 MKL------YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
M + Y I EIF TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MTMPESAMNYPINEIFQTLQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKH 49
Query: 55 VGIQGTKG---------GRYNVDQLA----DLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
+ + D A + ++ V+TGGEP + +
Sbjct: 50 TWEKEESKATTLGDIALKTVDTDTWALADSHELINLMKKQGYTAKHIVITGGEPCIYDLL 109
Query: 102 PLIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCD-------LKIKGGQELKLVF 153
PL L +G++ +ET+GT W+ VSPK G I E+K
Sbjct: 110 PLTCELENQGYQCQIETSGTYPIQCSDKTWVTVSPKVGMKGGLQVLTESINRANEIKHPV 169
Query: 154 PQVNVSPENYIGFDFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
+ E +R +LQP+ L T L I C WRLS+QTHK
Sbjct: 170 AREK-DIEELDKLLAKRTEKHAPVVALQPISQKSL--ATKLCIDTCIAR-NWRLSIQTHK 225
Query: 207 FIGI 210
++ I
Sbjct: 226 YLNI 229
>gi|152971643|ref|YP_001336752.1| coenzyme PQQ synthesis protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|262041519|ref|ZP_06014716.1| radical SAM domain protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330012239|ref|ZP_08307334.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
gi|150956492|gb|ABR78522.1| putative coenzyme PQQ synthesis protein, nitrogenase
iron-molybdenum domain [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|259041080|gb|EEW42154.1| radical SAM domain protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328533879|gb|EGF60548.1| radical SAM domain protein [Klebsiella sp. MS 92-3]
Length = 225
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 69/242 (28%), Positives = 96/242 (39%), Gaps = 50/242 (20%)
Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57
M + Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MTMQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKL 49
Query: 58 ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ K G + + L +I Q T R+ V+TGGEP + P
Sbjct: 50 ADREVSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT----ARHVVITGGEPCIHDLTP 105
Query: 103 LIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV-- 152
L L + GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 LTSLLEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVG 165
Query: 153 ----FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ E +LQP+ E+ T L I C WRLS+QTHK++
Sbjct: 166 RVRDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYL 222
Query: 209 GI 210
I
Sbjct: 223 NI 224
>gi|167763255|ref|ZP_02435382.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC
43183]
gi|167698549|gb|EDS15128.1| hypothetical protein BACSTE_01627 [Bacteroides stercoris ATCC
43183]
Length = 181
Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats.
Identities = 75/209 (35%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLK-----------CSFCDTQH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + G+ +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 VWMSDEEILAEV------GKYPAMTVILTGGEPSLWIDREFVDCLHRMGKYVCIETNGTH 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G L I E+K+V+ +++ F LQP
Sbjct: 99 SLPDNIDWVTCSPKQGAKLCISRMDEVKVVYEGQDIAVYE--SLPAGHFFLQPCSCS--- 153
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
NT ++ Q+PKWRLS+QTHK I I+
Sbjct: 154 -NTAETVACVMQHPKWRLSLQTHKLIEIK 181
>gi|146292953|ref|YP_001183377.1| radical activating enzyme [Shewanella putrefaciens CN-32]
gi|145564643|gb|ABP75578.1| radical activating enzyme [Shewanella putrefaciens CN-32]
Length = 222
Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEA 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G + AD + + R+ V+TGGEP + L +
Sbjct: 50 NKVSPEQVITVDGTIGRW--AEHTADSLIAAFNAKGFTARHIVITGGEPCMYDLRELTET 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +GF +ET+GT E W+ VSPK E+K N
Sbjct: 108 LHSQGFATQIETSGTFEVNCADNTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IDELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221
>gi|114047413|ref|YP_737963.1| radical activating enzyme [Shewanella sp. MR-7]
gi|113888855|gb|ABI42906.1| radical activating enzyme [Shewanella sp. MR-7]
Length = 222
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 42/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E+F T+QGEG G A+F R GC + C +CDT +
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTW-DLLE 48
Query: 62 GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + +Q+ A + E + R+ V+TGGEP + L AL
Sbjct: 49 ENKVSPEQVITVDGSVGRWANHTAQSLIEAFNAKGYTARHVVITGGEPCMYDLNELTHAL 108
Query: 108 NKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVS 159
+ GF +ET+GT E W+ VSPK + E+K N
Sbjct: 109 HAAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYQVLAQALIRANEIKHPIATENHI 168
Query: 160 PE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 169 DELDELLKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|167623866|ref|YP_001674160.1| radical SAM domain-containing protein [Shewanella halifaxensis
HAW-EB4]
gi|167353888|gb|ABZ76501.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4]
Length = 222
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 96/237 (40%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MKYPVNEVFETIQGEGTFTGVPAVFVRLQGCPV-----------GCSWCDTKQTWELLEA 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G R++ +L+ G ++ V+TGGEP L L Q
Sbjct: 50 NHVAKELVIQVDGTIG-RWSELSAEELVNAFKDKG-FNAKHIVITGGEPCLYDLTELTQY 107
Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +G++ +ET+GT + W+ VSPK K E+K N
Sbjct: 108 LHSQGYQTQIETSGTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATQNH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+S C WRLS+QTHK++ I
Sbjct: 168 IDELDELLEGIDLTDKTVCLQPISQK--ARATELAMSTCIAR-NWRLSIQTHKYLDI 221
>gi|310766631|gb|ADP11581.1| Uncharacterized protein ygcF [Erwinia sp. Ejp617]
Length = 223
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 91/236 (38%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG + G A+F R GC + C +CDT +
Sbjct: 1 MQYPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLAN 49
Query: 62 GGRYNVDQLADLIE-------------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
D L +E E ++ V+TGGEP + PL AL
Sbjct: 50 RETSLGDILLKTVETDAWGAADAPALLETIRRHGWTAKHIVITGGEPCIYDLTPLTAALQ 109
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
GF +ET+GT + W+ VSPK E+K V Q +V
Sbjct: 110 DSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALARADEVKHPVARQRDVD 169
Query: 160 PENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 170 ALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|304408669|ref|ZP_07390290.1| Radical SAM domain protein [Shewanella baltica OS183]
gi|307305498|ref|ZP_07585246.1| Radical SAM domain protein [Shewanella baltica BA175]
gi|304352490|gb|EFM16887.1| Radical SAM domain protein [Shewanella baltica OS183]
gi|306911801|gb|EFN42226.1| Radical SAM domain protein [Shewanella baltica BA175]
Length = 222
Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEV 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G D A + + R+ V+TGGEP + L +
Sbjct: 50 NKVTPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTET 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +GF +ET+GT + W+ VSPK K E+K N
Sbjct: 108 LHNQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IAELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|260599124|ref|YP_003211695.1| hypothetical protein CTU_33320 [Cronobacter turicensis z3032]
gi|260218301|emb|CBA33277.1| Uncharacterized protein ygcF [Cronobacter turicensis z3032]
Length = 223
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + ++L IE Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSIIAKTKESDKWGSASPEELLAAIERQ----AYTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
+ L G+ +ET+GT E W+ VSPK D + E+K
Sbjct: 106 ELLEAHGYSCQIETSGTHEVRCTTGTWVTVSPKVNMRGGYEVLDQALMRADEIKHPVGRM 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLARLHDERQRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|268315892|ref|YP_003289611.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252]
gi|262333426|gb|ACY47223.1| queuosine biosynthesis protein QueE [Rhodothermus marinus DSM 4252]
Length = 233
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 98/239 (41%), Positives = 123/239 (51%), Gaps = 36/239 (15%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL------SAQCR-FCDTD 53
M+ Y +KEI+ TLQGEG AGR AVF RF GCNLWSGR++DR A C +CDTD
Sbjct: 1 MRSYRVKEIWKTLQGEGFFAGRPAVFVRFVGCNLWSGRDEDRARDARRTGADCPRWCDTD 60
Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
F Y D+L ++E ++CVLTGGEPLLQ+D L++AL G+
Sbjct: 61 FR---KEGSRAYTADELVAAMQEVG----GPIQFCVLTGGEPLLQLDAALMRALKAAGYF 113
Query: 114 IAVETNGTIEPPQGI-----------DWICVSPKAGCD-LKIKGGQELKLVFPQ------ 155
+A+ETNGTI + DWI SPK D L ++ ELKLV P
Sbjct: 114 VAIETNGTISLREACTDPETGQVVAPDWIVCSPKLPEDRLALEYFDELKLVVPDYRPEQY 173
Query: 156 ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P G LQP DGP L E A+ +P WR+SVQTHK +G+
Sbjct: 174 ARFARRARPHRVGGRRIPLLWLQPEDGPRLAEAQRCAVELALAHPDWRVSVQTHKILGV 232
>gi|156932742|ref|YP_001436658.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894]
gi|156530996|gb|ABU75822.1| hypothetical protein ESA_00531 [Cronobacter sakazakii ATCC BAA-894]
Length = 223
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWETLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L IE Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSIIAKTKESDKWGAASPEDLLAAIERQ----AYTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
+ L G+ +ET+GT E W+ VSPK D + E+K
Sbjct: 106 ELLEAHGYSCQIETSGTHEVRCTTGTWVTVSPKVNMRGGYEVLDQALMRADEIKHPVGRM 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLARLHDERQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|317492851|ref|ZP_07951275.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918973|gb|EFV40308.1| radical SAM domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 223
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 96/240 (40%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MSYPINELFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEQLPE 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G DQL ++ E R+ V+TGGEP + PL
Sbjct: 50 REIGMNEILIKTAESDAWGSATPDQLLAILHE----RGYTARHVVITGGEPCIHDLRPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQ 155
+ LN+ GF +ET+GT E W+ VSPK +K E+K V +
Sbjct: 106 ELLNQHGFSCQIETSGTHEIRCSDATWVTVSPKVNMKGGMKVLESALIRADEVKHPVARE 165
Query: 156 VNVSPEN-----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ + +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEDLDTLLAVLHDDKQRIIALQPISQK--ESATKLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|198276623|ref|ZP_03209154.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135]
gi|198270148|gb|EDY94418.1| hypothetical protein BACPLE_02819 [Bacteroides plebeius DSM 17135]
Length = 181
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 82/208 (39%), Positives = 109/208 (52%), Gaps = 28/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MKKINEIFYSLQGEGFHVGTPAVFVRFSGCNLK-----------CEFCDTHH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + + + + +LTGGEP L VD LI AL+K G I +ETNGT
Sbjct: 45 VMMSDEEIVEKVCQ------YPCKTVILTGGEPGLWVDEDLIAALHKAGKYICIETNGTC 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+ IDW+ SPK G L++ E+K+VF +VSP + F + LQP
Sbjct: 99 VLPESIDWVTCSPKLGAPLRVNRIDEVKVVFLGQDVSPYLELKASF--YFLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + Y +P+WRLS+QTHK I I
Sbjct: 153 RNTAEVVEYIKSHPQWRLSLQTHKLIDI 180
>gi|292487226|ref|YP_003530098.1| hypothetical protein EAMY_0740 [Erwinia amylovora CFBP1430]
gi|291552645|emb|CBA19690.1| Uncharacterized protein ygcF [Erwinia amylovora CFBP1430]
Length = 255
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 67/241 (27%), Positives = 96/241 (39%), Gaps = 49/241 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
+ Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 32 LMQYPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLA 80
Query: 57 -------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
++ G + L + I T ++ V+TGGEP + PL
Sbjct: 81 NRETSLGDILLKTVESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIHDLTPL 136
Query: 104 IQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFP 154
AL GF +ET+GT E W+ VSPK + + E+K V
Sbjct: 137 TAALQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVAR 196
Query: 155 QVNVSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
Q +V + + +LQP+ + T L I C WRLS+QTHK++
Sbjct: 197 QRDVDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLN 253
Query: 210 I 210
I
Sbjct: 254 I 254
>gi|157369053|ref|YP_001477042.1| radical SAM domain-containing protein [Serratia proteamaculans 568]
gi|157320817|gb|ABV39914.1| Radical SAM domain protein [Serratia proteamaculans 568]
Length = 223
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEAN 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + +QL +I +Q R+ V+TGGEP + PL
Sbjct: 50 REVDMQRILVKTEESDAWGSASAEQLLAVIRQQG----YTARHVVITGGEPCIYDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKLV---- 152
+ L + G+ +ET+GT E W+ VSPK +K E+K
Sbjct: 106 ELLEEHGYGCQIETSGTHEIQCSAKTWVTVSPKVNMRGGMKVLSQALQRADEVKHPVGRE 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ EE T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|259909462|ref|YP_002649818.1| hypothetical protein EpC_28370 [Erwinia pyrifoliae Ep1/96]
gi|224965084|emb|CAX56616.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
Length = 223
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 93/236 (39%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG + G A+F R GC + C +CDT +
Sbjct: 1 MQYPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLAD 49
Query: 62 GGRYNVDQLADLIE-------------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
D L +E E ++ V+TGGEP + PL AL
Sbjct: 50 RETSLGDILLKTVETDAWGAADAPALLETIRRHGWTAKHIVITGGEPCIYDLTPLTAALQ 109
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVS 159
GF +ET+GT + W+ VSPK + + E+K V Q +V
Sbjct: 110 DSGFSCQIETSGTHQVRCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDVD 169
Query: 160 PENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 170 ALDELLATLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|188534838|ref|YP_001908635.1| hypothetical protein ETA_27180 [Erwinia tasmaniensis Et1/99]
gi|188029880|emb|CAO97764.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
Length = 223
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 94/236 (39%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG + G A+F R GC + C +CDT +
Sbjct: 1 MQYPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLAN 49
Query: 62 GGRYNVDQLADLIE-------------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
D L +E E ++ V+TGGEP + VPL AL
Sbjct: 50 RETSLGDILLKTVETDAWGAADAPALLETIRRHGWTAKHIVVTGGEPCIHDLVPLTAALQ 109
Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVS 159
GF +ET+GT E W+ VSPK + + E+K V Q +V
Sbjct: 110 DAGFSCQIETSGTHEVSCTAQTWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDVE 169
Query: 160 PENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 170 ALDELLGTLNDNKARIIALQPISQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|119469471|ref|ZP_01612375.1| queC protein [Alteromonadales bacterium TW-7]
gi|119447006|gb|EAW28276.1| queC protein [Alteromonadales bacterium TW-7]
Length = 221
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 40/234 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
+Y I E+F T+QGE G ++F R GC + C +CDT
Sbjct: 1 MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49
Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
++ + D A+ + E + + ++ V+TGGEP + + + L+
Sbjct: 50 KVSLDETVEKKADSDHWADASAEQVLELFKSRGYTAKHVVITGGEPCMYDLNQVCKLLHD 109
Query: 110 RGFEIAVETNGTIEP-PQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVSPE 161
GF +ET+GT E W+ VSPK +K E+K E
Sbjct: 110 NGFTTQIETSGTFEILAPEQTWVTVSPKINMRGGYEVLTSAMKRANEIKHPVAMQKHVEE 169
Query: 162 NYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
F + + LQP+ T LAI C WRLS+Q HK++GI
Sbjct: 170 LEELFAKTGVNPKLVYLQPISQKVS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 220
>gi|332140739|ref|YP_004426477.1| radical activating enzyme [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550761|gb|AEA97479.1| radical activating enzyme [Alteromonas macleodii str. 'Deep
ecotype']
Length = 224
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 43/238 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
M +I E+F T+QGEG H G ++F R GC + C +CDT
Sbjct: 1 MSTLNINEMFETIQGEGAHTGVPSIFVRLQGCPV-----------GCPWCDTKHTWEIKP 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+G + Y + +DL+ + G ++ V+TGGEP + PL
Sbjct: 50 DLSVTPEAVITKGQESETYFISNESDLLTQFGHEG-YVAKHVVITGGEPCMYDLRPLTTL 108
Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCD-------LKIKGGQELKL------V 152
L+ +G+ +ET+GT E ++ VSPK ++ E+K
Sbjct: 109 LHDKGYTTQIETSGTFEILCDERTYVTVSPKINMKGGYDVLISALERANEIKHPIAMQKH 168
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+++ N ++ LQP+ + T LA+ C + WRLS+QTHK+IGI
Sbjct: 169 IDELDALLANVSSLKGKQVCLQPISQ--QKRATELAVRTCIER-NWRLSLQTHKYIGI 223
>gi|168235995|ref|ZP_02661053.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194736116|ref|YP_002115902.1| radical SAM domain-containing protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|204928010|ref|ZP_03219210.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|194711618|gb|ACF90839.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197290769|gb|EDY30123.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|204322332|gb|EDZ07529.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q + R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVINRQ----DYTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|260061953|ref|YP_003195033.1| hypothetical protein RB2501_10187 [Robiginitalea biformata
HTCC2501]
gi|88783515|gb|EAR14686.1| hypothetical protein RB2501_10187 [Robiginitalea biformata
HTCC2501]
Length = 210
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEAFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWNA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + ++ + + V+TGGEPL+ PL L RG +I +ET+G
Sbjct: 60 DLHPPTAVDTIVRDAAAASD----TIVVTGGEPLMWDMAPLTSRLKSRGMKIHIETSGAY 115
Query: 123 EPPQGIDWICVSPKAGCDL---KIKGGQELKLVFPQVNVSPENYIGFDF----ERFSLQP 175
DWIC+SPK + ELK++ + + LQP
Sbjct: 116 PLTGTWDWICLSPKKNKAPVGDIHQRAHELKVIVYNRHDLKFAEEHAELTSPDCLLYLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E T L + Y NP+WR+S+QTHK++ I
Sbjct: 176 -EWSVRERVTPLIVEYVMANPRWRVSLQTHKYLNI 209
>gi|312171327|emb|CBX79586.1| Uncharacterized protein ygcF [Erwinia amylovora ATCC BAA-2158]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLAN 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L + I T ++ V+TGGEP + PL
Sbjct: 50 RETSLGDILLKTVESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIYDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQ 155
AL GF +ET+GT E W+ VSPK + + E+K V Q
Sbjct: 106 AALQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQ 165
Query: 156 VNVSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+V + + +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDVDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|16761723|ref|NP_457340.1| hypothetical protein STY3080 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16766257|ref|NP_461872.1| hypothetical protein STM2951 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29143207|ref|NP_806549.1| hypothetical protein t2852 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161615872|ref|YP_001589837.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550190|ref|ZP_02343947.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167993197|ref|ZP_02574292.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168231033|ref|ZP_02656091.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168242700|ref|ZP_02667632.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261911|ref|ZP_02683884.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168463900|ref|ZP_02697817.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168820338|ref|ZP_02832338.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194443979|ref|YP_002042196.1| hypothetical protein SNSL254_A3167 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194448254|ref|YP_002046911.1| radical SAM domain-containing protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472830|ref|ZP_03078814.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197250818|ref|YP_002147853.1| radical SAM domain-containing protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197261663|ref|ZP_03161737.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|198243481|ref|YP_002216919.1| radical SAM domain-containing protein [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200387574|ref|ZP_03214186.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205353891|ref|YP_002227692.1| hypothetical protein SG2855 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858211|ref|YP_002244862.1| hypothetical protein SEN2790 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213022667|ref|ZP_03337114.1| hypothetical protein Salmonelentericaenterica_08538 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
gi|213163461|ref|ZP_03349171.1| hypothetical protein Salmoneentericaenterica_26915 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213424925|ref|ZP_03357675.1| hypothetical protein SentesTyphi_03996 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213648292|ref|ZP_03378345.1| hypothetical protein SentesTy_13994 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852988|ref|ZP_03382520.1| hypothetical protein SentesT_09066 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224584735|ref|YP_002638533.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238909725|ref|ZP_04653562.1| hypothetical protein SentesTe_01135 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289811290|ref|ZP_06541919.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289829811|ref|ZP_06547326.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25511883|pir||AB0859 conserved hypothetical protein STY3080 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421502|gb|AAL21831.1| putative organic radical activating enzymes [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16504024|emb|CAD06057.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138840|gb|AAO70409.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161365236|gb|ABX69004.1| hypothetical protein SPAB_03664 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402642|gb|ACF62864.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406558|gb|ACF66777.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194459194|gb|EDX48033.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|195633215|gb|EDX51629.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197214521|gb|ACH51918.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197239918|gb|EDY22538.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197937997|gb|ACH75330.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199604672|gb|EDZ03217.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205273672|emb|CAR38662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205324832|gb|EDZ12671.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205328757|gb|EDZ15521.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205334576|gb|EDZ21340.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205338143|gb|EDZ24907.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342895|gb|EDZ29659.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349084|gb|EDZ35715.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206710014|emb|CAR34369.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224469262|gb|ACN47092.1| hypothetical protein SPC_3001 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261248086|emb|CBG25921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995084|gb|ACY89969.1| hypothetical protein STM14_3556 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159510|emb|CBW19029.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913972|dbj|BAJ37946.1| hypothetical protein STMDT12_C30030 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087368|emb|CBY97133.1| probable molybdenum cofactor biosynthesis protein A [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321225630|gb|EFX50684.1| Queuosine Biosynthesis QueE Radical SAM [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323131307|gb|ADX18737.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|326624683|gb|EGE31028.1| Radical SAM domain containing protein [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326629003|gb|EGE35346.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|191166820|ref|ZP_03028646.1| conserved hypothetical protein [Escherichia coli B7A]
gi|190903191|gb|EDV62914.1| conserved hypothetical protein [Escherichia coli B7A]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGSASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLKKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|237729740|ref|ZP_04560221.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908346|gb|EEH94264.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLYSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|37524702|ref|NP_928046.1| hypothetical protein plu0701 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784127|emb|CAE12996.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF TLQGEG G A+F R GC + C +CDT + +
Sbjct: 1 MFYPINEIFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEVE 49
Query: 62 GGRYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
R ++ + I ++ + R+ V+TGGEP L +PL + L
Sbjct: 50 KQR-TLETILLKTSESNEWSKASPKQITALFVQQKYTARHVVITGGEPCLYDLIPLTEEL 108
Query: 108 NKRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNV 158
G++ +ET+GT W+ VSPK ++ E+K V + ++
Sbjct: 109 ESLGYQCQIETSGTYHVKCSAATWVTVSPKVNMRGGYRILQQALQRANEIKYPVARERDI 168
Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ EE T L I C WR S+QTHK++ I
Sbjct: 169 EALDELLATLNDNSSRIIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222
>gi|304399225|ref|ZP_07381092.1| Radical SAM domain protein [Pantoea sp. aB]
gi|304353279|gb|EFM17659.1| Radical SAM domain protein [Pantoea sp. aB]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 96/240 (40%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MFYPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKRTD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L + I +Q T R+ V+TGGEP + PL
Sbjct: 50 RETSLGDILIKTVESDAWGDADAATLVNAIAQQGWT----ARHVVITGGEPAIYDLRPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
AL + GF+ +ET+GT E W+ VSPK + E+K +
Sbjct: 106 TALEQHGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLPQALSRADEIKHPVARE 165
Query: 156 -----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDVDALDLLLAGIDDTKARIIALQPISRKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|261822768|ref|YP_003260874.1| hypothetical protein Pecwa_3531 [Pectobacterium wasabiae WPP163]
gi|261606781|gb|ACX89267.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 96/240 (40%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAE 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + D + L+ +Q R+ V+TGGEP + PL
Sbjct: 50 RETSLDLVLVKTEESDAWGAASADDILALMVQQG----YTARHIVITGGEPCIHDLAPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
L K+GF +ET+GT + W+ VSPK D ++ E+K +
Sbjct: 106 LQLEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARE 165
Query: 156 -----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I+ C WRLS+QTHK++ I
Sbjct: 166 RDIEALDALLARLDDDKPRIVALQPISQK--EDATKLCIATCIAR-NWRLSMQTHKYLNI 222
>gi|56414895|ref|YP_151970.1| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197363823|ref|YP_002143460.1| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56129152|gb|AAV78658.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095300|emb|CAR60857.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLYSILAKIKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|86141192|ref|ZP_01059738.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis
MED217]
gi|85831751|gb|EAQ50206.1| hypothetical protein MED217_04222 [Leeuwenhoekiella blandensis
MED217]
Length = 213
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 18 LLPLMEEFYTIQGEGYHTGTPAYFIRVGGCDV-----------GCHWCDVK----ESWDA 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + A ++ +K + V+TGGEPL+ L L G ++ +ET+G
Sbjct: 63 AIHPPTEAAAIVA----NAKKYSKTIVITGGEPLMWDMNHLTSMLKAEGLQVHIETSGAY 118
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKL----VFPQVNVSPENYIGFDF---ERFSLQP 175
E DWIC+SPK K + +E ++ + + + + LQP
Sbjct: 119 ELSGHWDWICLSPKKRMLPKPRIYEEAHELKVIIYNKSDFAFAEEHAAKVNGNCQLFLQP 178
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ T L + Y NPKW++S+QTHK++ I
Sbjct: 179 -EWSVREKMTPLIVDYVMANPKWKVSLQTHKYLNI 212
>gi|292900399|ref|YP_003539768.1| hypothetical protein EAM_2701 [Erwinia amylovora ATCC 49946]
gi|291200247|emb|CBJ47375.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGVYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLAN 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L + I T ++ V+TGGEP + PL
Sbjct: 50 RETSLGDILLKTVESDAWGAADAPALLETIRRHGWT----AKHIVITGGEPCIHDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQ 155
AL GF +ET+GT E W+ VSPK + + E+K V Q
Sbjct: 106 AALQGSGFSCQIETSGTHEVHCTAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQ 165
Query: 156 VNVSPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+V + + +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDVDALDDLLATLSDNKARIIALQPVSQK--ADATQLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|113970395|ref|YP_734188.1| radical activating enzyme [Shewanella sp. MR-4]
gi|113885079|gb|ABI39131.1| radical activating enzyme [Shewanella sp. MR-4]
Length = 222
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 90/237 (37%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWGLLEE 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ G+ G + A + E + R+ V+TGGEP + L
Sbjct: 50 NKVSPQQVITVDGSVGRW--ANHTAQSLIEAFNAKGYTARHVVITGGEPCMYDLNELTHT 107
Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCD-------LKIKGGQELKLVFPQVNV 158
L+ GF +ET+GT E W+ VSPK + E+K N
Sbjct: 108 LHAAGFATQIETSGTFEVKCDADTWVTVSPKVNMKGGYQVLAQALTRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IDELDELLKGIDVSVKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|322614241|gb|EFY11173.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620945|gb|EFY17803.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624008|gb|EFY20842.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322628253|gb|EFY25042.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633372|gb|EFY30114.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322636051|gb|EFY32759.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639387|gb|EFY36075.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322643751|gb|EFY40302.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648214|gb|EFY44680.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656959|gb|EFY53244.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658025|gb|EFY54293.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664126|gb|EFY60325.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322673792|gb|EFY69891.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322677866|gb|EFY73929.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681040|gb|EFY77073.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685637|gb|EFY81631.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323194776|gb|EFZ79963.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200478|gb|EFZ85557.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323205060|gb|EFZ90043.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207739|gb|EFZ92685.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323214808|gb|EFZ99556.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222537|gb|EGA06902.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226417|gb|EGA10625.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230704|gb|EGA14822.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234945|gb|EGA19031.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238984|gb|EGA23034.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244658|gb|EGA28664.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247274|gb|EGA31240.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251806|gb|EGA35671.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323257493|gb|EGA41183.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263278|gb|EGA46815.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267530|gb|EGA51014.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272719|gb|EGA56125.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 223
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKSGFSCQIETSGTHEVCCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|117920607|ref|YP_869799.1| radical activating enzyme [Shewanella sp. ANA-3]
gi|117612939|gb|ABK48393.1| radical activating enzyme [Shewanella sp. ANA-3]
Length = 222
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 88/236 (37%), Gaps = 42/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E+F T+QGEG G A+F R GC + C +CDT +
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLEE 49
Query: 62 G--------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
GR+ LI+ R+ V+TGGEP + L L
Sbjct: 50 KKVSPEQVITVDGSVGRWANHTAQSLIDAFN-AKGYTARHVVITGGEPCMYDLNELTHTL 108
Query: 108 NKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVS 159
+ GF +ET+GT E W+ VSPK K E+K N
Sbjct: 109 HAAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKHPIATENHI 168
Query: 160 PE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 169 DELDELLKGIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|120598962|ref|YP_963536.1| radical activating enzyme [Shewanella sp. W3-18-1]
gi|120559055|gb|ABM24982.1| radical activating enzyme [Shewanella sp. W3-18-1]
gi|319426518|gb|ADV54592.1| Radical SAM domain protein [Shewanella putrefaciens 200]
Length = 222
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEA 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G + AD + + R+ V+TGGEP + L +
Sbjct: 50 NKVSPEQVITVDGTIGRW--AEHTADSLIAAFNAEGFTARHIVITGGEPCMYDLRELTET 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +GF +ET+GT E W+ VSPK E+K N
Sbjct: 108 LHSQGFATQIETSGTFEVNCADNTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IDELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLDI 221
>gi|24374045|ref|NP_718088.1| radical activating enzyme [Shewanella oneidensis MR-1]
gi|24348519|gb|AAN55532.1|AE015692_2 radical activating enzyme [Shewanella oneidensis MR-1]
Length = 222
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 92/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDLLET 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G + A + E + R+ V+TGGEP + L
Sbjct: 50 NKVSPEQVITVDGTVGRW--ANHTAQSLIEAFHAKGYTARHVVITGGEPCMYDLHELTHM 107
Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L++ GF +ET+GT E D W+ VSPK E+K N
Sbjct: 108 LHRAGFATQIETSGTFEVKCDKDTWVTVSPKVNMKGGYPVLAQALNRANEIKHPIATQNH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E + I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IDELDELLSDIDVSAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|270264011|ref|ZP_06192279.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13]
gi|270042204|gb|EFA15300.1| hypothetical protein SOD_f02250 [Serratia odorifera 4Rx13]
Length = 223
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEAN 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + +QL ++ +Q R+ V+TGGEP + PL
Sbjct: 50 REVDMQRILVKTEESDAWGSASAEQLLAVMRQQG----YTARHVVITGGEPCIYDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLV---- 152
Q L + G+ +ET+GT E W+ VSPK D ++ E+K
Sbjct: 106 QLLEENGYGCQIETSGTHEIQCSATTWVTVSPKVNMRGGMKVLDQALQRADEVKHPVGRE 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ EE T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDALLATLHDEKPRIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|212635182|ref|YP_002311707.1| Radical activating enzyme [Shewanella piezotolerans WP3]
gi|212556666|gb|ACJ29120.1| Radical activating enzyme [Shewanella piezotolerans WP3]
Length = 222
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 95/237 (40%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGYFTGVPAIFVRLQGCPV-----------GCAWCDTKHTWDVIEE 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G R++ L+ + ++ V+TGGEP +
Sbjct: 50 NRVAPELVIQVDGTIG-RWSELSSEQLVAAFK-SKGFTAKHIVITGGEPCMYDLTEFTHY 107
Query: 107 LNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCD-------LKIKGGQELKLVFPQVNV 158
L++ G++ +ET+GT E W+ VSPK ++ E+K N
Sbjct: 108 LHQMGYQTQIETSGTFEVACDSGTWVTVSPKINMKGGYKVLAQALERANEIKHPIATRNH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + + LQP+ T LA+ C + WRLS+QTHK++ I
Sbjct: 168 IDELDELLADIDINDKTVCLQPISQK--ARATELAMKTCIER-NWRLSIQTHKYLDI 221
>gi|283786677|ref|YP_003366542.1| hypothetical protein ROD_30371 [Citrobacter rodentium ICC168]
gi|282950131|emb|CBG89767.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 223
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 ALLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDILSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|300937751|ref|ZP_07152551.1| radical SAM domain protein [Escherichia coli MS 21-1]
gi|300457230|gb|EFK20723.1| radical SAM domain protein [Escherichia coli MS 21-1]
Length = 223
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I EIF TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEIFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|319642227|ref|ZP_07996886.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A]
gi|317386083|gb|EFV67003.1| hypothetical protein HMPREF9011_02486 [Bacteroides sp. 3_1_40A]
Length = 181
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF ++QGEG H G AVF RFSGCNL C FCDT G
Sbjct: 1 MKKVNEIFYSIQGEGYHTGTPAVFVRFSGCNLK-----------CPFCDTQH-----EDG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + G+ +LTGGEP L +D + L++ G + +ETNGT
Sbjct: 45 ILMSDEEILSEV------GKYPAVMVILTGGEPSLWIDREFVDRLHRIGKYVCIETNGTR 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P IDW+ SPK G + + E+K+V+ ++S + + LQP
Sbjct: 99 SLPNNIDWVTCSPKEGSNAIVVNPHEIKVVYTGQDLSTYEEMT--AAVYYLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT I Y ++PKW+LS+QT K + +R
Sbjct: 153 QNTEEVIGYIKKHPKWKLSLQTQKILNVR 181
>gi|227329734|ref|ZP_03833758.1| hypothetical protein PcarcW_21303 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 223
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAE 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + D + L+ ++ R+ V+TGGEP + PL
Sbjct: 50 RETSLDQVLVKTEESDAWGAASADDILALMAQEG----YTARHIVITGGEPCIHDLAPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
L K+GF +ET+GT + W+ VSPK D ++ E+K +
Sbjct: 106 LQLEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARE 165
Query: 156 -----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDALLARLDDDKPRIVALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|26249173|ref|NP_755213.1| hypothetical protein c3335 [Escherichia coli CFT073]
gi|91212137|ref|YP_542123.1| hypothetical protein UTI89_C3140 [Escherichia coli UTI89]
gi|110642915|ref|YP_670645.1| hypothetical protein ECP_2755 [Escherichia coli 536]
gi|117625003|ref|YP_853991.1| hypothetical protein APECO1_3756 [Escherichia coli APEC O1]
gi|191171179|ref|ZP_03032729.1| conserved hypothetical protein [Escherichia coli F11]
gi|215488094|ref|YP_002330525.1| hypothetical protein E2348C_3044 [Escherichia coli O127:H6 str.
E2348/69]
gi|218559762|ref|YP_002392675.1| hypothetical protein ECS88_3041 [Escherichia coli S88]
gi|218690896|ref|YP_002399108.1| hypothetical protein ECED1_3225 [Escherichia coli ED1a]
gi|218701268|ref|YP_002408897.1| hypothetical protein ECIAI39_2968 [Escherichia coli IAI39]
gi|227888313|ref|ZP_04006118.1| radical SAM domain protein [Escherichia coli 83972]
gi|237706601|ref|ZP_04537082.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300976266|ref|ZP_07173363.1| radical SAM domain protein [Escherichia coli MS 200-1]
gi|300976766|ref|ZP_07173583.1| radical SAM domain protein [Escherichia coli MS 45-1]
gi|301027570|ref|ZP_07190901.1| radical SAM domain protein [Escherichia coli MS 69-1]
gi|301049468|ref|ZP_07196426.1| radical SAM domain protein [Escherichia coli MS 185-1]
gi|306812345|ref|ZP_07446543.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101]
gi|312964958|ref|ZP_07779198.1| uncharacterized protein ygcF [Escherichia coli 2362-75]
gi|331658886|ref|ZP_08359828.1| putative Organic radical activating enzyme [Escherichia coli TA206]
gi|26109580|gb|AAN81783.1|AE016765_185 Hypothetical protein ygcF [Escherichia coli CFT073]
gi|50250397|emb|CAG25841.1| hypothetical protein ygcF [Escherichia coli]
gi|91073711|gb|ABE08592.1| hypothetical protein YgcF [Escherichia coli UTI89]
gi|110344507|gb|ABG70744.1| hypothetical protein YgcF [Escherichia coli 536]
gi|115514127|gb|ABJ02202.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|190908479|gb|EDV68068.1| conserved hypothetical protein [Escherichia coli F11]
gi|215266166|emb|CAS10592.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
gi|218366531|emb|CAR04284.1| conserved hypothetical protein [Escherichia coli S88]
gi|218371254|emb|CAR19087.1| conserved hypothetical protein [Escherichia coli IAI39]
gi|218428460|emb|CAR09385.2| conserved hypothetical protein [Escherichia coli ED1a]
gi|222034465|emb|CAP77207.1| Uncharacterized protein ygcF [Escherichia coli LF82]
gi|226899641|gb|EEH85900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227834582|gb|EEJ45048.1| radical SAM domain protein [Escherichia coli 83972]
gi|281179780|dbj|BAI56110.1| conserved hypothetical protein [Escherichia coli SE15]
gi|294493229|gb|ADE91985.1| conserved hypothetical protein [Escherichia coli IHE3034]
gi|300298699|gb|EFJ55084.1| radical SAM domain protein [Escherichia coli MS 185-1]
gi|300308611|gb|EFJ63131.1| radical SAM domain protein [Escherichia coli MS 200-1]
gi|300394899|gb|EFJ78437.1| radical SAM domain protein [Escherichia coli MS 69-1]
gi|300409952|gb|EFJ93490.1| radical SAM domain protein [Escherichia coli MS 45-1]
gi|305854383|gb|EFM54821.1| hypothetical protein ECNC101_10539 [Escherichia coli NC101]
gi|307554747|gb|ADN47522.1| conserved hypothetical protein [Escherichia coli ABU 83972]
gi|307625657|gb|ADN69961.1| hypothetical protein UM146_02700 [Escherichia coli UM146]
gi|312290514|gb|EFR18394.1| uncharacterized protein ygcF [Escherichia coli 2362-75]
gi|312947301|gb|ADR28128.1| hypothetical protein NRG857_13575 [Escherichia coli O83:H1 str. NRG
857C]
gi|315289297|gb|EFU48692.1| radical SAM domain protein [Escherichia coli MS 110-3]
gi|315293738|gb|EFU53090.1| radical SAM domain protein [Escherichia coli MS 153-1]
gi|315298732|gb|EFU57986.1| radical SAM domain protein [Escherichia coli MS 16-3]
gi|320194912|gb|EFW69541.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli
WV_060327]
gi|323188807|gb|EFZ74092.1| hypothetical protein ECRN5871_3230 [Escherichia coli RN587/1]
gi|323951009|gb|EGB46885.1| queuosine biosynthesis protein QueE [Escherichia coli H252]
gi|323957215|gb|EGB52939.1| queuosine biosynthesis protein QueE [Escherichia coli H263]
gi|324005736|gb|EGB74955.1| radical SAM domain protein [Escherichia coli MS 57-2]
gi|324015485|gb|EGB84704.1| radical SAM domain protein [Escherichia coli MS 60-1]
gi|330908805|gb|EGH37319.1| queuosine Biosynthesis QueE Radical SAM [Escherichia coli AA86]
gi|331053468|gb|EGI25497.1| putative Organic radical activating enzyme [Escherichia coli TA206]
Length = 223
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|268591373|ref|ZP_06125594.1| radical SAM domain protein [Providencia rettgeri DSM 1131]
gi|291313351|gb|EFE53804.1| radical SAM domain protein [Providencia rettgeri DSM 1131]
Length = 223
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 86/237 (36%), Gaps = 41/237 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF T+QGEG G AVF R GC + C +CDT +
Sbjct: 1 MKYPINEIFQTIQGEGVFTGVPAVFIRLQGCPV-----------GCSWCDTKQTWEKEQD 49
Query: 62 GGR-------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + ++ V+TGGEP + PL L
Sbjct: 50 KESTLGDIALKTIDSDAWAMADGEALVQLMKEKHFSAQHIVITGGEPCIYDLQPLTGILE 109
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVSP 160
+ G++ +ET+GT W+ VSPK G + E+K +
Sbjct: 110 QHGYQCQIETSGTYPIQCTDNTWVTVSPKVGMKGGLQVISQAVNRANEIKHPVAREKDIE 169
Query: 161 ENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+LQP+ T L I C Q WRLS+QTHK++ I+
Sbjct: 170 ALEKILALRTVETPPVVALQPISQK--AAATKLCIETCIQR-NWRLSIQTHKYLDIQ 223
>gi|126090177|ref|YP_001041658.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155]
gi|126174470|ref|YP_001050619.1| radical activating enzyme [Shewanella baltica OS155]
gi|125997675|gb|ABN61750.1| radical activating enzyme [Shewanella baltica OS155]
gi|125999833|gb|ABN63903.1| hypothetical protein Sbal_4540 [Shewanella baltica OS155]
Length = 222
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEV 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G D A + + R+ V+TGGEP + L +
Sbjct: 50 NKVMPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTET 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +GF +ET+GT + W+ VSPK K E+K N
Sbjct: 108 LHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IAELDELLQDIDISAKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|74313345|ref|YP_311764.1| hypothetical protein SSON_2930 [Shigella sonnei Ss046]
gi|73856822|gb|AAZ89529.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|323167196|gb|EFZ52913.1| radical SAM superfamily protein [Shigella sonnei 53G]
Length = 223
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|253988156|ref|YP_003039512.1| hypothetical protein PAU_00675 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779606|emb|CAQ82767.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 223
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF TLQGEG G A+F R GC + C +CDT + +
Sbjct: 1 MFYPINEIFQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKKAE 49
Query: 62 GGRY---------NVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ D+ + I ++ R+ V+TGGEP + +PL + L
Sbjct: 50 KQQMLETILLKTNESDEWGEASPKQIATLFVQQGYTARHVVITGGEPCIYDLIPLTEELE 109
Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKA-------GCDLKIKGGQELKL-VFPQVNVS 159
G++ +ET+GT W+ VSPK ++ E+K V + ++
Sbjct: 110 NLGYQCQIETSGTYHVECSAATWVTVSPKVKMRGGYQVLQQALQRANEIKHPVARERDIE 169
Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 170 ALDELLATLDNNSSRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|160875275|ref|YP_001554591.1| radical activating enzyme [Shewanella baltica OS195]
gi|160860797|gb|ABX49331.1| radical activating enzyme [Shewanella baltica OS195]
gi|315267469|gb|ADT94322.1| Radical SAM domain protein [Shewanella baltica OS678]
Length = 222
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEV 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G D A + + R+ V+TGGEP + L +
Sbjct: 50 NKVTPEQVITVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTET 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +GF +ET+GT + W+ VSPK K E+K N
Sbjct: 108 LHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IAELDELLQGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|117620682|ref|YP_856352.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562089|gb|ABK39037.1| radical activating enzyme [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 237
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I EIF T+QGEG G A+F R GC + C +CDT +
Sbjct: 15 MHYPINEIFQTIQGEGVFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPA 63
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ + + +Q+ ++ + R+ V+TGGEP L L
Sbjct: 64 REVGVQAVLDCSNESDGWSKMSTEQILASFQQLG----YQARHVVITGGEPCLYDLQDLS 119
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCD-------LKIKGGQELKLVFPQV 156
AL + G+++ +ET+GT E W+ VSPK ++ E+K
Sbjct: 120 AALIEAGYQVQIETSGTSEIQTHEQTWVTVSPKINMKGGLPVLVSALERANEIKHPVATE 179
Query: 157 NVSPENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E R +LQP+ T LA++ C WRLS+QTHK++ I
Sbjct: 180 RHVEELDALLATARLRENVVIALQPISQK--PRATQLAMTTCIAR-NWRLSIQTHKYLDI 236
>gi|288933817|ref|YP_003437876.1| radical SAM protein [Klebsiella variicola At-22]
gi|290511103|ref|ZP_06550472.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55]
gi|288888546|gb|ADC56864.1| Radical SAM domain protein [Klebsiella variicola At-22]
gi|289776096|gb|EFD84095.1| queuosine biosynthesis protein QueE [Klebsiella sp. 1_1_55]
Length = 223
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q T R+ V+TGGEP + PL
Sbjct: 50 REVSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT----ARHVVITGGEPCIHDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L + GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 SLLEQNGFSCQIETSGTHEVRCSHNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ E +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|227114089|ref|ZP_03827745.1| hypothetical protein PcarbP_14034 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 223
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAE 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + D + L+ +Q R+ V+TGGEP + PL
Sbjct: 50 RETSLDQVLVKTEESDAWGAASADDILALMVQQG----YTARHIVITGGEPCIHDLAPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
L K+GF +ET+GT + W+ VSPK D ++ E+K +
Sbjct: 106 LQLEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARE 165
Query: 156 -----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I+ C WRLS+QTHK++ I
Sbjct: 166 RDIEALDALLARLDDDKPRIVALQPISQKD--DATKLCIATCIAR-NWRLSMQTHKYLNI 222
>gi|56460021|ref|YP_155302.1| organic radical activating protein [Idiomarina loihiensis L2TR]
gi|56179031|gb|AAV81753.1| Organic radical activating enzyme [Idiomarina loihiensis L2TR]
Length = 233
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 91/237 (38%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I EIF TLQGEG G ++F R GC + C +CDT
Sbjct: 11 MSYRINEIFETLQGEGTFTGVPSIFLRLQGCPV-----------GCPWCDTQHTWETNPT 59
Query: 58 ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ +++ D+I G ++ V+TGGEP + +PL +AL
Sbjct: 60 DQVSIDALMAKTEASAKWSEMTAEDIIARFEQEG-YSAKHVVITGGEPAMFDLLPLGKAL 118
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPK-------AGCDLKIKGGQELKLVFPQVNVS 159
+G+++ +ET+GT E W+ VSPK + E+K
Sbjct: 119 EAKGYQLQIETSGTFELKVTDSTWVTVSPKLDMPGGYLVRPDCMARANEIKHPIAMQKHI 178
Query: 160 PENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ LQP+ T LA+ C WRLSVQ HK++ I
Sbjct: 179 DALDSLLERCPPKADAIICLQPISQ--RPRATELAMKTCIAR-NWRLSVQMHKYLNI 232
>gi|193071786|ref|ZP_03052680.1| conserved hypothetical protein [Escherichia coli E110019]
gi|300906700|ref|ZP_07124387.1| radical SAM domain protein [Escherichia coli MS 84-1]
gi|300920372|ref|ZP_07136808.1| radical SAM domain protein [Escherichia coli MS 115-1]
gi|301304544|ref|ZP_07210654.1| radical SAM domain protein [Escherichia coli MS 124-1]
gi|192954902|gb|EDV85411.1| conserved hypothetical protein [Escherichia coli E110019]
gi|300401505|gb|EFJ85043.1| radical SAM domain protein [Escherichia coli MS 84-1]
gi|300412622|gb|EFJ95932.1| radical SAM domain protein [Escherichia coli MS 115-1]
gi|300840148|gb|EFK67908.1| radical SAM domain protein [Escherichia coli MS 124-1]
gi|315256635|gb|EFU36603.1| radical SAM domain protein [Escherichia coli MS 85-1]
gi|323172921|gb|EFZ58552.1| hypothetical protein ECLT68_2322 [Escherichia coli LT-68]
Length = 223
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|296104445|ref|YP_003614591.1| radical SAM domain-containing protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058904|gb|ADF63642.1| radical SAM domain-containing protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 223
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q T R+ V+TGGEP + PL
Sbjct: 50 REVSLFSVLAKTKESDKWGAGSAEDLLAIIGRQGWT----ARHVVITGGEPCIHDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
+ L K G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 ELLEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDEKQRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|293392806|ref|ZP_06637124.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Serratia odorifera DSM 4582]
gi|291424665|gb|EFE97876.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Serratia odorifera DSM 4582]
Length = 223
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKEAN 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G +QL ++++ Q R+ V+TGGEP + +PL
Sbjct: 50 REVDMQRILVKTEESDAWGSATAEQLLEVVQRQG----YTARHIVITGGEPCIYDLIPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLV---- 152
+ G+ +ET+GT E W+ VSPK + + E+K
Sbjct: 106 KLFELNGYACQIETSGTHEILCTPSTWVTVSPKVNMRGGMKVLEQALMRADEIKHPVGRQ 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ + +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDALLDTLNDEKRRIIALQPISQKD--EATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|238896239|ref|YP_002920975.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae
NTUH-K2044]
gi|238548557|dbj|BAH64908.1| putative coenzyme PQQ synthesis protein [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 223
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q T R+ V+TGGEP + PL
Sbjct: 50 REVSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT----ARHVVITGGEPCIHDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L + GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 SLLEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ E +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|62181454|ref|YP_217871.1| hypothetical protein SC2884 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62129087|gb|AAX66790.1| putative Organic radical activating enzymes [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322715938|gb|EFZ07509.1| Radical SAM [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 223
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALGELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|238758186|ref|ZP_04619365.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236]
gi|238703516|gb|EEP96054.1| hypothetical protein yaldo0001_25950 [Yersinia aldovae ATCC 35236]
Length = 225
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 68/242 (28%), Positives = 94/242 (38%), Gaps = 50/242 (20%)
Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57
M++ Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQMQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKE 49
Query: 58 ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ G + QL DL +Q R+ V+TGGEP + P
Sbjct: 50 ADREVDMQRIMVKTAESDAWGSASEQQLLDLFIQQG----YTARHVVITGGEPAIYDLFP 105
Query: 103 LIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV-- 152
L L + G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 LTSQLEQAGYRCQIETSGTHEVRCSATTWVTVSPKVNMRGGLKVLPQALERADEIKHPVG 165
Query: 153 ----FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ E +LQP+ E T L I C WRLS+QTHK++
Sbjct: 166 RLRDIEALEALLETLTDDKKRIIALQPISQKD--EATKLCIETCIAR-NWRLSMQTHKYL 222
Query: 209 GI 210
I
Sbjct: 223 NI 224
>gi|330830002|ref|YP_004392954.1| Radical activating enzyme [Aeromonas veronii B565]
gi|328805138|gb|AEB50337.1| Radical activating enzyme [Aeromonas veronii B565]
Length = 230
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 95/237 (40%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I EIF T+QGEG G A+F R GC + C +CDT +
Sbjct: 8 MHYPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWVVDPA 56
Query: 58 ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + ++ A +I+ G + R+ V+TGGEP L L AL
Sbjct: 57 REVGKAAVLDRSNESDCWSQLSTAQIIKSFGELG-YQARHVVITGGEPCLYDLHELSSAL 115
Query: 108 NKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVS 159
G+++ +ET+GT E W+ VSPK G ++ E+K +
Sbjct: 116 LAAGYQVQIETSGTSEIKTHEQTWVTVSPKIGMKGGLPVLVSALERANEIKHPVATEHHI 175
Query: 160 PENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E +LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 176 EELDTLLATATLRPDVVIALQPISQK--PRATQLAMDTCIAR-NWRLSIQTHKYLDI 229
>gi|218709344|ref|YP_002416965.1| organic radical activating enzyme [Vibrio splendidus LGP32]
gi|218322363|emb|CAV18509.1| Organic radical activating enzyme [Vibrio splendidus LGP32]
Length = 222
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
+Y I E+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MYKINEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPED 49
Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++ + ++ E G ++ V+TGGEP + VPL +A
Sbjct: 50 ETSLGDIMVKTEDSPTWTAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFE 108
Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLV------FP 154
+ G +ET+GT E D W+ VSPK K+ E+K
Sbjct: 109 QHGCRCQIETSGTSEVKATPDTWVTVSPKVSMKAKLDILDSALVRANEIKHPVGTGKDIE 168
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ + +LQP+ E T L I C + WRLS+QTHK++ I
Sbjct: 169 QLDALIARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 221
>gi|293412124|ref|ZP_06654847.1| conserved hypothetical protein [Escherichia coli B354]
gi|291468895|gb|EFF11386.1| conserved hypothetical protein [Escherichia coli B354]
Length = 223
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYKVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|170018977|ref|YP_001723931.1| hypothetical protein EcolC_0935 [Escherichia coli ATCC 8739]
gi|312973008|ref|ZP_07787181.1| uncharacterized protein ygcF [Escherichia coli 1827-70]
gi|169753905|gb|ACA76604.1| conserved hypothetical protein [Escherichia coli ATCC 8739]
gi|310332950|gb|EFQ00164.1| uncharacterized protein ygcF [Escherichia coli 1827-70]
gi|323941542|gb|EGB37724.1| queuosine biosynthesis protein QueE [Escherichia coli E482]
Length = 223
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAIIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|206580457|ref|YP_002236871.1| radical SAM domain protein [Klebsiella pneumoniae 342]
gi|206569515|gb|ACI11291.1| radical SAM domain protein [Klebsiella pneumoniae 342]
Length = 223
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q T R+ V+TGGEP + PL
Sbjct: 50 REVSLFSILAKTKESDKWGPASSEDLLAIIGRQGWT----ARHVVITGGEPCIHDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L + GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 SLLEQNGFSCQIETSGTHEVCCSHNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ E +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLETLSDDKPRIIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|218555326|ref|YP_002388239.1| hypothetical protein ECIAI1_2883 [Escherichia coli IAI1]
gi|300820561|ref|ZP_07100712.1| radical SAM domain protein [Escherichia coli MS 119-7]
gi|309795241|ref|ZP_07689660.1| radical SAM domain protein [Escherichia coli MS 145-7]
gi|331669510|ref|ZP_08370356.1| putative Organic radical activating enzyme [Escherichia coli TA271]
gi|331678753|ref|ZP_08379427.1| putative Organic radical activating enzyme [Escherichia coli H591]
gi|218362094|emb|CAQ99703.1| conserved hypothetical protein [Escherichia coli IAI1]
gi|300526825|gb|EFK47894.1| radical SAM domain protein [Escherichia coli MS 119-7]
gi|308121212|gb|EFO58474.1| radical SAM domain protein [Escherichia coli MS 145-7]
gi|320202418|gb|EFW76988.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli EC4100B]
gi|331063178|gb|EGI35091.1| putative Organic radical activating enzyme [Escherichia coli TA271]
gi|331073583|gb|EGI44904.1| putative Organic radical activating enzyme [Escherichia coli H591]
Length = 223
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGSASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|331664336|ref|ZP_08365242.1| putative Organic radical activating enzyme [Escherichia coli TA143]
gi|284922713|emb|CBG35801.1| conserved hypothetical protein [Escherichia coli 042]
gi|331058267|gb|EGI30248.1| putative Organic radical activating enzyme [Escherichia coli TA143]
Length = 223
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|253689736|ref|YP_003018926.1| hypothetical protein PC1_3374 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756314|gb|ACT14390.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 223
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAE 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + D + L+ +Q R+ V+TGGEP + PL
Sbjct: 50 RETSLDQVLVKTEESDAWGAASADDILALMTQQG----YTARHIVITGGEPCIHDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
L K+GF +ET+GT + W+ VSPK D ++ E+K +
Sbjct: 106 LQLEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARE 165
Query: 156 -----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I+ C WRLS+QTHK++ I
Sbjct: 166 RDIEALDALLARLDDDKPRIVALQPISQKD--DATKLCIATCIAR-NWRLSMQTHKYLNI 222
>gi|50122475|ref|YP_051642.1| hypothetical protein ECA3554 [Pectobacterium atrosepticum SCRI1043]
gi|49613001|emb|CAG76452.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 223
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G AVF R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAVFVRLQGCPV-----------GCSWCDTKHTWDKLAE 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + D + L+ +Q R+ V+TGGEP + PL
Sbjct: 50 RETSLDQVLVKTEESDAWGAASADDILALMAQQG----YTARHIVITGGEPCIHDLAPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
L K+GF +ET+GT + W+ VSPK D ++ E+K +
Sbjct: 106 LQLEKQGFSCQIETSGTHDVRCSPKTWVTVSPKVNMRGGMKVLDQALQRADEIKHPVARE 165
Query: 156 -----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I+ C WRLS+QTHK++ I
Sbjct: 166 RDIEALDTLLARLDDDKPRIVALQPISQKD--DATKLCIATCIAR-NWRLSMQTHKYLNI 222
>gi|110806555|ref|YP_690075.1| hypothetical protein SFV_2678 [Shigella flexneri 5 str. 8401]
gi|110616103|gb|ABF04770.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 223
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHAWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|82545074|ref|YP_409021.1| hypothetical protein SBO_2656 [Shigella boydii Sb227]
gi|187733920|ref|YP_001881485.1| hypothetical protein SbBS512_E3099 [Shigella boydii CDC 3083-94]
gi|193065022|ref|ZP_03046097.1| conserved hypothetical protein [Escherichia coli E22]
gi|209920225|ref|YP_002294309.1| hypothetical protein ECSE_3034 [Escherichia coli SE11]
gi|256019438|ref|ZP_05433303.1| hypothetical protein ShiD9_11027 [Shigella sp. D9]
gi|260845423|ref|YP_003223201.1| hypothetical protein ECO103_3320 [Escherichia coli O103:H2 str.
12009]
gi|260856887|ref|YP_003230778.1| hypothetical protein ECO26_3847 [Escherichia coli O26:H11 str.
11368]
gi|260869456|ref|YP_003235858.1| hypothetical protein ECO111_3501 [Escherichia coli O111:H- str.
11128]
gi|300815807|ref|ZP_07096031.1| radical SAM domain protein [Escherichia coli MS 107-1]
gi|300923910|ref|ZP_07139923.1| radical SAM domain protein [Escherichia coli MS 182-1]
gi|301325508|ref|ZP_07218983.1| radical SAM domain protein [Escherichia coli MS 78-1]
gi|81246485|gb|ABB67193.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|187430912|gb|ACD10186.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
gi|192927319|gb|EDV81938.1| conserved hypothetical protein [Escherichia coli E22]
gi|209913484|dbj|BAG78558.1| conserved hypothetical protein [Escherichia coli SE11]
gi|257755536|dbj|BAI27038.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
gi|257760570|dbj|BAI32067.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
gi|257765812|dbj|BAI37307.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
gi|300419842|gb|EFK03153.1| radical SAM domain protein [Escherichia coli MS 182-1]
gi|300531736|gb|EFK52798.1| radical SAM domain protein [Escherichia coli MS 107-1]
gi|300847675|gb|EFK75435.1| radical SAM domain protein [Escherichia coli MS 78-1]
gi|320183542|gb|EFW58388.1| Queuosine Biosynthesis QueE Radical SAM [Shigella flexneri CDC
796-83]
gi|323155006|gb|EFZ41198.1| radical SAM superfamily protein [Escherichia coli EPECa14]
gi|323159909|gb|EFZ45879.1| radical SAM superfamily protein [Escherichia coli E128010]
gi|323180206|gb|EFZ65758.1| radical SAM superfamily protein [Escherichia coli 1180]
gi|324016296|gb|EGB85515.1| radical SAM domain protein [Escherichia coli MS 117-3]
gi|332092167|gb|EGI97245.1| radical SAM superfamily protein [Shigella boydii 3594-74]
gi|332102910|gb|EGJ06256.1| conserved hypothetical protein [Shigella sp. D9]
Length = 223
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|27366011|ref|NP_761539.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6]
gi|37679724|ref|NP_934333.1| organic radical activating enzyme [Vibrio vulnificus YJ016]
gi|320156525|ref|YP_004188904.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus
MO6-24/O]
gi|27362211|gb|AAO11066.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus CMCP6]
gi|37198469|dbj|BAC94304.1| organic radical activating enzyme [Vibrio vulnificus YJ016]
gi|319931837|gb|ADV86701.1| queuosine Biosynthesis QueE Radical SAM [Vibrio vulnificus
MO6-24/O]
Length = 224
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 41/237 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEAAE 49
Query: 61 KGGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + + + A I EQ+ ++ V+TGGEP L L QA
Sbjct: 50 QDEQSFAEIIVKTGDSPTWCQADAAAIVEQYQRQGYSAKHIVITGGEPCLYDLTELTQAF 109
Query: 108 NKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
G + +ET+GT E W+ VSPK K+ E+K V Q ++
Sbjct: 110 EAIGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVGTQKDI 169
Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ E T L I C + WRLS+QTHK++ I
Sbjct: 170 DQLDALLLRAQVPATTVIALQPISQK--ERATQLCIDTCIKR-NWRLSIQTHKYLSI 223
>gi|15803295|ref|NP_289328.1| hypothetical protein Z4089 [Escherichia coli O157:H7 EDL933]
gi|25497213|pir||C85928 hypothetical protein ygcF [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517243|gb|AAG57887.1|AE005505_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 223
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 90/237 (37%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + ++ BL+ R+ V+TGGEP + +PL L
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEBLL-AVIGRQGYTARHVVITGGEPCIHDLLPLTDLL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV------F 153
K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 109 EKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDI 168
Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|295097341|emb|CBK86431.1| Organic radical activating enzymes [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 223
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q T R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAGSAEDLLAIISRQGWT----ARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLV---- 152
+ L K G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 ELLEKNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDEKQRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|161501996|ref|YP_001569108.1| hypothetical protein SARI_00012 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863343|gb|ABX19966.1| hypothetical protein SARI_00012 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 223
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q + R+ V+TGGEP + +PL
Sbjct: 50 REVSLYSILAKTKESDKWGAASSEDLLTVINRQ----DYTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGCD-------LKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKSGFSSQIETSGTHEVLCTPNTWVTVSPKVNMRGGYDVLTQALERANEIKHPVGRI 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|157962169|ref|YP_001502203.1| radical SAM domain-containing protein [Shewanella pealeana ATCC
700345]
gi|157847169|gb|ABV87668.1| Radical SAM domain protein [Shewanella pealeana ATCC 700345]
Length = 222
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG H G A+F R GC + C +CDT
Sbjct: 1 MKYPVNEVFETIQGEGTHTGVPAIFVRLQGCPV-----------GCSWCDTKQTWELLED 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G R++ + L+ + + V+TGGEP L L Q
Sbjct: 50 NRVAPDLVIQVDGTVG-RWSELTVEQLV-SAFEDKGFTAKLVVITGGEPCLYDLSELTQY 107
Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCD-------LKIKGGQELKLVFPQVNV 158
L+ +G++ +ET+GT + D W+ VSPK + E+K
Sbjct: 108 LHAQGYQTQIETSGTFDVLCHPDTWVTVSPKVNMKGGYAVLAQALNRANEIKHPVATQKH 167
Query: 159 SPENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E + + + LQP+ + T LA+ C + WRLSVQTHK++ I
Sbjct: 168 IDELDLLLEDINLTGKTVCLQPISQ--IPRATELAMKTCIER-NWRLSVQTHKYLNI 221
>gi|332036527|gb|EGI72995.1| queuosine biosynthesis QueE radical SAM [Pseudoalteromonas
haloplanktis ANT/505]
Length = 221
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 40/234 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
+Y I E+F T+QGE G ++F R GC + C +CDT
Sbjct: 1 MYKINEVFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVY 49
Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
++ + + A+ I + + ++ V+TGGEP + P+ L++
Sbjct: 50 KVSLDETVEKKADSDHWANASAEQILALFQSRGYTAKHVVITGGEPCMFDLNPVCNLLHE 109
Query: 110 RGFEIAVETNGTIEP-PQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVSPE 161
GF +ET+GT E W+ VSPK +K E+K E
Sbjct: 110 HGFSTQIETSGTFEILAPEQTWVTVSPKINMRGGYEVLTSTMKRANEIKHPVAMQKHVEE 169
Query: 162 NYIGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
F + + LQP+ T LAI C WRLS+Q HK++GI
Sbjct: 170 LEELFAKTGVNPKLVYLQPISQKVS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 220
>gi|331648502|ref|ZP_08349590.1| putative Organic radical activating enzyme [Escherichia coli M605]
gi|331042249|gb|EGI14391.1| putative Organic radical activating enzyme [Escherichia coli M605]
Length = 223
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 92/237 (38%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + ++ DL+ G R+ V+TGGEP + +PL L
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLVVIGRQG-YTARHVVITGGEPCIHDLLPLTDLL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV------F 153
K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 109 EKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDI 168
Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 169 EALDELLATLTDDKPRVIALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 222
>gi|15832887|ref|NP_311660.1| hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai]
gi|16130684|ref|NP_417257.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
gi|24114061|ref|NP_708571.1| hypothetical protein SF2790 [Shigella flexneri 2a str. 301]
gi|30064123|ref|NP_838294.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T]
gi|82778146|ref|YP_404495.1| hypothetical protein SDY_2981 [Shigella dysenteriae Sd197]
gi|89109563|ref|AP_003343.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
gi|157155007|ref|YP_001464098.1| hypothetical protein EcE24377A_3080 [Escherichia coli E24377A]
gi|157162228|ref|YP_001459546.1| hypothetical protein EcHS_A2918 [Escherichia coli HS]
gi|168749899|ref|ZP_02774921.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|168758464|ref|ZP_02783471.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|168762823|ref|ZP_02787830.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|168768869|ref|ZP_02793876.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|168778760|ref|ZP_02803767.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|168788031|ref|ZP_02813038.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|168802847|ref|ZP_02827854.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|170082350|ref|YP_001731670.1| hypothetical protein ECDH10B_2944 [Escherichia coli str. K-12
substr. DH10B]
gi|170682101|ref|YP_001744934.1| hypothetical protein EcSMS35_2910 [Escherichia coli SMS-3-5]
gi|170766131|ref|ZP_02900942.1| conserved hypothetical protein [Escherichia albertii TW07627]
gi|188495163|ref|ZP_03002433.1| conserved hypothetical protein [Escherichia coli 53638]
gi|194434862|ref|ZP_03067109.1| conserved hypothetical protein [Shigella dysenteriae 1012]
gi|194438962|ref|ZP_03071046.1| conserved hypothetical protein [Escherichia coli 101-1]
gi|195939488|ref|ZP_03084870.1| hypothetical protein EscherichcoliO157_24278 [Escherichia coli
O157:H7 str. EC4024]
gi|208805739|ref|ZP_03248076.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4206]
gi|208813020|ref|ZP_03254349.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4045]
gi|208819186|ref|ZP_03259506.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4042]
gi|209398503|ref|YP_002272239.1| hypothetical protein ECH74115_4033 [Escherichia coli O157:H7 str.
EC4115]
gi|217327761|ref|ZP_03443844.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
TW14588]
gi|218547712|ref|YP_002381503.1| hypothetical protein EFER_0293 [Escherichia fergusonii ATCC 35469]
gi|218696375|ref|YP_002404042.1| hypothetical protein EC55989_3051 [Escherichia coli 55989]
gi|218706272|ref|YP_002413791.1| hypothetical protein ECUMN_3104 [Escherichia coli UMN026]
gi|238901913|ref|YP_002927709.1| hypothetical protein BWG_2512 [Escherichia coli BW2952]
gi|253772373|ref|YP_003035204.1| hypothetical protein ECBD_0953 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254037826|ref|ZP_04871884.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|254162703|ref|YP_003045811.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606]
gi|254794716|ref|YP_003079553.1| hypothetical protein ECSP_3726 [Escherichia coli O157:H7 str.
TW14359]
gi|256024721|ref|ZP_05438586.1| hypothetical protein E4_15200 [Escherichia sp. 4_1_40B]
gi|261226072|ref|ZP_05940353.1| hypothetical protein EscherichiacoliO157_15958 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261256672|ref|ZP_05949205.1| hypothetical protein EscherichiacoliO157EcO_12655 [Escherichia coli
O157:H7 str. FRIK966]
gi|291284103|ref|YP_003500921.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str.
CB9615]
gi|293406268|ref|ZP_06650194.1| aconitate hydratase [Escherichia coli FVEC1412]
gi|293416022|ref|ZP_06658662.1| ygcF protein [Escherichia coli B185]
gi|293449103|ref|ZP_06663524.1| ygcF protein [Escherichia coli B088]
gi|298382006|ref|ZP_06991603.1| ygcF protein [Escherichia coli FVEC1302]
gi|300899636|ref|ZP_07117868.1| radical SAM domain protein [Escherichia coli MS 198-1]
gi|300931233|ref|ZP_07146574.1| radical SAM domain protein [Escherichia coli MS 187-1]
gi|300950504|ref|ZP_07164414.1| radical SAM domain protein [Escherichia coli MS 116-1]
gi|300958089|ref|ZP_07170250.1| radical SAM domain protein [Escherichia coli MS 175-1]
gi|301020692|ref|ZP_07184762.1| radical SAM domain protein [Escherichia coli MS 196-1]
gi|301645261|ref|ZP_07245212.1| radical SAM domain protein [Escherichia coli MS 146-1]
gi|307139461|ref|ZP_07498817.1| hypothetical protein EcolH7_15212 [Escherichia coli H736]
gi|307312795|ref|ZP_07592425.1| Radical SAM domain protein [Escherichia coli W]
gi|309786123|ref|ZP_07680751.1| uncharacterized protein ygcF [Shigella dysenteriae 1617]
gi|331643461|ref|ZP_08344592.1| putative Organic radical activating enzyme [Escherichia coli H736]
gi|331654257|ref|ZP_08355257.1| putative Organic radical activating enzyme [Escherichia coli M718]
gi|331684398|ref|ZP_08384990.1| putative Organic radical activating enzyme [Escherichia coli H299]
gi|54040228|sp|P64555|YGCF_ECO57 RecName: Full=7-carboxy-7-deazaguanine synthase homolog
gi|54040229|sp|P64556|YGCF_SHIFL RecName: Full=7-carboxy-7-deazaguanine synthase homolog
gi|54042396|sp|P64554|YGCF_ECOLI RecName: Full=7-carboxy-7-deazaguanine synthase homolog
gi|882671|gb|AAA69287.1| ORF_f223 [Escherichia coli str. K-12 substr. MG1655]
gi|1789139|gb|AAC75819.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
gi|13363104|dbj|BAB37056.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24053188|gb|AAN44278.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042379|gb|AAP18104.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T]
gi|81242294|gb|ABB63004.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|85675596|dbj|BAE76851.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
W3110]
gi|157067908|gb|ABV07163.1| conserved hypothetical protein [Escherichia coli HS]
gi|157077037|gb|ABV16745.1| conserved hypothetical protein [Escherichia coli E24377A]
gi|169890185|gb|ACB03892.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
gi|170125277|gb|EDS94208.1| conserved hypothetical protein [Escherichia albertii TW07627]
gi|170519819|gb|ACB17997.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
gi|188015830|gb|EDU53952.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|188490362|gb|EDU65465.1| conserved hypothetical protein [Escherichia coli 53638]
gi|189003552|gb|EDU72538.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|189354704|gb|EDU73123.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|189362097|gb|EDU80516.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|189366881|gb|EDU85297.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|189372100|gb|EDU90516.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|189375278|gb|EDU93694.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|194416881|gb|EDX33003.1| conserved hypothetical protein [Shigella dysenteriae 1012]
gi|194422083|gb|EDX38086.1| conserved hypothetical protein [Escherichia coli 101-1]
gi|208725540|gb|EDZ75141.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4206]
gi|208734297|gb|EDZ82984.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4045]
gi|208739309|gb|EDZ86991.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4042]
gi|209159903|gb|ACI37336.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4115]
gi|209761508|gb|ACI79066.1| hypothetical protein ECs3633 [Escherichia coli]
gi|209761510|gb|ACI79067.1| hypothetical protein ECs3633 [Escherichia coli]
gi|209761512|gb|ACI79068.1| hypothetical protein ECs3633 [Escherichia coli]
gi|209761514|gb|ACI79069.1| hypothetical protein ECs3633 [Escherichia coli]
gi|209761516|gb|ACI79070.1| hypothetical protein ECs3633 [Escherichia coli]
gi|217320128|gb|EEC28553.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
TW14588]
gi|218353107|emb|CAU98932.1| conserved hypothetical protein [Escherichia coli 55989]
gi|218355253|emb|CAQ87860.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
gi|218433369|emb|CAR14271.1| conserved hypothetical protein [Escherichia coli UMN026]
gi|226839450|gb|EEH71471.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|238860367|gb|ACR62365.1| conserved protein [Escherichia coli BW2952]
gi|242378324|emb|CAQ33101.1| conserved protein [Escherichia coli BL21(DE3)]
gi|253323417|gb|ACT28019.1| conserved hypothetical protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974604|gb|ACT40275.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606]
gi|253978769|gb|ACT44439.1| hypothetical protein ECD_02622 [Escherichia coli BL21(DE3)]
gi|254594116|gb|ACT73477.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
gi|260448173|gb|ACX38595.1| conserved hypothetical protein [Escherichia coli DH1]
gi|281602138|gb|ADA75122.1| hypothetical protein SFxv_3060 [Shigella flexneri 2002017]
gi|290763976|gb|ADD57937.1| hypothetical protein G2583_3426 [Escherichia coli O55:H7 str.
CB9615]
gi|291322193|gb|EFE61622.1| ygcF protein [Escherichia coli B088]
gi|291426274|gb|EFE99306.1| aconitate hydratase [Escherichia coli FVEC1412]
gi|291432211|gb|EFF05193.1| ygcF protein [Escherichia coli B185]
gi|298277146|gb|EFI18662.1| ygcF protein [Escherichia coli FVEC1302]
gi|299881782|gb|EFI89993.1| radical SAM domain protein [Escherichia coli MS 196-1]
gi|300315222|gb|EFJ65006.1| radical SAM domain protein [Escherichia coli MS 175-1]
gi|300356797|gb|EFJ72667.1| radical SAM domain protein [Escherichia coli MS 198-1]
gi|300450164|gb|EFK13784.1| radical SAM domain protein [Escherichia coli MS 116-1]
gi|300460946|gb|EFK24439.1| radical SAM domain protein [Escherichia coli MS 187-1]
gi|301076426|gb|EFK91232.1| radical SAM domain protein [Escherichia coli MS 146-1]
gi|306907230|gb|EFN37736.1| Radical SAM domain protein [Escherichia coli W]
gi|308925868|gb|EFP71347.1| uncharacterized protein ygcF [Shigella dysenteriae 1617]
gi|309703136|emb|CBJ02470.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|313647836|gb|EFS12282.1| uncharacterized protein ygcF [Shigella flexneri 2a str. 2457T]
gi|315062058|gb|ADT76385.1| conserved protein [Escherichia coli W]
gi|315137383|dbj|BAJ44542.1| hypothetical protein ECDH1ME8569_2686 [Escherichia coli DH1]
gi|315615162|gb|EFU95799.1| uncharacterized protein ygcF [Escherichia coli 3431]
gi|320182388|gb|EFW57285.1| Queuosine Biosynthesis QueE Radical SAM [Shigella boydii ATCC 9905]
gi|320189106|gb|EFW63765.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
str. EC1212]
gi|320640422|gb|EFX09961.1| hypothetical protein ECO5101_03379 [Escherichia coli O157:H7 str.
G5101]
gi|320645668|gb|EFX14653.1| hypothetical protein ECO9389_22861 [Escherichia coli O157:H- str.
493-89]
gi|320650968|gb|EFX19408.1| hypothetical protein ECO2687_10848 [Escherichia coli O157:H- str. H
2687]
gi|320656464|gb|EFX24360.1| hypothetical protein ECO7815_01005 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662360|gb|EFX29757.1| hypothetical protein ECO5905_04892 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667058|gb|EFX34021.1| hypothetical protein ECOSU61_08009 [Escherichia coli O157:H7 str.
LSU-61]
gi|323183315|gb|EFZ68712.1| hypothetical protein ECOK1357_3090 [Escherichia coli 1357]
gi|323377359|gb|ADX49627.1| Radical SAM domain protein [Escherichia coli KO11]
gi|323933926|gb|EGB30415.1| queuosine biosynthesis protein QueE [Escherichia coli E1520]
gi|323946500|gb|EGB42526.1| queuosine biosynthesis protein QueE [Escherichia coli H120]
gi|323960705|gb|EGB56329.1| queuosine biosynthesis protein QueE [Escherichia coli H489]
gi|323966752|gb|EGB62183.1| queuosine biosynthesis protein QueE [Escherichia coli M863]
gi|323971622|gb|EGB66853.1| queuosine biosynthesis protein QueE [Escherichia coli TA007]
gi|323978613|gb|EGB73695.1| queuosine biosynthesis protein QueE [Escherichia coli TW10509]
gi|324111402|gb|EGC05384.1| hypothetical protein ERIG_04120 [Escherichia fergusonii B253]
gi|324119819|gb|EGC13698.1| queuosine biosynthesis protein QueE [Escherichia coli E1167]
gi|325496184|gb|EGC94043.1| hypothetical protein ECD227_0281 [Escherichia fergusonii ECD227]
gi|326339155|gb|EGD62970.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
str. 1044]
gi|326342962|gb|EGD66730.1| Queuosine Biosynthesis QueE Radical SAM [Escherichia coli O157:H7
str. 1125]
gi|327251511|gb|EGE63197.1| hypothetical protein ECSTEC7V_3359 [Escherichia coli STEC_7v]
gi|331036932|gb|EGI09156.1| putative Organic radical activating enzyme [Escherichia coli H736]
gi|331047639|gb|EGI19716.1| putative Organic radical activating enzyme [Escherichia coli M718]
gi|331078013|gb|EGI49219.1| putative Organic radical activating enzyme [Escherichia coli H299]
gi|332087574|gb|EGI92702.1| hypothetical protein SB521682_3318 [Shigella boydii 5216-82]
gi|332087749|gb|EGI92876.1| hypothetical protein SD15574_3520 [Shigella dysenteriae 155-74]
Length = 223
Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|256425881|ref|YP_003126534.1| hypothetical protein Cpin_6932 [Chitinophaga pinensis DSM 2588]
gi|256040789|gb|ACU64333.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
Length = 209
Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F TLQGEG + G+ A F R GC++ C +CD +
Sbjct: 14 LPVMERFYTLQGEGNYQGQAAYFIRLGGCDV-----------GCHWCDVK----ESWDAS 58
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
R+ + +++L+ + GR V+TGGEPL+ PL AL+ F +ET+G+
Sbjct: 59 RHPLIAISELVRD---AAVHPGRIAVITGGEPLMHNLDPLTDALHAASFRTHMETSGSSP 115
Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQV-NVSPENYIGF---DFERFSLQPM 176
DWI +SP KA + ELK+V + + + LQP
Sbjct: 116 LSGHWDWITLSPKKFKAPLPEVCEVAHELKVVIFNKSDFAWAEKYAALAGPHCKLYLQPE 175
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ T L I Y +NPKW+LS+QTHK+I +
Sbjct: 176 WEK-SAQVTPLIIDYIKENPKWQLSLQTHKYINV 208
>gi|153000640|ref|YP_001366321.1| radical activating enzyme [Shewanella baltica OS185]
gi|151365258|gb|ABS08258.1| conserved hypothetical protein [Shewanella baltica OS185]
Length = 222
Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEA 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G D A + + R+ V+TGGEP + L +
Sbjct: 50 NKVTPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTET 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +GF +ET+GT + W+ VSPK K E+K N
Sbjct: 108 LHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IAELDELLQDIDISTKAICLQPISQK--PRATELAMKVCITR-NWRLSIQTHKYLNI 221
>gi|327395003|dbj|BAK12425.1| organic radical Activating YgcF [Pantoea ananatis AJ13355]
Length = 223
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKQAD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L I +Q T R+ V+TGGEP + PL
Sbjct: 50 RETSLGDILVKTVESDAWGNADTATLLSSIAQQGWT----ARHVVITGGEPAIYDLRPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQ 155
+L GF+ +ET+GT E W+ VSPK + E+K V Q
Sbjct: 106 ASLEAAGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQ 165
Query: 156 VNVSPEN-----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+V + +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 166 RDVEALDDLLAGIQDSKARIIALQPISRKD--EATKLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|291618623|ref|YP_003521365.1| YgcF [Pantoea ananatis LMG 20103]
gi|291153653|gb|ADD78237.1| YgcF [Pantoea ananatis LMG 20103]
Length = 223
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKQAD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L I +Q T R+ V+TGGEP + PL
Sbjct: 50 RETSLGDILVKTVESDAWGNADTATLLSSIAQQGWT----ARHAVITGGEPAIYDLRPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQ 155
+L GF+ +ET+GT E W+ VSPK + E+K V Q
Sbjct: 106 ASLEAAGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLAQALSRADEIKHPVARQ 165
Query: 156 VNVSPEN-----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+V + +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 166 RDVEALDDLLAGIQDSKARIIALQPISRKD--EATKLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|170726897|ref|YP_001760923.1| radical activating enzyme [Shewanella woodyi ATCC 51908]
gi|169812244|gb|ACA86828.1| radical activating enzyme [Shewanella woodyi ATCC 51908]
Length = 222
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG + G A+F R GC + C +CDT
Sbjct: 1 MKYPVNEVFETIQGEGFYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWELLDV 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G R++ ++LI E + V+TGGEP L + +
Sbjct: 50 NKVQPEMVIQVDGTIG-RWSELTTSELI-SFLKQKEFTASHVVITGGEPCLHDLTAMTEE 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPK-------AGCDLKIKGGQELKLVFPQVNV 158
N G+ +ET+GT E W+ VSPK A +K E+K +
Sbjct: 108 FNDAGYSTQIETSGTFEVHCSEKTWVTVSPKLKMKAGLAVLPQALKRANEIKHPVATASH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ N + + LQP+ T LA+ C + WRLS+QTHK++ I
Sbjct: 168 IDDLDELLNGVDLKGKTICLQPISQKT--RATELAMRVCIER-NWRLSIQTHKYLDI 221
>gi|146298250|ref|YP_001192841.1| radical SAM domain-containing protein [Flavobacterium johnsoniae
UW101]
gi|146152668|gb|ABQ03522.1| Radical SAM domain protein [Flavobacterium johnsoniae UW101]
Length = 210
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEEFYTIQGEGFHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + ++ V+TGGEPL L Q L + ++ +ET+G
Sbjct: 60 ELHPPTNIDIIVN----NASSYANTVVVTGGEPLTWDMTLLTQQLKDKNLKVHIETSGAY 115
Query: 123 EPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQP 175
DWIC+SPK ELK++ + + + D LQP
Sbjct: 116 PLSGTWDWICLSPKKNKLPTPDVYANAHELKVIIYNKHDFIFAEEQAELVNDNAILFLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ EE T L + Y NPKWR+S+QTHK++ I
Sbjct: 176 -EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209
>gi|217973439|ref|YP_002358190.1| radical activating enzyme [Shewanella baltica OS223]
gi|217498574|gb|ACK46767.1| radical activating enzyme [Shewanella baltica OS223]
Length = 222
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPV-----------GCAWCDTKQTWDVLEV 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G D A + + R+ V+TGGEP + L +
Sbjct: 50 NKVMPEQVISVDGTIGRW--ADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLCELTET 107
Query: 107 LNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
L+ +GF +ET+GT + W+ VSPK K E+K N
Sbjct: 108 LHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLTQALNRANEIKHPIATENH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IAELDELLQGIDISTKTICLQPISQK--PRATELAMKVCIAR-NWRLSIQTHKYLNI 221
>gi|299141903|ref|ZP_07035038.1| organic radical activating enzyme [Prevotella oris C735]
gi|298576754|gb|EFI48625.1| organic radical activating enzyme [Prevotella oris C735]
Length = 190
Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats.
Identities = 86/213 (40%), Positives = 111/213 (52%), Gaps = 28/213 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K Y + EIF +LQGEG + GR AVF RFSGCNL C FCDTDF
Sbjct: 3 KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNLK-----------CSFCDTDFKLYH--- 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + D + E G + VLTGGEP LQVD LI AL+ GF +A+E+NGT
Sbjct: 49 --EMTAEAIVDAVREWKTAG-----FVVLTGGEPTLQVDSQLIDALHAEGFYVAMESNGT 101
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD---G 178
PP +DW+ +SPK + + ELK +F P + +G + + + LQP D
Sbjct: 102 NVPPANLDWLTISPKEH--VVVTECNELKCIFDGQK--PVDDLGIEADYYYLQPCDVGND 157
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
T I Y +PKWRLS+QTHK IG +
Sbjct: 158 VQNRAITQACIRYIASHPKWRLSLQTHKMIGFQ 190
>gi|262171605|ref|ZP_06039283.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451]
gi|261892681|gb|EEY38667.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus MB-451]
Length = 222
Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
+Y I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESD 49
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + D+IE G + ++ V+TGGEP + L QA
Sbjct: 50 QTSFPQILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFE 108
Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G + +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 109 AIGCQCQIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168
Query: 160 PENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 NLDELLVRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221
>gi|260174975|ref|ZP_05761387.1| hypothetical protein BacD2_24170 [Bacteroides sp. D2]
gi|315923210|ref|ZP_07919450.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313697085|gb|EFS33920.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 181
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF ++QGEG G AVF RFSGCNL C FCDT G
Sbjct: 1 MKKINEIFYSIQGEGYRTGTPAVFVRFSGCNLK-----------CPFCDTQHSS-----G 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + R+ VLTGGEP LQVD I L++ G + +ETNGT+
Sbjct: 45 REMSDEEIIKEV------CFYPTRFVVLTGGEPGLQVDQEFINKLHQAGKFVQIETNGTV 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P GIDWI SPK G + + E+K+V+ ++S + + LQP
Sbjct: 99 PLPIGIDWITCSPKEGSKVFVVNPHEIKVVYTGQDLSTYEAMT--AAVYYLQPCSC---- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+NT I+Y ++PKW+LS+QT K + ++
Sbjct: 153 QNTEEVINYVKEHPKWKLSLQTQKILNVQ 181
>gi|331674271|ref|ZP_08375031.1| putative Organic radical activating enzyme [Escherichia coli TA280]
gi|331068365|gb|EGI39760.1| putative Organic radical activating enzyme [Escherichia coli TA280]
Length = 223
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWEKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVIGRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDDKPRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|157148316|ref|YP_001455635.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895]
gi|157085521|gb|ABV15199.1| hypothetical protein CKO_04133 [Citrobacter koseri ATCC BAA-895]
Length = 223
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLYSILAKTKESDKWGAASSEDLLAVISRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLSDDKPRIIALQPISQK--EDATRLCIETCIVR-NWRLSMQTHKYLNI 222
>gi|262165604|ref|ZP_06033341.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223]
gi|262025320|gb|EEY43988.1| queuosine Biosynthesis QueE Radical SAM [Vibrio mimicus VM223]
Length = 222
Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
+Y I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESD 49
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + D+IE G + ++ V+TGGEP + L QA
Sbjct: 50 QTSFPQILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFA 108
Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G + +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 109 AIGCQCQIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168
Query: 160 PENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 NLDELLVRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221
>gi|311278265|ref|YP_003940496.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
gi|308747460|gb|ADO47212.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
Length = 223
Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 90/240 (37%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDMLED 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + L I Q T R+ V+TGGEP + PL
Sbjct: 50 REVSLFSILAKTKESDKWGAATAEDLLTAITRQGWT----ARHVVITGGEPCIHDLTPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLV---- 152
L + G+ +ET+GT E W+ VSPK + E+K
Sbjct: 106 ALLEQNGYSCQIETSGTHEVRCSHSTWVTVSPKVNMRGGFEVLSQALHRADEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ E +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLETLSDDKQRVIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|290476591|ref|YP_003469496.1| putative coenzyme PQQ synthesis protein with nitrogenase
iron-molybdenum domain [Xenorhabdus bovienii SS-2004]
gi|289175929|emb|CBJ82732.1| putative coenzyme PQQ synthesis protein with nitrogenase
iron-molybdenum domain [Xenorhabdus bovienii SS-2004]
Length = 223
Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
+Y I EIF TLQGEG G +VF R GC + C +CDT
Sbjct: 1 MIYPINEIFQTLQGEGVFTGVPSVFIRLQGCPV-----------GCSWCDTKHTWEKEAD 49
Query: 57 ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
++ + +I +I R+ V+TGGEP L PL + L
Sbjct: 50 KQQPMENILVKSQDSDTWGAATARQII-NLFIRQGYTARHIVVTGGEPCLYNLRPLTETL 108
Query: 108 NKRGFEIAVETNGTI-EPPQGIDWICVSPKA-------GCDLKIKGGQELKLVF---PQV 156
G++ +ET+GT W+ VSPK + E+K +
Sbjct: 109 ESEGYQCQIETSGTHAIQCSEKTWVTVSPKVKMRGGYQVLPEAMNRANEIKHPVGRERDI 168
Query: 157 NVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E D + +LQP+ EE T L I C WR S+QTHK++ I
Sbjct: 169 EALDELLTMLDEKADPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLNI 222
>gi|157375186|ref|YP_001473786.1| radical activating enzyme [Shewanella sediminis HAW-EB3]
gi|157317560|gb|ABV36658.1| radical activating enzyme [Shewanella sediminis HAW-EB3]
Length = 222
Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 99/237 (41%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MKYPVNEVFETIQGEGFFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWDVIEE 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G + A+ + + ++ V+TGGEP L +PL ++
Sbjct: 50 NRVAPELVIQVDGTIGRW--AELTAEELISNFKAKGFTAKHVVITGGEPCLHDLIPLTES 107
Query: 107 LNKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCD-------LKIKGGQELKL-VFPQVN 157
LN G+ +ET+GT E W+ VSPK + E+K V Q +
Sbjct: 108 LNLSGYATQIETSGTFEVICSDKTWVTVSPKINMKAGLPILNQALIRANEIKHPVATQAH 167
Query: 158 VSPENY----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + I D + LQP+ T LA+ C + WRLS+QTHK++ I
Sbjct: 168 IDDLDCLLKGISLDEKTICLQPISQK--SRATELAMRVCIER-NWRLSIQTHKYLEI 221
>gi|163752023|ref|ZP_02159232.1| radical activating enzyme [Shewanella benthica KT99]
gi|161328075|gb|EDP99244.1| radical activating enzyme [Shewanella benthica KT99]
Length = 222
Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 96/236 (40%), Gaps = 42/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E+F T+QGEG G A+F R GC + C +CDT K
Sbjct: 1 MKYPVNEVFETIQGEGVFTGVAAIFVRLQGCPV-----------GCSWCDTKHTWDVLEK 49
Query: 62 G--------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
GR++ +LI +I ++ V+TGGEP + L L
Sbjct: 50 NRVAPELVIQVDGVIGRWSELTAEELI-NFFIRKGFNAKHVVITGGEPCIHDLTELTSQL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVS 159
N++G+ +ET+GT E W+ VSPK ++ E+K +
Sbjct: 109 NRQGYGTQIETSGTFEVTCSDKTWVTVSPKVNMKAGMTVLTQALERADEIKHPVARSKHI 168
Query: 160 PE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ I + + LQP+ T LA+ C + WRLS+QTHK++ I
Sbjct: 169 DDLDELLEGIEVEGKIICLQPISQK--PRATELAMKICIER-NWRLSIQTHKYLNI 221
>gi|85058492|ref|YP_454194.1| hypothetical protein SG0514 [Sodalis glossinidius str. 'morsitans']
gi|84779012|dbj|BAE73789.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 223
Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + EIF TLQGEG G A+F R GC + C +CDT Q +
Sbjct: 1 MQYPLNEIFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWQQ-DE 48
Query: 62 GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
R ++ A+ I + R+ V+TGGEP L +PL L
Sbjct: 49 AERVTAGEIPLKTADSSRWASITAEEIIALMVKQGWTARHVVITGGEPCLHDLMPLTHTL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLV------F 153
++GF +ET+GT E W+ VSPK + E+K
Sbjct: 109 EQQGFSCQIETSGTQEIHCTPQTWVTVSPKINMRGGLPVLAQALGRSDEIKHPAARQSDI 168
Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+++ +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 169 DELDALLATLHDTKQRVIALQPISQK--EAATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|90408082|ref|ZP_01216253.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3]
gi|90310839|gb|EAS38953.1| putative organic radical activating enzyme [Psychromonas sp. CNPT3]
Length = 225
Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 89/234 (38%), Gaps = 41/234 (17%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
Y + EIF T+QGEG H G A+F R GC++ C +CDT
Sbjct: 5 YKVNEIFQTIQGEGVHTGCAAIFIRLQGCDV-----------GCAWCDTKHTWSANENDK 53
Query: 57 ------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
+ D A+ I + E + ++TGGEP + PL L+
Sbjct: 54 VPLNLVTDLSNSSAQWADVSAEHILAEIKNLEYTAKLVIITGGEPCIFDLRPLTALLHAH 113
Query: 111 GFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKLV------FPQV 156
GF+ +ET+GT W+ VSPK K + E+K Q+
Sbjct: 114 GFQTQIETSGTYPILVDAKSWVTVSPKVNMRAKKEVLLSALQRADEIKHPVGTQKDIEQL 173
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + LQP+ T L + C WRLSVQ HK++ I
Sbjct: 174 DALLARLGDTHNKTICLQPISQK--ANATALCMRTCIAR-NWRLSVQLHKYLDI 224
>gi|308187939|ref|YP_003932070.1| hypothetical protein Pvag_2457 [Pantoea vagans C9-1]
gi|308058449|gb|ADO10621.1| Uncharacterized protein ygcF [Pantoea vagans C9-1]
Length = 223
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 69/240 (28%), Positives = 96/240 (40%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MFYPINEMFQTLQGEGYYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWEKRAD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L IE+Q T R+ V+TGGEP + PL
Sbjct: 50 RETSLGDILIKTVESDAWGDADASTLLRSIEQQGWT----ARHVVITGGEPAIYDLRPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQ 155
L + GF+ +ET+GT E W+ VSPK + E+K V Q
Sbjct: 106 TILEQHGFQCQIETSGTHEIHCSEQTWVTVSPKVNMRGGYDVLPQALSRADEIKHPVARQ 165
Query: 156 VNVSPEN-----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+V + +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDVDALDGLLAGIDDTKARIIALQPISRKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|300718116|ref|YP_003742919.1| Putative organic radical activating enzyme [Erwinia billingiae
Eb661]
gi|299063952|emb|CAX61072.1| Putative organic radical activating enzyme [Erwinia billingiae
Eb661]
Length = 223
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 89/236 (37%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG + G A+F R GC + C +CDT +
Sbjct: 1 MQYPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKLAD 49
Query: 62 GGRYNVDQLADLIE-------------EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
D L +E R+ V+TGGEP + PL L
Sbjct: 50 RETSLGDILTKTVETDAWGSANAAALLAVIANHGWTARHIVITGGEPCIHDLTPLTATLQ 109
Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLVFPQV---- 156
+ GF +ET+GT E W+ VSPK + + E+K +
Sbjct: 110 QHGFSCQIETSGTHEVLCSAETWVTVSPKVNMRGGYDVLNQALVRADEVKHPVARQRDVE 169
Query: 157 --NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ + T L I C ++ WRLS+QTHK++ I
Sbjct: 170 ALQALLATLNDDKPRIIALQPISQKD--DATKLCIETCIKH-NWRLSMQTHKYLNI 222
>gi|317049298|ref|YP_004116946.1| Radical SAM domain-containing protein [Pantoea sp. At-9b]
gi|316950915|gb|ADU70390.1| Radical SAM domain protein [Pantoea sp. At-9b]
Length = 223
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MYYPINEMFQTLQGEGFYTGVPALFIRLQGCPV-----------GCSWCDTKHTWEKLAD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L D I+ Q T R+ V+TGGEP + PL
Sbjct: 50 RETSLGDILVKTVESDAWGNADAAMLIDTIQRQGWT----ARHVVITGGEPAIYDLRPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQV 156
AL GF +ET+GT E W+ VSPK ++ E+K +V
Sbjct: 106 SALEAAGFACQIETSGTHEIRCSDSTWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARV 165
Query: 157 ------NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDVEALDALLAGLHDEKKRIIALQPIS--RGDAATKLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|329295553|ref|ZP_08252889.1| Radical SAM domain-containing protein [Plautia stali symbiont]
Length = 223
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 70/240 (29%), Positives = 98/240 (40%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG + G A+F R GC + C +CDT
Sbjct: 1 MFYPINEMFQTLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDTKHTWETRAD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + L + I+ Q T R+ V+TGGEP + PL
Sbjct: 50 LETSLGDILVKTVESDAWGSADAATLIETIQRQGWT----ARHLVITGGEPAIFDLRPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ- 155
+AL GF+ +ET+GT E W+ VSPK ++ E+K +
Sbjct: 106 EALETAGFQCQIETSGTHEVHCSAATWVTVSPKVNMRGGYDVLPQALQRADEIKHPVARE 165
Query: 156 --VNVSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
V G E+ +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 166 RDVEALDALLAGLQDEKKRIVALQPIS--RGEAATRLCIETCIVR-NWRLSMQTHKYLNI 222
>gi|262275962|ref|ZP_06053771.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP
101886]
gi|262219770|gb|EEY71086.1| queuosine Biosynthesis QueE Radical SAM [Grimontia hollisae CIP
101886]
Length = 220
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 49/238 (20%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
+Y++ EIF T+QGEG G +VF R GC + C +CDT
Sbjct: 1 MYNVNEIFETIQGEGTFTGIPSVFIRLQGCPV-----------GCPWCDTRQTWDTLPLD 49
Query: 57 -----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
+ R + + + ++ + ++ V+TGGEP + +PL
Sbjct: 50 QRDFGTIIAKNDESPLWARVSAEDILSHLQSR-----YTAKHIVITGGEPCMFDLMPLTS 104
Query: 106 ALNKRGFEIAVETNGTI-EPPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQV 156
L+ G+ +ET+GT W+ VSPK K+ E+K V +
Sbjct: 105 LLDAHGYRCQIETSGTYVVYATENTWVTVSPKINMRGKLPILKEALDRANEIKHPVGTES 164
Query: 157 NVSPEN----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ + ++ + +LQP+ T L I C WRLSVQTHK++ I
Sbjct: 165 DIEKLDELLKHVDLKGKEVALQPISQK--ARATALCIETCIAR-NWRLSVQTHKYLNI 219
>gi|261342207|ref|ZP_05970065.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316]
gi|288315541|gb|EFC54479.1| radical SAM domain protein [Enterobacter cancerogenus ATCC 35316]
Length = 223
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G N + L +I Q T R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAGNAEDLLAIIGRQGWT----ARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
+ L K G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 ELLEKNGYSCQIETSGTHEVRCSHTTWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRV 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDEKQRIIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|269138400|ref|YP_003295100.1| radical SAM domain protein [Edwardsiella tarda EIB202]
gi|267984060|gb|ACY83889.1| radical SAM domain protein [Edwardsiella tarda EIB202]
gi|304558427|gb|ADM41091.1| Queuosine Biosynthesis QueE Radical SAM [Edwardsiella tarda FL6-60]
Length = 223
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 97/237 (40%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF +LQGEG + G AVF R GC + C +CD+ Q +
Sbjct: 1 MQYPINEIFQSLQGEGFYTGVPAVFIRLQGCPV-----------GCSWCDSQHTWHQRPE 49
Query: 62 GGRYNVDQLADLIEE--------------QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ ++ Q+ + E + R+ V+TGGEP + +PL AL
Sbjct: 50 -CQADLAQIVEKTAESEAWASADAAALVALLRQRGYQARHVVITGGEPCMHDLLPLTTAL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQV--- 156
+ G+ +ET+GT W+ VSPK G ++ E+K +
Sbjct: 109 EQGGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMTVLTDALRRANEIKHPVARARDI 168
Query: 157 ---NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ G +LQP+ EE T L I C WRLS+QTHK++ I
Sbjct: 169 EALDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQTHKYLNI 222
>gi|238897449|ref|YP_002923126.1| hypothetical protein HDEF_0210 [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465204|gb|ACQ66978.1| conserved hypothetical protein, Radical_SAM domain protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 223
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 90/236 (38%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
LY I EIF TLQGEG G A+F R GC + C +CDT + +
Sbjct: 1 MLYPINEIFQTLQGEGHFMGTPAIFIRLQGCPV-----------GCSWCDTKHTWEKKNE 49
Query: 62 -------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + + V+TGGEP L PL Q L
Sbjct: 50 QQVDLFSILQKKTANDFWSHSGEQNLLAVIRAQGYQASHVVITGGEPCLYDLTPLTQLLE 109
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQ----- 155
+ G+ +ET+GT W+ VSPK ++ ELK V +
Sbjct: 110 QEGYFCQIETSGTHLVHCTPSCWVTVSPKINMRGGFKIQHQALERADELKHVVARKSDIE 169
Query: 156 -VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ N SLQP+ T L I C + WRLSVQ HK++GI
Sbjct: 170 TLDALIGNLKDRKKRIISLQPVSQKKS--ATQLCIDTCIER-NWRLSVQMHKYLGI 222
>gi|330445748|ref|ZP_08309400.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328489939|dbj|GAA03897.1| conserved protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 222
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y I E+F T+QGEG G A+F R C + C +CDT
Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+++Q+ + + I + ++ V+TGGEP + PL +AL
Sbjct: 49 DLASLEQIMAKTEDSPLWTQLDANGVVQLLIDQKYTAKHVVITGGEPCIYDLRPLTEALE 108
Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLV------FP 154
GF +ET+GT E + W+ VSPK K+ E+K
Sbjct: 109 AAGFNCQIETSGTSEIQASNNTWVTVSPKINMKAKLPVLASALERANEIKHPVGTSKDIE 168
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ E +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 QLDALLEGKNLKSDITIALQPISQK--PRATELCIETCIAR-NWRLSIQTHKYLAI 221
>gi|281426145|ref|ZP_06257058.1| radical SAM domain protein [Prevotella oris F0302]
gi|281399721|gb|EFB30552.1| radical SAM domain protein [Prevotella oris F0302]
Length = 190
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 85/213 (39%), Positives = 111/213 (52%), Gaps = 28/213 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K Y + EIF +LQGEG + GR AVF RFSGCNL C FCDTDF
Sbjct: 3 KTYKVNEIFYSLQGEGRNTGRAAVFIRFSGCNLK-----------CSFCDTDFKLYH--- 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + D + + G + VLTGGEP LQVD LI AL+ GF +A+E+NGT
Sbjct: 49 --EMTAEAIVDAVRDWKTAG-----FVVLTGGEPTLQVDGKLIDALHAEGFYVAMESNGT 101
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD---G 178
PP +DW+ +SPK + + ELK +F P + +G + + + LQP D
Sbjct: 102 NVPPPNLDWLTISPKEH--VVVTECNELKCIFDGQK--PVDDLGIEADYYYLQPCDVGND 157
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
T I Y +PKWRLS+QTHK IG +
Sbjct: 158 VQNRTITQACIRYIASHPKWRLSLQTHKMIGFQ 190
>gi|22124729|ref|NP_668152.1| hypothetical protein y0816 [Yersinia pestis KIM 10]
gi|45440171|ref|NP_991710.1| hypothetical protein YP_0312 [Yersinia pestis biovar Microtus str.
91001]
gi|51595107|ref|YP_069298.1| coenzyme PQQ synthesis protein [Yersinia pseudotuberculosis IP
32953]
gi|108808863|ref|YP_652779.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua]
gi|108810883|ref|YP_646650.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516]
gi|145600242|ref|YP_001164318.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F]
gi|153949574|ref|YP_001402270.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
IP 31758]
gi|153997583|ref|ZP_02022683.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125]
gi|162421287|ref|YP_001605539.1| radical SAM domain-containing protein [Yersinia pestis Angola]
gi|165925701|ref|ZP_02221533.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936653|ref|ZP_02225220.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|166009994|ref|ZP_02230892.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166214107|ref|ZP_02240142.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398407|ref|ZP_02303931.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167420659|ref|ZP_02312412.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423406|ref|ZP_02315159.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470705|ref|ZP_02335409.1| radical SAM domain protein [Yersinia pestis FV-1]
gi|170025659|ref|YP_001722164.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
YPIII]
gi|186894119|ref|YP_001871231.1| radical SAM domain-containing protein [Yersinia pseudotuberculosis
PB1/+]
gi|218930391|ref|YP_002348266.1| hypothetical protein YPO3374 [Yersinia pestis CO92]
gi|229839004|ref|ZP_04459163.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896484|ref|ZP_04511652.1| conserved protein [Yersinia pestis Pestoides A]
gi|229899572|ref|ZP_04514713.1| conserved protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229901094|ref|ZP_04516217.1| conserved protein [Yersinia pestis Nepal516]
gi|270489273|ref|ZP_06206347.1| radical SAM domain protein [Yersinia pestis KIM D27]
gi|294505081|ref|YP_003569143.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003]
gi|21957546|gb|AAM84403.1|AE013684_5 hypothetical protein y0816 [Yersinia pestis KIM 10]
gi|45435027|gb|AAS60587.1| Organic radical activating enzymes [Yersinia pestis biovar Microtus
str. 91001]
gi|51588389|emb|CAH19997.1| putative coenzyme PQQ synthesis protein, nitrogenase
iron-molybdenum domain [Yersinia pseudotuberculosis IP
32953]
gi|108774531|gb|ABG17050.1| hypothetical protein YPN_0718 [Yersinia pestis Nepal516]
gi|108780776|gb|ABG14834.1| hypothetical protein YPA_2872 [Yersinia pestis Antiqua]
gi|115349002|emb|CAL21963.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211938|gb|ABP41345.1| hypothetical protein YPDSF_2985 [Yersinia pestis Pestoides F]
gi|149289220|gb|EDM39300.1| hypothetical protein YPE_4042 [Yersinia pestis CA88-4125]
gi|152961069|gb|ABS48530.1| radical SAM domain protein [Yersinia pseudotuberculosis IP 31758]
gi|162354102|gb|ABX88050.1| radical SAM domain protein [Yersinia pestis Angola]
gi|165915302|gb|EDR33912.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
IP275]
gi|165922313|gb|EDR39490.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990901|gb|EDR43202.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204738|gb|EDR49218.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166961465|gb|EDR57486.1| radical SAM domain protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050911|gb|EDR62319.1| radical SAM domain protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057576|gb|EDR67322.1| radical SAM domain protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752193|gb|ACA69711.1| Radical SAM domain protein [Yersinia pseudotuberculosis YPIII]
gi|186697145|gb|ACC87774.1| Radical SAM domain protein [Yersinia pseudotuberculosis PB1/+]
gi|229681819|gb|EEO77912.1| conserved protein [Yersinia pestis Nepal516]
gi|229687064|gb|EEO79139.1| conserved protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229695370|gb|EEO85417.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700558|gb|EEO88589.1| conserved protein [Yersinia pestis Pestoides A]
gi|262363141|gb|ACY59862.1| hypothetical protein YPD4_2958 [Yersinia pestis D106004]
gi|262367071|gb|ACY63628.1| hypothetical protein YPD8_2956 [Yersinia pestis D182038]
gi|270337777|gb|EFA48554.1| radical SAM domain protein [Yersinia pestis KIM D27]
gi|294355540|gb|ADE65881.1| hypothetical protein YPZ3_2972 [Yersinia pestis Z176003]
gi|320016570|gb|ADW00142.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 223
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
LY I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + QL DL +Q R+ V+TGGEP + PL
Sbjct: 50 REVDMQRIMVKTAESDAWGSASEQQLLDLFAQQG----YTARHVVITGGEPSIYDLQPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L + GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 SLLEQAGFSCQIETSGTHEVRCSAQTWVTVSPKVNMRGGLKILSQALQRADEIKHPVGRL 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALEALLATLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222
>gi|300724656|ref|YP_003713981.1| putative coenzyme PQQ synthesis protein with nitrogenase
iron-molybdenum domain [Xenorhabdus nematophila ATCC
19061]
gi|297631198|emb|CBJ91893.1| putative coenzyme PQQ synthesis protein with nitrogenase
iron-molybdenum domain [Xenorhabdus nematophila ATCC
19061]
Length = 223
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 93/236 (39%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+Y I EIF TLQGEG G +VF R GC + C +CDT +
Sbjct: 1 MIYPINEIFQTLQGEGVFTGVPSVFVRLQGCPV-----------GCSWCDTKHTWEKDAD 49
Query: 62 GGRYNVDQLADL-------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + L + + R+ V+TGGEP L PL + L
Sbjct: 50 KQQVMENILLKTRDSDLWGVATAKQLINIFTRQGYSARHIVITGGEPCLYDLRPLTETLE 109
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKA-------GCDLKIKGGQELKLVF---PQVN 157
+ G++ +ET+GT W+ VSPK +K E+K +
Sbjct: 110 REGYQCQIETSGTHSIQCSDKTWVTVSPKVKMRGGYKVLPEAMKRADEIKHPVGRERDIE 169
Query: 158 VSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E + D + +LQP+ EE T L I C WR S+QTHK++ I
Sbjct: 170 ALDELLVMLDGKSSPVIALQPISQK--EEATRLCIETCIAR-NWRFSMQTHKYLHI 222
>gi|325103801|ref|YP_004273455.1| Radical SAM domain protein [Pedobacter saltans DSM 12145]
gi|324972649|gb|ADY51633.1| Radical SAM domain protein [Pedobacter saltans DSM 12145]
Length = 207
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F T+QGEG + G+ A F R GC++ C +CD +
Sbjct: 10 SMLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWD 54
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + ++E + G+ V+TGGEPLL L L ++G +ET+G
Sbjct: 55 AELHPLTSADKIVEN---AEKYPGKAVVITGGEPLLYNLDYLTAKLKEKGILTFIETSGA 111
Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGF----DFERFSLQ 174
DW+C+SP K+ + ELK++ + D + LQ
Sbjct: 112 YPISGSWDWVCLSPKKFKSPSPNIAQHADELKIIVFNKSDFEWAEAHARTVGDKCKLYLQ 171
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + ++ L I Y +NPKW +S+QTHK++ I
Sbjct: 172 P-EWSKSQDMLPLIIEYVKENPKWEISLQTHKYLNI 206
>gi|33866959|ref|NP_898518.1| organic radical activating protein [Synechococcus sp. WH 8102]
gi|33639560|emb|CAE08944.1| possible organic radical activating enzyme [Synechococcus sp. WH
8102]
Length = 206
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 89/217 (41%), Gaps = 25/217 (11%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ E F +LQGEG H+GR A F R +GCN+ C +CDT
Sbjct: 7 TLPVVETFHSLQGEGHHSGRSAFFIRLAGCNV-----------GCPWCDTKH----SWPV 51
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGT 121
+ L L + + V+TGGEPL L AL + + +ET+G
Sbjct: 52 NTHPQRSLRALAADVEQAERNGAAFTVITGGEPLQHNLDGLASALREASSHPLHLETSGV 111
Query: 122 IEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVNVSPENYIGFDF----ERFSLQ 174
DWI +SPK + + ELK+V + LQ
Sbjct: 112 DGLSGDPDWITLSPKPHRPPRQELLSHCDELKVVIHTADDLLFAESMAAAVSKQTVLLLQ 171
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
P G E LAI + P+WRLS+QTHK++G+R
Sbjct: 172 P--GWDSSEGQRLAIDHVQNQPRWRLSLQTHKWLGVR 206
>gi|145298762|ref|YP_001141603.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851534|gb|ABO89855.1| radical activating enzyme [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 250
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I EIF T+QGEG G A+F R GC + C +CDT I
Sbjct: 28 MHYPINEIFQTIQGEGIFTGLPAIFVRLQGCPV-----------GCPWCDTRHTWIVDPA 76
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ + + DQ+ ++ + R+ V+TGGEP L L
Sbjct: 77 REVGVQAVLDCSNESDSWSKMSTDQILASFQQLG----YQARHVVITGGEPCLYDLHELS 132
Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGCD-------LKIKGGQELKL----- 151
L G+++ +ET+GT E W+ VSPK G ++ E+K
Sbjct: 133 TVLLAAGYQVQIETSGTSEIKTHDSTWVTVSPKIGMKGGLPVLVSALERANEIKHPVATE 192
Query: 152 -VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+++ +LQP+ T LA++ C WRLS+QTHK++ I
Sbjct: 193 RHIEELDALLATATLRPDVEIALQPISQK--PRATQLAMAVCIAR-NWRLSIQTHKYLDI 249
>gi|127512989|ref|YP_001094186.1| radical SAM domain-containing protein [Shewanella loihica PV-4]
gi|126638284|gb|ABO23927.1| Radical SAM domain protein [Shewanella loihica PV-4]
Length = 222
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 42/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E+F T+QGEG + G A+F R GC + C +CDT +
Sbjct: 1 MKYPVNEVFETIQGEGVYTGVPAIFVRLQGCPV-----------GCSWCDTKHTWETLAE 49
Query: 62 G--------------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
GR+ +L+ + G ++ V+TGGEP + + L QA
Sbjct: 50 NRVSSEQVIQVDGAIGRWAELDARELLMHFKVQG-FSAKHVVITGGEPCIYDLIALTQAF 108
Query: 108 NKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLVFPQVNVS 159
G + +ET+GT + W+ VSPK + ++ E+K + +
Sbjct: 109 ADAGMQCQIETSGTFDVLVDPRAWVTVSPKINMKGGYKVLEQALERADEIKHPVAKASHI 168
Query: 160 PENYIGFD-----FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E + LQP+ T LA+ C + WRLS+QTHK++ I
Sbjct: 169 EELDELLKGIDTLGKTICLQPISQK--PRATELAMKVCIER-NWRLSIQTHKYLNI 221
>gi|308050954|ref|YP_003914520.1| hypothetical protein Fbal_3247 [Ferrimonas balearica DSM 9799]
gi|307633144|gb|ADN77446.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
Length = 224
Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 88/232 (37%), Gaps = 39/232 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y + E+F T+QGEG H G A+F R GC + C +CDT
Sbjct: 6 YPVNELFETIQGEGVHTGVPAIFLRLQGCPV-----------GCSWCDTKHTWDLQENRK 54
Query: 64 RYNVDQLADLIEEQWI------------TGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
D L E + V+TGGEP + PL + G
Sbjct: 55 VMLSDVLVKTEESVMWCSVGPREILDLCMSRYTATHLVITGGEPCMYDLQPLCEVFEAEG 114
Query: 112 FEIAVETNGTIE-PPQGIDWICVSPK-------AGCDLKIKGGQELKLVFPQVNVSPENY 163
+ I VET+GT W+ VSPK + I E+K V +
Sbjct: 115 YSIQVETSGTYPVMVSDSAWVTVSPKIKMRGGLSVLASAIDRADEIKHPVATVKDIEQLD 174
Query: 164 IGF-----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ + T LAI C + WRLSVQTHK++GI
Sbjct: 175 ELLTGSAGADAKVALQPISQK--PKATELAIRTCIKR-NWRLSVQTHKYLGI 223
>gi|326800682|ref|YP_004318501.1| radical SAM protein [Sphingobacterium sp. 21]
gi|326551446|gb|ADZ79831.1| Radical SAM domain protein [Sphingobacterium sp. 21]
Length = 230
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
L + E F T+QGEG H G+ A F R GC++ C +CD +
Sbjct: 33 TLLPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWD 77
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + + D+I + V+TGGEPL+ L + L G + +ET+G
Sbjct: 78 AELHPLTKADDIIRN---AARYPAKTVVITGGEPLIYNLDYLTRGLQDAGIKTFIETSGA 134
Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFE---RFSLQ 174
DW+C+SP KA I+ ELK +VF + + + LQ
Sbjct: 135 YPLSGHWDWVCLSPKKFKAPLPDVIEAAGELKVIVFNKSDFEWAERYAAQIPVGRKLYLQ 194
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + + T L I Y +NPKW +S+QTHK++ I
Sbjct: 195 P-EWSKAAQMTPLIIDYVKENPKWEISLQTHKYLNI 229
>gi|89073954|ref|ZP_01160460.1| putative organic radical activating enzyme [Photobacterium sp.
SKA34]
gi|89050282|gb|EAR55786.1| putative organic radical activating enzyme [Photobacterium sp.
SKA34]
Length = 222
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y I E+F T+QGEG G A+F R C + C +CDT
Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
N+DQ+ + + + ++ V+TGGEP + PL QAL
Sbjct: 49 DLANLDQIMAKTGDSPLWTNLDANGVVQLLQDQKYTAKHVVITGGEPCIYDLRPLTQALE 108
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
GF +ET+GT + W+ VSPK K+ E+K
Sbjct: 109 DAGFNCQIETSGTSDIQTSENTWVTVSPKINMKAKLPVLVSSLARANEIKHPVGTSKDIE 168
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ + +LQP+ T L I C Q WRLS+QTHK++ I
Sbjct: 169 QLDALIDGVTLKPDVTIALQPISQK--PRATELCIETCIQR-NWRLSIQTHKYLAI 221
>gi|146312870|ref|YP_001177944.1| radical SAM domain-containing protein [Enterobacter sp. 638]
gi|145319746|gb|ABP61893.1| Radical SAM domain protein [Enterobacter sp. 638]
Length = 223
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q T R+ V+TGGEP + + L
Sbjct: 50 REVSLFSILAKTKESDKWGAGSAEDLLAIIGRQGWT----ARHVVITGGEPCIHDLMSLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGC-------DLKIKGGQELKLV---- 152
L K G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 DLLEKNGYSCQIETSGTHEVRCSHTAWVTVSPKVNMRGGYDVLSQALERADEIKHPVGRM 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALDELLATLTDEKQRIIALQPISQKD--DATRLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|238797157|ref|ZP_04640659.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC
43969]
gi|238719004|gb|EEQ10818.1| hypothetical protein ymoll0001_8670 [Yersinia mollaretii ATCC
43969]
Length = 229
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 92/241 (38%), Gaps = 49/241 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
+ LY I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 6 LMLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEA 54
Query: 58 --------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
+ G QL D+ +Q R+ V+TGGEP + PL
Sbjct: 55 DREVDMQRIMVKTAESDAWGSATEQQLLDIFSQQG----YTARHVVITGGEPSIYDLRPL 110
Query: 104 IQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLV--- 152
L + G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 111 TSLLEQGGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGR 170
Query: 153 ---FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ +LQP+ E+ T L I C WRLS+QTHK++
Sbjct: 171 LRDIEALEALLATLHDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLN 227
Query: 210 I 210
I
Sbjct: 228 I 228
>gi|59713678|ref|YP_206453.1| hypothetical protein VF_A0495 [Vibrio fischeri ES114]
gi|59481926|gb|AAW87565.1| conserved protein [Vibrio fischeri ES114]
Length = 226
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 91/236 (38%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L+ I E+F T+QGEG G ++F R GC + C +CDT
Sbjct: 5 LFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTW-DVELS 52
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ ++ + I E ++ V+TGGEP + L Q L
Sbjct: 53 DKTDLQTILAKTEDTPSWTELSSTQIIEMLENQGYTAKHMVITGGEPCMYDLTSLTQELE 112
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
+ G+ +ET+GT W+ VSPK K+ E+K
Sbjct: 113 QHGYRCQIETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTTKDIE 172
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ E + +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 173 QLDALLEGVELLEDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 225
>gi|221135470|ref|ZP_03561773.1| organic radical activating protein [Glaciecola sp. HTCC2999]
Length = 227
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 65/235 (27%), Positives = 95/235 (40%), Gaps = 43/235 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
Y I EIF ++QGEG + G ++F R GC + C +CDT
Sbjct: 7 YPINEIFESIQGEGSYTGVPSIFIRLQGCPV-----------GCPWCDTQHTWKVDTDDQ 55
Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
+ + + + L+ E I G ++ V+TGGEP + VPL + L
Sbjct: 56 IPVVQLREKSADAPTHALMNVTALLHEYEIRG-YLAKHVVITGGEPAMHDLVPLTEVLLS 114
Query: 110 RGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPE 161
+GF + +ET+GT ++ VSPK K E+K E
Sbjct: 115 KGFSVQIETSGTFALRCADDVYVTVSPKIDMPGKYPILPEVMARANEIKHAVAMQKHVDE 174
Query: 162 NYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + LQP+ T LA+ C + WRLS+QTHKFIGI
Sbjct: 175 LKLLLERAPIQTNTLIYLQPISQ--QARATQLAVETCIK-ENWRLSLQTHKFIGI 226
>gi|261210910|ref|ZP_05925200.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341]
gi|260839885|gb|EEX66485.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC341]
Length = 222
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
+Y I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWESLDAD 49
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + D+++ G + ++ V+TGGEP + L QA
Sbjct: 50 QTSFSQILLKTSDAPTWCHASAQDVVQRYQTQG-YQAKHIVITGGEPCIYDLTELTQAFE 108
Query: 109 KRGFEIAVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 109 SIGCHCQIETSGTYEVRATPLTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 168
Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 NLDELLVRAKVTEKTVVALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221
>gi|315607677|ref|ZP_07882671.1| GntS protein [Prevotella buccae ATCC 33574]
gi|315250613|gb|EFU30608.1| GntS protein [Prevotella buccae ATCC 33574]
Length = 210
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 89/226 (39%), Positives = 113/226 (50%), Gaps = 35/226 (15%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK Y I EIF +LQGEG + GR AVF RFSGCNL C FCDTDF
Sbjct: 5 MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAY--- 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRY-----------CVLTGGEPLLQVDVPLIQALNK 109
D++ + ++ + VLTGGEP LQVD LI AL+
Sbjct: 51 --REMTSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHH 108
Query: 110 RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
GF E+A+E+NGT EPP +DW+ VSPK + ELK +F + + + I DF
Sbjct: 109 AGFPEVAMESNGTKEPPPNLDWLTVSPKEQVSVN--RCNELKCLFDESGRADDCGIRADF 166
Query: 169 ERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ LQP D E Y Q+PKW+LS+QTHK IG +
Sbjct: 167 --YYLQPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 210
>gi|291086244|ref|ZP_06355196.2| radical SAM domain protein [Citrobacter youngae ATCC 29220]
gi|291068637|gb|EFE06746.1| radical SAM domain protein [Citrobacter youngae ATCC 29220]
Length = 242
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 20 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLED 68
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I+ Q R+ V+TGGEP + +PL
Sbjct: 69 REVSLYSILAKTKESDKWGAASSEDLLAVIQRQG----YTARHVVITGGEPCIHDLMPLT 124
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L K GF +ET+GT E W+ VSPK ++ E+K
Sbjct: 125 DLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 184
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 185 RDIEALDELLATLSDDKPRIIALQPISQK--EDATRLCIDTCIA-CNWRLSMQTHKYLNI 241
>gi|88859840|ref|ZP_01134479.1| queC protein [Pseudoalteromonas tunicata D2]
gi|88817834|gb|EAR27650.1| queC protein [Pseudoalteromonas tunicata D2]
Length = 221
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 90/234 (38%), Gaps = 40/234 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
+Y I EIF T+QGE G ++F R GC + C +CDT
Sbjct: 1 MYKINEIFETIQGEASFTGMPSIFVRLQGCPV-----------GCAWCDTKQTWETSDTY 49
Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
++ D + ++ + ++ V+TGGEP + VPL + L+
Sbjct: 50 KVDLQKTVEKKADSELWADVTVAQLLALFVEKGYQAKHIVITGGEPCMYDLVPLCEGLHA 109
Query: 110 RGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPE 161
G+ VET+GT E W+ VSPK ++ E+K E
Sbjct: 110 AGYGTQVETSGTFEIKVPAETWVTVSPKINMRGGYAVLKSAMQRANEIKHPIAMQRHVDE 169
Query: 162 NYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
LQP+ + T LAI C WRLSVQ HK++GI
Sbjct: 170 LEQLMAECGVTPKLIYLQPISQK--AKATQLAIEVCKAK-NWRLSVQVHKYLGI 220
>gi|90579565|ref|ZP_01235374.1| putative organic radical activating enzyme [Vibrio angustum S14]
gi|90439139|gb|EAS64321.1| putative organic radical activating enzyme [Vibrio angustum S14]
Length = 222
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y I E+F T+QGEG G A+F R C + C +CDT
Sbjct: 1 MYKINEVFETIQGEGVFTGVPAIFVRLQVCPV-----------GCSWCDTKQTWT-AEPQ 48
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++DQ+ + + + ++ V+TGGEP + PL QAL
Sbjct: 49 DLVSLDQIMAKTGDSPLWTNLDANGVVQLLQDQKYTAKHVVITGGEPCIYDLRPLTQALE 108
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
+ GF +ET+GT E W+ VSPK K+ E+K
Sbjct: 109 EAGFNCQIETSGTSEIQTSDNTWVTVSPKINMKAKLPVLASSLARANEIKHPVGTSKDIE 168
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ + +LQP+ T L I C Q WRLS+QTHK++ I
Sbjct: 169 QLDALIDGVTLKPDVTIALQPISQKT--RATELCIETCIQR-NWRLSIQTHKYLAI 221
>gi|153212696|ref|ZP_01948353.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124116346|gb|EAY35166.1| conserved hypothetical protein [Vibrio cholerae 1587]
Length = 245
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
LY I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + ++++ + ++ V+TGGEP + L QA
Sbjct: 73 QTSFSQILLKTSDAPTWCQASAQEVVQRY-QAQGYQAKHIVITGGEPCIYDLTELTQAFE 131
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 132 AMGCRCQIETSGTYEVYATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191
Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244
>gi|197337552|ref|YP_002158091.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11]
gi|197314804|gb|ACH64253.1| queuosine biosynthesis protein QueE [Vibrio fischeri MJ11]
Length = 226
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 91/236 (38%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L+ I E+F T+QGEG G ++F R GC + C +CDT
Sbjct: 5 LFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTW-DVELS 52
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ ++ + I E ++ V+TGGEP + L Q L
Sbjct: 53 DKTDLQTILAKTEDTPSWTELSSTQIIEMLENQGYTAKHMVITGGEPCMYDLTSLTQELE 112
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
+ G+ +ET+GT W+ VSPK K+ E+K
Sbjct: 113 QHGYRCQIETSGTYPILASENTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTTKDIE 172
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ E + +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 173 QLDALLEGVELLEDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 225
>gi|260768533|ref|ZP_05877467.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP
102972]
gi|260616563|gb|EEX41748.1| queuosine Biosynthesis QueE Radical SAM [Vibrio furnissii CIP
102972]
Length = 246
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 24 TLYKVNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCAWCDTKQTW-DAAP 71
Query: 62 GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ D++ A I E++ ++ V+TGGEP + VPL QA
Sbjct: 72 ADERSFDEILVKTEDNPNWCSASAQQIIERYRAQGYTAKHIVITGGEPCIYDLVPLTQAF 131
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
G +ET+GT W+ VSPK K+ E+K V + ++
Sbjct: 132 EAIGCRCQIETSGTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDI 191
Query: 159 SPENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 192 DNLDQLLARAGVPATTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245
>gi|288924671|ref|ZP_06418608.1| radical SAM [Prevotella buccae D17]
gi|288338458|gb|EFC76807.1| radical SAM [Prevotella buccae D17]
Length = 206
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 89/226 (39%), Positives = 113/226 (50%), Gaps = 35/226 (15%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK Y I EIF +LQGEG + GR AVF RFSGCNL C FCDTDF
Sbjct: 1 MKRYRINEIFYSLQGEGRNTGRAAVFVRFSGCNL-----------ACSFCDTDFRAY--- 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRY-----------CVLTGGEPLLQVDVPLIQALNK 109
D++ + ++ + VLTGGEP LQVD LI AL+
Sbjct: 47 --REMTSDEVVNTVKGILPSFVDNRSGEGVGTARSSVLVVLTGGEPTLQVDFDLIDALHH 104
Query: 110 RGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
GF E+A+E+NGT EPP +DW+ VSPK + ELK +F + + + I DF
Sbjct: 105 AGFPEVAMESNGTKEPPPNLDWLTVSPKEQVSVN--RCNELKCLFDESGRADDCGIRADF 162
Query: 169 ERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ LQP D E Y Q+PKW+LS+QTHK IG +
Sbjct: 163 --YYLQPCDTGDPVRNAEIIAACTEYIKQHPKWQLSLQTHKLIGFK 206
>gi|85711961|ref|ZP_01043015.1| Organic radical activating enzyme [Idiomarina baltica OS145]
gi|85694147|gb|EAQ32091.1| Organic radical activating enzyme [Idiomarina baltica OS145]
Length = 223
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 87/237 (36%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I EIF TLQGEG G ++F R GC + C +CDT
Sbjct: 1 MTYRINEIFETLQGEGTFTGVPSIFIRLQGCPV-----------GCPWCDTQHTWDVKQE 49
Query: 58 ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + AD++ E ++ V+TGGEP + L + L
Sbjct: 50 DQVSVATMMAKSEATSEWAEMSSADIV-ELIKQRGYRAKHVVITGGEPAMYDLRELGEVL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVS 159
+G + +ET+GT E W+ VSPK + E+K
Sbjct: 109 EAQGMRLQIETSGTYELLITAGTWVTVSPKLDMPGGYLVRSDCLSRADEIKHPIAMQKHI 168
Query: 160 PENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ LQP+ T LA+ C + WRLSVQ HK++ I
Sbjct: 169 DALDRLLQGQKLKSDVVICLQPISQ--RPRATELAMKTCIER-NWRLSVQMHKYLNI 222
>gi|153825305|ref|ZP_01977972.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|183179363|ref|ZP_02957574.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|149741133|gb|EDM55192.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|183012774|gb|EDT88074.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 245
Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
LY I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + ++++ + ++ V+TGGEP + L QA
Sbjct: 73 QTSFSQILLKTSDAPTWCQASAQEVVQRY-QAQGYQAKHIVITGGEPCIYDLTELTQAFE 131
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 132 AMGCRCQIETSGTYEVRATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191
Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244
>gi|126662368|ref|ZP_01733367.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38]
gi|126625747|gb|EAZ96436.1| hypothetical protein FBBAL38_03415 [Flavobacteria bacterium BAL38]
Length = 210
Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 88/215 (40%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ ++ +K V+TGGEPL L L ++ + +ET+G
Sbjct: 60 ELHPPTNTDIIV----SNAKKYADTVVVTGGEPLTWDMTLLTSKLKEQNLRVHIETSGAY 115
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ---ELKLVF---PQVNVSPENYIGFDFERF-SLQP 175
E DW C+SPK ELK++ + E + LQP
Sbjct: 116 EVTGTWDWFCLSPKKNKLPVQSAYDIANELKVIIYNKHDFIFAEEQAAKVNPNAILFLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ EE T L + Y NPKWR+S+QTHK++ I
Sbjct: 176 -EWSKKEEMTPLIVDYVMNNPKWRVSLQTHKYLNI 209
>gi|328950182|ref|YP_004367517.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
gi|328450506|gb|AEB11407.1| Radical SAM domain protein [Marinithermus hydrothermalis DSM 14884]
Length = 199
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ Y + E F ++QGEG G A F R +GC++ C FCDT
Sbjct: 1 MRKGYPVVETFHSVQGEGHWTGTSAFFIRLAGCDV-----------GCWFCDTKESW-DM 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++ +VD L + V+TGGEPL+ PL +AL G +ET+
Sbjct: 49 SQHPWRSVDALVAEAQAASPA------IVVVTGGEPLMHDLTPLSRALRAAGLRAHLETS 102
Query: 120 GTIEPPQGIDWICVSPK---AGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFERF---S 172
G DW+ +SPK ELK +V Q +++
Sbjct: 103 GAHPFSGAWDWVTLSPKKFRPPHPSVYPHVHELKVVVVNQSDLAWAETHAARVPPTALKY 162
Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP E++ L + Y Q+P+WR+S+QTHK +G+R
Sbjct: 163 LQPEWS--TEKSRQLILEYVLQHPEWRVSLQTHKVLGVR 199
>gi|297578950|ref|ZP_06940878.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297536544|gb|EFH75377.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 245
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
LY I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + ++++ + ++ V+TGGEP + L QA
Sbjct: 73 QTSFSQILLKTSDAPTWCQATAQEVVQRY-QAQGYQAKHIVITGGEPCIYDLTELTQAFE 131
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 132 AIGCRCQIETSGTYEVCATDNTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191
Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244
>gi|121587998|ref|ZP_01677750.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153828785|ref|ZP_01981452.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|229515737|ref|ZP_04405196.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21]
gi|229521471|ref|ZP_04410890.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM
11079-80]
gi|229529559|ref|ZP_04418949.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)]
gi|121547739|gb|EAX57830.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|148875738|gb|EDL73873.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|229333333|gb|EEN98819.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae 12129(1)]
gi|229341569|gb|EEO06572.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TM
11079-80]
gi|229347506|gb|EEO12466.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae TMA 21]
Length = 245
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
LY I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + ++++ + ++ V+TGGEP + L QA
Sbjct: 73 QTSFSQILLKTSDAPTWCQASAQEVVQRY-QAQGYQAKHIVITGGEPCIYDLTELTQAFE 131
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 132 AMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191
Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244
>gi|56750231|ref|YP_170932.1| hypothetical protein syc0222_c [Synechococcus elongatus PCC 6301]
gi|81300141|ref|YP_400349.1| hypothetical protein Synpcc7942_1332 [Synechococcus elongatus PCC
7942]
gi|56685190|dbj|BAD78412.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169022|gb|ABB57362.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 206
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I E F ++QGEG G A F R +GC++ C +CDT Q
Sbjct: 11 TLPIVETFHSVQGEGAWMGCSAFFIRLAGCDV-----------GCPWCDTK----QSWPR 55
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
R+ +ADL+E + ++ V+TGGEPLL L AL +G +ET+G+
Sbjct: 56 DRHPEVAIADLVEAAVAA---QPQFVVITGGEPLLHDLTELTNALRSQGLRCHLETSGSA 112
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175
P DW+ +SP KA ELK+V + + + I LQP
Sbjct: 113 SPSGSFDWVTLSPKPFKAVVAANYNWANELKVVIQTDADFDFAEQEAIAVPETTLKLLQP 172
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E+ + ++Y Q+P+WR+S+QTHKF+G+R
Sbjct: 173 EWNS--PESCDRVVNYVRQHPRWRVSLQTHKFLGVR 206
>gi|229523533|ref|ZP_04412938.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv.
albensis VL426]
gi|254225344|ref|ZP_04918956.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|125622185|gb|EAZ50507.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|229337114|gb|EEO02131.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae bv.
albensis VL426]
Length = 245
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
LY I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + + ++++ + ++ V+TGGEP + L QA
Sbjct: 73 QTSFSQILLKTSDAPTWCQATAQEVVQRY-QAQGYQAKHIVITGGEPCIYDLTELTQAFE 131
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 132 AMGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDID 191
Query: 160 PENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 192 NLDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244
>gi|218259962|ref|ZP_03475458.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii
DSM 18315]
gi|218224823|gb|EEC97473.1| hypothetical protein PRABACTJOHN_01119 [Parabacteroides johnsonii
DSM 18315]
Length = 180
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 77/208 (37%), Positives = 102/208 (49%), Gaps = 29/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLK-----------CSFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + I +LTGGEP L +D I L+ G I +ETNGT
Sbjct: 45 ILMSDEDILQAISA------FPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTN 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+GIDW+ SPK G L++ E+K+V+ +++ Y G + LQP
Sbjct: 99 PLPEGIDWVTCSPK-GFPLRLAHIDEVKVVYTGQDLT--EYAGLEATWHFLQPCSC---- 151
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + Y +P+WRLS+QTHK I I
Sbjct: 152 LNTKEVVEYILHHPQWRLSLQTHKLIDI 179
>gi|315180245|gb|ADT87159.1| Organic radical activating enzyme [Vibrio furnissii NCTC 11218]
Length = 246
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 24 TLYKVNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCAWCDTKQTW-DAAP 71
Query: 62 GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ D++ A I E++ ++ V+TGGEP + VPL QA
Sbjct: 72 ADERSFDEILVKTEDNPNWCSASAQQIIERYRAQGYTAKHIVITGGEPCIYDLVPLTQAF 131
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
G +ET+GT W+ VSPK K+ E+K V + ++
Sbjct: 132 EAIGCRCQIETSGTFAVQATENTWVTVSPKVAMKGKLPVVDVALQRANEIKHPVATEKDI 191
Query: 159 SPENYIGFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 192 DNLDQLLARAGVPETTVVALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 245
>gi|300727783|ref|ZP_07061165.1| organic radical activating enzyme [Prevotella bryantii B14]
gi|299774936|gb|EFI71546.1| organic radical activating enzyme [Prevotella bryantii B14]
Length = 196
Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 79/216 (36%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H GR A+F RFSGCNL C FCDTDF
Sbjct: 1 MKKINEIFYSLQGEGRHTGRAAIFIRFSGCNLK-----------CSFCDTDF-----KDY 44
Query: 63 GRYNVDQLADLIEEQ----WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
+ + + +EE + +LTGGEP +QVD I + G+ +A+E+
Sbjct: 45 QEMSDEDILYKVEELRKDKIKDAGQPKPMIILTGGEPTMQVDGAFIDMFHAAGYFVAMES 104
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
NGT EPP+ +DW+ VSPK + ELK +F + + G + LQP D
Sbjct: 105 NGTKEPPKQLDWLTVSPKEHVKVAQ--CDELKCIFDGEHQV--DTFGIKAYYYYLQPCDT 160
Query: 179 PFLEENTNL---AISYCFQNPKWRLSVQTHKFIGIR 211
++N + ++Y Q+PKWRLS+QTHK IG +
Sbjct: 161 GDAQKNQEILSACVAYIEQHPKWRLSLQTHKLIGFK 196
>gi|332173072|gb|AEE22326.1| Radical SAM domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 248
Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 67/243 (27%), Positives = 95/243 (39%), Gaps = 51/243 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
+ Y I E+F +LQGEG H G ++F R GC + C +CDT
Sbjct: 23 LNTYKINEVFESLQGEGAHTGVPSIFIRLQGCPV-----------GCPWCDTKHTWEIDL 71
Query: 57 -------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
+ + + QL DL + +LTGGEP + L
Sbjct: 72 NLKVEASVVMAQNVDTEQWFEHTPKQLLDLFTQHG----YTASNIILTGGEPCMYDLTDL 127
Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL-VFP 154
L + G+ + +ET+GT E D W+ VSPK K E+K V
Sbjct: 128 SSVLIENGYSVQIETSGTYEIMAHPDTWVTVSPKVNMPGKRDVLKSALLRANEIKHPVAM 187
Query: 155 QVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
+ ++ + + E LQP+ + T L I C WRLS+QTHKF
Sbjct: 188 EKHIEELDQVLTLLEGSNTTKPLIYLQPISQ--QKRATELCIKTCIAR-NWRLSLQTHKF 244
Query: 208 IGI 210
IGI
Sbjct: 245 IGI 247
>gi|86133041|ref|ZP_01051623.1| radical SAM superfamily protein [Polaribacter sp. MED152]
gi|85819904|gb|EAQ41051.1| radical SAM superfamily protein [Polaribacter sp. MED152]
Length = 210
Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEEFYTIQGEGSHTGTAAYFIRVGGCDV-----------GCHWCDVK----ESWNA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +IE +K V+TGGEPL+ + + L K + +ET+G
Sbjct: 60 DLHPPTMADSIIENV----KKYTDTVVITGGEPLMWSMDYITELLQKNNIKTHIETSGAY 115
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQV---NVSPENYIGF-DFERFSLQP 175
DW C+SPK + ELK++ + + E + LQP
Sbjct: 116 SFSGKWDWFCLSPKKTKLPLTENYREADELKMIIHNKSDFDFAEEQATKVGKKCQLFLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ T L + Y +NPKW++S+QTHK++ I
Sbjct: 176 -EWSKKEKMTELIVDYVMKNPKWKVSLQTHKYLNI 209
>gi|304413345|ref|ZP_07394818.1| radical SAM superfamily domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
gi|304284188|gb|EFL92581.1| radical SAM superfamily domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
Length = 265
Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 98/236 (41%), Gaps = 40/236 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG A+F R GC + C +CDT
Sbjct: 42 YPINEIFQSLQGEGYFTNVPAIFIRLQGCPV-----------ACSWCDTKHTWDIKKDKE 90
Query: 64 ---------RYNVDQLADLIEEQWIT---GEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
D ++ E+Q + + + R+ V+TGGEP L PL L + G
Sbjct: 91 IDIQGITVKTVAKDTWSNANEQQLVAICKEKYQARHVVITGGEPCLYDLQPLTSLLEENG 150
Query: 112 FEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQVNVSPEN 162
+ +ET+GT W+ VSPK G D ++ E+K V + ++ N
Sbjct: 151 YRCQIETSGTHPVRCSTASWVTVSPKIGMKGGLKLLDQALQRADEIKHPVARERDIERLN 210
Query: 163 YIGFDFE-----RFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ +LQP+ EE T L I C ++ WRLSVQ HK++ IR
Sbjct: 211 NLLDKLNDGKKPVIALQPIRKTEKESEEATKLCIETCIKH-NWRLSVQMHKYLKIR 265
>gi|312129858|ref|YP_003997198.1| radical sam domain protein [Leadbetterella byssophila DSM 17132]
gi|311906404|gb|ADQ16845.1| Radical SAM domain protein [Leadbetterella byssophila DSM 17132]
Length = 202
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 26/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F TLQGEG H+G+ A F R GC++ C +CD +
Sbjct: 7 LPVMESFYTLQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK----ESWDAE 51
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ ++ D++ E GR V+TGGEPL+ L L ++GF+ +ET+G
Sbjct: 52 AHPQFRVEDIVN---GALEYPGRLAVITGGEPLMYDLNELTAELKQKGFQTNIETSGAHP 108
Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQPM 176
DWIC SP KA + ELK +V+ + + LQ +
Sbjct: 109 LSGDWDWICFSPKKFKAPLEEFYAVANELKVIVYNSSDFDFAEIHAAKVNPDCKLFLQ-V 167
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E + Y NP+WR+S+QTHK++ I
Sbjct: 168 EWDRRERMMPSIVEYVKANPQWRVSIQTHKYMNI 201
>gi|238786213|ref|ZP_04630161.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC
43970]
gi|238712877|gb|EEQ04941.1| hypothetical protein yberc0001_11680 [Yersinia bercovieri ATCC
43970]
Length = 223
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 90/236 (38%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
LY I E+F TLQGEG G A+F R GC + C +CDT +
Sbjct: 1 MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49
Query: 62 GG---------RYNVDQLADLIEEQWIT----GEKEGRYCVLTGGEPLLQVDVPLIQALN 108
D E+Q + R+ V+TGGEP + +PL L
Sbjct: 50 REVDMQRIMVKTAESDAWGSASEQQLLAIFSQQGYTARHVVITGGEPAIYDLLPLTSVLE 109
Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLV------FP 154
+ G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 110 QAGYSCQIETSGTHEVQCSAATWVTVSPKVKMRGGLKILPQALQRADEIKHPVGRLRDIE 169
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ V +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 170 ALEVLLATLHDDKKRIIALQPISQKD--DATKLCIETCIAR-NWRLSMQTHKYLNI 222
>gi|121728537|ref|ZP_01681560.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147675014|ref|YP_001216924.1| hypothetical protein VC0395_A0978 [Vibrio cholerae O395]
gi|254286183|ref|ZP_04961143.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|121629201|gb|EAX61641.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|146316897|gb|ABQ21436.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|150423852|gb|EDN15793.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227013282|gb|ACP09492.1| conserved hypothetical protein [Vibrio cholerae O395]
Length = 245
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 92/235 (39%), Gaps = 41/235 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---- 58
LY I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 24 LYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72
Query: 59 ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
T A + +++ + ++ V+TGGEP + L QA
Sbjct: 73 QTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEA 132
Query: 110 RGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 133 MGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDN 192
Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 193 LDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244
>gi|67924094|ref|ZP_00517541.1| Radical SAM [Crocosphaera watsonii WH 8501]
gi|67854055|gb|EAM49367.1| Radical SAM [Crocosphaera watsonii WH 8501]
Length = 213
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I E F +LQGEG G A F R +GC++ C +CD +
Sbjct: 18 TYPIVETFHSLQGEGTWTGVNAFFIRLAGCDV-----------HCPWCDQK----ESWTS 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+Y + L E ++ V+TGGEPL+ PL +AL K G + +ET+G+
Sbjct: 63 KKYPQQSIKILAE---VSKMANPFMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSGSH 119
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQV---NVSPENYIGFDFERF-SLQP 175
DW+ SPK + ELK+V + + E E LQP
Sbjct: 120 SFTGQFDWVTFSPKPFKLPHESIYSQVNELKIVIANQEDLHWAEEEAKKVPREAIKYLQP 179
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E+ +L Y ++P+WR+S+QTHKF+G+R
Sbjct: 180 EWN--TPESQSLIFDYILKHPQWRMSLQTHKFLGVR 213
>gi|254228266|ref|ZP_04921695.1| Organic radical activating enzymes [Vibrio sp. Ex25]
gi|262394169|ref|YP_003286023.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25]
gi|151939339|gb|EDN58168.1| Organic radical activating enzymes [Vibrio sp. Ex25]
gi|262337763|gb|ACY51558.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. Ex25]
Length = 226
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 4 TLYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEN 52
Query: 57 ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
++ + V +++E+ + G ++ V+TGGEP + PL +A
Sbjct: 53 DQRQIGDILVKTEDSPTWCVASAENIVEQYQLQG-FNAKHIVITGGEPCIYDLRPLTKAF 111
Query: 108 NKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
G + +ET+GT E W+ VSPK K+ E+K V Q ++
Sbjct: 112 EDMGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDI 171
Query: 159 SPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLSVQTHK++ I
Sbjct: 172 DHLDELLANANVAVETVIALQPISQK--PRATQLCIETCIAR-NWRLSVQTHKYLSI 225
>gi|123441108|ref|YP_001005097.1| hypothetical protein YE0753 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088069|emb|CAL10857.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 223
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 86/236 (36%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG G A+F R GC + C +CDT +
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49
Query: 62 GGRYNVDQLADLIEEQWIT-------------GEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ +E R+ V+TGGEP + PL L
Sbjct: 50 REVDMQRIMVKTVESDAWATASEQQLLNIFSQQGYTARHVVITGGEPAIYDLFPLTTQLE 109
Query: 109 KRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLV------FP 154
+ G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 110 QAGYSCQIETSGTHEVQCSAATWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRLRDIE 169
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 170 ALEQLLETLTDDKKRIIALQPISQKD--EATKLCIETCIAK-NWRLSMQTHKYLNI 222
>gi|109899267|ref|YP_662522.1| radical SAM family protein [Pseudoalteromonas atlantica T6c]
gi|109701548|gb|ABG41468.1| Radical SAM [Pseudoalteromonas atlantica T6c]
Length = 248
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 67/243 (27%), Positives = 91/243 (37%), Gaps = 51/243 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
+ Y I E+F +LQGEG H G ++F R GC + C +CDT
Sbjct: 23 LNTYKINEVFESLQGEGAHTGVPSIFIRLQGCPV-----------GCPWCDTKHTWEIDQ 71
Query: 57 -------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
+ + +QL L ++ E +LTGGEP + L
Sbjct: 72 NLKVAAPVVMAQNEDTAQWFEHTPEQLLALFKQH----EYTASNIILTGGEPCMYDLTDL 127
Query: 104 IQALNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLK-------IKGGQELKLVFPQ 155
L + GF + +ET+GT E D W+ VSPK K + E+K
Sbjct: 128 SSVLIENGFSVQIETSGTYEILTHPDTWVTVSPKVNMPGKRDVLKSAMHRANEIKHPVAM 187
Query: 156 VNVSPENYI--------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
E LQP+ + T L I C WRLS+QTHKF
Sbjct: 188 EKHIEELEHVLTLLVGSDNPKPLIYLQPISQ--QKRATELCIKTCIAR-NWRLSLQTHKF 244
Query: 208 IGI 210
IGI
Sbjct: 245 IGI 247
>gi|327405865|ref|YP_004346703.1| Radical SAM domain-containing protein [Fluviicola taffensis DSM
16823]
gi|327321373|gb|AEA45865.1| Radical SAM domain protein [Fluviicola taffensis DSM 16823]
Length = 204
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 26/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y + E F T+QGEG + G A F R GC++ C +CD
Sbjct: 9 YPVMEHFYTIQGEGKYTGTSAYFIRLGGCDV-----------GCVWCDVKESW-DADIHP 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ VD+L ++ + G V+TGGEP + L+ AL+ G +A+ET+GT
Sbjct: 57 KMTVDELITVVAQ------YPGELVVITGGEPAMYDLSVLVDALHSIGKYVAIETSGTSP 110
Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVF-PQVNVSPENYIGF---DFERFSLQPM 176
+DW SP K+ D ELK+V Q ++ D LQP
Sbjct: 111 LVGAVDWYTFSPKKFKSPVDEAYNKASELKIVIFHQSDLKWAEEHSLKVNDACVLYLQP- 169
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ I Y +PKW++S+QTHK++ I
Sbjct: 170 EWSKREQLLPTIIEYVKNHPKWKISLQTHKYLEI 203
>gi|238750569|ref|ZP_04612069.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380]
gi|238711217|gb|EEQ03435.1| hypothetical protein yrohd0001_3960 [Yersinia rohdei ATCC 43380]
Length = 225
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 94/242 (38%), Gaps = 50/242 (20%)
Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-- 57
M + Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MLMQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKA 49
Query: 58 ---------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ G + Q+ D+ +Q R+ V+TGGEP + P
Sbjct: 50 ANREVDLQRILVKTAESDAWGNASEQQVLDIFIQQG----YTARHVVITGGEPAIYDLRP 105
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLV-- 152
L L + G+ +ET+GT W+ VSPK ++ E+K
Sbjct: 106 LTSHLEQAGYSCQIETSGTHAVQCSPTTWVTVSPKVNMRGGMKVLPQALQRADEIKHPVG 165
Query: 153 ----FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + + +LQP+ E+ T L I C WRLS+QTHK++
Sbjct: 166 RLRDIEALELLLQTLDDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYL 222
Query: 209 GI 210
I
Sbjct: 223 NI 224
>gi|120437087|ref|YP_862773.1| hypothetical protein GFO_2752 [Gramella forsetii KT0803]
gi|117579237|emb|CAL67706.1| conserved hypothetical protein [Gramella forsetii KT0803]
Length = 210
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEEFYTIQGEGFHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ ++ ++E K + V+TGGEPL L +L K+G +I +ET+G
Sbjct: 60 EVHPPTRIGQIVE----NAVKYSKTIVITGGEPLTWDMTELTGSLKKKGCDIHIETSGAY 115
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
+ DWIC+SPK D ELK++ + + E + LQP
Sbjct: 116 DLTGTWDWICLSPKKIKLPKDKIYPVANELKVIVFNKHDLKFAEEQAAKVGEKCVLYLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ EE L + Y NPKW++S+QTHK++ I
Sbjct: 176 -EWSKREEMIPLIVDYVMANPKWKVSLQTHKYLNI 209
>gi|260772755|ref|ZP_05881671.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP
69.14]
gi|260611894|gb|EEX37097.1| queuosine Biosynthesis QueE Radical SAM [Vibrio metschnikovii CIP
69.14]
Length = 224
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M LY + EIF T+QGEG G AVF R C + C +CDT
Sbjct: 1 MTLYKVNEIFETIQGEGVFTGVPAVFVRLQQCPV-----------GCAWCDTKQTW-DAE 48
Query: 61 KGGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ + +Q+ A+ I Q+ ++ V+TGGEP L VPL +A
Sbjct: 49 PQDQRSFEQIIVKQGDSPTWCQGSAEQIVAQYQQQGYTAKHIVITGGEPCLYDLVPLTEA 108
Query: 107 LNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK-------GGQELKLV------ 152
G + +ET+GT E W+ VSPK K+ E+K
Sbjct: 109 FEAIGCQCQIETSGTFEIKASAKTWVTVSPKIAMKGKLPIVPSALQRANEIKHPVGTEKD 168
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q+ +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 IAQLEALLAQVAISPDTIIALQPISQK--PRATQLCIETCITR-NWRLSIQTHKYLNI 223
>gi|262404009|ref|ZP_06080564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586]
gi|262349041|gb|EEY98179.1| queuosine Biosynthesis QueE Radical SAM [Vibrio sp. RC586]
Length = 222
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
+Y I E+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MYRINEMFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWDMLESE 49
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + D+++ T E + ++ V+TGGEP + L Q
Sbjct: 50 QTDFSHILLKAGDSPTWCQASAQDVVQRY-QTQEYQAKHIVITGGEPCIYDLTELTQVFE 108
Query: 109 KRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G + +ET+GT E + W+ VSPK K+ E+K V + ++
Sbjct: 109 AIGCQCQIETSGTYEILATPNTWVTVSPKVAMKGKLPILDSSLQRANEIKHPVATENDIE 168
Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 NLDALLLRAKVSSATVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 221
>gi|28898413|ref|NP_798018.1| hypothetical protein VP1639 [Vibrio parahaemolyticus RIMD 2210633]
gi|28806630|dbj|BAC59902.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
Length = 222
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
+Y + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 49
Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++ + D++E+ G ++ V+TGGEP + PL +A
Sbjct: 50 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQG-FNAKHIVITGGEPCIYDLRPLSKAFE 108
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157
G + +ET+GT E W+ VSPK K+ E+K ++
Sbjct: 109 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 168
Query: 158 VSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E D + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 HLDELLANADIKVETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 221
>gi|255531962|ref|YP_003092334.1| Radical SAM domain-containing protein [Pedobacter heparinus DSM
2366]
gi|255344946|gb|ACU04272.1| Radical SAM domain protein [Pedobacter heparinus DSM 2366]
Length = 207
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
L + E F T+QGEG + G+ A F R GC++ C +CD +
Sbjct: 10 TLLPLMEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWD 54
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + ++ + G+ V+TGGEPL+ L + L ++G +ET+G
Sbjct: 55 AELHPLTPADAIVAK---AESYPGKAVVITGGEPLIYNLDYLTRRLREKGILTFIETSGA 111
Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQ 174
DWIC+SP KA ELK++ + + LQ
Sbjct: 112 YPLSGDWDWICLSPKKFKAPRPDITPYANELKVIVFNKSDFEWAEKYAETVSANCKLYLQ 171
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + +E T L I Y NPKW +S+QTHKF+ I
Sbjct: 172 P-EWSKSKEITPLIIDYVMANPKWEISLQTHKFLNI 206
>gi|269967852|ref|ZP_06181896.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269827557|gb|EEZ81847.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 226
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 92/236 (38%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 5 LYKLNEMFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADEND 53
Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++ + V +++E+ G ++ V+TGGEP + PL +A
Sbjct: 54 QRQIGDILVKTEDSPTWCVASAENIVEQYQQQG-FNAKHIVITGGEPCIYDLRPLTKAFE 112
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
G + +ET+GT E W+ VSPK K+ E+K
Sbjct: 113 DMGCQCQIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDID 172
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ N +LQP+ T L I C WRLSVQTHK++ I
Sbjct: 173 HLDDLLANANVAAETIIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 225
>gi|238761644|ref|ZP_04622619.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC
33638]
gi|238700158|gb|EEP92900.1| hypothetical protein ykris0001_11220 [Yersinia kristensenii ATCC
33638]
Length = 223
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEAD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G + QL D+ +Q R+ V+TGGEP + +PL
Sbjct: 50 REVDMQRIMVKTAESDLWGTASEQQLLDIFRQQG----YTARHVVITGGEPAIYDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLVFPQV 156
L + G+ +ET+GT E W+ VSPK ++ E+K ++
Sbjct: 106 SQLEQAGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRL 165
Query: 157 NVSPENYIGF------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALEVLLVTLTDDKKRIIALQPISQK--EDATKLCIETCIAK-NWRLSMQTHKYLNI 222
>gi|325287093|ref|YP_004262883.1| Radical SAM domain-containing protein [Cellulophaga lytica DSM
7489]
gi|324322547|gb|ADY30012.1| Radical SAM domain protein [Cellulophaga lytica DSM 7489]
Length = 215
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 20 MLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWNA 64
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + ++ K V+TGGEPL PL +AL + + +ET+G
Sbjct: 65 ATHPPTTIDAIVN----NAAKYSNTIVVTGGEPLTWNMAPLTEALKAKNLQTHIETSGAY 120
Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVN---VSPENYIGFD-FERFSLQP 175
DWIC+SPK + ELK++ N + E + LQP
Sbjct: 121 TLTGIWDWICLSPKKNKLPQGIIYDKADELKMIIYNKNDFKFAEEQAAKVNKDCILYLQP 180
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ T L + + +NP+W++S+QTHK++ I
Sbjct: 181 -EWSVKDKMTPLIVDFVMKNPQWKVSLQTHKYLNI 214
>gi|218438303|ref|YP_002376632.1| radical SAM protein [Cyanothece sp. PCC 7424]
gi|218171031|gb|ACK69764.1| Radical SAM domain protein [Cyanothece sp. PCC 7424]
Length = 210
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I E F ++QGEG G A F R GC+++ C +CD +
Sbjct: 15 TYPIVETFHSVQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK----ESWNA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
R+ + L + + ++TGGEPL+ PL L K G ++ +ET+G+
Sbjct: 60 KRHPHQSVDTLAQAAKMAN---PAIVIITGGEPLMHDLDPLTTELKKLGLQVHLETSGSH 116
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFP---QVNVSPENYIGFDFERF-SLQP 175
DW+ SPK D ELK+V ++++ LQP
Sbjct: 117 PFSGNFDWVTFSPKPYKKPHDSIYNYVNELKVVVANEEDLHMAEVQAAKLSLTVIKYLQP 176
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ L + ++P+WR+S+QTHKF+ +R
Sbjct: 177 EWN--TPNSKELIFDFVLKHPQWRISLQTHKFLNVR 210
>gi|238919074|ref|YP_002932588.1| hypothetical protein NT01EI_1143 [Edwardsiella ictaluri 93-146]
gi|238868642|gb|ACR68353.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 223
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 96/237 (40%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F +LQGEG + G A+F R GC + C +CD+ Q +
Sbjct: 1 MQYPINEVFQSLQGEGFYTGVPAIFIRLQGCPV-----------GCSWCDSQHTWHQRPE 49
Query: 62 GGRYNVDQLADLIEE--------------QWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ ++ Q+ + E + R V+TGGEP + +PL AL
Sbjct: 50 -RQADLAQIVEKTAESEAWASADAAALVALLRQRGYQARRVVITGGEPCMYDLLPLTTAL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQV--- 156
+ G+ +ET+GT W+ VSPK G ++ E+K +
Sbjct: 109 EQGGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKHPVARARDI 168
Query: 157 ---NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ G +LQP+ EE T L I C WRLS+QTHK++ I
Sbjct: 169 EALDALLARLDGELPPVVALQPISCK--EEATRLCIETCLAR-NWRLSMQTHKYLNI 222
>gi|34557972|ref|NP_907787.1| organic radical activating enzyme [Wolinella succinogenes DSM 1740]
gi|34483690|emb|CAE10687.1| conserved hypothetical protein-Organic radical activating enzymes
[Wolinella succinogenes]
Length = 193
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y + EIF ++QGEG H+G+ A+F R GCNL C FCD
Sbjct: 1 MYPVTEIFYSIQGEGHHSGKAALFVRLHGCNL-----------ACDFCD-----EPSHTQ 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
G Y ++E+ + V+TGGEP L PLI+ L K G+ +A+ETNG
Sbjct: 45 GEYENQSQEAILEQL---RAYPAHFVVITGGEPTLFDLNPLIKFLQKEGYFVAIETNGYN 101
Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG--P 179
Q DWI SPK L +G ELK + + F + LQP
Sbjct: 102 LAHIQAADWITYSPKNWNTLAKEGYDELKFIIHHASDITPLLALFQEKPLYLQPQSDGSA 161
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
N + ++P+WRLS+QTHK + I
Sbjct: 162 LNAANVARCVELILEHPEWRLSLQTHKILEI 192
>gi|311746196|ref|ZP_07719981.1| radical activating enzyme [Algoriphagus sp. PR1]
gi|126576423|gb|EAZ80701.1| radical activating enzyme [Algoriphagus sp. PR1]
Length = 208
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F T+QGEG G A F R GC++ C +CD + + G
Sbjct: 13 LPLMEAFYTIQGEGRFTGHPAYFIRLGGCDV-----------GCVWCDVK----ESWEAG 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
++ + + +++ E + GR V+TGGEPL+ PL L ++GF +ET+G
Sbjct: 58 KWPILPIEEIVAEAV---KYPGRLVVITGGEPLMYDLGPLTSLLKEKGFTTNIETSGAHP 114
Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQPM 176
DW+C SP K K ELK +VF + + LQP
Sbjct: 115 FSGDFDWVCFSPKKFKKPHPSIYKVANELKVVVFHNSDFAFAEEHALKVNENCELRLQP- 173
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ T L I+Y +P W++S+QTHKF+ I
Sbjct: 174 EWSKSEKFTPLIINYSKYHPNWKISLQTHKFMDI 207
>gi|89890614|ref|ZP_01202124.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7]
gi|89517529|gb|EAS20186.1| organic radical activating enzyme [Flavobacteria bacterium BBFL7]
Length = 219
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 27/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F T+QGEG H G+ A F R GC++ C +CD +
Sbjct: 23 MMLPLMEEFYTIQGEGSHTGKAAYFIRVGGCDV-----------GCHWCDVK----ESWD 67
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ + ++ K + V+TGGEPL PL L + G ++ +ET+G
Sbjct: 68 QEKHPPTAVEAIVA----NAAKYSKTIVVTGGEPLTWDMGPLTTGLKEEGMQVHIETSGA 123
Query: 122 IEPPQGIDWICVS---PKAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQ 174
DWIC+S K + ELK++ + E + LQ
Sbjct: 124 YPLSGTWDWICLSPKKMKMPLPEVYEAAHELKVIVFNKHDFAFAKAEAEKVSSNCKLYLQ 183
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + E+ L + +NP+W +S+QTHK++ I
Sbjct: 184 P-EWSVREKMIPLITEFVMENPEWHVSLQTHKYLNI 218
>gi|295135621|ref|YP_003586297.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87]
gi|294983636|gb|ADF54101.1| radical SAM superfamily protein [Zunongwangia profunda SM-A87]
Length = 223
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 28 MLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 72
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
G + + +++E + V+TGGEPL L +L K+G +I +ET+G
Sbjct: 73 GLHPPTHVGEIVENALKY----SKTIVITGGEPLTWDMTTLTDSLKKQGCQIHIETSGAY 128
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
DWIC+SPK ELK++ + E + LQP
Sbjct: 129 PLTGIWDWICLSPKKIKLPEPEIYPVANELKVIIFNKHDFKFAEEQAAQVGEHCILYLQP 188
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ L + Y +NPKW++S+QTHK++ I
Sbjct: 189 -EWSNREKMIPLIVDYVMRNPKWKVSLQTHKYLNI 222
>gi|91215960|ref|ZP_01252929.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC
700755]
gi|91185937|gb|EAS72311.1| hypothetical protein P700755_15536 [Psychroflexus torquis ATCC
700755]
Length = 210
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWDP 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
R+ ++ +IE +K V+TGGEPL L Q L I +ET+G
Sbjct: 60 ERHPPTRIGSIIE----NAKKYSNTIVITGGEPLTWDMSMLTQGLKDNQLSIHIETSGAY 115
Query: 123 EPPQGIDWICVSPKAG---CDLKIKGGQELKLVFPQVNVSPENYIGF----DFERFSLQP 175
+ DWIC+SPK ELK++ + + LQP
Sbjct: 116 DLTGVWDWICLSPKKNKLPKPEIYPKVDELKVIIFNKHDFKFAEEHASQVGEDCELFLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ T + Y ++PKWR+S+QTHK++ I
Sbjct: 176 -EWSVREKMTPQIVEYVMKHPKWRISLQTHKYLNI 209
>gi|126657071|ref|ZP_01728242.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110]
gi|126621614|gb|EAZ92324.1| hypothetical protein CY0110_28234 [Cyanothece sp. CCY0110]
Length = 213
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 27/218 (12%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+K Y I E F +LQGEG G A F R +GC++ C +CD +
Sbjct: 16 LKTYPIVERFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
Y + L + V+TGGEPL+ PL + L + G + +ET+G
Sbjct: 61 NSNLYPQQSIKTLTDAAKAAN---PAMVVITGGEPLIHDLFPLTKGLKQLGLRVHLETSG 117
Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SL 173
DWI +SP K + ELK++ +N + + + L
Sbjct: 118 AYPLTGEFDWITLSPKPFKVPHETVYSQVNELKVIIANEADLNWAEKQEKKVPSQTIKYL 177
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
QP E+ +L Y NP+WR+S+Q HKF+G+R
Sbjct: 178 QPEWNS--PESKSLIFDYILSNPQWRMSLQIHKFLGVR 213
>gi|71280858|ref|YP_269588.1| radical SAM domain-containing protein [Colwellia psychrerythraea
34H]
gi|71146598|gb|AAZ27071.1| radical SAM domain protein [Colwellia psychrerythraea 34H]
Length = 222
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 98/239 (41%), Gaps = 48/239 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F T+QGEG G+ ++F R GC + C +CDT
Sbjct: 1 MNYKINELFETIQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWDIELD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ ++ ++ + + L++E + ++ V+TGGEP + PL
Sbjct: 50 DQVSPDIMLAKKAETSQWANFSAEDILALVKE----KHFKAKHIVITGGEPCMVDLTPLC 105
Query: 105 QALNKRGFEIAVETNGTIEPP-QGIDWICVSPKAGC-------DLKIKGGQELKL-VFPQ 155
+ G+ +ET+GT E W+ VSPK + E+K V +
Sbjct: 106 ETFEDLGYSTQIETSGTFEIITTEKCWVTVSPKIKMRGGYDILASAMSRANEIKHPVATE 165
Query: 156 VNVSPEN----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NV + LQP+ + T LAI+ C N WRLSVQ HK+IGI
Sbjct: 166 QNVDDLKELLAMHQVENTPVYLQPISQK--KRATELAIATCIAN-NWRLSVQVHKYIGI 221
>gi|153836184|ref|ZP_01988851.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810]
gi|149750459|gb|EDM61204.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ3810]
Length = 226
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53
Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++ + D++E+ G ++ V+TGGEP + PL +A
Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQG-FNAKHIVITGGEPCIYDLRPLSKAFE 112
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157
G + +ET+GT E W+ VSPK K+ E+K ++
Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 172
Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E D + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 173 HLDELLANADIKTETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 225
>gi|308049094|ref|YP_003912660.1| radical activating enzyme [Ferrimonas balearica DSM 9799]
gi|307631284|gb|ADN75586.1| radical activating enzyme [Ferrimonas balearica DSM 9799]
Length = 222
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 90/236 (38%), Gaps = 42/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y + EIF T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MQYPVNEIFETIQGEGHFTGVPAVFLRLQGCPV-----------GCAWCDTRHTWEVLAE 49
Query: 58 ----------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
G R+ L L+ + R+ V+TGGEP + PL + +
Sbjct: 50 DQVEPGLVIGAGDGEPRWAQWPLEQLVAHL-TGPQYRARHLVITGGEPCMYDLRPLTERM 108
Query: 108 NKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVS 159
G+ +ET+G E W+ VSPK G ++ E+K
Sbjct: 109 IAAGWRCQIETSGCFEVKTDPQTWVTVSPKVGMKGGLEVQRSALERANEIKHPVAMQKHV 168
Query: 160 PENY-----IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E + + + +LQP+ L + C + WRLSVQTHK++ I
Sbjct: 169 DELDALLAGVALEGKEVALQPISQQH--RANELCVRVCIER-NWRLSVQTHKYLNI 221
>gi|294635382|ref|ZP_06713876.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
gi|291091269|gb|EFE23830.1| radical SAM domain protein [Edwardsiella tarda ATCC 23685]
Length = 249
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I EIF +LQGEG + G A+F R GC + C +CD+
Sbjct: 27 MQYPINEIFHSLQGEGFYTGLPAIFIRLQGCPV-----------GCSWCDSKHTWQQDAV 75
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ +V L L+++ R+ V+TGGEP L +PL
Sbjct: 76 RQVALEQVVEKAAESDAWASADVATLCALLQQ----RGYAARHVVITGGEPCLHDLLPLT 131
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQV 156
AL + G++ +ET+GT W+ VSPK ++ E+K +
Sbjct: 132 LALEQAGYQCQIETSGTHPVRCSEQTWVTVSPKVAMRGGMAVLTSALRRANEIKHPVARE 191
Query: 157 NVSPENYIGFDF------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ E T L I C WRLS+QTHK++ I
Sbjct: 192 RDIAALDALLATLGEALPQVVALQPISCK--EGATRLCIDTCLAR-NWRLSMQTHKYLHI 248
>gi|260876575|ref|ZP_05888930.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034]
gi|260895066|ref|ZP_05903562.1| organic radical activating enzyme [Vibrio parahaemolyticus
Peru-466]
gi|308125822|ref|ZP_05777715.2| organic radical activating enzyme [Vibrio parahaemolyticus K5030]
gi|308126346|ref|ZP_05909319.2| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037]
gi|308085913|gb|EFO35608.1| organic radical activating enzyme [Vibrio parahaemolyticus
Peru-466]
gi|308093608|gb|EFO43303.1| organic radical activating enzyme [Vibrio parahaemolyticus AN-5034]
gi|308110779|gb|EFO48319.1| organic radical activating enzyme [Vibrio parahaemolyticus AQ4037]
gi|308111580|gb|EFO49120.1| organic radical activating enzyme [Vibrio parahaemolyticus K5030]
Length = 226
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53
Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++ + D++E+ G ++ V+TGGEP + PL +A
Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQG-FNAKHIVITGGEPCIYDLRPLSKAFE 112
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157
G + +ET+GT E W+ VSPK K+ E+K ++
Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLRSALERANEIKHPVGTQKDID 172
Query: 158 VSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E D + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 173 HLDELLANADIKVETVIALQPISQK--PRATQLCIETCIAR-NWRLSIQTHKYLSI 225
>gi|238786798|ref|ZP_04630599.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC
33641]
gi|238725166|gb|EEQ16805.1| hypothetical protein yfred0001_17670 [Yersinia frederiksenii ATCC
33641]
Length = 223
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 90/240 (37%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKDAN 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ G QL D+ +Q R+ V+TGGEP + PL
Sbjct: 50 REVDMQRIMVKTAESDAWGTATEQQLLDIFIQQG----YTARHVVITGGEPAIYDLFPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L + G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 SHLEQAGYSCQIETSGTHEVQCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRL 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALEALLATLDDDKKRIIALQPISQK--EDATKLCIETCIVK-NWRLSMQTHKYLNI 222
>gi|332160379|ref|YP_004296956.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318604386|emb|CBY25884.1| queuosine Biosynthesis QueE Radical SAM [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664609|gb|ADZ41253.1| hypothetical protein YE105_C0757 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859861|emb|CBX70192.1| uncharacterized protein ygcF [Yersinia enterocolitica W22703]
Length = 223
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKAAD 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ G + QL D+ +Q R+ V+TGGEP + +PL
Sbjct: 50 REVDMQRIMVKTVENDAWGTASEQQLLDIFLQQG----YTARHVVITGGEPAIYDLLPLT 105
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLV---- 152
L + G+ +ET+GT E W+ VSPK ++ E+K
Sbjct: 106 SQLEQAGYSCQIETSGTHEVQCSAATWVTVSPKVNMRGGLKILPQALQRADEIKHPVGRL 165
Query: 153 --FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ EE T L I C WRLS+QTHK++ I
Sbjct: 166 RDIEALEALLATLADDKKRIIALQPISQK--EEATKLCIETCIAK-NWRLSMQTHKYLNI 222
>gi|114563049|ref|YP_750562.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400]
gi|114334342|gb|ABI71724.1| radical activating enzyme [Shewanella frigidimarina NCIMB 400]
Length = 222
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 63/237 (26%), Positives = 92/237 (38%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG + G A+F R GC + C +CDT
Sbjct: 1 MKYPVNEVFETIQGEGTYTGVPALFVRLQGCPV-----------GCAWCDTKQTWDVLPE 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G D + + + ++ VLTGGEP L L
Sbjct: 50 NKVTAEQVIQVDGTIGRW--ADHTGYTLLQAFHDKGFTAKHIVLTGGEPCLYNLTELTTI 107
Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
+ G+++ +ET+GT + D W+ VSPK K E+K +
Sbjct: 108 FIEAGYQVQIETSGTFDVKCHSDVWVTVSPKINMKGGYKVLEQALNRANEIKHPIATEHH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IDELDKLLLNIDVSDKTICLQPISQK--ARATELAMKVCISR-NWRLSIQTHKYLNI 221
>gi|54309500|ref|YP_130520.1| putative organic radical activating enzyme [Photobacterium
profundum SS9]
gi|46913936|emb|CAG20718.1| putative organic radical activating enzymes [Photobacterium
profundum SS9]
Length = 222
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y I E+F T+QGEG G A+F R C + C +CDT
Sbjct: 1 MYKINEVFETIQGEGTFTGVPAIFVRLQVCPV-----------GCSWCDTKQTW-DAEPT 48
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+++ + I R+ V+TGGEP + VPL AL
Sbjct: 49 DYASLNDIMAKKGDSPLWTNIDAQGIVTLLQDQGYTARHVVITGGEPCIYDLVPLTAALE 108
Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
GF +ET+GT E W+ VSPK K+ E+K
Sbjct: 109 TAGFNCQIETSGTSEILATENTWVTVSPKINMKAKLPVLASALSRADEIKHPVGTSKDIK 168
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ + I +LQP+ T+L I C + WRLS+QTHK++ I
Sbjct: 169 QLDALIDGVILKQNVTIALQPISQK--PRATDLCIETCIKR-NWRLSIQTHKYLAI 221
>gi|119774960|ref|YP_927700.1| radical activating enzyme [Shewanella amazonensis SB2B]
gi|119767460|gb|ABM00031.1| radical activating enzyme [Shewanella amazonensis SB2B]
Length = 233
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 85/236 (36%), Gaps = 40/236 (16%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y I E+F T+QGEG H G A+F R GC + C +CDT
Sbjct: 11 MTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPV-----------ACPWCDTAQTWDVLE 59
Query: 61 KGGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ D + A + + + V+TGGEP + L Q
Sbjct: 60 QSKVAPADVIQVDGSIGRWAMHSASSLVAAFNQKGFTAKLVVITGGEPCMHDLTDLTQGF 119
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVS 159
GF +ET+GT E ++ VSPK E+K
Sbjct: 120 EAEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLKQALVRANEIKHPVATDAHI 179
Query: 160 PENYIGFD-----FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E + + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 180 DELDALLEGIDTSGKTICLQPISQK--PRATELAMKTCIAR-NWRLSIQTHKYLNI 232
>gi|227537400|ref|ZP_03967449.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227242778|gb|EEI92793.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 207
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 26/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F T+QGEG H G+ A F R GC++ C +CD +
Sbjct: 12 LPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDAE 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ + ++E + V+TGGEPL+ L L G + +ET+G
Sbjct: 57 LHPLTAADTIVEH---ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYP 113
Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQPM 176
DWIC+SP KA + ELK++ + + D + LQP
Sbjct: 114 LSGHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVNDTCKLYLQP- 172
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E T L I Y NPKW +S+QTHK++ I
Sbjct: 173 EWSKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206
>gi|209809367|ref|YP_002264905.1| hypothetical protein VSAL_II0580 [Aliivibrio salmonicida LFI1238]
gi|208010929|emb|CAQ81334.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 226
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 58/236 (24%), Positives = 88/236 (37%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
L+ I E+F T+QGEG G ++F R GC + C +CDT
Sbjct: 5 LFKINELFETIQGEGTFTGVPSIFLRLQGCPV-----------GCSWCDTKQTWDVELSD 53
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + +I+ + ++ V+TGGEP + L + L
Sbjct: 54 KTDLATILAKTEDAPSWTELTALQIID-MLVQQGYTAKHMVITGGEPCMYDLTSLTEELE 112
Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSP 160
K G+ +ET+GT W+ VSPK K+ E+K
Sbjct: 113 KNGYRCQIETSGTYPILTSNNTWVTVSPKINMKGKLPVLDEALMRANEIKHPVGTTKDIE 172
Query: 161 ENYIGFD------FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ D +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 173 QLEALLDGVNLLTDVTIALQPISQK--PRATELCIETCIKK-NWRLSIQTHKYLAI 225
>gi|288799933|ref|ZP_06405392.1| GntS [Prevotella sp. oral taxon 299 str. F0039]
gi|288333181|gb|EFC71660.1| GntS [Prevotella sp. oral taxon 299 str. F0039]
Length = 192
Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats.
Identities = 78/212 (36%), Positives = 105/212 (49%), Gaps = 30/212 (14%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF TLQGEG H GR AVF RF+GCNL C FCDT
Sbjct: 2 RVNEIFYTLQGEGAHTGRAAVFLRFAGCNLT-----------CSFCDTQH--------ET 42
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
Y +++ + + V+TGGEP +Q+ LI L+ G ++ +ETNGTI P
Sbjct: 43 YTSMSEEEIVISI---NKFPSTWVVITGGEPTIQLTESLIHKLHAIGKKVQIETNGTIIP 99
Query: 125 PQGIDWICVSPKAGC----DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
P DWI VSPK ++K + ELK+V+ N + Y + + LQP D
Sbjct: 100 PPNTDWITVSPKFEYCKRAEIKAERINELKVVYDGSN-NMSVYETIKADHYFLQPCDLQD 158
Query: 181 LEENTNLA---ISYCFQNPKWRLSVQTHKFIG 209
+N + I Y +NPKWRLS+QTHK +
Sbjct: 159 ETKNKKIINQVIEYIKKNPKWRLSLQTHKILN 190
>gi|225011685|ref|ZP_03702123.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A]
gi|225004188|gb|EEG42160.1| Radical SAM domain protein [Flavobacteria bacterium MS024-2A]
Length = 210
Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 27/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F TLQGEG H G A F R GC++ C +CD +
Sbjct: 16 LPLMEAFYTLQGEGYHKGSAAYFIRIGGCDV-----------GCHWCDVK----ESWNAD 60
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ Q+ ++ E + V+TGGEPL+ PL AL+K +I +ET+G
Sbjct: 61 LHPPTQIDSIVAEAKKYSD----TVVVTGGEPLMWKMDPLTDALHKEDMQIHIETSGAYS 116
Query: 124 PPQGIDWICVSPKAGCDLKIKGG---QELKLVFPQVN---VSPENYIGF-DFERFSLQPM 176
DW C+SPK ++ ELK++ + + E + LQP
Sbjct: 117 LSGSWDWFCLSPKKNKLPIVEAYAVADELKMIVYNKDDFRFAEEQAAKVGQECKLFLQP- 175
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E L + Y NPKW++S+QTHK++ I
Sbjct: 176 EWSKRETVMPLLVDYVLGNPKWKVSLQTHKYLNI 209
>gi|197286098|ref|YP_002151970.1| hypothetical protein PMI2252 [Proteus mirabilis HI4320]
gi|194683585|emb|CAR44467.1| conserved hypothetical protein [Proteus mirabilis HI4320]
Length = 223
Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 91/237 (38%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG G A+F R GC + C +CDT + +
Sbjct: 1 MQYPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTW-EKEE 48
Query: 62 GGRYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + + + I + ++ V+TGGEP L PL + L
Sbjct: 49 SKKVPLGDIPIKTQESDTWGIATVEDILSLFRQQRYSAKHVVITGGEPCLYDLRPLTEGL 108
Query: 108 NKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVS 159
K GF+ +ET+GT + W+ +SPK G I E+K +
Sbjct: 109 EKAGFDCQIETSGTHDILCSEATWVTLSPKVGMRGGLSVLSSAINRANEIKHPVAREKDI 168
Query: 160 PENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ E T L I C + WR S+QTHK++ I
Sbjct: 169 EALDDLLRLRTQQPMAIVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 222
>gi|282879508|ref|ZP_06288242.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1]
gi|281306655|gb|EFA98681.1| radical SAM domain protein [Prevotella timonensis CRIS 5C-B1]
Length = 199
Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 79/217 (36%), Positives = 113/217 (52%), Gaps = 30/217 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ Y + EIF +LQGEG HAG+ AVF RF+ CNL C FCDT+F
Sbjct: 6 RTYKVNEIFYSLQGEGHHAGKAAVFVRFAKCNL-----------HCSFCDTNF------- 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
Y +IE + V+TGGEP LQV L+Q + G+ +++ETNGT
Sbjct: 48 -DEYTEMSAQQIIENVQQYA--PCNFVVITGGEPTLQVTATLLQLFHVHGYYVSMETNGT 104
Query: 122 IEPPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM- 176
P+G+DWI SPK D++IK E+K+V+ ++ P + G + E +QP
Sbjct: 105 HPIPKGVDWITCSPKKAFIEAGDVQIKQANEIKVVYDGIH--PISTFGIEAEERYVQPCD 162
Query: 177 --DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D +E AI + +P+W+LS+Q HK IGI+
Sbjct: 163 VGDESRNKEILQKAIQFVKTHPQWKLSLQLHKLIGIQ 199
>gi|86132652|ref|ZP_01051245.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
gi|85816894|gb|EAQ38079.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
Length = 213
Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 18 MLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWDA 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + E + V+TGGEPL+ PL + L G +ET+G
Sbjct: 63 AIHPPTNANTIAENAAKYSD----TIVVTGGEPLMWDMNPLTKKLKSLGLTTHIETSGAY 118
Query: 123 EPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGF----DFERFSLQP 175
E DWIC+SPK K + ELK++ + + LQP
Sbjct: 119 ELSGDWDWICLSPKKRMLPKASVLEKANELKVIIFNKSDFDFAEKHATQVGEDCILYLQP 178
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ L + Y +NPKW++S+QTHK++ I
Sbjct: 179 -EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212
>gi|33864484|ref|NP_896044.1| putative organic radical activating protein [Prochlorococcus
marinus str. MIT 9313]
gi|33641264|emb|CAE22394.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. MIT 9313]
Length = 226
Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 94/239 (39%), Gaps = 48/239 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG H GR A F R +GC++ C +CDT
Sbjct: 5 LPVVETFHSLQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKH----SWNSR 49
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116
+ L L EE + + VLTGGEPL PL +AL++ I +
Sbjct: 50 NHPQITLEQLAEETATAAKDGAAFVVLTGGEPLQHNIAPLCEALHRATETNHGGPLAIHL 109
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVNVS--PENYIGFDFER- 170
ET+G + WI +SPK + ELK+V + + E+ E
Sbjct: 110 ETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDMAKAALEAR 169
Query: 171 ------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP G LA + +P WRLS+QTHK++GIR
Sbjct: 170 KNDNASQSRLSNTSKEPLLFLQP--GWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226
>gi|300772841|ref|ZP_07082710.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300759012|gb|EFK55839.1| radical SAM domain protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 207
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 26/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F T+QGEG H G+ A F R GC++ C +CD +
Sbjct: 12 LPLMEEFYTIQGEGYHTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDAE 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ + ++E + V+TGGEPL+ L L G + +ET+G
Sbjct: 57 LHPLTAADTIVEH---ANVHPSKTVVVTGGEPLIYNLDYLTSQLQNAGIQTFLETSGAYP 113
Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQPM 176
DWIC+SP KA + ELK++ + + D + LQP
Sbjct: 114 LSGHWDWICLSPKKFKAPRPDVLANAGELKVIVFNKSDFQWAEEHARLVSDTCKLYLQP- 172
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E T L I Y NPKW +S+QTHK++ I
Sbjct: 173 EWSKAAEMTPLIIDYVMANPKWEISLQTHKYLNI 206
>gi|269102881|ref|ZP_06155578.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162779|gb|EEZ41275.1| queuosine Biosynthesis QueE Radical SAM [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 222
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 93/235 (39%), Gaps = 41/235 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
+Y + E+F T+QGEG G A+F R C + C +CDT
Sbjct: 1 MYKLNEVFETIQGEGVFTGVPAIFVRLQICPV-----------GCSWCDTKQTWSAEPQD 49
Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
+ T + A I ++ V+TGGEP + PL QAL
Sbjct: 50 FTTLDRIMAKTGDSPLWTEIDAQGIVSLLQDQGYTAKHVVITGGEPCIYDLRPLTQALEA 109
Query: 110 RGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160
G++ +ET+GT E W+ VSPK K+ E+K V Q ++
Sbjct: 110 SGYQCQIETSGTSEVQATEATWVTVSPKINMKGKLPVLEKALSRANEIKHPVGTQKDLDQ 169
Query: 161 ENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 170 LDELLNGVALRSDVTIALQPISQK--PRATELCIETCIKR-NWRLSIQTHKYLAI 221
>gi|284929204|ref|YP_003421726.1| organic radical activating enzyme [cyanobacterium UCYN-A]
gi|284809648|gb|ADB95345.1| organic radical activating enzyme [cyanobacterium UCYN-A]
Length = 208
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 27/218 (12%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ Y I E F ++QGEG G A F R +GCN+ C +CD T
Sbjct: 11 LTTYPIAETFHSIQGEGAWTGVSAFFIRLAGCNV-----------GCPWCDQKESWTDKT 59
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+Y+ + L+ ++ V+TGGEPL+ PL L K G +I +ET+G
Sbjct: 60 -FPKYSSEMLSTKAQQA------NASIVVITGGEPLMYNLFPLTDKLRKLGMKIHLETSG 112
Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERF-SL 173
+ +W+ SP KA + ELK++ + + + + L
Sbjct: 113 SYPFSGNFNWVTFSPKPFKAPHESIYVKASELKIIIADQKDFEWAEKQKSKTNSQSINFL 172
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
QP +L Y ++P+WR+S+QTHKF+G+R
Sbjct: 173 QPEWNSRTSS--SLIYKYICKHPEWRMSLQTHKFLGVR 208
>gi|71282067|ref|YP_269647.1| hypothetical protein CPS_2947 [Colwellia psychrerythraea 34H]
gi|71147807|gb|AAZ28280.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
Length = 226
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG-- 59
Y I EIF TLQGEG G+ ++F R GC + C +CDT
Sbjct: 5 TTYKINEIFETLQGEGSFTGQPSIFIRLQGCPV-----------GCSWCDTKHTWEVSLE 53
Query: 60 ---------TKGGRYNVDQLADLI--EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+K + + ++ +E +++ + ++ V+TGGEP + PL Q
Sbjct: 54 QEVAQNNIVSKKSENDSWGIFTIVQLKELFLSEGYQAKHIVITGGEPCMYDLKPLCQNFE 113
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSP 160
G+ VET+GT E W+ VSPK K E+K
Sbjct: 114 ALGYSCQVETSGTFEIQVSKKCWVTVSPKVNMKGGFKVLKSALLRADEIKHPVATEQHID 173
Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ N + ++ +QP+ + T LAI C +N WRLSVQ HK+IGI
Sbjct: 174 DLKALLNEHEIENKQIYIQPISQK--KRATELAIRSCIEN-NWRLSVQVHKYIGI 225
>gi|328468975|gb|EGF39935.1| hypothetical protein VP10329_15155 [Vibrio parahaemolyticus 10329]
Length = 226
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------ 56
LY + E+F T+QGEG G AVF R C + C +CDT
Sbjct: 5 LYKLNEMFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWDAEEKD 53
Query: 57 --------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++ + D++E+ G ++ V+TGGEP + PL +A
Sbjct: 54 QRPIGDILVKTEDSPTWCTASAEDIVEQYKQQG-FNAKHIVITGGEPCIYDLRPLSKAFE 112
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLVF---PQVN 157
G + +ET+GT E W+ VSPK K+ E+K ++
Sbjct: 113 DMGCQCQIETSGTSEVVTSEKTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDID 172
Query: 158 VSPENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E D + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 173 HLDELLANADIKTETVIALQPISQK--PRATQLCIETCISR-NWRLSIQTHKYLSI 225
>gi|269964054|ref|ZP_06178359.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831195|gb|EEZ85349.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 226
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 64/237 (27%), Positives = 92/237 (38%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
LY + E+F T+QGEG G AVF R C + C +CDT +
Sbjct: 4 TLYKLNEMFETIQGEGVFTGVPAVFVRLQVCPV-----------GCSWCDTKQTWYAEEE 52
Query: 62 GGR--------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
G R + D++ E G ++ V+TGGEP + L A
Sbjct: 53 GQRQIGDILVKTEDSPTWCFASAEDIVAEYKKQG-FNAKHIVITGGEPCIYDLRALTAAF 111
Query: 108 NKRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLV------F 153
+ G + +ET+GT E W+ VSPK K+ E+K
Sbjct: 112 EEMGCQCQIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDI 171
Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ + + +LQP+ T L I C WRLSVQTHK++ I
Sbjct: 172 DQLDSLLASADIAEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 225
>gi|323491404|ref|ZP_08096589.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546]
gi|323314530|gb|EGA67609.1| organic radical activating enzyme [Vibrio brasiliensis LMG 20546]
Length = 222
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y I E+F T+QGEG G +VF R C + C +CDT T
Sbjct: 1 MYKINEMFQTIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTW-DATPQ 48
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
++D++ I ++ R+ V+TGGEP + PL A
Sbjct: 49 DECSLDEILAKKEDSPAWCSVSAQDIVNEYQKQGYTARHIVITGGEPCIYDLRPLTAAFE 108
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVS 159
G + +ET+GT + W+ VSPK K+ E+K V Q ++
Sbjct: 109 AIGCQCQIETSGTYQVDASENTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDID 168
Query: 160 PENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 169 QLDELLTRAQVPQSTTIALQPISQK--PRATQLCIDTCVER-NWRLSIQTHKYLSI 221
>gi|167751865|ref|ZP_02423992.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216]
gi|167660106|gb|EDS04236.1| hypothetical protein ALIPUT_00107 [Alistipes putredinis DSM 17216]
Length = 211
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F T+QGEG H G+ A F R GC++ CR+CD +
Sbjct: 14 RKLPLVEDFYTIQGEGFHTGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
Y +++++ + + V+TGGEPLL PL AL G +I +ET+G+
Sbjct: 59 PKLYPPTDISEVVRR---ATSCQAQAIVITGGEPLLYPLGPLTSALKGHGLKIFLETSGS 115
Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFD----FERFSLQ 174
DW+C+SPK ELK++ + + + LQ
Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLPEAFWRAHELKVIVEREADLQWAERNAEQVGRECKLFLQ 175
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + EE L + Y +P W +S+QTHK++ I
Sbjct: 176 P-EWSVSEEIMPLLVEYVKAHPAWNISIQTHKYMHI 210
>gi|261252909|ref|ZP_05945482.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP
102891]
gi|260936300|gb|EEX92289.1| queuosine Biosynthesis QueE Radical SAM [Vibrio orientalis CIP
102891]
Length = 222
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 92/236 (38%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----- 57
+Y I E+F T+QGEG G +VF R C + C +CDT
Sbjct: 1 MYKINEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTWDATPTD 49
Query: 58 ---------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+ + D++ E G ++ V+TGGEP + PL QA
Sbjct: 50 ERPLNEILAKTEDSPTWCGVSAEDIVNEYKKQG-YTAKHIVITGGEPCIYDLRPLTQAFE 108
Query: 109 KRGFEIAVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
+ G + +ET+GT E W+ VSPK K+ E+K
Sbjct: 109 ENGCQCQIETSGTFEVKATTKTWVTVSPKVAMKGKLPVIDSALLRANEIKHPVATQKDID 168
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ E + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 QLDELLERAKVSEQTTVALQPISQK--PRATQLCIDVCVAR-NWRLSIQTHKYLSI 221
>gi|307150184|ref|YP_003885568.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7822]
gi|306980412|gb|ADN12293.1| Radical SAM domain protein [Cyanothece sp. PCC 7822]
Length = 205
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I E F ++QGEG G A F R GC+++ C +CD +
Sbjct: 10 TYPIVETFHSIQGEGAWTGVSAFFIRLGGCDVY-----------CPWCDQK----ESWNP 54
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
R+ + +L+E + V+TGGEPL+ +PL + L G + +ET+G+
Sbjct: 55 KRHPHQSVENLLESAKMAN---PAIVVITGGEPLMHDLIPLTRELQLLGLRVHLETSGSH 111
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFP---QVNVSPENYIGFDFERF-SLQP 175
W+ SPK + + ELK+V ++ + LQP
Sbjct: 112 PFSGNFHWVTFSPKPYKRPHESIYEQVNELKVVIANEEDLHWAQRQAAKLPSTVVKYLQP 171
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ L + ++P+WR+S+QTHKF+ +R
Sbjct: 172 EWN--TPNSGALIFEFVLKHPQWRMSLQTHKFLNVR 205
>gi|332170651|gb|AEE19906.1| Radical SAM domain protein [Krokinobacter diaphorus 4H-3-7-5]
Length = 213
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 18 MLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWDA 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + E + V+TGGEPL+ PL L G +ET+G
Sbjct: 63 AIHPPTNANTIAENAAKYSD----TIVVTGGEPLMWDMNPLTHKLKSLGLTTHIETSGAY 118
Query: 123 EPPQGIDWICVSPKAGCDLKI---KGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
E DWIC+SPK K + ELK++ + + ++ + LQP
Sbjct: 119 ELSGEWDWICLSPKKRMLPKASVLEKANELKVIIFNKSDFDFAEKHAAQVGEDCILYLQP 178
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ L + Y +NPKW++S+QTHK++ I
Sbjct: 179 -EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 212
>gi|150026231|ref|YP_001297057.1| hypothetical protein FP2200 [Flavobacterium psychrophilum JIP02/86]
gi|149772772|emb|CAL44256.1| Protein of unknown function YgcF [Flavobacterium psychrophilum
JIP02/86]
Length = 210
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 25/214 (11%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEEFYTIQGEGYHTGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + ++E K + V+TGGEPL L Q L ++ +ET+G
Sbjct: 60 ALHPPTKTDVIVE----NATKYAKTIVVTGGEPLTWDMTVLTQRLKAENLQVHIETSGAY 115
Query: 123 EPPQGIDWICVSPKAGC---DLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSLQPM 176
DW C+SPK + ELK++ + E +
Sbjct: 116 PVTGAWDWFCLSPKKNKLPVAEAYEIAHELKVIIYNKHDFIFAEEQAAKVNKNAILFLQS 175
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ EE T + Y NPKWR+S+QTHK++ I
Sbjct: 176 EWSKKEEMTPFIVDYVMNNPKWRVSLQTHKYLNI 209
>gi|91793369|ref|YP_563020.1| radical activating enzyme [Shewanella denitrificans OS217]
gi|91715371|gb|ABE55297.1| radical activating enzyme [Shewanella denitrificans OS217]
Length = 222
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 89/237 (37%), Gaps = 44/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y + E+F T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MNYPVNEVFETIQGEGCFTGVPALFVRLQGCPV-----------GCAWCDTKQTWDVLAD 49
Query: 57 ----------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ GT G N D + + ++ VLTGGEP L +
Sbjct: 50 NKVTPEQVITVDGTIGRWANHD--GASLITAFKAKGFTAKHIVLTGGEPCLYDLTDITHD 107
Query: 107 LNKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLVFPQVNV 158
G+ + +ET+GT E D W+ VSPK K E+K N
Sbjct: 108 FIAAGYSVQIETSGTFEVKCHQDVWVTVSPKINMKGGYKVLEQALIRANEIKHPIATQNH 167
Query: 159 SPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ T LA+ C WRLS+QTHK++ I
Sbjct: 168 IDELDELLADIDLSGKTICLQPISQKV--RATELAMKTCIAR-NWRLSIQTHKYLNI 221
>gi|90414517|ref|ZP_01222492.1| putative organic radical activating enzyme [Photobacterium
profundum 3TCK]
gi|90324425|gb|EAS40987.1| putative organic radical activating enzyme [Photobacterium
profundum 3TCK]
Length = 222
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 90/236 (38%), Gaps = 43/236 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y I E+F T+QGEG G A+F R C + C +CDT
Sbjct: 1 MYKINEVFETIQGEGTFTGVPAIFVRLQVCPV-----------GCSWCDTKQTW-DAEPT 48
Query: 63 GRYNVDQLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
+++ + I R+ V+TGGEP + +PL AL
Sbjct: 49 DYASLNDIMAKKGDSPLWTNIDAQGIVALLQDQGYTARHVVITGGEPCIYDLIPLTAALE 108
Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKLV------FP 154
GF +ET+GT E W+ VSPK K+ E+K
Sbjct: 109 TAGFNCQIETSGTSEILATEDTWVTVSPKINMKAKLPVLASALSRADEIKHPVGTSKDIE 168
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q++ +LQP+ T+L I C + WRLS+QTHK++ I
Sbjct: 169 QLDTLINGVTLKQNVTIALQPISQK--PRATDLCIETCIKR-NWRLSIQTHKYLAI 221
>gi|227356608|ref|ZP_03840995.1| radical SAM domain protein [Proteus mirabilis ATCC 29906]
gi|227163364|gb|EEI48291.1| radical SAM domain protein [Proteus mirabilis ATCC 29906]
Length = 250
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 62/238 (26%), Positives = 92/238 (38%), Gaps = 43/238 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ Y I E+F TLQGEG G A+F R GC + C +CDT +
Sbjct: 27 LMQYPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTW-EKE 74
Query: 61 KGGRYNVDQLA--------------DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
+ + + + + I + ++ V+TGGEP L PL +
Sbjct: 75 ESKKVPLGDIPIKTQESDTWGIATVEDILSLFRQQRYSAKHVVITGGEPCLYDLRPLTEG 134
Query: 107 LNKRGFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNV 158
L K GF+ +ET+GT + W+ +SPK G I E+K +
Sbjct: 135 LEKAGFDCQIETSGTHDILCSEATWVTLSPKVGMRGGLNVLSSAINRANEIKHPVAREKD 194
Query: 159 SPENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ E T L I C + WR S+QTHK++ I
Sbjct: 195 IEALDDLLRLRTQQPMAIVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 249
>gi|319952143|ref|YP_004163410.1| radical sam domain protein [Cellulophaga algicola DSM 14237]
gi|319420803|gb|ADV47912.1| Radical SAM domain protein [Cellulophaga algicola DSM 14237]
Length = 215
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 20 MLPLMEEFYTIQGEGFHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWNA 64
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +I K V+TGGEPL PL + L R + +ET+G
Sbjct: 65 DTHPPTATETII----SNAAKYSDTIVITGGEPLTWDMGPLTKGLKARNLQTHIETSGAY 120
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ---ELKLVF---PQVNVSPENYIG-FDFERFSLQP 175
DWIC+SPK + + ELK++ + E LQP
Sbjct: 121 PLTGVWDWICLSPKKNKLPEGRIYDEAHELKMIIFNKHDFIFAEEQAAKTNKECILYLQP 180
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ L + Y +NPKW++S+QTHK++ I
Sbjct: 181 -EWSVRDKMVPLIVDYVMKNPKWKVSLQTHKYLNI 214
>gi|78780168|ref|YP_398280.1| putative organic radical activating protein [Prochlorococcus
marinus str. MIT 9312]
gi|78713667|gb|ABB50844.1| organic radical activating enzyme-like protein [Prochlorococcus
marinus str. MIT 9312]
Length = 225
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 48/242 (19%)
Query: 1 MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
MK+ + E F +LQGEG HAG+ A F R +GC C +CDT
Sbjct: 1 MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------EVGCSWCDTKHSWD 49
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KR 110
+ +Y + +I+ I E+ +CV+TGGEPL +A+ +
Sbjct: 50 E----NKYPSVSIEKIIDRIKIAREQGASFCVITGGEPLQHNLDKFCKAIKQMKMGKEQN 105
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNV--------- 158
+I +ET+G DWI +SPK K K E+K++ +
Sbjct: 106 SMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFAIQIKK 165
Query: 159 ---------SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
E+ + + + F LQP ++ +LAI + NP W+LS+QTHK++
Sbjct: 166 EILKQYEFSKIEDSLKKEDKIFYLQPAWN--NKDGFSLAIDFVKNNPDWKLSLQTHKYLK 223
Query: 210 IR 211
I+
Sbjct: 224 IK 225
>gi|123967114|ref|YP_001012195.1| putative organic radical activating protein [Prochlorococcus
marinus str. MIT 9515]
gi|123201480|gb|ABM73088.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. MIT 9515]
Length = 223
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 45/238 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ E F +LQGEG H G+ A F R +GCN+ C +CDT
Sbjct: 3 NFLPLVEKFHSLQGEGFHTGQSAFFIRLAGCNV-----------GCPWCDTKH----SWD 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEI 114
++ + + ++I E ++ + V+TGGEPL L QA+N+ +I
Sbjct: 48 KEKFPLISIQEIINEIKRARKQGASFLVITGGEPLHHNLDNLCQAINEETSTENQSPIKI 107
Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQ-------VNVSPENYI 164
+ET+G DWI +SPK K K ELK++ +++ E
Sbjct: 108 HIETSGVSNLSGSFDWITLSPKRHQPPKTYFLKNCNELKIIINDQKDIDFAIDIKQEIMN 167
Query: 165 GFD-----------FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ +++ LQP ++ +L I + NP+W LS+QTHK++ I+
Sbjct: 168 KYQNSSSTKNFYKLDKKYYLQPAWQ--NDDGFSLTIDFIKNNPEWNLSLQTHKYLKIK 223
>gi|170076908|ref|YP_001733546.1| radical SAM domain-containing protein [Synechococcus sp. PCC 7002]
gi|169884577|gb|ACA98290.1| Radical SAM domain protein [Synechococcus sp. PCC 7002]
Length = 218
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 31/218 (14%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I E F ++QGEG G A F R +GC++ C +CDT
Sbjct: 23 TYPIVETFHSIQGEGFWCGTAAFFIRLAGCDV-----------GCPWCDTKI----SWNP 67
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
R+ + L E+ + + V+TGGEPL+ PL L + G + +ET+G
Sbjct: 68 KRHPQVSVGQLKEQVQTA---QPKIIVITGGEPLMHDLYPLTTGLKETGIPLHLETSGAH 124
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173
DW+ +SP KA ELK+V Q + + ++ L
Sbjct: 125 PLNGHFDWLTLSPKPFKAPLPEIYDHVSELKVVIDQA--TDFQWAESQVQKIAANIPKYL 182
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
QP + +L Y +P+WRL +QTHKF+G+R
Sbjct: 183 QP--QWENPASQSLIFDYILAHPEWRLGLQTHKFLGVR 218
>gi|237809236|ref|YP_002893676.1| radical activating enzyme [Tolumonas auensis DSM 9187]
gi|237501497|gb|ACQ94090.1| radical activating enzyme [Tolumonas auensis DSM 9187]
Length = 225
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 86/239 (35%), Gaps = 44/239 (18%)
Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-- 56
M Y I EIF ++QGEG +G A+F R GC C +CDT
Sbjct: 1 MMSNHYPINEIFQSIQGEGFFSGVPAIFVRLQGC-----------KVGCSWCDTKHSWEL 49
Query: 57 ------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
++ + I + E R+ V+TGGEP + L
Sbjct: 50 DADNLIPVRQLFTDKKPKAGWSWLS-PEEILSCFSAEEYTARHVVITGGEPCEYDLMVLS 108
Query: 105 QALNKRGFEIAVETNGTIEPPQGI-DWICVSPKAGC-------DLKIKGGQELKLVFPQV 156
Q L G+ + +ET+GT W+ VSPK + E+K
Sbjct: 109 QTLIAHGYRVQIETSGTQPVQADDACWVTVSPKINMAGGYDVLPDVLLRANEIKHPVATA 168
Query: 157 NVSPENYIGFD-----FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + LQP+ T LA+ C Q WRLSVQ HK++ I
Sbjct: 169 KHIAQLDALLAGIDTSEKVICLQPISQK--SRATELAMKICIQR-NWRLSVQLHKYLDI 224
>gi|154490137|ref|ZP_02030398.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC
43184]
gi|154089029|gb|EDN88073.1| hypothetical protein PARMER_00367 [Parabacteroides merdae ATCC
43184]
Length = 180
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 76/208 (36%), Positives = 100/208 (48%), Gaps = 29/208 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG H G AVF RFSGCNL C FCDT +G
Sbjct: 1 MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLK-----------CSFCDTRH-----EEG 44
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + I +LTGGEP L +D I L+ G I +ETNGT
Sbjct: 45 ILMSDEDILQAISA------FPSNVVILTGGEPSLWIDQTFIDLLHMAGKYICIETNGTN 98
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
P+GIDW+ SPK G L++ E+K+V+ +++ Y G LQP
Sbjct: 99 PLPEGIDWVTCSPK-GFPLRLTHIDEIKVVYTGQDLT--EYAGLKATWHFLQPCSCL--- 152
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
NT + Y +P+W LS+QTHK I I
Sbjct: 153 -NTKEVVEYILHHPQWHLSLQTHKLIDI 179
>gi|312887506|ref|ZP_07747102.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
gi|311299994|gb|EFQ77067.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
Length = 207
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
L + E F T+QGEG + G+ A F R GC++ C +CD +
Sbjct: 10 TLLPLMEEFYTIQGEGYNTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DASI 57
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
D + D + G+ V+TGGEPL+ L L ++G + +ET+G
Sbjct: 58 HPLTPSDTIVD------NAVKYPGKAVVVTGGEPLIYNLDYLTAQLQQKGIKTFIETSGA 111
Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQ 174
DWIC+SP KA ELK +VF + + + + LQ
Sbjct: 112 YPLSGSWDWICLSPKKFKAPSASVAPYAHELKVIVFNKSDFAWAEQYAALVSPGCKLYLQ 171
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + +E L + Y NP+W +S+QTHK++ I
Sbjct: 172 P-EWSKSKEMIPLIVDYVMNNPQWEISLQTHKYLNI 206
>gi|15641377|ref|NP_231009.1| hypothetical protein VC1365 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|153819362|ref|ZP_01972029.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153821325|ref|ZP_01973992.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|227081536|ref|YP_002810087.1| hypothetical protein VCM66_1320 [Vibrio cholerae M66-2]
gi|229505054|ref|ZP_04394564.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286]
gi|229511276|ref|ZP_04400755.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33]
gi|229518394|ref|ZP_04407838.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9]
gi|229608058|ref|YP_002878706.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236]
gi|254848487|ref|ZP_05237837.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|298498551|ref|ZP_07008358.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9655859|gb|AAF94523.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|126510107|gb|EAZ72701.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126521143|gb|EAZ78366.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|227009424|gb|ACP05636.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229345109|gb|EEO10083.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC9]
gi|229351241|gb|EEO16182.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae B33]
gi|229357277|gb|EEO22194.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae BX 330286]
gi|229370713|gb|ACQ61136.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae MJ-1236]
gi|254844192|gb|EET22606.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|297542884|gb|EFH78934.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 245
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 41/235 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---- 58
LY I E+F +QGEG G AVF R GC + C +CDT
Sbjct: 24 LYRINEMFEIIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSD 72
Query: 59 ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
T A + +++ + ++ V+TGGEP + L QA
Sbjct: 73 QTSFSQILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEA 132
Query: 110 RGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSP 160
G +ET+GT E W+ VSPK K+ E+K V + ++
Sbjct: 133 MGCRCQIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDN 192
Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 193 LDELLARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 244
>gi|312884429|ref|ZP_07744133.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367741|gb|EFP95289.1| hypothetical protein VIBC2010_14679 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 238
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
KLY + E+F T+QGEG G +VF R C + C +CDT +
Sbjct: 16 KLYKVNEMFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTW-DASP 63
Query: 62 GGRYNVDQL--------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ ++ A+ + +++ R+ V+TGGEP + +PL +A
Sbjct: 64 KDERTLKEILSKTTDSPTWCRASANDVVSEYLRQGYTARHIVITGGEPCIYDLIPLTEAF 123
Query: 108 NKRGFEIAVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
+ +ET+GT E + W+ VSPK K+ ELK V Q ++
Sbjct: 124 EAINCKCQIETSGTSEVITSPNTWVTVSPKIAMKGKLPVLPSALIRANELKHPVATQKDI 183
Query: 159 SPENYI-----GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 184 DRLDDLLSGVSLSEDTEIALQPISQK--PRATELCIEVCIKR-NWRLSIQTHKYLSI 237
>gi|159030634|emb|CAO88302.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 224
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 31/218 (14%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y + E F ++QGEG G A F R GC+++ C +CD +
Sbjct: 29 TYPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNA 73
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
RY L +L+E + + V+TGGEPL+ PL + +G + +ET+G
Sbjct: 74 HRYPQKSLGELVE---MAKDANPAMVVITGGEPLMHNLAPLTEEFKNQGLRVHLETSGAH 130
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173
DW+ SP K ELK+V N ++ + L
Sbjct: 131 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV--ANPEDLDWAAMQESKLSEGVIKYL 188
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
QP E+ L +Y ++P+WRLS+QTHKF+G+R
Sbjct: 189 QPEWN--TAESKELVFNYVLRHPQWRLSLQTHKFLGVR 224
>gi|119944858|ref|YP_942538.1| radical SAM domain-containing protein [Psychromonas ingrahamii 37]
gi|119863462|gb|ABM02939.1| Radical SAM domain protein [Psychromonas ingrahamii 37]
Length = 246
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 90/234 (38%), Gaps = 41/234 (17%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
Y + E+F T+QGEG + G A+F R GC++ C +CDT
Sbjct: 26 YKVNELFQTIQGEGFNTGVPAIFLRLQGCDV-----------GCAWCDTKHTWEINPDKQ 74
Query: 57 ------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
+ + A I + V+TGGEP L L L++
Sbjct: 75 TELILLTGSSNESTRWANVNAREIVAEIKRLGYSANLVVITGGEPCLADLRELTTVLHEF 134
Query: 111 GFEIAVETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLV------FPQV 156
F+ +ET+GT W+ +SPK ++ E+K Q+
Sbjct: 135 DFKTQIETSGTYPVLVAPPTWVTLSPKVNMRAGKVVLQSALERADEIKHPVGTEKDIEQL 194
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ EN + + LQP+ + T L C + WRLSVQ HK++GI
Sbjct: 195 DALLENLKSIEDKVICLQPISQKV--KATLLCSQVCIER-NWRLSVQMHKYLGI 245
>gi|298207940|ref|YP_003716119.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus
HTCC2559]
gi|83850581|gb|EAP88449.1| hypothetical protein CA2559_06800 [Croceibacter atlanticus
HTCC2559]
Length = 210
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 27/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 14 KMLPLMEEFYTIQGEGYHKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWD 58
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ ++ E K + V+TGGEPL L Q L G + +ET+G
Sbjct: 59 AEKHPPTATERIVSE----AVKYSKTIVVTGGEPLTWDMTLLTQMLKAEGAQTHIETSGA 114
Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFD-FERFSLQ 174
DWIC+SPK + ELK++ + + E + LQ
Sbjct: 115 YTLTGKWDWICLSPKKLKLPTKEVYEKANELKVIIFNKHDLKFAEEQAAKVNKDCILYLQ 174
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + ++ L + + NP+W++S+QTHK++ I
Sbjct: 175 P-EWSVRDKVVPLIVDFVMANPQWKVSLQTHKYLNI 209
>gi|332042673|gb|EGI78873.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
Length = 209
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 27/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 13 KMLPLMEEFYTIQGEGFHKGTAAYFVRIGGCDV-----------GCHWCDVK----ESWI 57
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + ++ ++ + V+TGGEPL L + L G I +ET+G
Sbjct: 58 AQLHPPTETEKIVA----NAKQYSKTIVVTGGEPLTWDMTELTKQLKAEGMNIHIETSGA 113
Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGFD-FERFSLQ 174
E DWIC+SPK ELK + + + E + LQ
Sbjct: 114 YELTGEWDWICLSPKKMKLPTQGVYDKANELKCIIYNKDDFRFAEEQAEKVNGDCILYLQ 173
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + ++ + + Y +NPKW++S+QTHK++ I
Sbjct: 174 P-EWSKRDKVVPMIVDYVMENPKWKVSLQTHKYLNI 208
>gi|172035924|ref|YP_001802425.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142]
gi|171697378|gb|ACB50359.1| hypothetical protein cce_1008 [Cyanothece sp. ATCC 51142]
Length = 213
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 63/218 (28%), Positives = 92/218 (42%), Gaps = 27/218 (12%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ Y I EIF +LQGEG G A F R +GC++ C +CD +
Sbjct: 16 LMTYPIVEIFHSLQGEGTWTGMSAFFIRLAGCDV-----------HCPWCDQK----ESW 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
Y + L V+TGGEPL+ PL +AL K G + +ET+G
Sbjct: 61 TSKIYPQQSIKTL---AEAAKAANPAMVVITGGEPLMYDLFPLTKALKKLGLRVHLETSG 117
Query: 121 TIEPPQGIDWICVSP---KAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SL 173
DW+ +SP K + ELK+V + + E + L
Sbjct: 118 AYPFSGQFDWVTLSPKPFKVPHESIYPQVNELKVVITNQEDFHWAEEQEKKVPPQALKYL 177
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
QP E+ +L Y + P+WR+S+Q HKF+G+R
Sbjct: 178 QPEWN--YPESQSLIFDYIRKAPQWRMSLQIHKFLGVR 213
>gi|326336650|ref|ZP_08202818.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691120|gb|EGD33091.1| GntS protein [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 205
Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG + G A F R +GCN+ C +CD +
Sbjct: 10 VLPLMESFYTIQGEGFYKGTAAYFIRLAGCNV-----------GCHWCDVK----ESWDA 54
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + ++EE + + ++TGGEPL+ PL + L +G +ET+G
Sbjct: 55 SIHTLVPIKTMVEEAFKF----SKIAIITGGEPLMYNLDPLTELLRSKGIRTHIETSGAH 110
Query: 123 EPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVN---VSPENYIGFDFERF-SLQP 175
DWIC+SPK + ELK++ + + E + + LQP
Sbjct: 111 PLTGVWDWICLSPKKNKRPLPPIHQKANELKMIIYNQHDFLFAEEMSVLTRTDCIRYLQP 170
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ + Y ++P+W++S+Q HK++ I
Sbjct: 171 -EWSRREKMIPKMVEYVMEHPQWKISLQMHKYLNI 204
>gi|124024647|ref|YP_001018954.1| organic radical activating protein [Prochlorococcus marinus str.
MIT 9303]
gi|123964933|gb|ABM79689.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. MIT 9303]
Length = 226
Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 92/239 (38%), Gaps = 48/239 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F ++QGEG H GR A F R +GC++ C +CDT
Sbjct: 5 LPVVETFHSIQGEGAHVGRSAFFIRLAGCDV-----------GCSWCDTKH----SWNSR 49
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-------GFEIAV 116
+ + L E + + VLTGGEPL PL +AL++ I +
Sbjct: 50 NHPQIAVEQLAVETATAAKNGAAFVVLTGGEPLQHNIAPLCEALHRATETNPDGPLPIHL 109
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQ----------VNVSPENY 163
ET+G + WI +SPK + ELK+V + +
Sbjct: 110 ETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHERGDLNFAESMAQAALAAR 169
Query: 164 IGFDFER-----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D + LQP G LA + +P WRLS+QTHK++GIR
Sbjct: 170 KNDDASQSRLSNASKEPLLFLQP--GWATTTGQQLAFEHVQSHPHWRLSMQTHKWLGIR 226
>gi|291514643|emb|CBK63853.1| Organic radical activating enzymes [Alistipes shahii WAL 8301]
Length = 211
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ + E F T+QGEG HAG+ A F R GC++ CR+CD +
Sbjct: 14 RMLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
Y + +I+ + V+TGGEPLL L + L +RG +I +ET+G+
Sbjct: 59 PKLYPPTDVQTVIDR---AMSCPAQAIVITGGEPLLYPLGVLTETLRERGLQIFLETSGS 115
Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFP-QVNVSPENYIGFDF---ERFSLQ 174
DW+C+SPK D + ELK++ + + LQ
Sbjct: 116 HPFSGVFDWVCLSPKRRQPPLDEAFERADELKVIVESEEDFEWAERNAARVGGKCLLFLQ 175
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + E+ + Y +P+W +S+QTHK++ I
Sbjct: 176 P-EWSVAEKVMPAIVEYAKAHPQWNISIQTHKYMHI 210
>gi|78185803|ref|YP_378237.1| organic radical activating protein [Synechococcus sp. CC9902]
gi|78170097|gb|ABB27194.1| possible organic radical activating enzyme [Synechococcus sp.
CC9902]
Length = 205
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F +LQGEG H GR A F R +GCN+ C +CDT
Sbjct: 8 PVVETFHSLQGEGHHYGRSAFFIRLAGCNV-----------GCTWCDTKH----SWPMAN 52
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIE 123
+ + L + + + V+TGGEPL PL AL++ G I +ET+G +
Sbjct: 53 HAKQDVDALAVQATQAKDAGAAFVVITGGEPLHHNLQPLTDALDRSCGLPIHLETSGVDQ 112
Query: 124 PPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFD----FERFSLQPM 176
DW+ +SPK + ELK+V + + + +QP+
Sbjct: 113 LSGRFDWVTLSPKRHHPPQQALLSRCDELKVVVLDTDDVSFAHAMANDTSTAAHLLVQPV 172
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E LAI + Q+P+WRLS+Q HKF+ IR
Sbjct: 173 W--DSETAQELAIHHVKQHPRWRLSLQNHKFLQIR 205
>gi|305665081|ref|YP_003861368.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170]
gi|88709833|gb|EAR02065.1| hypothetical protein FB2170_02240 [Maribacter sp. HTCC2170]
Length = 210
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 MLPLMEEFYTIQGEGYHKGTAAYFVRVGGCDV-----------GCHWCDVK----ESWDA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + ++ + + V+TGGEPL PL QAL + +ET+G
Sbjct: 60 ETHPPTDIKSIVVNAAVYSD----TIVVTGGEPLTWDMGPLTQALKSKNINTHIETSGAY 115
Query: 123 EPPQGIDWICVSPKAGCDL---KIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
+ DWIC+SPK + ELK++ + + E LQP
Sbjct: 116 KLTGDWDWICLSPKKNKLPSGLIYEKAHELKVIVYNKHDLIFAEEQAAQVGKNCILYLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ + + Y +NPKW++S+QTHK++ I
Sbjct: 176 -EWSVRDKVVPMIVEYVMKNPKWKVSLQTHKYLNI 209
>gi|149369786|ref|ZP_01889637.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49]
gi|149356277|gb|EDM44833.1| hypothetical protein SCB49_01894 [unidentified eubacterium SCB49]
Length = 209
Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG + G A F R GC++ C +CD +
Sbjct: 14 ILPLMEEFYTIQGEGYYKGTAAYFIRIGGCDV-----------GCHWCDVK----ESWNP 58
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + + K + V+TGGEPL+ PL + L +G +ET+G
Sbjct: 59 DIHPPTSIETIAD----NAAKYSKTIVITGGEPLMWDMNPLTELLKSKGVNTHIETSGAY 114
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGFDF-ERFSLQP 175
DWIC+SPK ELK++ + + E + + LQP
Sbjct: 115 SLSGTWDWICLSPKKMKLPTPEVYAAAHELKMIIYNKDDFRFAEEQASKVNADCKLFLQP 174
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ + Y QNPKW +S+QTHK++ I
Sbjct: 175 -EWSKRDKMVPEIVDYVMQNPKWVVSLQTHKYLNI 208
>gi|254246872|ref|ZP_04940193.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124871648|gb|EAY63364.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
Length = 207
Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 88/150 (58%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y++KEIF TLQGEG +AGR AVFCRF+GCNLWSGRE+DR A CRFCDTDFVG G
Sbjct: 1 MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAEAVCRFCDTDFVGTDGEN 60
Query: 62 GGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GG++ + L I W GE R+ V TGGEP+LQ+D PL+ AL+ GFEIA+ETNG
Sbjct: 61 GGKFKDAAALVATIAGLWPEGEAN-RFVVCTGGEPMLQLDQPLVDALHAAGFEIAIETNG 119
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
++ + IDWICVSPKA L + G ELK
Sbjct: 120 SLPVLESIDWICVSPKADAPLVVTKGNELK 149
>gi|166365320|ref|YP_001657593.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843]
gi|166087693|dbj|BAG02401.1| hypothetical protein MAE_25790 [Microcystis aeruginosa NIES-843]
Length = 205
Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 31/218 (14%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y + E F ++QGEG G A F R GC+++ C +CD +
Sbjct: 10 TYPVVETFHSVQGEGFWTGSNAFFLRLGGCDVY-----------CPWCDQK----ESWNA 54
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
RY L +L+E + V+TGGEPL+ PL + L +G + +ET+G
Sbjct: 55 HRYPQQSLRELVE---MAKGANPAMVVITGGEPLMHNLDPLTKELKNQGLRVHLETSGAH 111
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF------SL 173
DW+ SP K ELK+V + ++ + L
Sbjct: 112 PFTGVFDWVTFSPKTYKMPDPSIYARVNELKIVV--AHPEDLDWASMQESKLSEGVIKYL 169
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
QP E+ L +Y ++P+WRLS+QTHKF+G+R
Sbjct: 170 QPEWN--TAESKELVFNYVLRHPQWRLSLQTHKFLGVR 205
>gi|149191047|ref|ZP_01869307.1| organic radical activating enzyme [Vibrio shilonii AK1]
gi|148835075|gb|EDL52052.1| organic radical activating enzyme [Vibrio shilonii AK1]
Length = 226
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 92/236 (38%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I E+F T+QGEG G AVF R CN+ C +CDT +
Sbjct: 4 TRFKINEMFETIQGEGMFTGVPAVFIRLQICNV-----------GCSWCDTKQTWDANNE 52
Query: 62 GGR-------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
R D A I + + + ++ V+TGGEP L +A
Sbjct: 53 DQRSFGEIITKQGDSPTWSDVDAAEIVAMYQSQQFNAKHIVITGGEPCEYDLTALCEAFE 112
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFP---QVN 157
G +ET+GT E + W+ VSPK K+ E+K V+
Sbjct: 113 AIGCRCQIETSGTSEIRVTPVTWVTVSPKVAMKGKLPVLSSSLERADEIKHPVATQKNVD 172
Query: 158 VSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E G + + +LQP+ T L I C Q WRLSVQTHK++ I
Sbjct: 173 QLDELLQGVELKSDVVIALQPISQK--PRATELCIETCIQR-NWRLSVQTHKYLSI 225
>gi|284009093|emb|CBA76077.1| conserved hypothetical protein [Arsenophonus nasoniae]
Length = 224
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 91/238 (38%), Gaps = 44/238 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I +IF T+QGEG G A+F R GC + C +CDT
Sbjct: 1 MDYPINQIFQTIQGEGYFTGVAAIFVRLQGCPV-----------GCSWCDTKHTWAKNKQ 49
Query: 57 ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
+ + + +I+ + R+ V+TGGEP L L L
Sbjct: 50 QQRPLSIILAKKSDNEEWATCSSEQIID-LFEQNHYTARHIVITGGEPCLYDLTELTTNL 108
Query: 108 NKRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNV 158
K+G++ +ET+GT W+ VSPK K E+K V Q ++
Sbjct: 109 EKKGYQCQIETSGTHNIYCSEKTWVTVSPKVAMRGGYKILPAALNRANEIKHPVGRQRDI 168
Query: 159 SPENYI------GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Y+ LQP+ TNL I C + WRLSVQ HK++ I
Sbjct: 169 DALEYLINQLAPNHPAPHICLQPISQ--NANATNLCIETCIKR-NWRLSVQMHKYLDI 223
>gi|315126983|ref|YP_004068986.1| queC protein [Pseudoalteromonas sp. SM9913]
gi|315015497|gb|ADT68835.1| queC protein [Pseudoalteromonas sp. SM9913]
Length = 215
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 40/228 (17%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGE G ++F R GC + C +CDT
Sbjct: 1 MFETIQGEASFTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDD 49
Query: 57 -IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
++ + + A + E + + ++ V+TGGEP + P+ L+ GF
Sbjct: 50 TVEKKADSDHWAEASAAQVLELFKSRGYTAKHVVITGGEPCMYDLNPVCNLLHDHGFSTQ 109
Query: 116 VETNGTIEP-PQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGF- 166
+ET+GT E W+ VSPK ++ E+K E F
Sbjct: 110 IETSGTFEILAPAQTWVTVSPKINMRGGYKVLSSAMQRADEIKHPVAMQKHVEELEELFT 169
Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + LQP+ T LAI C WRLS+Q HK++GI
Sbjct: 170 ATGVNPKLVYLQPISQKTS--ATKLAIDTCIAK-NWRLSIQVHKYLGI 214
>gi|228473183|ref|ZP_04057938.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624]
gi|228275333|gb|EEK14125.1| radical SAM domain protein [Capnocytophaga gingivalis ATCC 33624]
Length = 200
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 27/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F T+QGEG + G A F R +GC++ C +CD +
Sbjct: 4 TILPLMEDFYTIQGEGFYRGTAAYFIRLAGCDV-----------GCHWCDVKESW-DASV 51
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
R ++++A + ++TGGEPL+ PL + L +G +ET+G
Sbjct: 52 HPRVPIEEIAQRALA-------HSKTIIITGGEPLMYNLQPLTELLKSKGARTHIETSGA 104
Query: 122 IEPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQ 174
DWIC+SPK + ELK++ + + + LQ
Sbjct: 105 HPLTGVWDWICLSPKKNKRPLPEVHQRASELKMIIYNHHDFLFAEEMSALTQPDCIRYLQ 164
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + E L + Y +NP+W++S+Q HK++ I
Sbjct: 165 P-EWSRRERMVPLIVDYVMENPQWKISLQMHKYLDI 199
>gi|284036696|ref|YP_003386626.1| organic radical activating enzyme [Spirosoma linguale DSM 74]
gi|283815989|gb|ADB37827.1| organic radical activating enzyme [Spirosoma linguale DSM 74]
Length = 216
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 27/215 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F T+QGEG H GR A F R GC++ C +CD +
Sbjct: 20 LPVMEAFYTIQGEGAHTGRAAYFIRLGGCDV-----------GCHWCDVK----ESWDAD 64
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ + L++ + GR V+TGGEPL+ L +AL GF+ +ET+G +
Sbjct: 65 AHPKQSIDALVK---GALQYPGRLAVITGGEPLMHDLTALTEALQVAGFKTNIETSGVCQ 121
Query: 124 PPQG-IDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQP 175
G DWIC SP K + ELK +++ Q + + + LQ
Sbjct: 122 TVTGSWDWICFSPKKFKKPNPAIYEKADELKVIIYNQSDFAFAESFVPYLRPDCKLFLQS 181
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
G E + Y +P+W++S+QTHKF+ I
Sbjct: 182 EWG-RSNEMLPRIVDYVKDHPQWQISLQTHKFLNI 215
>gi|282878839|ref|ZP_06287606.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
gi|281299047|gb|EFA91449.1| radical SAM domain protein [Prevotella buccalis ATCC 35310]
Length = 199
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 30/217 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ Y + EIF +LQGEG HAGR AVF RF+ CNL C FCDT+F
Sbjct: 6 RTYKVNEIFYSLQGEGHHAGRAAVFVRFAKCNL-----------HCWFCDTNF------- 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ +IE + V+TGGEP LQV L+Q + G+ +++ETNGT
Sbjct: 48 -DTFTEMSAQQIIENVQQYA--PCHFVVITGGEPTLQVTPELLQLFHIHGYYVSMETNGT 104
Query: 122 IEPPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM- 176
P+G+DW+ SPK D+ IK E+K+V+ ++ P + G + E +QP
Sbjct: 105 HPIPKGVDWVTCSPKKAFIEAGDVHIKQANEIKVVYDGIH--PISTFGIESEERYVQPCD 162
Query: 177 --DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D +E AI + +P+W+LS+Q HK IGI+
Sbjct: 163 VGDELRNKEIMQQAIQFVKTHPQWKLSLQLHKLIGIQ 199
>gi|255033903|ref|YP_003084524.1| hypothetical protein Dfer_0088 [Dyadobacter fermentans DSM 18053]
gi|254946659|gb|ACT91359.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
Length = 193
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 26/211 (12%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F TLQGEG H+GR A F R GC++ C +CD + +++
Sbjct: 1 MEAFYTLQGEGQHSGRAAYFIRLGGCDV-----------GCHWCDVKESW-DASIHPKFD 48
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + D + GR V+TGGEPL+ L AL + GF+ +ET+G
Sbjct: 49 INAIVDGALQ------YPGRLAVITGGEPLMYNLDALTGALQEAGFKTNIETSGVYPFTG 102
Query: 127 GIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQPMDGP 179
DW+C SPK K ELK + + + E+ +QP +
Sbjct: 103 HWDWVCFSPKKFKTPHPDIYKNADELKTIIYNKSDFDFAEEHAAKVSPECTLLMQP-EWS 161
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ L I Y NPKW++S+QTHKF+ I
Sbjct: 162 KQDVMLPLIIDYIKDNPKWKMSLQTHKFMNI 192
>gi|149276391|ref|ZP_01882535.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39]
gi|149232911|gb|EDM38286.1| hypothetical protein PBAL39_01687 [Pedobacter sp. BAL39]
Length = 193
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+QGEG + G+ A F R GC++ C +CD + +
Sbjct: 1 MEEFYTIQGEGFNTGKAAYFIRLGGCDV-----------GCHWCDVK----ESWDAELHP 45
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
+ D++E+ G+ V+TGGEPL+ L + L +R +ET+G
Sbjct: 46 LTAADDIVEK---ADSFPGKAVVITGGEPLIYNLDYLTRKLRERNILTFIETSGAYPLSG 102
Query: 127 GIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQPMDGP 179
DWIC+SP KA ELK++ + + LQP +
Sbjct: 103 SWDWICLSPKKFKAPRPDITPFANELKVIIFNKSDFKWAEQYAETVSKNCKLYLQP-EWS 161
Query: 180 FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+E T + I Y NPKW +S+QTHK++ I
Sbjct: 162 KSKEITPMIIEYVMANPKWEISLQTHKYLNI 192
>gi|163786121|ref|ZP_02180569.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium
ALC-1]
gi|159877981|gb|EDP72037.1| hypothetical protein FBALC1_13087 [Flavobacteriales bacterium
ALC-1]
Length = 210
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 15 LLPLMEEFYTIQGEGYHKGTAAYFVRIGGCDV-----------GCHWCDVK----ESWLP 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + ++E + V+TGGEPL PL + L +G + +ET+G
Sbjct: 60 ELHPATETTKIVENAIKYSD----IIVVTGGEPLTWDMGPLTEQLKAKGVQTHIETSGAY 115
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGFD-FERFSLQP 175
+ DWIC+SPK + ELK + + + E + LQP
Sbjct: 116 KLTGQWDWICLSPKKVKLPTEEIYDEAHELKCIIYNKDDFKFAEEQAAKINKDCILYLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ + Y NPKW++S+QTHK++ I
Sbjct: 176 -EWSKRDKMMPQIVDYVMANPKWKVSLQTHKYLNI 209
>gi|313676966|ref|YP_004054962.1| radical sam domain protein [Marivirga tractuosa DSM 4126]
gi|312943664|gb|ADR22854.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126]
Length = 207
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F T+QGEG H+G+ A F R GC++ C +CD
Sbjct: 12 LPLMESFYTIQGEGFHSGKAAYFIRLGGCDV-----------GCVWCDVK----DSWDAD 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
++ + ++ D++++ + + E R V+TGGEP + L + L ++GF + VET+G
Sbjct: 57 KWPLKKIDDIVDDAY---QYESRLAVITGGEPFMYDMHGLTKRLLQKGFHVNVETSGAHP 113
Query: 124 PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNVSPENYIGFD----FERFSLQPM 176
+DW+C+SP KA + ELK++ + + + LQP
Sbjct: 114 FTGMVDWVCLSPKKFKAPLEHWYDRADELKIIIFNKSDFKWAEEHAEKVGSDCKLMLQP- 172
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ EE L + Y +NP W +S+QTHK++ I
Sbjct: 173 EWSKREEMMPLIVEYVKENPNWGISLQTHKYLQI 206
>gi|225010558|ref|ZP_03701029.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
gi|225005387|gb|EEG43338.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
Length = 209
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 28/214 (13%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 16 LPLMEAFYTIQGEGYHKGTAAYFIRVGGCDV-----------GCHWCDVK----ESWDAE 60
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
R+ + +I++ + V+TGGEPL P+ L K G + +ET+G
Sbjct: 61 RHPPTAIEKIIQDASPY-----KTIVITGGEPLTWDMGPVTAGLKKVGLQTHIETSGAYT 115
Query: 124 PPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVNVSPENYIGFDF----ERFSLQPM 176
DWIC+SPK K ELK++ + LQP
Sbjct: 116 LTGEWDWICLSPKKNKLPLAPIYKEAHELKVIVFNKHDLEFAQEQAAQVGPNCHLYLQP- 174
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ + + + NP W++S+QTHK++ I
Sbjct: 175 EWSVKDKVVPMIVDFVMANPAWKVSLQTHKYLNI 208
>gi|257059021|ref|YP_003136909.1| radical activating enzyme [Cyanothece sp. PCC 8802]
gi|256589187|gb|ACV00074.1| radical activating enzyme [Cyanothece sp. PCC 8802]
Length = 205
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I E F ++QGEG G A F R +GC++ C +CD
Sbjct: 10 TYPIVETFHSIQGEGVWTGVNAFFIRLAGCDV-----------HCPWCDQKESW-PVQPY 57
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ L + + ++TGGEPL+ PL L G + +ET+G+
Sbjct: 58 PQQSLEALGEAAKRANPA------IVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSH 111
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175
DW+ SPK + ELK+V + + + LQP
Sbjct: 112 PFSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKYLQP 171
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E+ L Y +P WR+S+Q HKF+G+
Sbjct: 172 EWN--TPESQQLIFDYVLHHPDWRISLQVHKFLGV 204
>gi|88803479|ref|ZP_01119005.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P]
gi|88781045|gb|EAR12224.1| hypothetical protein PI23P_12842 [Polaribacter irgensii 23-P]
Length = 209
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F T+QGEG H G A F R GC++ C +CD +
Sbjct: 14 MLPLMEEFYTIQGEGCHTGTAAYFIRVGGCDV-----------GCHWCDVK----ESWNA 58
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ ++E +K V+TGGEPL+ + ++L K + +ET+G
Sbjct: 59 DLHPPTLADTIVENV----KKHANTVVITGGEPLMWSMDYITESLQKNSIKTHIETSGAY 114
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVN----VSPENYIGFDFERFSLQP 175
DW C+SP K D ELK++ + E + LQP
Sbjct: 115 AFSGKWDWFCLSPKKTKMPLDECYPEADELKMIIHNKSDFIFAEQEAEKVGQKCQLYLQP 174
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E+ T L ++Y +NPKW++S+QTHKF+ I
Sbjct: 175 -EWSKKEKMTALIVAYVMKNPKWKISLQTHKFLNI 208
>gi|110638115|ref|YP_678324.1| organic radical activating enzyme [Cytophaga hutchinsonii ATCC
33406]
gi|110280796|gb|ABG58982.1| conserved hypothetical protein; possible organic radical activating
enzyme [Cytophaga hutchinsonii ATCC 33406]
Length = 205
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F T+QGEG + GR A F R +GC++ C +CD +
Sbjct: 8 QSLPVMESFYTIQGEGHYQGRAAYFIRLAGCDV-----------GCHWCDVK----ESWD 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ + + ++ E GR V+TGGEPL+ L L + GF +ET+G
Sbjct: 53 ASQHPMQTIEHMVAE---ASAFTGRIAVITGGEPLMHDLTNLTAQLKQEGFRNHIETSGA 109
Query: 122 IEPPQGIDWICVSP---KAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDF---ERFSLQ 174
DWIC+SP KA I+ ELK +VF ++ + LQ
Sbjct: 110 HPLSGEWDWICLSPKKFKAPLPSVIEACDELKIIVFHSSDIEWAKTFLPKLKKGCKLFLQ 169
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + EE IS+ +NP+W +S+Q HKF+ I
Sbjct: 170 P-EWSRQEEMLPQIISFVKENPEWEISLQIHKFMNI 204
>gi|255534291|ref|YP_003094662.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae
bacterium 3519-10]
gi|255340487|gb|ACU06600.1| Queuosine Biosynthesis QueE Radical SAM [Flavobacteriaceae
bacterium 3519-10]
Length = 210
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 64/215 (29%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F TLQGEG H G+ A F R GC++ C +CD T
Sbjct: 15 MLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPTLH 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ Q+A+ T K + VLTGGEPL+ L L + G I +ET+G
Sbjct: 63 PLMSAVQIAE-------TAAKHCKTIVLTGGEPLMWNLEILTSRLKELGCTIHIETSGAY 115
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDF-ERFSLQP 175
+DWI +SPK D ELK++ + + E R LQ
Sbjct: 116 PMSGHLDWITLSPKKTGLPKDQIYAKAHELKVIVFNNNDLKFAAEQAAKVSPTCRLYLQ- 174
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ EE + NP+W+ SVQTHK++ I
Sbjct: 175 SEWSKREEIYPKITDFILANPEWQASVQTHKYLNI 209
>gi|318040803|ref|ZP_07972759.1| putative organic radical activating protein [Synechococcus sp.
CB0101]
Length = 216
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 88/222 (39%), Gaps = 31/222 (13%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG H+GR A F R GC S C +CDT Q
Sbjct: 12 LPVVETFHSLQGEGLHSGRSAWFIRLGGC-----------SVGCSWCDTKHSWPQ----D 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ + L L +E + V+TGGEPL PL +AL G + +ET+G
Sbjct: 57 VHPLQSLEALQQEAQSAVANGAAFVVITGGEPLEHHLAPLCEALQPFGVPLHLETSGVGA 116
Query: 124 PPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVNVSPE-----------NYIGFDFE 169
WI +SPK + ELK+V +
Sbjct: 117 FTGAFAWITLSPKPHRPPTPEVLAACHELKVVVHEAADLAFAEAMAAASLNGRNNDQPAP 176
Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP LAI Y +P WRLS+Q+HK++G+R
Sbjct: 177 ALLLQPGWQST--TGQQLAIDYVRSHPSWRLSLQSHKWLGVR 216
>gi|116071889|ref|ZP_01469157.1| possible organic radical activating enzyme [Synechococcus sp.
BL107]
gi|116065512|gb|EAU71270.1| possible organic radical activating enzyme [Synechococcus sp.
BL107]
Length = 205
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 25/215 (11%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F +LQGEG H GR A F R +GCN+ C +CDT
Sbjct: 8 PVVETFHSLQGEGHHCGRSAFFIRLAGCNV-----------GCAWCDTKH----SWPMAS 52
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIE 123
+ + L + + + V+TGGEPL PL AL++ G I +ET+G +
Sbjct: 53 HAKQDVDGLARQARQAKDAGAAFVVITGGEPLHHNLQPLTDALDRICGLPIHLETSGVDQ 112
Query: 124 PPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFD----FERFSLQPM 176
DW+ +SPK + ELK+V + + + +QP+
Sbjct: 113 LSGRFDWVTLSPKRHRPPQQALLSRCDELKVVVLDTDDVSFAHAMANDTSTATHLLVQPV 172
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E +LAI + Q+P+WRLS+Q+HKF+ IR
Sbjct: 173 W--DSETAQDLAIHHVQQHPRWRLSLQSHKFLQIR 205
>gi|300775377|ref|ZP_07085239.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Chryseobacterium gleum ATCC 35910]
gi|300506117|gb|EFK37253.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Chryseobacterium gleum ATCC 35910]
Length = 209
Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K+ + E F TLQGEG H G+ A F R GC++ C +CD
Sbjct: 13 KMLPVMEHFYTLQGEGAHTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPEL 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
N +++A+ + VLTGGEPL+ L L + G I +ET+G
Sbjct: 61 HPLMNAEEIAETAAR-------HCKTIVLTGGEPLMWNLDILTSKLKELGCTIHIETSGA 113
Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQ 174
+DWI +SPK + + ELK++ + E + + LQ
Sbjct: 114 YPMSGHLDWITLSPKKTGLPKEEIYQKANELKVIIFNHHDFTFAQEQAAKVSENCKLYLQ 173
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + + ++P+W+ SVQTHK++ I
Sbjct: 174 -SEWSKRNDMYPKITDFILEHPEWQASVQTHKYLNI 208
>gi|256819499|ref|YP_003140778.1| Radical SAM domain-containing protein [Capnocytophaga ochracea DSM
7271]
gi|256581082|gb|ACU92217.1| Radical SAM domain protein [Capnocytophaga ochracea DSM 7271]
Length = 210
Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L + E F TLQGEG + G A F R GC++ C +CD + +
Sbjct: 15 LLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + ++ E + ++TGGEPL+ L + L G +ET+G
Sbjct: 60 EAHPLVPVDTIVAEAL----AHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGAH 115
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
DWIC+SP K ++ ELK+V + E LQP
Sbjct: 116 PLSGSWDWICLSPKKIKRPVGDVLQKANELKMVIYNNHDFIFAEEMAAQVSPECLLYLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ E + Y +P+W+ S+Q HK++ IR
Sbjct: 176 -EWSKRAEVMPKIVDYVMAHPQWKASLQMHKYLDIR 210
>gi|315224929|ref|ZP_07866748.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Capnocytophaga ochracea F0287]
gi|314945042|gb|EFS97072.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Capnocytophaga ochracea F0287]
Length = 210
Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L + E F TLQGEG + G A F R GC++ C +CD + +
Sbjct: 15 LLPLMEAFYTLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWQA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + ++ E + ++TGGEPL+ L + L G +ET+G
Sbjct: 60 EAHPLVPVDTIVAEAL----AHSKTIIITGGEPLMWNLTLLTEKLRAGGARTHIETSGAH 115
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQP 175
DWIC+SP K ++ ELK+V + E LQP
Sbjct: 116 PLSGTWDWICLSPKKIKRPVGDVLQKANELKMVIYNNHDFIFAEEIAAQVSPECLLYLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ E + Y +P+W+ S+Q HK++ IR
Sbjct: 176 -EWSKRAEVMPKIVDYVMAHPQWKASLQMHKYLDIR 210
>gi|88809463|ref|ZP_01124971.1| possible organic radical activating enzyme [Synechococcus sp. WH
7805]
gi|88786682|gb|EAR17841.1| possible organic radical activating enzyme [Synechococcus sp. WH
7805]
Length = 208
Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R +GC C +CDT
Sbjct: 11 LPVVETFHSLQGEGLHAGRSAFFIRLAGC-----------RVGCSWCDTKH----SWPAD 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETNGTI 122
+ + + L E + V+TGGEPL L QAL R + +ET+G
Sbjct: 56 SHPLRPIDSLATEAAAAASDGAAFVVITGGEPLHHNLDALAQALRSLRSLPLHLETSGVD 115
Query: 123 EPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQPM 176
DWI +SPK + + ELK+V + ++ + + + + LQP
Sbjct: 116 PLSGDPDWITLSPKRHAPPRAELLRRCHELKVVVHEPADLLFADVVAAQAPQATWLLQP- 174
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
G E LA+ ++ +WRLS+Q+HK++G+R
Sbjct: 175 -GWESAEGQQLALDAARRDGRWRLSLQSHKWLGVR 208
>gi|77360060|ref|YP_339635.1| queC protein [Pseudoalteromonas haloplanktis TAC125]
gi|76874971|emb|CAI86192.1| queC protein [Pseudoalteromonas haloplanktis TAC125]
Length = 215
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 40/228 (17%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------QG 59
+F T+QGE + G ++F R GC + C +CDT
Sbjct: 1 MFETIQGEASYTGTPSIFLRLQGCPV-----------GCSWCDTKQTWDVDNVYKVSLDE 49
Query: 60 TKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
T + + D A I + + ++ V+TGGEP + P+ L++ GF
Sbjct: 50 TVEKKADSDHWAQASAANILALFQSRGYTAKHVVITGGEPCMYDLNPVCNLLHENGFSTQ 109
Query: 116 VETNGTIEP-PQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVSPENYIGF- 166
+ET+GT E W+ VSPK ++ E+K E F
Sbjct: 110 IETSGTFEILAPAQTWVTVSPKINMRGGFEVLTTAMQRANEIKHPVAMQKHVEELEELFV 169
Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + LQP+ E T LAI C WRLS+Q HK++GI
Sbjct: 170 KTGVNPKLVYLQPISQK--ESATKLAIKTCIAK-NWRLSIQVHKYLGI 214
>gi|116074183|ref|ZP_01471445.1| possible organic radical activating enzyme [Synechococcus sp.
RS9916]
gi|116069488|gb|EAU75240.1| possible organic radical activating enzyme [Synechococcus sp.
RS9916]
Length = 202
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 67/215 (31%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R +GCN+ C +CDT Q +
Sbjct: 5 LPVVETFHSLQGEGLHAGRSAFFIRLAGCNV-----------GCSWCDTKHSWPQSS--- 50
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG-FEIAVETNGTI 122
+ + + L E G+ + V+TGGEPL L A+ I +ET+G
Sbjct: 51 -HPLQSVDSLAAEAAAAGQAGAAFVVITGGEPLHHNLDGLTGAIRTACTLPIHIETSGVD 109
Query: 123 EPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVN---VSPENYIGFDFERFSLQPM 176
DWI +SPK + + ELK+V + N + + LQP
Sbjct: 110 PLSGTPDWITLSPKRHSPPRAEVLRACHELKVVVHEPNDLLFAEVAASQAPQASWLLQP- 168
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
G E+ LAI+Y +P+WRLS+Q+HK++ +R
Sbjct: 169 -GWQSEKGQQLAINYAQHHPRWRLSLQSHKWLQVR 202
>gi|313157136|gb|EFR56566.1| radical SAM domain protein [Alistipes sp. HGB5]
Length = 211
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 26/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+L + E F T+QGEG HAG+ A F R GC++ CR+CD +
Sbjct: 14 RLLPLVEDFYTIQGEGFHAGKPAYFIRLGGCDV-----------GCRWCDAKYTW----N 58
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
Y + +I+ + V+TGGEPLL L + L+++G +I +ET+GT
Sbjct: 59 PKLYPPTDVRTVIDRALAC---PAQAIVITGGEPLLYPLGVLTETLHEKGLQIFLETSGT 115
Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFP-QVNVSPENYIGFD---FERFSLQ 174
DW+C+SPK D ++ ELK++ + + LQ
Sbjct: 116 HPFSGYFDWVCLSPKRQQPPLDEALERAHELKVIVESESDFEWAERNAARVRPECMLYLQ 175
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + E + Y +PKW +S+QTHK++ I
Sbjct: 176 P-EWSVAERVMPAMVEYAKAHPKWNISIQTHKYMHI 210
>gi|258621538|ref|ZP_05716571.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258586156|gb|EEW10872.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 216
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 90/230 (39%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----------- 57
+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESDQTSFPQ 49
Query: 58 ---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
+ + + D+IE G + ++ V+TGGEP + L QA G +
Sbjct: 50 ILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQC 108
Query: 115 AVETNGTIEPPQGI-DWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
+ET+GT E W+ VSPK K+ E+K V + ++ + +
Sbjct: 109 QIETSGTYEILATPTTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATENDIDKLDELL 168
Query: 166 FDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 VRASVDAKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215
>gi|262192386|ref|ZP_06050539.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT
5369-93]
gi|262031739|gb|EEY50324.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae CT
5369-93]
Length = 216
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----------- 57
+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49
Query: 58 ---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
+ + + ++++ + ++ V+TGGEP + L QA G
Sbjct: 50 ILLKTSDAPTWCQASAQEVVQRY-QAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRC 108
Query: 115 AVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
+ET+GT E W+ VSPK K+ E+K V + ++ + +
Sbjct: 109 QIETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELL 168
Query: 166 FDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 ARAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215
>gi|148982371|ref|ZP_01816736.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3]
gi|145960507|gb|EDK25873.1| organic radical activating enzyme [Vibrionales bacterium SWAT-3]
Length = 216
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 92/230 (40%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ ++ ++ E G ++ V+TGGEP + VPL +A K G
Sbjct: 50 IMVKTEDSPTWSSIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEKHGCRC 108
Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLV------FPQVNVSP 160
+ET+GT E D W+ VSPK K++ E+K Q++
Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLEILDSALQRANEIKHPVGTSKDIEQLDGLL 168
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E D +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 169 ERAEVSDDTVIALQPISQKD--RATKLCIDTCIER-NWRLSIQTHKYLSI 215
>gi|84387075|ref|ZP_00990098.1| Organic radical activating enzyme [Vibrio splendidus 12B01]
gi|84378150|gb|EAP95010.1| Organic radical activating enzyme [Vibrio splendidus 12B01]
Length = 216
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ ++ ++ E G ++ V+TGGEP + VPL +A + G
Sbjct: 50 IMVKTEDSPTWSAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEQHGCRC 108
Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLV------FPQVNVSP 160
+ET+GT E D W+ VSPK K+ E+K Q++
Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLDALI 168
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ E T L I C + WRLS+QTHK++ I
Sbjct: 169 ARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215
>gi|86145928|ref|ZP_01064256.1| Organic radical activating enzyme [Vibrio sp. MED222]
gi|85836383|gb|EAQ54513.1| Organic radical activating enzyme [Vibrio sp. MED222]
Length = 216
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQICPV-----------GCSWCDTKQTWEALPEDETSLGD 49
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ + ++ E G ++ V+TGGEP + VPL +A + G
Sbjct: 50 IMVKTEDSPTWTAIDAQGIVNEYIKQG-YTAKHIVITGGEPCIYDLVPLTEAFEQHGCRC 108
Query: 115 AVETNGTIEPPQGID-WICVSPKAGCDLKIK-------GGQELKLV------FPQVNVSP 160
+ET+GT E D W+ VSPK K+ E+K Q++V
Sbjct: 109 QIETSGTSEVKATPDTWVTVSPKVAMKAKLDILDSALVRANEIKHPVGTGKDIEQLDVLI 168
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ E T L I C + WRLS+QTHK++ I
Sbjct: 169 ARADVPENTVIALQPISQK--ERATQLCIDTCIER-NWRLSIQTHKYLSI 215
>gi|325954686|ref|YP_004238346.1| radical SAM protein [Weeksella virosa DSM 16922]
gi|323437304|gb|ADX67768.1| Radical SAM domain protein [Weeksella virosa DSM 16922]
Length = 215
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+L + E F TLQGEG +AG A F R GC++ C +CD +
Sbjct: 19 RLLPVMEHFYTLQGEGAYAGVAAYFIRLGGCDV-----------GCHWCDVK----ESWD 63
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + +A L +E + ++TGGEPL+ L L+K G I +ET+G
Sbjct: 64 AEIHPLTDIATLAKEAAAI----CKTIIITGGEPLMWDLTFLTSELHKHGANIHIETSGA 119
Query: 122 IEPPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVN---VSPENYIGF-DFERFSLQ 174
IDW+ +SPK + + ELK++ + + E D LQ
Sbjct: 120 YPLTGEIDWVTLSPKKTKLPVESIYQQANELKMIIYNQHDFTFAEEQAAKVKDNCLLYLQ 179
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ + + + + QNPKWR++VQTHK++ I
Sbjct: 180 -VEWSKRDSMSPKLVEFIKQNPKWRITVQTHKYLDI 214
>gi|258627553|ref|ZP_05722330.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580135|gb|EEW05107.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 216
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----------- 57
+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLESDQTSFPQ 49
Query: 58 ---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
+ + + D+IE G + ++ V+TGGEP + L QA G +
Sbjct: 50 ILLKTSDAPTWCQASAQDVIERYRAQG-YQAKHIVITGGEPCIYDLTELTQAFEAIGCQC 108
Query: 115 AVETNGTIEPPQGI-DWICVSPKAGCDLK-------IKGGQELKL-VFPQVNVSPENYIG 165
+ET+GT E W+ VSPK K ++ E+K V + ++ + +
Sbjct: 109 QIETSGTYEILATPTTWVTVSPKVAMKGKLLILDSALQRANEIKHPVATEKDIDNLDELL 168
Query: 166 FDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ T L I C WRLS+QTHK++ I
Sbjct: 169 VRASVDTKTVIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215
>gi|218245972|ref|YP_002371343.1| hypothetical protein PCC8801_1116 [Cyanothece sp. PCC 8801]
gi|218166450|gb|ACK65187.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
Length = 205
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 27/215 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I E F ++QGEG G A F R +GC++ C +CD
Sbjct: 10 TYPIVETFHSIQGEGVWMGVNAFFIRLAGCDV-----------HCPWCDQKESW-PVQPY 57
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +++ L + + ++TGGEPL+ PL L G + +ET+G+
Sbjct: 58 PQQSLEALGEAAKRANPA------IVIITGGEPLMHNLDPLTAQLRGLGLRVHLETSGSH 111
Query: 123 EPPQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERF-SLQP 175
DW+ SPK + ELK+V + + + LQP
Sbjct: 112 PFSGQFDWVTFSPKPFKLPHESIYPQVDELKVVITSQEDLQWAEHQAAQVPLKTIKYLQP 171
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E+ L Y +P WR+S+Q HKF+G+
Sbjct: 172 EWN--TPESQQLIFDYVLHHPDWRISLQVHKFLGV 204
>gi|262169329|ref|ZP_06037021.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27]
gi|262022142|gb|EEY40851.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae RC27]
gi|327484035|gb|AEA78442.1| Queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae LMA3894-4]
Length = 216
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 41/229 (17%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---------- 58
+F T+QGEG G AVF R GC + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49
Query: 59 ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
T A + +++ + ++ V+TGGEP + L QA G
Sbjct: 50 ILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQ 109
Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166
+ET+GT E W+ VSPK K+ E+K V + ++ + +
Sbjct: 110 IETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLA 169
Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 170 RAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215
>gi|123969432|ref|YP_001010290.1| putative organic radical activating protein [Prochlorococcus
marinus str. AS9601]
gi|123199542|gb|ABM71183.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. AS9601]
Length = 225
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 99/241 (41%), Gaps = 48/241 (19%)
Query: 1 MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
MK+ + E F +LQGEG HAG+ A F R +GC C +CDT
Sbjct: 1 MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTK---- 45
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------R 110
++ + +I+ I +K +CV+TGGEPL +A+ K +
Sbjct: 46 NSWDEKKHPSISIEKIIDRIKIARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQK 105
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL--------------------K 150
+I +ET+G DWI +SPK K + K
Sbjct: 106 PIKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKK 165
Query: 151 LVFPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
Q +S E+ + + + F LQP +LAI + NP W+LS+QTHK++
Sbjct: 166 ETLKQHQLSKGEDGLKKEDKIFYLQPAWN--NANGFSLAIDFVKNNPDWKLSLQTHKYLK 223
Query: 210 I 210
I
Sbjct: 224 I 224
>gi|282859352|ref|ZP_06268460.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
gi|282587837|gb|EFB93034.1| radical SAM domain protein [Prevotella bivia JCVIHMP010]
Length = 194
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 80/214 (37%), Positives = 105/214 (49%), Gaps = 28/214 (13%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF ++QGEG +AG A+F RF+ CNL C FCDTDFV R
Sbjct: 2 KINEIFYSIQGEGFYAGTPAIFVRFAQCNLN-----------CAFCDTDFV--------R 42
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
+ +++ E G + +LTGGEP LQV L L++ G I +ETNGT
Sbjct: 43 FTEMTEEEIVAEVCRIGN-PATHVILTGGEPSLQVTASLCDKLHEAGKVIHIETNGTHAV 101
Query: 125 PQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
+GID+I SPK +L ++ ELK+VF N Y + + LQP D
Sbjct: 102 AEGIDFITCSPKLEYCKHAELCVQRIDELKVVFTGKN-DMALYENIQAQHYFLQPCDVGN 160
Query: 181 LEEN---TNLAISYCFQNPKWRLSVQTHKFIGIR 211
EN + YC NPKW +SVQ HK + IR
Sbjct: 161 DAENGRIIAATVGYCKANPKWNISVQIHKVLAIR 194
>gi|87123419|ref|ZP_01079270.1| possible organic radical activating enzyme [Synechococcus sp.
RS9917]
gi|86169139|gb|EAQ70395.1| possible organic radical activating enzyme [Synechococcus sp.
RS9917]
Length = 202
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 24/216 (11%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ E F +LQGEG HAGR A F R GC++ C +CDT
Sbjct: 4 TLPVVETFHSLQGEGLHAGRSAFFIRLGGCDV-----------GCSWCDTKH----SWPA 48
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGT 121
+ + L + VLTGGEPL L A+ + + +ET+G
Sbjct: 49 EAHPKRSVDSLAAATAEAAHAGAAFVVLTGGEPLHHQLDALTAAIRRICSLPVHLETSGV 108
Query: 122 IEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQ-VNVSPENYIGFDFER--FSLQP 175
DW+ +SPK + + ELK+V + ++ + + + LQP
Sbjct: 109 DPLSGAPDWVTLSPKRHRPPRAEVLQACDELKVVVHEPADLLFAEVVATQAPQATWLLQP 168
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
G E LA NP+WRLS+Q+HK++G+R
Sbjct: 169 --GWSSEAGQELATDMVRGNPRWRLSLQSHKWLGVR 202
>gi|228469718|ref|ZP_04054686.1| organic radical activating enzyme [Porphyromonas uenonis 60-3]
gi|228308737|gb|EEK17463.1| organic radical activating enzyme [Porphyromonas uenonis 60-3]
Length = 201
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G
Sbjct: 1 MQSLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNL-----------ACDYCDTDFAG---- 45
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
V ++ +E R + TGGEP L + I +++G+ ++ETNG
Sbjct: 46 -HRLMTVAEILAKLE------SYPCRDILWTGGEPTLALREEHIAFFHEQGYRQSIETNG 98
Query: 121 TIEPPQGIDWICVSPKAG---------CDLKIKGGQELKLVFP-QVNVSPENYIGFDFER 170
T P+G+D++ SPKA D G E++ + P R
Sbjct: 99 TRPVPRGLDYVTCSPKAEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLVQARR 158
Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ + P++ G + + + +P+WRLSVQ HK +G R
Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201
>gi|213963236|ref|ZP_03391493.1| radical SAM domain protein [Capnocytophaga sputigena Capno]
gi|213954098|gb|EEB65423.1| radical SAM domain protein [Capnocytophaga sputigena Capno]
Length = 210
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 27/216 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E F +LQGEG + G A F R GC++ C +CD +
Sbjct: 15 ILPLMEAFYSLQGEGFYKGTAAYFIRLGGCDV-----------GCHWCDVK----ESWAA 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + ++ + + ++TGGEPL+ L Q L G +ET+G
Sbjct: 60 EAHPLVPVDTIVTDAL----AHSKTMIITGGEPLMWNLDLLTQKLRAAGARTHIETSGAH 115
Query: 123 EPPQGIDWICVSP---KAGCDLKIKGGQELKLV-FPQVNVSPENYIGFDF---ERFSLQP 175
DWIC+SP K ++ ELK+V + + + LQP
Sbjct: 116 PLSGTFDWICLSPKKIKRPVGDVLQKANELKMVIYNNNDFLFAEEMAAQVSPDCLLYLQP 175
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ + + Y +P+W+ S+Q HK++ IR
Sbjct: 176 -EWSKRNKVIPKIVDYVMAHPQWKASLQMHKYLDIR 210
>gi|313206128|ref|YP_004045305.1| radical sam domain protein [Riemerella anatipestifer DSM 15868]
gi|312445444|gb|ADQ81799.1| Radical SAM domain protein [Riemerella anatipestifer DSM 15868]
gi|315022935|gb|EFT35958.1| Queuosine Biosynthesis QueE Radical SAM [Riemerella anatipestifer
RA-YM]
Length = 209
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 27/213 (12%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F T+QGEG + G+ A F R GC++ C +CD
Sbjct: 16 PVMEHFYTIQGEGAYTGKAAYFIRLGGCDV-----------GCHWCDVKESW-DPNLHPL 63
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
+ +++A + + VLTGGEPL+ L + L G I +ET+G E
Sbjct: 64 MDAEEVAQIAA-------NHSKTIVLTGGEPLMWNLEILTKKLKDLGCTIHIETSGAYEI 116
Query: 125 PQGIDWICVSPKA---GCDLKIKGGQELKLVF---PQVNVSPENYIGF-DFERFSLQPMD 177
IDW+C+SPK + ELK++ + E +F LQ +
Sbjct: 117 SGHIDWVCLSPKKTGLPKESIYAKANELKVIIFNNHDFKFAEEQASKVSQNCKFYLQ-SE 175
Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+E Y +NPKW+ SVQTHK++ I
Sbjct: 176 WSKRDEMYPKITDYILENPKWQASVQTHKYLNI 208
>gi|91224504|ref|ZP_01259766.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01]
gi|91190846|gb|EAS77113.1| hypothetical protein V12G01_17742 [Vibrio alginolyticus 12G01]
Length = 216
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 60/230 (26%), Positives = 88/230 (38%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYADENDQRQIGD 49
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ + V +++E+ G ++ V+TGGEP + PL +A G +
Sbjct: 50 ILVKTEDSPTWCVASAENIVEQYQQQG-FNAKHIVITGGEPCIYDLRPLTKAFEDMGCQC 108
Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLV------FPQVNVSP 160
+ET+GT E W+ VSPK K+ E+K ++
Sbjct: 109 QIETSGTSEVITSENTWVTVSPKVAMKGKLPVLNSALERANEIKHPVGTQKDIDHLDDLL 168
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
N +LQP+ T L I C WRLSVQTHK++ I
Sbjct: 169 ANANVAAETIIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215
>gi|238791241|ref|ZP_04634880.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC
29909]
gi|238729374|gb|EEQ20889.1| hypothetical protein yinte0001_29930 [Yersinia intermedia ATCC
29909]
Length = 216
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 88/233 (37%), Gaps = 49/233 (21%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI----------- 57
+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MFQTLQGEGYFTGVPAIFVRLQGCPV-----------GCSWCDTKHTWEKEADREVDMQR 49
Query: 58 ------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
+ G + QL D+ +Q R+ V+TGGEP + PL L + G
Sbjct: 50 IMVKTAESDAWGEASAQQLLDIFSQQG----YTARHVVITGGEPAIYDLFPLTSLLEQAG 105
Query: 112 FEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV------FPQVN 157
+ +ET+GT + W+ VSPK ++ E+K +
Sbjct: 106 YSCQIETSGTHDVRCSATTWVTVSPKVNMRGGLKVLPQALQRADEIKHPVGRMRDIEALE 165
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
V +LQP+ + T L I C WRLS+QTHK++ I
Sbjct: 166 VLLATLDDDKKRIIALQPISQKD--DATKLCIETCIAK-NWRLSMQTHKYLNI 215
>gi|167754369|ref|ZP_02426496.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216]
gi|167658994|gb|EDS03124.1| hypothetical protein ALIPUT_02663 [Alistipes putredinis DSM 17216]
Length = 194
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGEG + G A+F R +GCNL +C FCDT+
Sbjct: 2 RVNEIFYSIQGEGRYTGTPAIFIRLAGCNL-----------RCDFCDTEH-----QPYQD 45
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+++ I + + V+TGGEP+LQ+ + + N G + VETNGTI
Sbjct: 46 LTEEEIMRQI------ADFPTSHVVITGGEPMLQITQSLIHRLRNGAGKFVQVETNGTIP 99
Query: 124 PPQ--GIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+DWI SPK +L+++ ELK+V+ +++ + G + + + LQP D
Sbjct: 100 IKCYLPVDWITCSPKFDFCPHAELRLQRIDELKVVYQGQDMTAYD--GIEAKEYYLQPCD 157
Query: 178 GPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
EN I+Y +PKW+LS+QT K + +R
Sbjct: 158 FKDEARNAENLAATINYIKSHPKWKLSLQTQKILSVR 194
>gi|148240798|ref|YP_001226185.1| organic radical activating protein [Synechococcus sp. WH 7803]
gi|147849337|emb|CAK24888.1| Organic radical activating enzyme [Synechococcus sp. WH 7803]
Length = 208
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R +GC S C +CDT
Sbjct: 11 LPVVETFHSLQGEGLHAGRSAFFIRLAGC-----------SVGCSWCDTKH----SWPAE 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
+ L + E + V+TGGEPL L Q L K G + +ET+G
Sbjct: 56 SHPARTLHSIATEAAAAASDGAAFVVITGGEPLHHNLDALAQTLRKICGLPLHLETSGVD 115
Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQ-VNVSPENYIGFDFER--FSLQPM 176
DWI +SPK + + ELK+V + ++ + + + LQP
Sbjct: 116 PLSGNPDWITLSPKRHAPPRAELLSRCHELKVVVHEPADLLFAEVLSAQAPQAAWLLQP- 174
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
G E LA+ ++ +WRLS+Q+HK++G+R
Sbjct: 175 -GWESVEGQQLALDAARRDGRWRLSLQSHKWLGVR 208
>gi|159904363|ref|YP_001551707.1| putative organic radical activating protein [Prochlorococcus
marinus str. MIT 9211]
gi|159889539|gb|ABX09753.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. MIT 9211]
Length = 226
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 96/240 (40%), Gaps = 48/240 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ E F ++QGEG HAGR A F R + CN+ C +CDT +
Sbjct: 3 TTLPVVESFHSIQGEGAHAGRSAFFIRLAQCNV-----------GCEWCDTK----ESWS 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KRGFEI 114
+ + L++E I K + V+TGGEPL PL A+ I
Sbjct: 48 SISHPKKTIDSLVQETTIAKSKGASFLVITGGEPLHHNLNPLCNAIKNNINSCGDNAIPI 107
Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFP-QVNVSPENYIGFDFER 170
+ET+G DWI +SPK K + QE+K++ + ++ +
Sbjct: 108 HLETSGVHHMSGAPDWITLSPKRHFPPKEELLEACQEIKVIIHSKEDILFAEEMAHRSIH 167
Query: 171 --------------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
LQP G LAI Y +NP+WRLS+QTHK++ I
Sbjct: 168 AKKNAYKSRVSTKQSLIKPLLFLQPGWGH--SMGQKLAIEYVIKNPQWRLSLQTHKWLAI 225
>gi|91070512|gb|ABE11419.1| putative organic radical activating enzyme [uncultured
Prochlorococcus marinus clone HOT0M-3E5]
Length = 225
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 63/241 (26%), Positives = 97/241 (40%), Gaps = 48/241 (19%)
Query: 1 MKL---YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
MK+ + E F +LQGEG HAG+ A F R +GC C +CDT
Sbjct: 1 MKMTNFLPLVEQFHSLQGEGYHAGKSAFFIRLAGC-----------KVGCSWCDTK---- 45
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------R 110
++ + +I+ I +K +CV+TGGEPL +A+ K +
Sbjct: 46 NSWDEKKHPSISIEKIIDRIKIARKKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEEQK 105
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK---------------------GGQEL 149
+I +ET+G DWI +SPK K +
Sbjct: 106 PMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEIEDIEFAIQIKN 165
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ + E+ + + + F LQP +LAI + NP W+LS+QTHK++
Sbjct: 166 ETLKQYQISKSEDGLKKEDKIFYLQPAWN--NANGFSLAIDFVKNNPDWKLSLQTHKYLK 223
Query: 210 I 210
I
Sbjct: 224 I 224
>gi|332177919|gb|AEE13609.1| Radical SAM domain protein [Porphyromonas asaccharolytica DSM
20707]
Length = 201
Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 34/223 (15%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G
Sbjct: 1 MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNLT-----------CDYCDTDFAG---- 45
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + ++++ + G R + TGGEP L + I ++ G+ ++ETNG
Sbjct: 46 ----HQLMTASEILAQL---GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98
Query: 121 TIEPPQGIDWICVSPKAG---------CDLKIKGGQELKLVFP-QVNVSPENYIGFDFER 170
T PQG+D++ SPK D G E++ + P + R
Sbjct: 99 TRPMPQGLDYVTCSPKPEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLAEARR 158
Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ + P++ G + + + +P+WRLSVQ HK +G R
Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201
>gi|260778537|ref|ZP_05887429.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus
ATCC BAA-450]
gi|260604701|gb|EEX30996.1| queuosine Biosynthesis QueE Radical SAM [Vibrio coralliilyticus
ATCC BAA-450]
Length = 216
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 61/229 (26%), Positives = 88/229 (38%), Gaps = 41/229 (17%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
+F T+QGEG G +VF R C + C +CDT + R +
Sbjct: 1 MFETIQGEGVFTGVPSVFVRLQICPV-----------GCAWCDTKQTWDATPQDERPLAE 49
Query: 69 QLADL-------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
LA I EQ+ + ++ V+TGGEP + PL +A G
Sbjct: 50 VLAKTEDSPTWCSVSGGDIIEQYRQQGYQAKHIVITGGEPCIYDLRPLTEAFEAIGCRCQ 109
Query: 116 VETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKLV------FPQVNVSPE 161
+ET+GT W+ VSPK K+ E+K Q++ E
Sbjct: 110 IETSGTSPILASENTWVTVSPKVAMKGKLPVLDCALLRANEIKHPVATDKDIEQLDALIE 169
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 170 RAGVPESTTIALQPISQK--PRATQLCIDTCIAR-NWRLSIQTHKYLSI 215
>gi|313886424|ref|ZP_07820143.1| radical SAM domain protein [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924105|gb|EFR34895.1| radical SAM domain protein [Porphyromonas asaccharolytica
PR426713P-I]
Length = 201
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 34/223 (15%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M+ + EIF +LQGEGG GR +F R SGCNL C +CDTDF G
Sbjct: 1 MQPLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNLT-----------CDYCDTDFAG---- 45
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + ++++ + G R + TGGEP L + I ++ G+ ++ETNG
Sbjct: 46 ----HQLMTASEILAQL---GSYPCRDILWTGGEPTLALREEHIAFFHEHGYRQSIETNG 98
Query: 121 TIEPPQGIDWICVSPKAG---------CDLKIKGGQELKLVFP-QVNVSPENYIGFDFER 170
T PQG+D++ SPK D G E++ + P + R
Sbjct: 99 TRPVPQGLDYVTCSPKPEAISGLRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLVEARR 158
Query: 171 FSLQPMD--GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ + P++ G + + + +P+WRLSVQ HK +G R
Sbjct: 159 YYVSPVEETGVEMSAVVARCMDFVLAHPEWRLSVQLHKLLGFR 201
>gi|229497033|ref|ZP_04390738.1| NrdG protein [Porphyromonas endodontalis ATCC 35406]
gi|229316135|gb|EEN82063.1| NrdG protein [Porphyromonas endodontalis ATCC 35406]
Length = 212
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 90/219 (41%), Gaps = 33/219 (15%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGEG G VF R S CNL +C +CDTDF
Sbjct: 16 LPVNEIFYSLQGEGAQVGLPMVFIRLSSCNL-----------RCSYCDTDFSS------- 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ L ++ E + TGGEP L + ++ +++G+ ++ETNGT
Sbjct: 58 -FTPMSLEAIVAEL---ASFPTHNILWTGGEPTLHLTEEVVGFFHQKGYRQSIETNGTRP 113
Query: 124 PPQGIDWICVSPKAGCDLK-----IKGGQELKLVF-PQVNVSPENYIGFDFERFSLQPMD 177
P+GID+I S K G E + F + P + L P+
Sbjct: 114 VPRGIDYITCSAKPESFPHLWENFPHGVDEWRFPFGASAPLPPAIESLPPARTYCLSPIY 173
Query: 178 GPFL-----EENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
P I Y Q+P WRLS+Q HK IGI+
Sbjct: 174 EPGEAILQPPHALEECIEYIKQHPTWRLSIQLHKIIGIQ 212
>gi|126697219|ref|YP_001092105.1| putative organic radical activating protein [Prochlorococcus
marinus str. MIT 9301]
gi|126544262|gb|ABO18504.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. MIT 9301]
Length = 223
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 96/237 (40%), Gaps = 45/237 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ E F +LQGEG HAG+ A F R +GC C +CDT
Sbjct: 3 NFLPLVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTK----NSWD 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEI 114
+Y + +I+ I EK +CV+TGGEPL +A+ K + +I
Sbjct: 48 EKKYPSISIEKIIDRIKIAREKGASFCVITGGEPLQHNLDNFCKAIKKMTMGEELKPMKI 107
Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL--------------------KLVFP 154
+ET+G DWI +SPK K + K
Sbjct: 108 HIETSGVNSISGSYDWITLSPKRHSPPKSYFLKNCNEIKIIINEIEDIEFAIQIKKETLK 167
Query: 155 QVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
Q + S E+ + + + F LQP +LAI + NP W+LS+QTHK++ I
Sbjct: 168 QYHPSKSEDGLKKEDKIFYLQPAWN--NANGFSLAIDFVKNNPDWKLSLQTHKYLKI 222
>gi|260435246|ref|ZP_05789216.1| organic radical activating enzyme [Synechococcus sp. WH 8109]
gi|260413120|gb|EEX06416.1| organic radical activating enzyme [Synechococcus sp. WH 8109]
Length = 205
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F +LQGEG HAGR A F R +GC + C +CDT
Sbjct: 5 QRLPVVETFHSLQGEGRHAGRSAFFIRLAGC-----------TVGCSWCDTKH----SWP 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
+ + L + E + V+TGGEPL PL QAL+ R G + +ET+G
Sbjct: 50 SQGHAEQPIGALASAAQMAAEAGASFVVITGGEPLHHNLQPLTQALDARCGLPLHLETSG 109
Query: 121 TIEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-----VSPENYIGFDFERFS 172
DWI +SPK + + ELK+V + + D ER
Sbjct: 110 VDPLTGRFDWITLSPKRHRPPRQELLQACHELKVVVHGPEDISFAAAMASQCEDDTERL- 168
Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP + E LA+ + ++P+WRLS+Q+HK++GIR
Sbjct: 169 LQPGWESSIGE--ELALDHVRKHPQWRLSLQSHKWLGIR 205
>gi|148243542|ref|YP_001228699.1| organic radical activating protein [Synechococcus sp. RCC307]
gi|147851852|emb|CAK29346.1| Organic radical activating enzyme [Synechococcus sp. RCC307]
Length = 202
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 63/219 (28%), Positives = 89/219 (40%), Gaps = 25/219 (11%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + E F +LQGEG HAGR A F R GC + C +CDT Q
Sbjct: 1 MSSLPVVETFHSLQGEGLHAGRSAFFIRLGGC-----------TVGCSWCDTKHSWPQTA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVET 118
+ + L E ++ + V+TGGEPL QAL +ET
Sbjct: 50 ----HPALETQALAAEAAEAQQQGAAFVVITGGEPLHHNLDGFCQALAEMAPTLPRHLET 105
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFP---QVNVSPENYIGFDFERFS 172
+G WI +SPKA + ELK V + + +
Sbjct: 106 SGVDPLSGSFSWITLSPKAHKPPTQELLACCDELKAVVHGPEDLAFAEAMAAQAPQAHWL 165
Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP G + LA+ + +P WRLS+Q+HK++G+R
Sbjct: 166 LQP--GWDSPQGQQLAVEFVRNHPLWRLSLQSHKWLGVR 202
>gi|87300560|ref|ZP_01083402.1| possible organic radical activating enzyme [Synechococcus sp. WH
5701]
gi|87284431|gb|EAQ76383.1| possible organic radical activating enzyme [Synechococcus sp. WH
5701]
Length = 218
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R +GC S C +CDT
Sbjct: 8 LPVVETFHSLQGEGVHAGRSAFFIRLAGC-----------SVGCSWCDTKH----SWPAD 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK------RGFEIAVE 117
+ + + DL + + + V+TGGEPL PL +AL + + +E
Sbjct: 53 AHPLCRFQDLAASAALAAAEGAAFVVITGGEPLHHNLDPLCEALRQGSGAGPSPLPLHLE 112
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQ-VNVSPENYIGF------- 166
T+G +WI +SPK + ELK+V + +++ +
Sbjct: 113 TSGVDPLSGRFEWITLSPKRHRPPTAELLAACHELKVVIHEIADLAFAETMAAAVRSACP 172
Query: 167 ---DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ LQP G LA+ + +NP WRLS+Q+HK++G+R
Sbjct: 173 VKGALPQLLLQPGWGS--AAGQELAVQHVRRNPAWRLSLQSHKWLGVR 218
>gi|78214102|ref|YP_382881.1| organic radical activating protein [Synechococcus sp. CC9605]
gi|78198561|gb|ABB36326.1| possible organic radical activating enzyme [Synechococcus sp.
CC9605]
Length = 205
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 27/217 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R +GC + C +CDT
Sbjct: 7 LPVVETFHSLQGEGHHAGRSAFFIRLAGC-----------TVGCPWCDTKH----SWPSK 51
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
+ + L + + GE + V+TGGEPL PL QAL+ R G + +ET+G
Sbjct: 52 GHPEQPIDALADAAQMAGEVGAGFVVITGGEPLHHDLQPLTQALDARCGLPLHLETSGVD 111
Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN-----VSPENYIGFDFERFSLQ 174
DWI +SPK + + ELK+V + + D ER LQ
Sbjct: 112 PISGRFDWITLSPKRHRPPRQELLQACHELKVVVHGPEDISFAAAMASQCENDTERL-LQ 170
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
P G LA+ + Q+ +WRLS+Q+HK++ IR
Sbjct: 171 P--GWECSIGEALAVEHVRQHSRWRLSMQSHKWLRIR 205
>gi|157414296|ref|YP_001485162.1| putative organic radical activating protein [Prochlorococcus
marinus str. MIT 9215]
gi|157388871|gb|ABV51576.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. MIT 9215]
Length = 223
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 46/240 (19%)
Query: 1 MKLY-SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M Y I E F +LQGEG HAG+ A F R +GC C +CDT
Sbjct: 1 MTNYLPIVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTK----NS 45
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGF 112
+Y + +I+ I +K +CV+TGGEPL +A+ K
Sbjct: 46 WDEKKYPSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSM 105
Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL--------------------KLV 152
+I +ET+G DW+ +SPK K ++ K
Sbjct: 106 KIHIETSGVNSISGSYDWMTLSPKRHSPPKNYFLKKCNEIKIIINDIKDIEFAIQIKKET 165
Query: 153 FPQVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
Q +S E+ + + + F LQP +LAI + NP W+LS+QTHK++ I+
Sbjct: 166 LKQYQLSKSEDGLKKEDKIFYLQPAWN--NANGLSLAIDFVKNNPDWKLSLQTHKYLKIK 223
>gi|124026869|ref|YP_001015984.1| putative organic radical activating protein [Prochlorococcus
marinus str. NATL1A]
gi|123961937|gb|ABM76720.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. NATL1A]
Length = 213
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 67/225 (29%), Positives = 95/225 (42%), Gaps = 35/225 (15%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R + C C +CDT
Sbjct: 5 LPVVECFHSLQGEGEHAGRSAYFIRLASC-----------KVGCPWCDTK----DSWNSE 49
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KRGFEIAV 116
+ L DL + E+ + V+TGGEPL L + + K+ I +
Sbjct: 50 LHPQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPIHL 109
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVNV-----SPENYIGFDF 168
ET+G DWI +SPK ++ QELK+V + + I +
Sbjct: 110 ETSGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLVFAKTMADSIKNNG 169
Query: 169 E---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + LQ G EE LAI + NP WRLS+QTHK++G+
Sbjct: 170 KIKPQLFLQ--AGWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212
>gi|262195340|ref|YP_003266549.1| radical SAM protein [Haliangium ochraceum DSM 14365]
gi|262078687|gb|ACY14656.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
Length = 211
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 73/219 (33%), Positives = 101/219 (46%), Gaps = 29/219 (13%)
Query: 4 YSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y +KEIF TLQGEG HAGR VF RF+GCNL C +CDTDF
Sbjct: 9 YRVKEIFGPTLQGEGTHAGRACVFLRFAGCNLQ-----------CSWCDTDFS---PEGA 54
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
R D++ + + + R ++TGGEP LQ D L AL GF + +E+NGT
Sbjct: 55 ERLRADEITERLLALDV---HGARTVIVTGGEPALQWDQELADALRAAGFRVHMESNGTR 111
Query: 123 EPPQGIDWICVSPKAGCDLKIK--------GGQELKLVFPQV---NVSPENYIGFDFERF 171
P +DW+ VSPK + E KLV + ++
Sbjct: 112 PPRAPVDWLTVSPKVQFHGPREALFASAEAAVSECKLVVDDSVSHDTLAALEHHYEGADL 171
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
LQP E++ ++ + P+WRLS+Q HK +G+
Sbjct: 172 LLQPCMDADYEQHLARTLTLIGERPRWRLSLQLHKIVGV 210
>gi|72383130|ref|YP_292485.1| putative organic radical activating protein [Prochlorococcus
marinus str. NATL2A]
gi|72002980|gb|AAZ58782.1| possible organic radical activating enzyme [Prochlorococcus marinus
str. NATL2A]
Length = 213
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 67/225 (29%), Positives = 95/225 (42%), Gaps = 35/225 (15%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R + C C +CDT
Sbjct: 5 LPVVECFHSLQGEGEHAGRSAYFIRLASC-----------KVGCPWCDTK----DSWNSE 49
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN-------KRGFEIAV 116
+ L DL + E+ + V+TGGEPL L + + K+ I +
Sbjct: 50 LHPQQSLIDLSTQTAKAQEEGAAFVVITGGEPLHHNLDDLCKEIRKSTLNLEKKSIPIHL 109
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKG---GQELKLVFPQVNV-----SPENYIGFDF 168
ET+G DWI +SPK ++ QELK+V + + I +
Sbjct: 110 ETSGVDMLSGKPDWITLSPKRHSPPRLDNLLSCQELKVVIQNAEDLLFAKTMADSIKNNG 169
Query: 169 E---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + LQ G EE LAI + NP WRLS+QTHK++G+
Sbjct: 170 KIKPQLFLQ--AGWENEEGQTLAIKFVKNNPDWRLSMQTHKWLGV 212
>gi|113953027|ref|YP_732046.1| organic radical activating protein [Synechococcus sp. CC9311]
gi|113880378|gb|ABI45336.1| possible organic radical activating enzyme [Synechococcus sp.
CC9311]
Length = 202
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG H GR A F R +GC++ CR+CDT +
Sbjct: 5 LPVVETFHSLQGEGLHTGRSAFFIRLAGCDV-----------GCRWCDTKHSWPADSHPK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVETNGTI 122
R + DL E E + V+TGGEPL L A+ + + +ET+G
Sbjct: 54 RL----VKDLAIEATSAAETGAAFVVITGGEPLHHNLDELTAAIRSGCSQPVHLETSGVD 109
Query: 123 EPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQ-VNVSPENYIGFDFER--FSLQPM 176
DWI +SPK + + ELK+V + ++ + + + LQP
Sbjct: 110 RLSGAPDWITLSPKRHKPPRQDVVQACHELKVVVHEPADLLFAEVVAAQAPQANWLLQP- 168
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
G +E LA+ ++ +WRLS+Q+HK++G+R
Sbjct: 169 -GWDCKEGLQLAVGKVQKDQRWRLSMQSHKWLGVR 202
>gi|255745752|ref|ZP_05419700.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101]
gi|262158970|ref|ZP_06030082.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE
91/1]
gi|255736827|gb|EET92224.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholera CIRS 101]
gi|262029155|gb|EEY47807.1| queuosine Biosynthesis QueE Radical SAM [Vibrio cholerae INDRE
91/1]
Length = 216
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 87/229 (37%), Gaps = 41/229 (17%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---------- 58
+F +QGEG G AVF R GC + C +CDT
Sbjct: 1 MFEIIQGEGVFTGVPAVFVRLQGCPV-----------GCAWCDTKQTWETLDSDQTSFSQ 49
Query: 59 ---GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
T A + +++ + ++ V+TGGEP + L QA G
Sbjct: 50 ILLKTNDAPTWCQATAQEVVQRYQAQGYQAKHIVITGGEPCIYDLTELTQAFEAMGCRCQ 109
Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIGF 166
+ET+GT E W+ VSPK K+ E+K V + ++ + +
Sbjct: 110 IETSGTYEVCATENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVATEKDIDNLDELLA 169
Query: 167 DFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ T L I C WRLS+QTHK++ I
Sbjct: 170 RAQVSAQTAIALQPISQK--PRATELCIRTCIAR-NWRLSIQTHKYLNI 215
>gi|33862246|ref|NP_893807.1| putative organic radical activating protein [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33634464|emb|CAE20149.1| possible organic radical activating enzyme [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 223
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 45/238 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ E F +LQGEG H G+ A F R +GC S C +CDT
Sbjct: 3 NFLPLVEKFHSLQGEGFHTGQSAFFIRLAGC-----------SVGCSWCDTKH----SWD 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEI 114
+Y + + +I+E +K + V+TGGEPL L QA+NK +I
Sbjct: 48 KEKYPLIPIKKIIDEIKKARKKGASFLVITGGEPLHHNLDNLCQAINKETSEKDQNPIKI 107
Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQ-------VNVSPENYI 164
+ET+G + DWI +SPK K + ELK++ +++ E
Sbjct: 108 HIETSGVNKMSGNYDWITLSPKRHLPPKTYFLENFNELKIIINDKKDIDFAIDIKQEIMN 167
Query: 165 GFD-----------FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ +++ +QP +L I + NP+W LS+QTHK++ I+
Sbjct: 168 KYQNLSSKDNFYKLDKKYYVQPAW--ENARGFSLTIDFVKNNPEWNLSLQTHKYLKIK 223
>gi|163800817|ref|ZP_02194717.1| aconitate hydratase [Vibrio sp. AND4]
gi|159175166|gb|EDP59963.1| aconitate hydratase [Vibrio sp. AND4]
Length = 216
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 60/230 (26%), Positives = 88/230 (38%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MFETIQGEGVFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAKEEDQRQIGD 49
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ + D++ E G ++ V+TGGEP + L A + +
Sbjct: 50 ILVKTEDSPTWCFASAQDIVVEYKKQG-FNAKHIVITGGEPCIYDLRELTAAFEEMDCQC 108
Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
+ET+GT E W+ VSPK K+ E+K V Q ++ + +
Sbjct: 109 QIETSGTSEVVASESTWVTVSPKVAMKGKLPILKSALGRANEIKHPVGTQKDIDQLDVLL 168
Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E +LQP+ T L I C WRLSVQTHK++ I
Sbjct: 169 ASAEVGESTVIALQPISQK--PRATQLCIDTCIAR-NWRLSVQTHKYLSI 215
>gi|33241303|ref|NP_876245.1| putative organic radical activating protein [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33238833|gb|AAQ00898.1| Radical activating enzyme [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 225
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 93/241 (38%), Gaps = 48/241 (19%)
Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I E F +LQGEG H G+ A F R GC C +CDT +
Sbjct: 1 MSTCLPIVERFHSLQGEGLHFGKSAFFIRLGGC-----------KVGCPWCDTK----ES 45
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGF 112
+ + +L +E I + V+TGGEPL L + +
Sbjct: 46 WSIATHQEATVEELSKEAAIAQSQGAAILVITGGEPLHHNLNALCKTIQDFTSHNSRETM 105
Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSP--------- 160
I +ET+G E I+WI +SPK K + E+K+V Q
Sbjct: 106 PIHLETSGVDEITGLINWITLSPKRHALPKKSLLRACDEIKVVIHQKEDLLFAEEMANQS 165
Query: 161 -----------ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ LQP G +E T L I Y +P+WRLS+QTHK++G
Sbjct: 166 IKERQISKKTSDENHKISQPHLFLQP--GWNSKEGTQLTIEYIKSHPQWRLSLQTHKWLG 223
Query: 210 I 210
+
Sbjct: 224 V 224
>gi|254526725|ref|ZP_05138777.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202]
gi|221538149|gb|EEE40602.1| radical activating enzyme [Prochlorococcus marinus str. MIT 9202]
Length = 227
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 45/238 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I E F +LQGEG HAG+ A F R +GC C +CDT
Sbjct: 7 NFLPIVEQFHSLQGEGYHAGKSAFFVRLAGC-----------KVGCSWCDTK----NSWD 51
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-------RGFEI 114
+Y + +I+ I +K +CV+TGGEPL +A+ K +I
Sbjct: 52 EKKYPSISIKKIIDRIKIARDKGASFCVITGGEPLQHNLDNFCKAIKKMTMREEQNSMKI 111
Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL--------------------KLVFP 154
+ET+G DW+ +SPK K + K
Sbjct: 112 HIETSGVNSISGSYDWMTLSPKRHSPPKNYFLKNCNEIKIIINDIKDIEFAIQIKKETLK 171
Query: 155 QVNVSP-ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
Q +S E+ + + + F LQP +LAI + NP W+LS+QTHK++ I+
Sbjct: 172 QYQLSKSEDGLKREDKIFYLQPAWN--NSNGLSLAIDFVKNNPDWKLSLQTHKYLKIK 227
>gi|16330304|ref|NP_441032.1| hypothetical protein sll2011 [Synechocystis sp. PCC 6803]
gi|1652793|dbj|BAA17712.1| sll2011 [Synechocystis sp. PCC 6803]
Length = 208
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 31/217 (14%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I E F +LQGEG AG A F R GC++ C +CD +
Sbjct: 14 YPIAETFHSLQGEGAWAGGNAFFIRLGGCDV-----------HCPWCDQK----ETWPTQ 58
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ + +L+++ + V+TGGEPL+ PL + L +G + +ET+G
Sbjct: 59 HHPRQTVTELVQQAVTAK---PSFVVITGGEPLMHDLQPLCKTLKNQGLRLHLETSGAYP 115
Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP----- 175
DWI +SPK ELK++ Q E++ + E + P
Sbjct: 116 LTGQFDWITLSPKPYKLPQAAIYPLANELKVIISQ----DEDFDWAEMEARKISPGTPLY 171
Query: 176 -MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E +Y + +WRLS+QTHK++G+R
Sbjct: 172 LQAEWETEAMNEKIFAYILTHSQWRLSLQTHKYLGVR 208
>gi|149910796|ref|ZP_01899430.1| radical activating enzyme [Moritella sp. PE36]
gi|149806130|gb|EDM66110.1| radical activating enzyme [Moritella sp. PE36]
Length = 222
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 90/239 (37%), Gaps = 48/239 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y + EIF T+QGEG G +F R GC++ C +CDT
Sbjct: 1 MQYPVNEIFETVQGEGHFTGYPVIFIRLQGCDV-----------GCSWCDTKQTWTVDPE 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ + +I++ ++ V++GGEP V L
Sbjct: 50 MQVSQQTVNKACDDKPHWANFTAQEFITMIQK----NGFVAKHIVISGGEPCQYDLVELT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPK-------AGCDLKIKGGQELKLVFPQV 156
L + G+ +ET+GT E W+ VSPK ++ E+K V
Sbjct: 106 SELEQAGYFCQIETSGTSEVRATDSTWVTVSPKIQMKGQLPVLQSALRRANEIKHVIAME 165
Query: 157 NVSPE-----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E I + LQP+ + T+LAI C + W+LSVQ HK+I I
Sbjct: 166 KHIEELDALIADIDTSDKIMCLQPISQ--QKRATDLAIKLCIER-NWKLSVQMHKYIFI 221
>gi|254431688|ref|ZP_05045391.1| radical SAM [Cyanobium sp. PCC 7001]
gi|197626141|gb|EDY38700.1| radical SAM [Cyanobium sp. PCC 7001]
Length = 209
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG H G+ A F R +GC C +CDT
Sbjct: 9 LPVVEAFHSLQGEGLHTGQSAFFIRLAGC-----------RVGCSWCDTKH----SWPMA 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
+ L+ L + + + V+TGGEPL L L G + +ET+G
Sbjct: 54 GHAEWSLSGLADAALAARQAGAGFVVITGGEPLHHDLTALCALLRSHGLRLHLETSGVEP 113
Query: 124 PPQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVN-----VSPENYIGFDFER--FSL 173
+DWI +SPK + I+ ELK+V + ++ L
Sbjct: 114 LRGQVDWIVLSPKRHQPPRDDLIRLCNELKVVVHSHDDLDFALAMARQANASGNHPALLL 173
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
QP G E LA+ + + WRLS+Q+HK++ IR
Sbjct: 174 QP--GWESTEGQRLALDFVRSHADWRLSLQSHKWLAIR 209
>gi|317968277|ref|ZP_07969667.1| organic radical activating protein [Synechococcus sp. CB0205]
Length = 209
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/215 (29%), Positives = 89/215 (41%), Gaps = 24/215 (11%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E F +LQGEG HAGR A F R GC C +CDT
Sbjct: 12 LPVVETFHSLQGEGLHAGRSAFFIRLGGC-----------RVGCSWCDTKH----SWPAE 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTI 122
+ L +L + VLTGGEPL L A+ + I +ET+G
Sbjct: 57 VHPQQSLEELALACAEAASAGAAFVVLTGGEPLHHNLDALSAAIRQHCSLPIHLETSGVD 116
Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVN---VSPENYIGFDFERFSLQPM 176
DWI +SPK + + ELK+V + + + + LQP
Sbjct: 117 PLTGSPDWISLSPKRHQPPRAELLQRCDELKVVVHEAADLLFAEVSASQAPQATWLLQP- 175
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
G E LA+ + P+WRLS+Q+HK++G+R
Sbjct: 176 -GWDCREGQALALEFVQSQPRWRLSLQSHKWLGVR 209
>gi|261749286|ref|YP_003256971.1| hypothetical protein BPLAN_199 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497378|gb|ACX83828.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 204
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ +KE F ++QGEG +G A F RF GCN QC +CDT + K
Sbjct: 8 FPVKETFYSIQGEGFFSGIAAYFIRFEGCN-----------IQCDWCDTK-SSWKIEKKD 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE 123
V ++ + I E + + V+TGGEP++ PL L K+G+ I VET+G+
Sbjct: 56 FLTVHKIINNINE-------KVKTIVITGGEPMMWNLTPLTSLLKKKGYRIHVETSGSYP 108
Query: 124 -PPQGIDWICVSP---KAGCDLKIKGGQELKLVFPQVNV-----SPENYIGFDFERFSLQ 174
+ IDWI +SP K K ELK++ + Y+ LQ
Sbjct: 109 IHEKDIDWITISPKKKKRPLKENYKKMNELKIIICNESDFSFAEEQAFYVKKSNCVLCLQ 168
Query: 175 PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P + + ISY +PKW++S+Q HK + I
Sbjct: 169 P-EWKNNIKILPKIISYIKNHPKWKISLQIHKILNI 203
>gi|156974667|ref|YP_001445574.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116]
gi|156526261|gb|ABU71347.1| hypothetical protein VIBHAR_02385 [Vibrio harveyi ATCC BAA-1116]
Length = 216
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 60/230 (26%), Positives = 88/230 (38%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGEG G AVF R C + C +CDT
Sbjct: 1 MFETIQGEGIFTGVPAVFVRLQECPV-----------GCSWCDTKQTWYAEEKDQRQIGD 49
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ + D++ E G ++ V+TGGEP + L A + +
Sbjct: 50 ILVKTEDSPTWCFASAEDIVAEYKKQG-FNAKHVVITGGEPCIYDLRALTAAFEEMDCQC 108
Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
+ET+GT E W+ VSPK K+ E+K V Q ++ + +
Sbjct: 109 QIETSGTSEVVTSESTWVTVSPKVAMKGKLPVLKSALERANEIKHPVGTQKDIDQLDVLL 168
Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
E +LQP+ T L I C WRLSVQTHK++ I
Sbjct: 169 ASAEIGEKTVIALQPISQK--PRATQLCIDTCVAR-NWRLSVQTHKYLSI 215
>gi|254506224|ref|ZP_05118367.1| organic radical activating enzyme [Vibrio parahaemolyticus 16]
gi|219550704|gb|EED27686.1| organic radical activating enzyme [Vibrio parahaemolyticus 16]
Length = 216
Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
+F T+QGEG G +VF R C + C +CDT T +
Sbjct: 1 MFETIQGEGVFTGVPSVFVRLQECPV-----------GCAWCDTKQTW-DATPQDETSFS 48
Query: 69 QLADL--------------IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ I +++ E ++ V+TGGEP + PL +A G +
Sbjct: 49 EIMKKTQDSPTWCQSSAQGIVDEYRNQEYTAKHIVITGGEPCIYDLTPLTEAFEAIGCQC 108
Query: 115 AVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKL-VFPQVNVSPENYIG 165
+ET+GT E W+ VSPK K+ E+K V Q ++ + +
Sbjct: 109 QIETSGTSEVRATDNTWVTVSPKVAMKGKLPVLDSALVRANEIKHPVATQKDIDQLDELL 168
Query: 166 FDFE-----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 169 ERAKVPETTVVALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215
>gi|323497330|ref|ZP_08102348.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326]
gi|323317413|gb|EGA70406.1| organic radical activating enzyme [Vibrio sinaloensis DSM 21326]
Length = 216
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 56/230 (24%), Positives = 89/230 (38%), Gaps = 43/230 (18%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------------ 56
+F T+QGEG + G +VF R C + C +CDT
Sbjct: 1 MFETIQGEGVYTGVPSVFVRLQECPV-----------GCAWCDTKQTWEALPEDETSFDR 49
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI 114
++ + ++ + + G ++ V+TGGEP + PL +A G +
Sbjct: 50 IMVKTQDSPTWCSTSAEGIVNQYRVQG-YTAKHIVITGGEPCVYDLRPLTEAFEAIGCQC 108
Query: 115 AVETNGTIEP-PQGIDWICVSPKAGCDLKIK-------GGQELKLV------FPQVNVSP 160
+ET+GT E W+ VSPK K+ E+K Q++
Sbjct: 109 QIETSGTSEVLTSDNTWVTVSPKVAMKGKLPVLDSALLRADEIKHPVATEKDIDQLDELI 168
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ +LQP+ T L I C + WRLS+QTHK++ I
Sbjct: 169 KRAQVPKQTTIALQPISQK--PRATQLCIDVCVKR-NWRLSIQTHKYLSI 215
>gi|262341203|ref|YP_003284058.1| radical SAM domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272540|gb|ACY40448.1| radical SAM domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 201
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 67/219 (30%), Positives = 99/219 (45%), Gaps = 28/219 (12%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + IKE F ++QGEG + G A F RF GCN +C +CDT +
Sbjct: 1 MISFPIKESFYSIQGEGFYYGMAAFFIRFEGCN-----------IKCDWCDTK----ESW 45
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
K + + + ++I + V+TGGEP++ L + L K+G+ I VET+G
Sbjct: 46 KIKKKDFIPIHEIINHI---SNYTVKNIVITGGEPMMWNLYHLTKILKKKGYRIHVETSG 102
Query: 121 TIEPPQG-IDWICVSPKA---GCDLKIKGGQELKLVFPQVNV-----SPENYIGFDFERF 171
T + +DWI VSPK + K ELK++ ++
Sbjct: 103 TYPIEEKYMDWITVSPKKIKLPLEENYKKTNELKIIISNEKDFLFAEEQAIHVKTTNCFL 162
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
LQP F+ ISY +NPKWR+S+Q HK + I
Sbjct: 163 FLQPEWTNFV-TIFPKIISYIKENPKWRISLQIHKMLNI 200
>gi|21672674|ref|NP_660741.1| hypothetical protein BUsg401 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091592|sp|Q8K9D9|Y401_BUCAP RecName: Full=Uncharacterized protein BUsg_401
gi|21623312|gb|AAM67952.1| hypothetical 25.0 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 219
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 39/234 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----- 56
Y I EIF T+QGEG + G ++F R GC + C++CDT +
Sbjct: 1 MYYPINEIFQTIQGEGYYTGTPSIFIRLQGCPV-----------HCKWCDTKYTWKCNNE 49
Query: 57 ---------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
++ +++ + ++ + ++ V+TGGEP L + + + L
Sbjct: 50 DQISYEKIIMKKKSNRKWSYMNVKEI-ILIIKIKKWTAKHIVITGGEPCLYNLLEITKEL 108
Query: 108 NKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIK---GGQELKLV------FPQVN 157
K ++ +ET+GT WI +SPK E+K +N
Sbjct: 109 EKEDYKCQIETSGTELIKCSLNTWITLSPKINKKTLKTSILRSNEIKYPVLKKEDLFYLN 168
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ LQP+ EE N+ I C WRLSVQ HK++ IR
Sbjct: 169 SILKKIKNKKHNLIFLQPISQ--NEEALNICIKTCIIK-NWRLSVQIHKYLKIR 219
>gi|220926065|ref|YP_002501367.1| radical SAM domain-containing protein [Methylobacterium nodulans
ORS 2060]
gi|219950672|gb|ACL61064.1| Radical SAM domain protein [Methylobacterium nodulans ORS 2060]
Length = 230
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/245 (27%), Positives = 94/245 (38%), Gaps = 49/245 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M ++++ EIF T QGE G +VF R GC + C FCDT
Sbjct: 1 MTVFAVNEIFETFQGEAAFTGTPSVFVRLQGCPV-----------GCAFCDTKMTWHVRP 49
Query: 61 KGG---------RYNVDQLADLIEE--QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK 109
+ + A L +E + GE R+ V TGGEP L + + L
Sbjct: 50 EHEIEVGAMIAKTEDAPTWARLHDEDLAMLVGEFRARHVVFTGGEPALYDLTEVSRRLID 109
Query: 110 RGFEIAVETNGTI-EPPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSPE 161
+G + +ET+GT W+ VSPK +K E+K+ E
Sbjct: 110 QGRTVQLETSGTALIRIDPHAWVTVSPKIDMPGGLKVLPAAVARANEIKMPI-GKPADIE 168
Query: 162 NYIGFDFER---------------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
F E LQP+ E+ T L + N WRLS+QTHK
Sbjct: 169 KLQAFLAEHPAVGVAYTGSGPALLIWLQPLSQS--EKATALCMEAAAAN-GWRLSLQTHK 225
Query: 207 FIGIR 211
F+G+R
Sbjct: 226 FVGVR 230
>gi|121533882|ref|ZP_01665708.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
gi|121307393|gb|EAX48309.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
Length = 196
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 31/218 (14%)
Query: 1 MK--LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
MK Y + EIF ++QGEG H G A F R +GCNL +CR+CDT
Sbjct: 1 MKAIKYPVVEIFTSIQGEGTHMGLPAAFIRLAGCNL-----------RCRWCDTVHAF-D 48
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
D++A + Q + V+TGGEP L PL+ AL+ RG +A+ET
Sbjct: 49 PANATYLTPDEIATGLAPQLV---------VITGGEPTLHDLGPLVAALHARGKYVAIET 99
Query: 119 NGTIEPPQGI--DWICVSPKAGC-DLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQ 174
NGT P+ DW+ SPK L ELK V R LQ
Sbjct: 100 NGTNPIPEKWGIDWVTASPKPNSGYLLACQADELKYVVDDEFTLDCVADDAVPPGRIFLQ 159
Query: 175 PMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFIGI 210
E+ A + +NP+ RL +Q HK +G+
Sbjct: 160 VES--ARPESAKKAFALVMENPERGLRLGIQLHKILGV 195
>gi|313203030|ref|YP_004041687.1| radical sam domain protein [Paludibacter propionicigenes WB4]
gi|312442346|gb|ADQ78702.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
Length = 209
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 97/218 (44%), Gaps = 28/218 (12%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L ++ EIF ++QGEG +AGR AVF R S CN C +CDTD+ KG
Sbjct: 9 LLNVVEIFHSIQGEGANAGRSAVFVRLSNCN-----------KNCWYCDTDWS-----KG 52
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+V Q+ + + + + TGGEP LQ+ + + + +ETNGT
Sbjct: 53 ETMSVSQILAEVNKFVGKKDYPNNLIIWTGGEPTLQLTDEI--LSHFSEYYNCIETNGTN 110
Query: 123 EPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG- 178
P I +I SPK K E + +V P+ + + + P+
Sbjct: 111 PVPSLIKYISCSPKVKPEVLRKNFKHVNEFRYPIGDGDVLPDIAELPAADNYIVSPIFLG 170
Query: 179 ------PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++EN AI + +NP+WRLS+Q HK + I
Sbjct: 171 EAKKRFEQVDENVKYAIDFVKKNPRWRLSLQLHKLLNI 208
>gi|34540794|ref|NP_905273.1| hypothetical protein PG1057 [Porphyromonas gingivalis W83]
gi|34397108|gb|AAQ66172.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
Length = 197
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 68/216 (31%), Positives = 99/216 (45%), Gaps = 33/216 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF +LQGEG + GR AVF R +GCNL C +CDTDF +G +
Sbjct: 3 VNEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFA-----QGKKM 46
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+++++A IE R+ + TGGEP LQ+ ++ G+ A+ETNGT P
Sbjct: 47 SLEEIARSIE------HYPTRFLIWTGGEPTLQLTEEATAYFHRLGYFQAIETNGTRPVP 100
Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-PQVNVSPENYIGFDFERFSLQPMD-- 177
+GID+I SPK G K+K G E + + P + + + P+
Sbjct: 101 KGIDYISCSPKTGAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTAQHYLVSPIFAG 160
Query: 178 ---GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + P WRLS+Q HK I I
Sbjct: 161 DDAMEPDPSAITRCVEFVKAFPAWRLSIQMHKLIHI 196
>gi|268680497|ref|YP_003304928.1| radical SAM protein [Sulfurospirillum deleyianum DSM 6946]
gi|268618528|gb|ACZ12893.1| Radical SAM domain protein [Sulfurospirillum deleyianum DSM 6946]
Length = 192
Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + E+F ++QGEG G ++F R GCNL C FCD +
Sbjct: 1 MLKVVEMFYSIQGEGTQVGVPSIFIRLYGCNLS-----------CSFCD---EELHKGAY 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT- 121
+ D + + I+ ++TGGEP + I L + ++VETNG
Sbjct: 47 EELSFDAVLERIKA------YPSMNVIITGGEPSIYDLNGFIDFLQAHMYAVSVETNGYN 100
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF- 180
+WI SPK + G E+K + + + + ++ +QP +
Sbjct: 101 FSNIASANWITYSPKDWNHIAKHGYDEVKFIVSKDSDVSKLLDFKSYKPLFIQPQNNAHT 160
Query: 181 -LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+EN I++ NP++ LSVQ HKF+G+
Sbjct: 161 PNQENLAFCIAFVKANPRFILSVQLHKFLGV 191
>gi|94676807|ref|YP_588675.1| hypothetical protein BCI_0220 [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94219957|gb|ABF14116.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 223
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 84/236 (35%), Gaps = 41/236 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I I TLQGEG +G A+F R GC C +CDT + +
Sbjct: 1 MQYPINSICQTLQGEGYFSGIPAIFIRLQGC-----------MVGCNWCDTKYTWHKNKI 49
Query: 62 GGRYNVDQL-------------ADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
D + + I + ++ V+TGGEP + +PL L
Sbjct: 50 EQGIAKDIMLKKANSSVWSNLSEEDILALIVQQSWIAKHVVITGGEPCMYDLLPLTYLLE 109
Query: 109 KRGFEIAVETNGTIE-PPQGIDWICVSPKAGCDLKIK-------GGQELKLVFPQVNVSP 160
+ F +ET+GT W+ VSPK ++ E+K V +
Sbjct: 110 QYKFSCQIETSGTQSIKCTSNTWVTVSPKINKHYDVQILAQALSRSNEIKHVVSRQRDIK 169
Query: 161 ENYIGF------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
LQP+ L T L I C WRLS+Q HK++ I
Sbjct: 170 YLDELLLTLKDSKQRVICLQPLSQKKL--ATKLCIDTCIMR-NWRLSMQIHKYLNI 222
>gi|212702071|ref|ZP_03310199.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098]
gi|212674512|gb|EEB34995.1| hypothetical protein DESPIG_00073 [Desulfovibrio piger ATCC 29098]
Length = 225
Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 63/245 (25%), Positives = 89/245 (36%), Gaps = 54/245 (22%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
M+ ++ E F+TLQGE AG AVF RF GC + C +CDT +
Sbjct: 1 MRTLAVNEFFVTLQGEASFAGTPAVFVRFQGCPV-----------ACPWCDTQYAARLDG 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
G + L I E R+ VLTGGEP L
Sbjct: 50 ATLDFAAVRAKQGPGAGYADVEPEALLAAIREAGP------RHVVLTGGEPCRHDLTELT 103
Query: 105 QALNKRGFEIAVETNGTIEPPQG-IDWICVSPK-------AGCDLKIKGGQELKLVFPQV 156
L GF + +ET+GT+ W+ +SPK + E+K
Sbjct: 104 SRLVTEGFRVQIETSGTMPIRCHADVWVTLSPKLDMPGGLEVRQDAWERAGEIKFPVDTA 163
Query: 157 NVSPENYIGFDFER----------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
R LQP+ +E T L + F + +WR+SVQ HK
Sbjct: 164 ADLARFEQALAVARQAASRPLTELVWLQPVSQ--GKEATRLCVEAAFAH-QWRVSVQVHK 220
Query: 207 FIGIR 211
++ +R
Sbjct: 221 YLDLR 225
>gi|187251045|ref|YP_001875527.1| putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium
minutum Pei191]
gi|186971205|gb|ACC98190.1| Putative 6- pyruvoyltetrahydropterin 2-reductase [Elusimicrobium
minutum Pei191]
Length = 195
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 30/213 (14%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ + EIF +LQGEG + G AVF R SGC C FCDTDF +
Sbjct: 6 FKLTEIFYSLQGEGMYTGTAAVFVRLSGC-----------LMGCSFCDTDF-----KENF 49
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-I 122
+++ ++ + + ++TGGEP Q LI++L + G ++ +ETNG+
Sbjct: 50 VMTSEEIIKEVK------KYPSKIVIITGGEPAEQDICALIKSLKQAGLKVHIETNGSIY 103
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-----DFERFSLQPMD 177
QG+D + VSPK D + + + + + + + LQP
Sbjct: 104 FDAQGVDNLTVSPKTYVDPNMLKSAHVIKIVVGQDTDISDLKKYFNYASEGRLIYLQPES 163
Query: 178 GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+EN +L + +NP RLS+QTHKF I
Sbjct: 164 NK--QENIDLCVKLIKENPFLRLSLQTHKFAKI 194
>gi|152979671|ref|YP_001345300.1| radical SAM domain-containing protein [Actinobacillus succinogenes
130Z]
gi|150841394|gb|ABR75365.1| Radical SAM domain protein [Actinobacillus succinogenes 130Z]
Length = 208
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 39/222 (17%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G A+F RF CNL C +CDT +
Sbjct: 10 YPIVEIFESLQGEGANTGMPAIFIRFGKCNL-----------ACPWCDTPY--------N 50
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
+ + +I++ + ++TGGEP +Q L++ L + G+ +A+ETNG
Sbjct: 51 EFAALTFSQIIQK---VRSFSAKNIIITGGEPTIQPRLSLLLEQLKQEGYFLAIETNGLK 107
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--------DFERFSLQ 174
P ID+I VSPK G + + + V+ EN + F + L
Sbjct: 108 TVPSQIDYIAVSPK-GLYWEKYHSRCISFAHEVRIVADENVLKFCAFIEDKIKANHYYLS 166
Query: 175 PMDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
P + + N ++ PKW+LS+QTHK IGI
Sbjct: 167 PCET-DGKMNLYETVTLLGQLNQRANRPKWQLSLQTHKLIGI 207
>gi|223041979|ref|ZP_03612163.1| hypothetical protein AM202_0574 [Actinobacillus minor 202]
gi|223017236|gb|EEF15664.1| hypothetical protein AM202_0574 [Actinobacillus minor 202]
Length = 206
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 37/222 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I EIF +LQGEG + G ++F RF CNL C +CDT +
Sbjct: 7 TYPIVEIFESLQGEGFNTGMPSIFIRFGKCNLT-----------CSWCDTPYHQFDSW-- 53
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+ Q+ + +E + + ++TGGEP +Q ++ + + L +RG+ +A+ETNG
Sbjct: 54 ---TLPQILEKVE------GYQAKNIIITGGEPTIQPNLTVLLDELKRRGYFLAIETNGL 104
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVS--PENYIGFDFERFSLQ 174
+ P ID+I SPK K + E+++V + ++ + ER+ L
Sbjct: 105 KDIPSQIDYIATSPKRLYAEKYQRRCIPFAHEVRIVADENVIAFCEQIEAQISAERYYLS 164
Query: 175 PMDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
P + + N I+ PKW+LS+QTHK +GI
Sbjct: 165 PCE-VEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGI 205
>gi|258593846|emb|CBE70187.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment']
Length = 214
Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + EIF ++QGE +AGR VF R +GCNL +CR+CDT + +
Sbjct: 1 MMSLRVNEIFYSIQGESTYAGRPCVFVRLTGCNL-----------RCRWCDTTYAFHE-- 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
G + +++Q+ + + + +TGGEPLLQ PLI L G+E+ +ET
Sbjct: 48 -GEQRSIEQVLEQV------RGYKCPLVEITGGEPLLQEAVHPLIDRLLLEGYEVLIETG 100
Query: 120 GTIEPPQGIDWIC-----VSPKAGCDLKI--------KGGQELKLV------FPQVNVSP 160
G++ + + +P +G D ++K V +
Sbjct: 101 GSLSIDRLDRRVVKILDLKAPGSGMDPHNNLENLRHLDRKDQIKFVVADRRDYEWARRVM 160
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + P+ G LA RL +Q HK++
Sbjct: 161 AEHALAEKAHVLFSPVLGELHPR--ELAEWILTDRLNVRLQIQLHKYL 206
>gi|188995161|ref|YP_001929413.1| hypothetical protein PGN_1297 [Porphyromonas gingivalis ATCC 33277]
gi|188594841|dbj|BAG33816.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 197
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/216 (31%), Positives = 97/216 (44%), Gaps = 33/216 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF +LQGEG + GR AVF R +GCNL C +CDTDF +G +
Sbjct: 3 INEIFHSLQGEGANTGRAAVFVRLAGCNL-----------ACPYCDTDFA-----QGKKM 46
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+++++A IE R+ + TGGEP LQ+ ++ G+ A+ETNGT P
Sbjct: 47 SLEEIARSIE------HYPTRFLIWTGGEPTLQLTEEATAYFHRLGYYQAIETNGTRLVP 100
Query: 126 QGIDWICVSPKAGCDLKIK-----GGQELKLVF-PQVNVSPENYIGFDFERFSLQPMD-- 177
+GID+I SPK K+K G E + + P + + + P+
Sbjct: 101 KGIDYISCSPKPEAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTAQHYLVSPIFAG 160
Query: 178 ---GPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ + P W LS+Q HK I I
Sbjct: 161 DDAMEPDPSAITRCVEFVKAFPAWCLSIQMHKLIHI 196
>gi|325291195|ref|YP_004267376.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
gi|324966596|gb|ADY57375.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
Length = 203
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 92/221 (41%), Gaps = 36/221 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K Y + EIF ++QGEG G A F R CNL +C +CD+ K
Sbjct: 8 KEYPVHEIFDSIQGEGYWTGAAASFVRLQQCNL-----------RCAWCDSKGTWEG--K 54
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ D++ + + + +LTGGEPLL L+++L G ++ +ETNGT
Sbjct: 55 PEKMTADEILAAVHSERV---------ILTGGEPLLHDLTALLESLKAAGKKVHIETNGT 105
Query: 122 IEPPQGID---WICVSPKA-----GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE---R 170
+ WI VSPK E K V + + S + +F
Sbjct: 106 QPWKESYPQEAWITVSPKKESGYLVQPSIKSKANEYKFVVDE-DFSADILAQLEFNSCPN 164
Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L P + E A+S Q P RL++Q HK IG+R
Sbjct: 165 IFLSPEN--VRSEMIKKALSIVAQYPFCRLTLQLHKLIGVR 203
>gi|261867762|ref|YP_003255684.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413094|gb|ACX82465.1| NrdG protein [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 209
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y+I EIF +LQGEG + G +F RF CNL C +CDT++ +
Sbjct: 8 MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTNYNQFE-- 54
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
R + Q+ + + + ++TGGEP + ++ + ++ + G+ +A+ETN
Sbjct: 55 ---RMTLAQVMEEV------RSFSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 105
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN--------YIGFDFERF 171
G P ID+I SPK K + + + V+ EN ER+
Sbjct: 106 GLKPIPPQIDYIATSPKRLYPHKYER-RCIDFAHEVRIVADENVMAFCELIEDKIRAERY 164
Query: 172 SLQPMDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
L P + LE T L ++ PKW LSVQTHK IGI
Sbjct: 165 YLSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGI 208
>gi|240949106|ref|ZP_04753454.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305]
gi|240296501|gb|EER47133.1| hypothetical protein AM305_01574 [Actinobacillus minor NM305]
Length = 206
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 37/222 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I EIF +LQGEG + G ++F RF CNL C +CDT +
Sbjct: 7 TYPIVEIFESLQGEGFNTGMPSIFIRFGKCNLT-----------CSWCDTPYHQFDSW-- 53
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+ Q+ + +E + + ++TGGEP +Q ++ + + L +RG+ +A+ETNG
Sbjct: 54 ---TLTQILEKVE------GYQAKNIIITGGEPTIQPNLTVLLDELKQRGYFLAIETNGL 104
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVS--PENYIGFDFERFSLQ 174
+ P ID+I SPK K + E+++V + ++ + + ER+ L
Sbjct: 105 KDIPTQIDYIATSPKRLYAKKYQRRCIPFAHEVRIVADENVIAFCEQIETQINAERYYLS 164
Query: 175 PMDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
P + + N I+ PKW+LS+QTHK +GI
Sbjct: 165 PCE-VEGKMNLLETITQIGLLNQRKNKPKWQLSIQTHKIVGI 205
>gi|293390438|ref|ZP_06634772.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290950972|gb|EFE01091.1| NrdG protein [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 224
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y+I EIF +LQGEG + G +F RF CNL C +CDT++ +
Sbjct: 23 MPSYNIVEIFESLQGEGFNTGMPCIFVRFGKCNLT-----------CPWCDTNYNQFE-- 69
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
R + Q+ + + + ++TGGEP + ++ + ++ + G+ +A+ETN
Sbjct: 70 ---RMTLAQVMEEV------RSFSSKNIIITGGEPTIVPNIEILLEQMKSEGYFLAIETN 120
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN--------YIGFDFERF 171
G P ID+I SPK K + + + V+ EN ER+
Sbjct: 121 GLKPIPPQIDYIATSPKRLYPNKYER-RCIDFAHEVRIVADENVMAFCELIEDKIRAERY 179
Query: 172 SLQPMDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
L P + LE T L ++ PKW LSVQTHK IGI
Sbjct: 180 YLSPCEINGKMNLLETITQLGQLNQRVNRPKWLLSVQTHKLIGI 223
>gi|52425912|ref|YP_089049.1| NrdG protein [Mannheimia succiniciproducens MBEL55E]
gi|52307964|gb|AAU38464.1| NrdG protein [Mannheimia succiniciproducens MBEL55E]
Length = 224
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 70/222 (31%), Positives = 102/222 (45%), Gaps = 37/222 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y I EIF +LQGEG + G +F RF CNL C +CDTD+
Sbjct: 25 RYPIVEIFESLQGEGFNTGMPCIFVRFGKCNL-----------ACPWCDTDY-------- 65
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGT 121
R+ L ++E+ + ++TGGEP +Q ++ L+ A KR G+ +A+ETNG
Sbjct: 66 ERFEYRTLQQIVEK---VRSFSAKNIIITGGEPTIQPNISLLLAQFKRDGYFLAIETNGL 122
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVF--PQVNVSPENYIGFDFERFSLQ 174
P ID+I SPKA K + E+++V N + ER+ L
Sbjct: 123 RAVPPQIDYISASPKAMYAEKYRRRCIDFAHEVRIVMDADAENFCQQIEQKIRAERYYLS 182
Query: 175 PMDGPFLEENTNLAISYCFQ------NPKWRLSVQTHKFIGI 210
P + + N I+ + PKW+LS+QTHK GI
Sbjct: 183 PCEIE-GKMNLLETIALLGKLNQRPNKPKWQLSIQTHKLAGI 223
>gi|186474664|ref|YP_001863635.1| hypothetical protein Bphy_7690 [Burkholderia phymatum STM815]
gi|184198623|gb|ACC76585.1| conserved hypothetical protein [Burkholderia phymatum STM815]
Length = 235
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 85/234 (36%), Gaps = 40/234 (17%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG------- 56
Y + EIF +LQGEG G +VF R GC + C +CD+
Sbjct: 16 YPVNEIFESLQGEGNFTGTPSVFVRLQGCPV-----------GCAWCDSKHTWQVMPERE 64
Query: 57 -----IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
+ G + D+ I + + V+TGGEP + PLI L
Sbjct: 65 ISVGAMGEKTGRPCDSYAWCDVPTLANIVRAADAEHVVITGGEPCMYDLRPLIAKLQAWH 124
Query: 112 FEIAVETNGTI-EPPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENY 163
+ VET+GT ++ SPK G D ++ E+K +
Sbjct: 125 HRVQVETSGTYVPLVTPSTFVTTSPKYGMPSGRPVLDEALERANEIKYPVGKQRDIDIVL 184
Query: 164 IGFDF------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
D LQP+ T + + WR+S+QT+KFI IR
Sbjct: 185 ERLDPIQRARGTPIWLQPLS--LSSRATGICMK-AAHRYGWRVSLQTNKFINIR 235
>gi|165976520|ref|YP_001652113.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876621|gb|ABY69669.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 210
Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 36/223 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG + G +F R CNL C +CDT++ +
Sbjct: 9 TAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NE 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
++++ ++ + ++ ++ ++TGGEP + L+ G+ +A+ETNG
Sbjct: 53 YEKWSLAKILERVK------SYSAKHIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNG 106
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNV---SPENYIGFDFERFS 172
P+ ID+I SPK K E+++V + +V + E +
Sbjct: 107 LKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYY 166
Query: 173 LQPM--DGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
L P DG LE T L ++ PKW+LS+QTHK +GI
Sbjct: 167 LSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGI 209
>gi|32035298|ref|ZP_00135305.1| COG0602: Organic radical activating enzymes [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208571|ref|YP_001053796.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae L20]
gi|190150424|ref|YP_001968949.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303253329|ref|ZP_07339478.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307246015|ref|ZP_07528097.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307248119|ref|ZP_07530147.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307250350|ref|ZP_07532299.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307254996|ref|ZP_07536814.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259432|ref|ZP_07541157.1| hypothetical protein appser11_12290 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307263767|ref|ZP_07545373.1| hypothetical protein appser13_11780 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126097363|gb|ABN74191.1| hypothetical protein APL_1099 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|189915555|gb|ACE61807.1| hypothetical protein APP7_1155 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302648011|gb|EFL78218.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306852950|gb|EFM85173.1| hypothetical protein appser1_12160 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306855296|gb|EFM87471.1| hypothetical protein appser2_11000 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306857625|gb|EFM89732.1| hypothetical protein appser4_11310 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306861869|gb|EFM93845.1| hypothetical protein appser9_12300 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866368|gb|EFM98231.1| hypothetical protein appser11_12290 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306870888|gb|EFN02626.1| hypothetical protein appser13_11780 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 210
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 36/223 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG + G +F R CNL C +CDT++ +
Sbjct: 9 TAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NE 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
+++V ++ + ++ + ++TGGEP + L+ G+ +A+ETNG
Sbjct: 53 YEKWSVAKILERVK------SYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNG 106
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNV---SPENYIGFDFERFS 172
P+ ID+I SPK K E+++V + +V + E +
Sbjct: 107 LKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYY 166
Query: 173 LQPM--DGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
L P DG LE T L ++ PKW+LS+QTHK +GI
Sbjct: 167 LSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGI 209
>gi|307257150|ref|ZP_07538922.1| hypothetical protein appser10_11500 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864312|gb|EFM96223.1| hypothetical protein appser10_11500 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 210
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 36/223 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG + G +F R CNL C +CDT++ +
Sbjct: 9 TAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NE 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
+++V ++ + ++ + ++TGGEP + L+ G+ +A+ETNG
Sbjct: 53 YEKWSVAKILERVK------SYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNG 106
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNV---SPENYIGFDFERFS 172
P+ ID+I SPK K E+++V + +V + E +
Sbjct: 107 LKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYY 166
Query: 173 LQPM--DGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
L P DG LE T L ++ PKW+LS+QTHK +GI
Sbjct: 167 LSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGI 209
>gi|303250156|ref|ZP_07336358.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252734|ref|ZP_07534625.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302651219|gb|EFL81373.1| organic radical activating enzyme [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859766|gb|EFM91788.1| hypothetical protein appser6_12480 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 210
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 36/223 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG + G +F R CNL C +CDT++ +
Sbjct: 9 TAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NE 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
+++V ++ + ++ + ++TGGEP + L+ G+ +A+ETNG
Sbjct: 53 YEKWSVAKILERVK------SYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNG 106
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNV---SPENYIGFDFERFS 172
P+ ID+I SPK K E+++V + +V + E +
Sbjct: 107 LKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVMDKGDVQSFCEQIETQITAEHYY 166
Query: 173 LQPM--DGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
L P DG LE T L ++ PKW+LS+QTHK +GI
Sbjct: 167 LSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGI 209
>gi|307261578|ref|ZP_07543246.1| hypothetical protein appser12_11390 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868701|gb|EFN00510.1| hypothetical protein appser12_11390 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 210
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 36/223 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGEG + G +F R CNL C +CDT++ +
Sbjct: 9 TAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NE 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
++++ ++ + ++ + ++TGGEP + L+ G+ +A+ETNG
Sbjct: 53 YEKWSLAKILERVK------SYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNG 106
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNV---SPENYIGFDFERFS 172
P+ ID+I SPK K E+++V + +V + E +
Sbjct: 107 LKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYY 166
Query: 173 LQPM--DGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
L P DG LE T L ++ PKW+LS+QTHK +GI
Sbjct: 167 LSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGI 209
>gi|292490344|ref|YP_003525783.1| radical SAM protein [Nitrosococcus halophilus Nc4]
gi|291578939|gb|ADE13396.1| Radical SAM domain protein [Nitrosococcus halophilus Nc4]
Length = 213
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK I EIF +LQGE G VF R +GC L +C +CDT++
Sbjct: 1 MKRLRITEIFHSLQGESRSVGWPTVFVRLTGCPL-----------RCHYCDTEYAF---Q 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
G +D++ + E R+ +TGGEPL Q + L+ L G+E+++ET+
Sbjct: 47 GGTWMELDEILATVAE------FGARHVTVTGGEPLAQPACLELLTQLCDVGYEVSLETS 100
Query: 120 GTIEPPQGIDWICVSPKAGCD-------------LKIKGGQELKLVFPQVNV------SP 160
G ++ + + ++KLV + +
Sbjct: 101 GALDISAVDPRVVKVMDLKTPGSGEEARNSTTNLDYLSSQDQVKLVLCDRHDYEWARTAL 160
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E + + P T+LA R+ +Q HK++
Sbjct: 161 ERHRLAERCEVLFSPSYEQLSP--TDLAEWILEDRLPVRMQIQLHKYL 206
>gi|284050732|ref|ZP_06380942.1| hypothetical protein AplaP_04589 [Arthrospira platensis str.
Paraca]
gi|291570892|dbj|BAI93164.1| possible organic radical activating enzyme [Arthrospira platensis
NIES-39]
Length = 204
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 92/224 (41%), Gaps = 33/224 (14%)
Query: 1 MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E F T+QGEG AG F R +GC + C +CDT + G
Sbjct: 1 MITIPVHETFQQTIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DG 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
KG NV L+ E V++GGEP + +P L++ L G ++++ET
Sbjct: 48 GKGLPRNVRSFDQLLAELV------SPRVVISGGEPFIYPQLPDLVRVLEDSGRQVSIET 101
Query: 119 NG-TIEPPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGFDFE- 169
+G + + WI +SPK + E+KLV +
Sbjct: 102 SGAFWQDVSDLCWITLSPKEHISPGYPVVSPMWRRASEIKLVIDVGDELEFYGCRLAENS 161
Query: 170 --RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP +E L + Q P +RLSVQ HK+IG++
Sbjct: 162 TIPVFLQPQWT-DIERTLPLVLEKLKQFPGYRLSVQLHKYIGVQ 204
>gi|219871538|ref|YP_002475913.1| anaerobic ribonucleotide reductase activating protein NrdG
[Haemophilus parasuis SH0165]
gi|219691742|gb|ACL32965.1| anaerobic ribonucleotide reductase activating protein NrdG
[Haemophilus parasuis SH0165]
Length = 204
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 66/220 (30%), Positives = 97/220 (44%), Gaps = 35/220 (15%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF TLQGEG + G ++F RF CNL C +CDT++
Sbjct: 6 YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+Y LAD+++ + + ++TGGEP +Q D+ + L G+ IA+ETNG
Sbjct: 47 QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQPDLTYLLDTLKAEGYFIAIETNGLK 103
Query: 123 EPPQGIDWICVSPKA-----GCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFSLQP 175
P ID+I SPK I E+++V ++ I ER+ L P
Sbjct: 104 PVPPQIDYIATSPKRLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAERYYLSP 163
Query: 176 MDGPFLEENTNLAISYCF-----QNPKWRLSVQTHKFIGI 210
+ + P+W+LS+QTHK GI
Sbjct: 164 CEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGI 203
>gi|319945214|ref|ZP_08019476.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Lautropia mirabilis ATCC 51599]
gi|319741784|gb|EFV94209.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Lautropia mirabilis ATCC 51599]
Length = 244
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 70/221 (31%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF TLQGEG + G +VF RF CNL C +CDTD+
Sbjct: 46 YRIVEIFETLQGEGFNTGMPSVFIRFGKCNL-----------ACPWCDTDY--------N 86
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
R+ L D++ + R ++TGGEP +Q + L+ +L G +A+ETNG
Sbjct: 87 RFGTMTLGDILAK---VRTFSARNVIITGGEPTIQPHLERLLDSLKAEGHFLAIETNGLK 143
Query: 123 EPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK A IK E+++V + + +R+ L P
Sbjct: 144 PVPPQIDYIATSPKRLYQQAYQKRHIKFAHEVRIVVDGDVRDFCAQIEDSIQADRYYLSP 203
Query: 176 MDGPFLEENTNLAISYCFQ------NPKWRLSVQTHKFIGI 210
+ N I+ Q P+W+LS+QTHK GI
Sbjct: 204 CE-VDGRMNMLETITQLGQLNQRPGRPRWQLSIQTHKLAGI 243
>gi|329119485|ref|ZP_08248170.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327464418|gb|EGF10718.1| radical SAM domain protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 212
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G A+F R CNL C +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAIFVRLGKCNL-----------ACSWCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
++++ L+++ R ++TGGEP +Q L+ AL G+ + +ETNG
Sbjct: 54 KFSMMPLSEI---LGRLKNYTARNIIITGGEPTIQPHLNTLLDALKNAGYRLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVS--PENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V +S R+ L P
Sbjct: 111 PAPPQIDYVAASPKACYAAKYEKSCIAAADEVRIVADGDVISFCEALEQKIRARRYYLSP 170
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|322514966|ref|ZP_08067979.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Actinobacillus ureae ATCC 25976]
gi|322119074|gb|EFX91234.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Actinobacillus ureae ATCC 25976]
Length = 210
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF +LQGEG + G +F R CNL C +CDT++ + +
Sbjct: 12 PIVEIFESLQGEGFNTGLPCIFVRLGKCNL-----------ACPWCDTNY-----NEYEK 55
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
+NV ++ + ++ + ++TGGEP + L+ G+ +A+ETNG
Sbjct: 56 WNVAKILERVK------SYSAKNIIITGGEPTMYANLSVLLDVFKVEGYWLAIETNGLKA 109
Query: 124 PPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNV---SPENYIGFDFERFSLQP 175
P+ ID+I SPK K E+++V + +V + E + L P
Sbjct: 110 VPKQIDYIATSPKLMYQEKYLRECIPFANEVRIVMDKGDVQGFCEQIETQITAEHYYLSP 169
Query: 176 M--DGP--FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
DG LE T L ++ PKW+LS+QTHK +GI
Sbjct: 170 CEVDGKMNLLETITQLGILNQRANKPKWQLSLQTHKLVGI 209
>gi|251792175|ref|YP_003006895.1| NrdG protein [Aggregatibacter aphrophilus NJ8700]
gi|247533562|gb|ACS96808.1| NrdG protein [Aggregatibacter aphrophilus NJ8700]
Length = 209
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 65/220 (29%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y+I EIF +LQGEG + G ++F RF CNL C +CDT++ +
Sbjct: 11 YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNYNQFE----- 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
R + Q+ + + + ++TGGEP + ++ L+ + G+ +A+ETNG
Sbjct: 55 RMTLAQIMEEV------RSFSAKNIIITGGEPTIVPNIELLLNQMKSEGYFLAIETNGLK 108
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQV--NVSPENYIGFDFERFSLQP 175
P ID+I SPK K + E+++V + R+ L P
Sbjct: 109 PIPTQIDYIATSPKRLYQHKYEQRCIEFADEVRIVADGDVSDFCALIEENIQATRYYLSP 168
Query: 176 MDG----PFLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
+ LE T L ++ PKW LSVQTHK IGI
Sbjct: 169 CEINGKMNLLETITQLGLLNQRPNKPKWLLSVQTHKLIGI 208
>gi|261492302|ref|ZP_05988864.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495367|ref|ZP_05991816.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261308970|gb|EEY10224.1| NrdG protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311985|gb|EEY13126.1| NrdG protein [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 208
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 35/221 (15%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGEG + G A+F RF CNL C +CDT++ +
Sbjct: 9 RFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLT-----------CPWCDTNYNQFE---- 53
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
++ + + + + ++TGGEP +Q ++ L++ K G+ +A+ETNG
Sbjct: 54 -QWTLSDILAKV------RSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIETNGL 106
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQ 174
E P ID+I SPK K + E+++V + E + L
Sbjct: 107 KEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKAEHYYLS 166
Query: 175 PM--DGPFLEENTNLAISYCFQNPK---WRLSVQTHKFIGI 210
P +G T I Q P W+LS+QTHK +GI
Sbjct: 167 PCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGI 207
>gi|145627830|ref|ZP_01783631.1| predicted methyltransferase [Haemophilus influenzae 22.1-21]
gi|144979605|gb|EDJ89264.1| predicted methyltransferase [Haemophilus influenzae 22.1-21]
Length = 217
Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++I EIF +LQGEG + G +VF RF CNL C +CDT +
Sbjct: 19 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNLD-----------CPWCDTPY-----NNFK 62
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++V Q+ + + + ++TGGEP + + ++ G+ +A+ETNG
Sbjct: 63 RWSVSQILEKV------RSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 116
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK+ K + E+++V + + + L P
Sbjct: 117 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 176
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ + N I+ PKW+LS+QTHK IGI
Sbjct: 177 CEI-DGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 216
>gi|209525918|ref|ZP_03274452.1| Radical SAM domain protein [Arthrospira maxima CS-328]
gi|209493595|gb|EDZ93916.1| Radical SAM domain protein [Arthrospira maxima CS-328]
Length = 204
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 33/223 (14%)
Query: 1 MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E F T+QGEG AG F R +GC + C +CDT + G
Sbjct: 1 MITIPVHETFQQTIQGEGYWAGTPVDFIRLAGCPV-----------GCPWCDTGYA--DG 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
KG N+ +L+ E V++GGEP + +P L++ L + G ++++ET
Sbjct: 48 GKGLPRNMRSFDELLAELV------SPRVVISGGEPFIYPQLPDLVRVLEETGRQVSIET 101
Query: 119 NG-TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------- 170
+G + + WI +SPK + ++ ++ + + +F R
Sbjct: 102 SGAFWQDVSDLCWITLSPKEHISPRYPVVSQMWRRASEIKLVIDVGDELEFYRSRLAENS 161
Query: 171 ---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
LQP ++ L ++ Q P +RLSVQ HK+IG+
Sbjct: 162 TIPVFLQPQ-WTDIDRTLPLVLAKLKQFPGYRLSVQLHKYIGV 203
>gi|301169927|emb|CBW29531.1| predicted organic radical activating enzyme [Haemophilus influenzae
10810]
Length = 209
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++I EIF +LQGEG + G +VF RF CNL C +CDT +
Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNLD-----------CPWCDTPY-----NNFK 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++V Q+ + + + ++TGGEP + + ++ G+ +A+ETNG
Sbjct: 55 RWSVSQILEKV------RSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK+ K + E+++V + + + L P
Sbjct: 109 AIPAQIDYISTSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ + N I+ PKW+LS+QTHK IGI
Sbjct: 169 CEI-DGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208
>gi|330431519|gb|AEC16578.1| molybdenum cofactor biosynthesis protein A [Gallibacterium anatis
UMN179]
Length = 203
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 44/228 (19%)
Query: 1 MKL-YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ Y+I EIF +LQGEG + G AVF RF CNL C +CDTD+
Sbjct: 1 MQTEYAIVEIFESLQGEGFNTGMPAVFIRFGKCNL-----------ACPWCDTDY----- 44
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+++ L + ++ + ++TGGEP +Q ++ + G+ +++ET
Sbjct: 45 ---QTFSLMTLQQIADQ---VTAFSAKNIIITGGEPTIQPNLEKLLSYFKTLGYFLSIET 98
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIK-----GGQELKLVFPQVNVS---PENYIGFDFER 170
NG P ID+I SPK K + E+++V N+ E + +
Sbjct: 99 NGLKPVPPQIDYIATSPKRLYRHKYQQRCITHADEVRIVNDDENILSFCREIAKKIEAKH 158
Query: 171 FSLQPMDGPFLEENTNLAISYCFQ--------NPKWRLSVQTHKFIGI 210
+ L P + E N + + + KW+LS+QTHK +GI
Sbjct: 159 YFLSPCEQQ-GEMNL---LDTIRKLGQLNENTDIKWQLSIQTHKLVGI 202
>gi|15602049|ref|NP_245121.1| hypothetical protein PM0184 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720404|gb|AAK02268.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 209
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 37/222 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y+I EIF +LQGEG + G ++F RF CNL C +CDT +
Sbjct: 10 KYAIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTPY-------- 50
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGT 121
+Y L+ ++++ + ++TGGEP + L+ AL G+ +A+ETNG
Sbjct: 51 NQYTTWTLSKIVQK---VRSFSAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGL 107
Query: 122 IEPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVS--PENYIGFDFERFSLQ 174
P ID+I SPK K E+++V + ++ + + + L
Sbjct: 108 KSIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRIVADENVIAFCEQIEQQIRADHYYLS 167
Query: 175 PMDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
P + E N I+ PKW+LS+QTHK IGI
Sbjct: 168 PCE-VNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGI 208
>gi|145639292|ref|ZP_01794898.1| predicted methyltransferase [Haemophilus influenzae PittII]
gi|145271595|gb|EDK11506.1| predicted methyltransferase [Haemophilus influenzae PittII]
gi|309751168|gb|ADO81152.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE
[Haemophilus influenzae R2866]
Length = 211
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++I EIF +LQGEG + G +VF RF CNL C +CDT +
Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNLD-----------CPWCDTPY-----NNFK 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++V Q+ + + + ++TGGEP + + ++ G+ +A+ETNG
Sbjct: 57 RWSVSQILEKV------RSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK+ K + E+++V + + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ + N I+ PKW+LS+QTHK IGI
Sbjct: 171 CEI-DGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210
>gi|319776568|ref|YP_004139056.1| methyltransferase [Haemophilus influenzae F3047]
gi|317451159|emb|CBY87392.1| Predicted methyltransferase [Haemophilus influenzae F3047]
Length = 209
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++I EIF +LQGEG + G +VF RF CNL C +CDT +
Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNLD-----------CPWCDTPY-----NNFK 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++V Q+ + + + ++TGGEP + ++ ++ G+ +A+ETNG
Sbjct: 55 RWSVSQILEKV------RSFSSKNIIITGGEPTIVPEIEYLLEQFKSDGYFLAIETNGLK 108
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK+ K + E+++V + + + L P
Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ + N I+ PKW+LS+QTHK IGI
Sbjct: 169 CEI-DGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208
>gi|72536298|gb|AAZ73210.1| hypothetical protein [Escherichia coli]
Length = 202
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 49/219 (22%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-----------------QGTKGGRY 65
A+F R GC + C +CDT + K G
Sbjct: 1 PAIFIRLQGCPV-----------GCDWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAA 49
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE-P 124
+ + L +I Q R+ V+TGGEP + +PL L K GF +ET+GT E
Sbjct: 50 SSEDLLAVIGRQG----YTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVR 105
Query: 125 PQGIDWICVSPKAGC-------DLKIKGGQELKLV------FPQVNVSPENYIGFDFERF 171
W+ VSPK ++ E+K ++
Sbjct: 106 CTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVI 165
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 166 ALQPISQK--EDATRLCIDTCIAR-NWRLSMQTHKYLNI 201
>gi|145631238|ref|ZP_01787011.1| predicted organic radical activating enzyme [Haemophilus influenzae
R3021]
gi|144983165|gb|EDJ90660.1| predicted organic radical activating enzyme [Haemophilus influenzae
R3021]
Length = 211
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++I EIF +LQGEG + G +VF RF CNL C +CDT +
Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNLD-----------CPWCDTPY-----NNFK 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++V Q+ + + + ++TGGEP + + ++ G+ +A+ETNG
Sbjct: 57 RWSVSQILEKV------RSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK+ K + E+++V + + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ + N I+ PKW+LS+QTHK IGI
Sbjct: 171 CEI-DGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210
>gi|145633081|ref|ZP_01788813.1| predicted methyltransferase [Haemophilus influenzae 3655]
gi|145637058|ref|ZP_01792721.1| predicted methyltransferase [Haemophilus influenzae PittHH]
gi|319897344|ref|YP_004135540.1| methyltransferase [Haemophilus influenzae F3031]
gi|144986307|gb|EDJ92886.1| predicted methyltransferase [Haemophilus influenzae 3655]
gi|145269712|gb|EDK09652.1| predicted methyltransferase [Haemophilus influenzae PittHH]
gi|317432849|emb|CBY81214.1| Predicted methyltransferase [Haemophilus influenzae F3031]
Length = 209
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++I EIF +LQGEG + G +VF RF CNL C +CDT +
Sbjct: 11 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNLD-----------CPWCDTPY-----NNFK 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++V Q+ + + + ++TGGEP + + ++ G+ +A+ETNG
Sbjct: 55 RWSVSQILEKV------RSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 108
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK+ K + E+++V + + + L P
Sbjct: 109 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 168
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ + N I+ PKW+LS+QTHK IGI
Sbjct: 169 CEI-DGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 208
>gi|16273111|ref|NP_439345.1| hypothetical protein HI1189 [Haemophilus influenzae Rd KW20]
gi|68249735|ref|YP_248847.1| organic radical activating protein [Haemophilus influenzae
86-028NP]
gi|148826202|ref|YP_001290955.1| organic radical activating protein [Haemophilus influenzae PittEE]
gi|229844856|ref|ZP_04464994.1| predicted organic radical activating enzyme [Haemophilus influenzae
6P18H1]
gi|229846220|ref|ZP_04466332.1| predicted organic radical activating enzyme [Haemophilus influenzae
7P49H1]
gi|260581110|ref|ZP_05848931.1| organic radical activating protein [Haemophilus influenzae RdAW]
gi|260582119|ref|ZP_05849913.1| organic radical activating protein [Haemophilus influenzae NT127]
gi|329124080|ref|ZP_08252627.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Haemophilus aegyptius ATCC 11116]
gi|1723816|sp|P45097|Y1189_HAEIN RecName: Full=7-carboxy-7-deazaguanine synthase homolog
gi|1574116|gb|AAC22842.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|68057934|gb|AAX88187.1| predicted organic radical activating enzyme [Haemophilus influenzae
86-028NP]
gi|148716362|gb|ABQ98572.1| predicted organic radical activating enzyme [Haemophilus influenzae
PittEE]
gi|229811224|gb|EEP46941.1| predicted organic radical activating enzyme [Haemophilus influenzae
7P49H1]
gi|229812237|gb|EEP47928.1| predicted organic radical activating enzyme [Haemophilus influenzae
6P18H1]
gi|260092239|gb|EEW76181.1| organic radical activating protein [Haemophilus influenzae RdAW]
gi|260094751|gb|EEW78645.1| organic radical activating protein [Haemophilus influenzae NT127]
gi|309973347|gb|ADO96548.1| Probable 7-cyano-7-deazaguanine (preQ0) synthesis protein QueE
[Haemophilus influenzae R2846]
gi|327467505|gb|EGF13003.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Haemophilus aegyptius ATCC 11116]
Length = 211
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++I EIF +LQGEG + G +VF RF CNL C +CDT +
Sbjct: 13 FNIVEIFESLQGEGFNTGMPSVFVRFGKCNLD-----------CPWCDTPY-----NNFK 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++V Q+ + + + ++TGGEP + + ++ G+ +A+ETNG
Sbjct: 57 RWSVSQILEKV------RSFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID+I SPK+ K + E+++V + + + L P
Sbjct: 111 AIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSP 170
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ + N I+ PKW+LS+QTHK IGI
Sbjct: 171 CEI-DGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210
>gi|261380779|ref|ZP_05985352.1| radical SAM domain protein [Neisseria subflava NJ9703]
gi|284796241|gb|EFC51588.1| radical SAM domain protein [Neisseria subflava NJ9703]
Length = 211
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL C +CDTD++
Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 53 KFGMMSLSDILGRLKT---YTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109
Query: 123 EPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ E + + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYESGCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210
>gi|241759459|ref|ZP_04757563.1| NrdG protein [Neisseria flavescens SK114]
gi|241320241|gb|EER56574.1| NrdG protein [Neisseria flavescens SK114]
Length = 211
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/221 (31%), Positives = 99/221 (44%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
++ + L+D++ R ++TGGEP +Q L+ AL G+ + +ETNG
Sbjct: 53 KFGMMSLSDILGRLKT---YTARNVIITGGEPTIQPHLNTLLDALKAEGYFLCIETNGLN 109
Query: 123 EPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ E + + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYESSCIEKADEVRIVADGDVVAFCQEMERKIRAQHYYLSP 169
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210
>gi|85860085|ref|YP_462287.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
gi|85723176|gb|ABC78119.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
Length = 215
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 44/227 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF ++QGE G VF R +GCNL +C +CDT + +GT
Sbjct: 3 LKVNEIFYSIQGESSFIGIPCVFVRLTGCNL-----------RCSYCDTRYAYEEGT--- 48
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
+++ + D I +TGGEPL+Q + P LI+ L RG + +ETNG+
Sbjct: 49 LWDIPDILDRI------SSYHCPLVEITGGEPLIQKETPLLIRDLLDRGCHVLLETNGSR 102
Query: 123 E-------PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVN---VSPENYIGF 166
+ +D C S + E+K V + + E I
Sbjct: 103 PIRTIDERCVRIVDIKCPSSGESRSNDYRNLDDLTGQDEIKFVLGERKDYEFAKEILISR 162
Query: 167 DFERF-----SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ + L + R +Q HK +
Sbjct: 163 NLANRISHPPIFSPVTNSLDPK--KLVRWILEDHLPVRFQLQLHKIL 207
>gi|296315126|ref|ZP_06865067.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768]
gi|296838043|gb|EFH21981.1| radical SAM domain protein [Neisseria polysaccharea ATCC 43768]
Length = 212
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
+++ L+D+ R ++TGGEP +Q L+ L G+ + +ETNG
Sbjct: 54 TFSMMSLSDI---LGRLKAYAARNIIITGGEPTIQPHLDALLDTLKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 111 PAPPQIDYVATSPKAYYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRARHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|116749416|ref|YP_846103.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698480|gb|ABK17668.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 215
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 87/229 (37%), Gaps = 44/229 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF ++QGE G+AG VF R +GCNL +C +CDT + +G
Sbjct: 1 MALRVNEIFHSIQGESGYAGWPCVFVRLTGCNL-----------RCSYCDTRYAYDEG-- 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
+ L ++I + +TGGEPLLQ + P L+ L G + VETNG
Sbjct: 48 ----DFVTLREII---GRVRRFDCPLVEITGGEPLLQPETPELVAELLDLGHTVLVETNG 100
Query: 121 TIE-------PPQGIDWICVSPKAGCDLKIKG------GQELKLVF---PQVNVSPENYI 164
+++ + +D+ C S ++ E+K V + E
Sbjct: 101 SMDISVVDRRCVKIVDFKCPSSGESDANDMENLERLGSRDEIKCVIGTREDYEFAREIER 160
Query: 165 GFDF-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA + RL +Q HK I
Sbjct: 161 LAAERAGTGSTVCFSPVFGKLEPR--ELAEWILADRLRVRLGLQLHKII 207
>gi|255066205|ref|ZP_05318060.1| radical SAM domain protein [Neisseria sicca ATCC 29256]
gi|255049415|gb|EET44879.1| radical SAM domain protein [Neisseria sicca ATCC 29256]
Length = 212
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++++ L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 54 KFSMMSLSDILGRLKT---YTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ + + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRARHYYLSP 170
Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ G +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|320335721|ref|YP_004172432.1| Radical SAM domain-containing protein [Deinococcus maricopensis DSM
21211]
gi|319757010|gb|ADV68767.1| Radical SAM domain protein [Deinococcus maricopensis DSM 21211]
Length = 230
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 23/217 (10%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E F T QGEG H GR A F R GC C +CD+ + +
Sbjct: 1 MKYPVYERFYTWQGEGVHLGRAAYFVRLYGCP-----------QACPWCDSAGTWHRDYR 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ + I + +G V+TGGEP+L L+ AL+ G + +ET+G
Sbjct: 50 PDGVTLMTAHE-IAQAVAAESPDGAVVVITGGEPILFDLTALVDALHALGRRVHLETSGI 108
Query: 122 IEPPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGF----DFERFSL 173
+DW+ +SPK ++ E+K++ + D L
Sbjct: 109 APLRGHLDWVTLSPKPFGTPPLPEVVQRAHEVKIIVHDPSDIDAGLATLDGLPDDAVIWL 168
Query: 174 QPMDGPFLEEN---TNLAISYCFQNPKWRLSVQTHKF 207
P E + N +P+ R Q HK
Sbjct: 169 HPEWSRARERDPAVLNAITETVKASPRLRAGYQMHKL 205
>gi|226354845|ref|YP_002784585.1| organic radical activating enzyme [Deinococcus deserti VCD115]
gi|226316835|gb|ACO44831.1| putative Organic radical activating enzyme [Deinococcus deserti
VCD115]
Length = 230
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 85/220 (38%), Gaps = 29/220 (13%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E F T QGEG H GR A F R GC +C +CD+ + +
Sbjct: 1 MKYPVFERFYTWQGEGVHLGRAAYFVRLYGCP-----------QECPWCDSAGTWHKDYR 49
Query: 62 GG---RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
+ +A + ++ G V+TGGEP+L PL++AL+ G + +ET
Sbjct: 50 PAGVQLMTPEAIAACVAQESPEGAV----VVITGGEPILFDLTPLVEALHGLGRRVHLET 105
Query: 119 NGTIEPPQGIDWICVSPKA----GCDLKIKGGQELKLVFPQVNVSPENYIGF----DFER 170
+G IDW+ +SPK ++ E+K++ + + D
Sbjct: 106 SGIAPLRGAIDWVTLSPKPFGTLPLPSVVQQAHEVKIIVHDTSDIRDGLATLDGLKDDAV 165
Query: 171 FSLQPMDGPFLEEN---TNLAISYCFQNPKWRLSVQTHKF 207
L P E + N NP+ R Q HK
Sbjct: 166 IWLHPEWSKARERDAAVLNAITEAVKANPRLRAGYQMHKL 205
>gi|298370138|ref|ZP_06981454.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281598|gb|EFI23087.1| radical SAM domain protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 241
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 42 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 82
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 83 KFGMMSLSDILGRLKT---YAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 139
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ + + L P
Sbjct: 140 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARHYYLSP 199
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ + +T I P W+LSVQTHK+ GI
Sbjct: 200 CEQNSVMNIYDTIRQIGLLNSRPDASVHWQLSVQTHKWAGI 240
>gi|300112861|ref|YP_003759436.1| radical SAM domain-containing protein [Nitrosococcus watsonii
C-113]
gi|299538798|gb|ADJ27115.1| Radical SAM domain protein [Nitrosococcus watsonii C-113]
Length = 213
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK I EIF +LQGE G F R +GC L +C +CDT++
Sbjct: 1 MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEYAF---Q 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETN 119
G +D++ D++ E R+ +TGGEPL + L+ L G+E+++ET+
Sbjct: 47 GGNWMALDRILDVVAE------FGVRHVTVTGGEPLVQSACLELLTRLCDAGYEVSLETS 100
Query: 120 G-------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGF 166
G + +DW ++KLV +
Sbjct: 101 GALDISAIDCRVVKVMDWKTPGSGEEARNLYTNLAHLSSQDQVKLVLCNRHDYDWAKAVL 160
Query: 167 DFERF------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
D R P T+LA R+ +Q HK++
Sbjct: 161 DRHRLTEYCDVLFSPSHEQLSP--TDLADWILADRLPVRMQIQLHKYL 206
>gi|261401297|ref|ZP_05987422.1| radical SAM domain protein [Neisseria lactamica ATCC 23970]
gi|269208675|gb|EEZ75130.1| radical SAM domain protein [Neisseria lactamica ATCC 23970]
Length = 212
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + ++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 57 MMSLSDILGRLKA------YAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|77163686|ref|YP_342211.1| radical SAM domain-containing protein [Nitrosococcus oceani ATCC
19707]
gi|254436167|ref|ZP_05049674.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27]
gi|76882000|gb|ABA56681.1| Radical SAM domain protein [Nitrosococcus oceani ATCC 19707]
gi|207089278|gb|EDZ66550.1| radical SAM domain protein, putative [Nitrosococcus oceani AFC27]
Length = 213
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK I EIF +LQGE G F R +GC L +C +CDT++
Sbjct: 1 MKRLRITEIFYSLQGEARSVGWPTAFVRLTGCPL-----------RCHYCDTEYAF---Q 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETN 119
G +D + D + E R+ +TGGEPL + L+ L G+E+++ET+
Sbjct: 47 GGRWMALDGILDAVAE------FGVRHVTVTGGEPLAQSACLGLLTRLCDAGYEVSLETS 100
Query: 120 G-------TIEPPQGIDWICVSPKAGCD------LKIKGGQELKLVFPQVNVSP------ 160
G + +DW + ++KLV +
Sbjct: 101 GALDISAVDRRVIKVMDWKTPGSGEEARNLSTNLEHLSSQDQVKLVLCNRHDYDWAKGVL 160
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E + ++ P T+LA + R+ +Q HK++
Sbjct: 161 ERHRLTEYCEVLFSPSYEQLSP--TDLADWILADHLPVRMQIQLHKYL 206
>gi|294787822|ref|ZP_06753066.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453]
gi|294484115|gb|EFG31798.1| radical SAM domain protein [Simonsiella muelleri ATCC 29453]
Length = 205
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 38/223 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
++ I EIF TLQGEG + G +VF RF CNL C +CDT++
Sbjct: 5 IFRIVEIFETLQGEGYNTGMPSVFIRFGKCNL-----------ACHWCDTNY-------- 45
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
++ + L ++++ + + ++TGGEP +Q + + + L G+ IA+ETNG
Sbjct: 46 QQFEMMTLTQIMDQ---VYDYSAKNIIITGGEPTIQPQLEILLNRLKSEGYFIAIETNGL 102
Query: 122 IEPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFPQVNV---SPENYIGFDFERFSL 173
P+ ID+I SPK A + E+++V ++ +R+ L
Sbjct: 103 RAVPEQIDYIATSPKRLYANAYDKTCLSAADEVRIVVDSDDIFSFCEIIEQKIRAKRYYL 162
Query: 174 QPMDGPFLEENTNLAISYCFQ------NPKWRLSVQTHKFIGI 210
P + E N I+ + P W+LS+QTHK GI
Sbjct: 163 SPCEQ-NGEMNILATITLLGKLNARPNQPHWQLSIQTHKLCGI 204
>gi|33151750|ref|NP_873103.1| hypothetical protein HD0556 [Haemophilus ducreyi 35000HP]
gi|33147971|gb|AAP95492.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 209
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 35/217 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
EIF +LQGEG + G +F R CNL C +CDT++ + ++
Sbjct: 14 VEIFESLQGEGFNTGLPCIFIRLGKCNL-----------ACPWCDTNY-----NEYQKWT 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPP 125
++ + ++ + ++TGGEP L L++ L G+ +A+ETNG P
Sbjct: 58 LEMILAKVK------SYTAKNIIITGGEPTLYANLTILLEQLKNAGYWLAIETNGLKAVP 111
Query: 126 QGIDWICVSPKAGCDLKIKGG-----QELKLVFPQV--NVSPENYIGFDFERFSLQPMDG 178
ID+I SPK K + E+++V + L P +
Sbjct: 112 SQIDYIATSPKKMYQEKYQREYLTQADEVRIVVDDDVTEFCALIEQKIQAHHYYLSPCEI 171
Query: 179 P----FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
LE T L ++ PKW+LS+QTHK IGI
Sbjct: 172 EGKMNLLETITQLGQLNQRVNKPKWQLSIQTHKIIGI 208
>gi|309379630|emb|CBX21801.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 212
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 54 TFGMMSLSDILGRLKT---YTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKAYYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|260914430|ref|ZP_05920899.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325]
gi|260631531|gb|EEX49713.1| radical SAM domain protein [Pasteurella dagmatis ATCC 43325]
Length = 209
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y+I EIF +LQGEG + G ++F RF CNL C +CDT++
Sbjct: 11 YNIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTNY--------N 51
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+Y L+ ++++ + ++TGGEP + + + L G+ +A+ETNG
Sbjct: 52 QYTTWSLSQILQK---VRSFSAKNIIITGGEPTIVPKIEYLLDTLKAEGYFLAIETNGLK 108
Query: 123 EPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175
P ID+I SPK K E+++V + S + +R+ L P
Sbjct: 109 TIPSQIDYIATSPKRLYQHKYQQKCIPFANEVRIVADEDVFSFCEQIEQQIHADRYYLSP 168
Query: 176 MDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
+ E N I+ PKW+LS+QTHK IGI
Sbjct: 169 CEI-DGEMNLLETITQIGLLNQRVNKPKWQLSIQTHKLIGI 208
>gi|225077247|ref|ZP_03720446.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens
NRL30031/H210]
gi|224951391|gb|EEG32600.1| hypothetical protein NEIFLAOT_02302 [Neisseria flavescens
NRL30031/H210]
Length = 211
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL C +CDTD++
Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 53 KFGMMSLSDILGRLKT---YTARNIIITGGEPTIQPHLDTLLNALKTEGYFLCIETNGLN 109
Query: 123 EPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVS--PENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ E + + L P
Sbjct: 110 PAPPQIDYVATSPKACYVAKYEFSCIEKADEVRIVADGDVIAFCQEMERKIRAQHYYLSP 169
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 170 CEQDGVMNIYDTIRQIGVLNSRPDAPVHWQLSVQTHKWAGI 210
>gi|59800591|ref|YP_207303.1| hypothetical protein NGO0132 [Neisseria gonorrhoeae FA 1090]
gi|59717486|gb|AAW88891.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
Length = 335
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 136 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 176
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 177 TFGMMSLSDILGRLKT---YAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 233
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVF--PQVNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 234 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 293
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 294 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 334
>gi|91205678|ref|YP_538033.1| organic radical activating protein [Rickettsia bellii RML369-C]
gi|157826864|ref|YP_001495928.1| organic radical activating protein [Rickettsia bellii OSU 85-389]
gi|91069222|gb|ABE04944.1| Organic radical activating enzymes [Rickettsia bellii RML369-C]
gi|157802168|gb|ABV78891.1| Organic radical activating enzymes [Rickettsia bellii OSU 85-389]
Length = 225
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 70/219 (31%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
IF T+QGEG G A+F R GCNL C FCDT+F +D
Sbjct: 23 IFKTIQGEGIFVGVPAIFIRLGGCNL-----------ACDFCDTEF-----ENFETIKID 66
Query: 69 QLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-IEPP 125
+ + E+ + V+TGGEP+ Q L Q L ++ F++ +ETNGT
Sbjct: 67 DILSKVNLLALNSKNEQSVKLVVITGGEPMRQPIELLCQKLLEQDFKVQIETNGTLYRSL 126
Query: 126 QGIDWICVSPKAGCDLKIKGGQEL-------KLVFP----QVNVSPENYIGFDFERFSLQ 174
I SPKAG K ++L K + + ++ PE +Q
Sbjct: 127 PDEVSIICSPKAGKKGYSKIREDLLPKISAVKFIIAKNILEYSLIPEIGQTAYNIPVFVQ 186
Query: 175 PM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
PM D +EN LA+ ++ RLSVQTHKFIGI
Sbjct: 187 PMDQNDQKLNKENNELAVKLALES-GARLSVQTHKFIGI 224
>gi|291612993|ref|YP_003523150.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
gi|291583105|gb|ADE10763.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
Length = 218
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 54/225 (24%), Positives = 80/225 (35%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CDT + G
Sbjct: 9 LRISEIFYSLQGETSRVGLPTVFVRLTGCPL-----------RCSYCDTAYAFTGGQ--- 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
QL+ +++E RY +TGGEPL Q + ++AL G+E+++ET G +
Sbjct: 55 ---SMQLSAIMDE---VASYAPRYVTVTGGEPLAQKNCLFLLRALCDAGYEVSLETGGAL 108
Query: 123 EPPQGIDWICVSPK-------------AGCDLKIKGGQELKLV------FPQVNVSPENY 163
+ + G + E+K V + + +
Sbjct: 109 DVSGVDARVMKVLDIKTPGSGEVQKNLWGNLQHLGRHDEIKFVLCGEADYQWAKQVMQEH 168
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G T LA RL VQ HK +
Sbjct: 169 ALAQRCAVLFSPAQGQLAP--TELAEWILRDRLPVRLQVQLHKLL 211
>gi|291044537|ref|ZP_06570246.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291011431|gb|EFE03427.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 267
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 68 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 108
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ I R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 109 TFGMMSLSDILGRLKI---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 225
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 226 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 266
>gi|319779040|ref|YP_004129953.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis
MCE9]
gi|317109064|gb|ADU91810.1| Queuosine Biosynthesis QueE Radical SAM [Taylorella equigenitalis
MCE9]
Length = 222
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 43/227 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ I EIF +LQGEG + G A F R CNL G +CDT++ G
Sbjct: 18 FRIVEIFKSLQGEGFNTGMPATFVRLGRCNLACG-----------WCDTNYNSF-----G 61
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
++ ++ ++E+ + +LTGGEP + +V LI+A RG+ + +ETNG
Sbjct: 62 LKSLSEILQIVEDLGQSN------IILTGGEPSVHPNVELLIEAFKSRGYYLCIETNGIS 115
Query: 123 EPPQGIDWICVSPKAGCDLKI-----KGGQELKLVFPQVNVSPENYI--------GFDFE 169
+ P+GID+I +SPK + + E+++V + E+++ F+ +
Sbjct: 116 DVPEGIDYIAISPKYCYKERYEKVGLRYADEIRIVVDFNETNREDFLNWLQDINEKFNSK 175
Query: 170 RFSLQPMDGPFLEENTNLAISYC------FQNPKWRLSVQTHKFIGI 210
++ L P++ N I P+W LS+QTHK GI
Sbjct: 176 KYYLSPLE-HDGSMNIQQTIKIIGELNGLKIGPRWELSLQTHKLAGI 221
>gi|67458743|ref|YP_246367.1| organic radical activating protein [Rickettsia felis URRWXCal2]
gi|67004276|gb|AAY61202.1| Organic radical activating enzymes [Rickettsia felis URRWXCal2]
Length = 225
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 96/226 (42%), Gaps = 34/226 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ IF T+QGEG G A+F R GCNL C FCDT+F
Sbjct: 16 TKLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEF-----ED 59
Query: 62 GGRYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++ ++ + +E + EK V+TGGEP+ Q L Q L + F+I +ETN
Sbjct: 60 FKLVDIAEILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDQDFKIQIETN 119
Query: 120 GT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-----------D 167
GT I SPKAG + K ++L V I
Sbjct: 120 GTLYRSLPNEVSIICSPKAGKNGYSKIREDLLPKISAVKFIIAKNILEYSLIPEVGQTSY 179
Query: 168 FERFSLQPM---DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+QPM D +EN LA+ ++ RLS+QTHKF+GI
Sbjct: 180 NIPVFVQPMDQNDQSLNDENNELAVKLALES-GARLSLQTHKFLGI 224
>gi|167856373|ref|ZP_02479100.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755]
gi|167852511|gb|EDS23798.1| hypothetical protein HPS_10855 [Haemophilus parasuis 29755]
Length = 204
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/220 (30%), Positives = 96/220 (43%), Gaps = 35/220 (15%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF TLQGEG + G ++F RF CNL C +CDT++
Sbjct: 6 YRIVEIFETLQGEGFNTGMPSIFIRFGKCNL-----------ACPWCDTNY--------N 46
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
+Y LAD+++ + + ++TGGEP +Q L+ L G+ IA+ETNG
Sbjct: 47 QYETKTLADIMQ---VVKGFSAKNIIITGGEPTIQLDLTYLLDTLKAEGYFIAIETNGLK 103
Query: 123 EPPQGIDWICVSPKA-----GCDLKIKGGQELKLVFPQVNVSPENYIG--FDFERFSLQP 175
P ID+I SPK I E+++V ++ I ER+ L P
Sbjct: 104 PVPPQIDYIATSPKRLYQKNYLKHHIPFANEVRIVVDGDVLAFCEQIESTIKAERYYLSP 163
Query: 176 MDGPFLEENTNLAISYCF-----QNPKWRLSVQTHKFIGI 210
+ + P+W+LS+QTHK GI
Sbjct: 164 CEENGVMNMLETITQLGKLNQRPNKPRWQLSIQTHKMAGI 203
>gi|117923944|ref|YP_864561.1| radical SAM protein [Magnetococcus sp. MC-1]
gi|117607700|gb|ABK43155.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
Length = 204
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/216 (31%), Positives = 93/216 (43%), Gaps = 24/216 (11%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y+I +IF ++QGE H G VF RFSGC L +C +CD + Q K
Sbjct: 4 TYAICDIFHSIQGEATHTGLPMVFIRFSGCPL-----------RCSWCDEP-LHRQADKA 51
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
+ QL I E +LTGGEPL+ + L+ +G+ IA+ET G
Sbjct: 52 EHLTLTQLRSRILELAP----HTTNLLLTGGEPLMAPHLDRLVDYFKDQGYWIAMETCGE 107
Query: 122 -IEPPQGIDWICVSPKAGCDLK-IKGGQELKLVF--PQVNVSPENYIGFDFERFSLQPMD 177
E P +DW+ +SPK + E+KLV E LQP
Sbjct: 108 GGEIPAEVDWVTLSPKNQLPQSLYERADEVKLVLGADADQSDKERLTQCHHPNLWLQPRA 167
Query: 178 GPFL--EENTNLAISYCFQNPK-WRLSVQTHKFIGI 210
P L + ++ WRLS+QTHK+IG+
Sbjct: 168 LPTGPDPMAVALCYRWALESGGAWRLSLQTHKYIGV 203
>gi|53804445|ref|YP_113696.1| radical activating enzyme family protein [Methylococcus capsulatus
str. Bath]
gi|53758206|gb|AAU92497.1| radical activating enzyme family protein [Methylococcus capsulatus
str. Bath]
Length = 215
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/224 (23%), Positives = 84/224 (37%), Gaps = 42/224 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF +LQGE G VF R +GC L +C +CDT + + G R
Sbjct: 7 RITEIFFSLQGETRTVGLPTVFVRLTGCPL-----------RCSYCDTAYAF---SGGER 52
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
++ ++ + + G RY +TGGEPL Q +PL+ AL G+++++ET G +
Sbjct: 53 MSIAEIVERV------GRYGARYVTVTGGEPLAQKACLPLLTALCDEGYQVSLETGGAHD 106
Query: 124 PPQGIDWIC-----VSPKAGCDLKI--------KGGQELKLVFPQVNVSPENYIGFDF-- 168
+ +P +G + + G ++K V D
Sbjct: 107 ISAVDPRVVRVVDLKTPGSGEASRNLYANVDALRQGDQVKFVIADRPDYDWAVAKLDEHR 166
Query: 169 ----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA R +Q HK +
Sbjct: 167 LAERCEILFSPVAGALQPA--QLAEWILRDRLPVRFQLQLHKLL 208
>gi|240114982|ref|ZP_04729044.1| hypothetical protein NgonPID1_01797 [Neisseria gonorrhoeae PID18]
gi|260441203|ref|ZP_05795019.1| hypothetical protein NgonDG_08991 [Neisseria gonorrhoeae DGI2]
gi|268600650|ref|ZP_06134817.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268584781|gb|EEZ49457.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
Length = 212
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ I R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 54 TFGMMSLSDILGRLKI---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|313668991|ref|YP_004049275.1| hypothetical protein NLA_17110 [Neisseria lactamica ST-640]
gi|313006453|emb|CBN87916.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 212
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 54 TFGMMSLSDILGRLKT---YTVRNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRARHYYLSP 170
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|37522605|ref|NP_925982.1| hypothetical protein gll3036 [Gloeobacter violaceus PCC 7421]
gi|35213606|dbj|BAC90977.1| gll3036 [Gloeobacter violaceus PCC 7421]
Length = 214
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++E F T+QGEG AG V F R GC + C +CDT + G
Sbjct: 17 PVQETFGPTIQGEGYWAGAVVDFIRLYGCPV-----------GCPWCDTGYA--DGGPQL 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
V +DLI E V++GGEP + +P L++A+ + G +A+ET+G
Sbjct: 64 PRAVRTFSDLILELK------SPRVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAF 117
Query: 123 EPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM----- 176
P W+ +SPK + ++ +V + D R L P
Sbjct: 118 WQPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGAELDVYRRFLPPGVPVSL 177
Query: 177 --DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ E L + +P++RLSVQ HK++ +
Sbjct: 178 QPEWEARERTLPLTLELLKAHPRYRLSVQLHKYLQV 213
>gi|217969210|ref|YP_002354444.1| radical SAM protein [Thauera sp. MZ1T]
gi|217506537|gb|ACK53548.1| Radical SAM domain protein [Thauera sp. MZ1T]
Length = 223
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIF +LQGE G VF R +GC L +C +CDT + + G
Sbjct: 13 RLRITEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCTWCDTAYAF---SGG 58
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
+D + + R+ +TGGEPL Q +PL+ AL G ++++ET+G
Sbjct: 59 ETRTLDDILAEV------ASHGLRHVCVTGGEPLAQKGCLPLLAALCDAGHDVSLETSGA 112
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLV------FPQVNVSPEN 162
++ + +P +G + + ELK V +
Sbjct: 113 LDIAGVDPRVSRIVDLKAPGSGELARNRWENLALLCAHDELKFVLADAADYAWARQQIAE 172
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + L P+ G LA R +Q HK +
Sbjct: 173 HRLAERCGVLLSPVAGALDPA--ELAGWIVRDRLPVRFQLQLHKIL 216
>gi|261378237|ref|ZP_05982810.1| radical SAM domain protein [Neisseria cinerea ATCC 14685]
gi|269145315|gb|EEZ71733.1| radical SAM domain protein [Neisseria cinerea ATCC 14685]
Length = 212
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G A+F R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAIFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+++ L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 54 TFDIMSLSDILGRLKT---YAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPK K + E+++V V+ + R+ L P
Sbjct: 111 PAPPQIDYVATSPKVCYADKYETNCIAEADEVRIVADGDVVAFCENMERKIRARRYYLSP 170
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211
>gi|256823062|ref|YP_003147025.1| Radical SAM domain-containing protein [Kangiella koreensis DSM
16069]
gi|256796601|gb|ACV27257.1| Radical SAM domain protein [Kangiella koreensis DSM 16069]
Length = 213
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 54/228 (23%), Positives = 78/228 (34%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M I EIF +LQGE G VF R +GC L +C +CDTD+
Sbjct: 1 MSKLRITEIFHSLQGESLTVGVPTVFVRLTGCPL-----------RCVYCDTDYAF---G 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
G +++ I++ + +TGGEPL Q V + L G++++ ET
Sbjct: 47 GGEWMRFEEILAEIKQ------YGCEHVCITGGEPLAQKRVFEFFKLLGDEGYKVSTETG 100
Query: 120 GTIEPPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSP------ 160
G + + V +K ++K V
Sbjct: 101 GAHDISPVDKRVMVVMDLKTPDSQEMARNLYSNIELLKPTDQVKFVICSRKDYEWCKMTV 160
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E Y P G E +LA K R+ VQ HK I
Sbjct: 161 EQYDITSKCEVLFSPSYGQV--EYADLAEWILKDRLKVRMQVQLHKII 206
>gi|154149814|ref|YP_001403432.1| radical SAM domain-containing protein [Candidatus Methanoregula
boonei 6A8]
gi|153998366|gb|ABS54789.1| Radical SAM domain protein [Methanoregula boonei 6A8]
Length = 202
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 93/224 (41%), Gaps = 40/224 (17%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF +LQGEG G +F R +GCNL CR+CDT + GT+
Sbjct: 2 KIAEIFKSLQGEGVRQGTPCIFIRLAGCNL-----------ACRWCDTQYARSGGTE--- 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
++EE W R +TGGEPLLQ D +PL+ +L+KRG I +ETNGTI
Sbjct: 48 ---TSCDKILEEIWKEN---PRSVCITGGEPLLQTDVLLPLLASLHKRGITIDIETNGTI 101
Query: 123 EPPQ-------GIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ +D C S DL +I+ +K V +
Sbjct: 102 DFSPVQPFAAVCMDVKCPSSGERSDLSLLARIRPTDSVKFVVGDLADCRYAQEVLARHAI 161
Query: 172 ----SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L P+ G + + N R +Q HK +G++
Sbjct: 162 AGECFLSPVYGTDCDTIVRFILD---NNLPVRFQLQLHKILGVK 202
>gi|126180149|ref|YP_001048114.1| radical SAM domain-containing protein [Methanoculleus marisnigri
JR1]
gi|125862943|gb|ABN58132.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
Length = 202
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 40/223 (17%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF +LQGEG + GR F R +GCNL +C +CDT + G
Sbjct: 3 VSEIFRSLQGEGKNQGRPCTFIRLAGCNL-----------RCAWCDTPYAR---EGGEEM 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+V Q+ D + W+ + +TGGEPLLQ + L++ + G+ + +ETNGT +
Sbjct: 49 SVTQVLDRV---WLLRG---THICITGGEPLLQREDVLKLLEKFSLHGYTVEIETNGTCD 102
Query: 124 PPQGIDWICVSPKAGCDLKIKG-----------GQELKLVFPQVNVSPENYIGFDFERF- 171
+ + C + +K V +
Sbjct: 103 FRDMQPYASICMDVKCPSSGEKSDLSLLSFITPRDCVKFVVADEDDLLYARAVMSRCEIR 162
Query: 172 ---SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ P++G +A +N R +Q HK +G++
Sbjct: 163 GEVFISPVEGSDY---RAVADQIVEENLPVRFQLQLHKILGVK 202
>gi|300869302|ref|ZP_07113893.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300332679|emb|CBN59091.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 210
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 3 LYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I E F T+QGEG +G + F R +GC + C +CDT + +
Sbjct: 9 KLPIHETFQSTVQGEGYWSGTLVDFIRLAGCPV-----------HCPWCDTGYS-----E 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GG+ + ++E + E + V++GGEP + ++P L+++L + G ++++ET+G
Sbjct: 53 GGKDLPNVQRSIVE---LLTELKSPRVVISGGEPFIHKNLPLLVESLLEVGKQVSIETSG 109
Query: 121 -TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER--------- 170
+ G WI +SPK + K ++ ++ + +F R
Sbjct: 110 SHWQEVAGETWITLSPKEHVNPKYPVQEKFWSRANEIKLVISTGEEVNFYRDGLVSNPNI 169
Query: 171 -FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP + + + QNP +RLS+QTHK IG++
Sbjct: 170 PVFLQP-EWSDRFRAIPIILQLLQQNPGYRLSLQTHKLIGVQ 210
>gi|307823680|ref|ZP_07653908.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
gi|307734974|gb|EFO05823.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
Length = 213
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 51/228 (22%), Positives = 79/228 (34%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M I EIF +LQGE G VF R +GC L +C +CDT +
Sbjct: 1 MSSLRITEIFHSLQGESNTVGLPTVFIRLTGCPL-----------RCVYCDTAYAFT--- 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
G + +D + E+ Y +TGGEPL Q + L+ L +G+ +++ET+
Sbjct: 47 GGEKIGIDAIIAQAEQ------YGTPYITVTGGEPLAQPSCLELMTKLLDKGYVVSLETS 100
Query: 120 G-------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPE----- 161
G + +D S + ++K V +
Sbjct: 101 GALDVSKVDQRVVKVMDLKTPSSGELSRNCYQNIEYLTAKDQVKFVIGNDSDYDWSKSIL 160
Query: 162 -NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
Y + P+ G T LA R +Q HK +
Sbjct: 161 TEYDLPNLCEVLFSPVMGQQNP--TELAEKILKDRLPVRFQLQLHKIL 206
>gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel]
gi|157784795|gb|ABV73296.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel]
Length = 225
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 100/226 (44%), Gaps = 34/226 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+K IF T+QGEG G A+F R GCNL C FCDT+F
Sbjct: 16 TKLEVKSIFKTIQGEGIFVGSPAIFVRLGGCNL-----------ACHFCDTEF-----ED 59
Query: 62 GGRYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++ ++ + +E + EK V+TGGEP+ Q L Q L R F++ +ETN
Sbjct: 60 FDLVDITEILNKVESLALNSKNEKSVNLVVITGGEPMRQPIALLCQKLLDRDFKVQIETN 119
Query: 120 GT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDF--------- 168
GT I SPKAG K ++L V + +N + + F
Sbjct: 120 GTLYRSLPNEVSIICSPKAGQTGYSKIREDLLSQISAVKFIVAKNILEYSFIPEVGQTAY 179
Query: 169 -ERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+QPMD +EN LA+ ++ +LS+QTHKF+GI
Sbjct: 180 NIPVFVQPMDQNNPKLNDENNALAVKLALESGS-KLSLQTHKFLGI 224
>gi|327481488|gb|AEA84798.1| radical activating enzyme [Pseudomonas stutzeri DSM 4166]
Length = 224
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE +G VF R +GC L +C++CDT + +
Sbjct: 12 MTLRITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 57
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
G +D + + + RY +TGGEPL Q + PL+Q L G+E+++ET+G
Sbjct: 58 GELMALDAILERVAA------YNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSG 111
Query: 121 TIEPPQGIDWIC--VSPKAGCD-----------LKIKGGQELKLVFPQVNVSPENYIGF- 166
++ + + V K + + ++K V
Sbjct: 112 ALDISPVDERVSRVVDLKTPGSAEVGRNRYENIVHLTRNDQVKFVICSREDYDWAVSKLI 171
Query: 167 ------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G LA N RL +Q HK I
Sbjct: 172 EYGLDRRAGEVLFSPSHGQVDVRA--LADWIVADNLPVRLQLQLHKII 217
>gi|146283135|ref|YP_001173288.1| radical activating enzyme [Pseudomonas stutzeri A1501]
gi|145571340|gb|ABP80446.1| probable radical activating enzyme [Pseudomonas stutzeri A1501]
Length = 213
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE +G VF R +GC L +C++CDT + +
Sbjct: 1 MTLRITEIFYSLQGETRTSGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SG 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
G +D + + + RY +TGGEPL Q + PL+Q L G+E+++ET+G
Sbjct: 47 GELMALDAILERVAA------YNPRYVCVTGGEPLAQPNCVPLLQRLCDAGYEVSLETSG 100
Query: 121 TIEPPQGIDWIC--VSPKAGCD-----------LKIKGGQELKLVFPQVNVSPENYIGF- 166
++ + + V K + + ++K V
Sbjct: 101 ALDISPVDERVSRVVDLKTPGSAEVGRNRYENIVHLTRNDQVKFVICSREDYDWAVSKLI 160
Query: 167 ------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G LA N RL +Q HK I
Sbjct: 161 EYGLARRAGEVLFSPSHGQVDVRA--LADWIVADNLPVRLQLQLHKII 206
>gi|268596173|ref|ZP_06130340.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268549961|gb|EEZ44980.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
Length = 267
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 92/221 (41%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 68 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 111
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 112 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 165
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 166 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 225
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 226 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 266
>gi|307352768|ref|YP_003893819.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
DSM 11571]
gi|307156001|gb|ADN35381.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
Length = 204
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 40/224 (17%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGEG + G + F R SGCNL +CR+CDT G+
Sbjct: 2 KVFEIFPSIQGEGPYQGIPSAFIRLSGCNL-----------RCRWCDTPKT-QDGSSSEE 49
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
VD++ +++ + + +TGGEPL+Q D L++ L++ G+ + +ETNGTI
Sbjct: 50 MTVDEVFGQVKKLGL------SHVCITGGEPLIQQDELLSLLKDLHEDGYIVEIETNGTI 103
Query: 123 EPPQGIDWICVSPK-----------AGCDLKIKGGQELKLVFPQVNVSPENYIGFD---- 167
+P +++ V A K++ +K V D
Sbjct: 104 DPVPVMEYSSVCMDIKCPSSGEKSFAPFVKKLRPSDCVKFVVEGKEDLEYMTGLLDDIPS 163
Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFIGI 210
+ + P+ G Y + R +Q HK +G+
Sbjct: 164 YVEVCVSPVWGSDS----RFIADYIMKLKRPVRFQLQLHKILGV 203
>gi|325127637|gb|EGC50553.1| radical SAM domain protein [Neisseria meningitidis N1568]
gi|325135881|gb|EGC58493.1| radical SAM domain protein [Neisseria meningitidis M0579]
gi|325202682|gb|ADY98136.1| radical SAM domain protein [Neisseria meningitidis M01-240149]
gi|325207572|gb|ADZ03024.1| radical SAM domain protein [Neisseria meningitidis NZ-05/33]
Length = 212
Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + ++ R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDILGRLKA------YAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|294669279|ref|ZP_06734358.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308689|gb|EFE49932.1| radical SAM domain protein [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 212
Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + L+D++ R ++TGGEP +Q + + G+ + +ETNG
Sbjct: 54 KFGMMSLSDILGRLKT---YAARNVIITGGEPTIQPHLDTLLDTFKAEGYFLCIETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCITEADEVRIVADGDVVAFCENMERKIRARHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPAHWQLSVQTHKWAGI 211
>gi|240013450|ref|ZP_04720363.1| hypothetical protein NgonD_02169 [Neisseria gonorrhoeae DGI18]
gi|240015889|ref|ZP_04722429.1| hypothetical protein NgonFA_01772 [Neisseria gonorrhoeae FA6140]
gi|240080029|ref|ZP_04724572.1| hypothetical protein NgonF_01775 [Neisseria gonorrhoeae FA19]
gi|240112239|ref|ZP_04726729.1| hypothetical protein NgonM_01409 [Neisseria gonorrhoeae MS11]
gi|240117266|ref|ZP_04731328.1| hypothetical protein NgonPID_02214 [Neisseria gonorrhoeae PID1]
gi|240120521|ref|ZP_04733483.1| hypothetical protein NgonPI_01854 [Neisseria gonorrhoeae PID24-1]
gi|240122820|ref|ZP_04735776.1| hypothetical protein NgonP_02565 [Neisseria gonorrhoeae PID332]
gi|240125015|ref|ZP_04737901.1| hypothetical protein NgonSK_02119 [Neisseria gonorrhoeae SK-92-679]
gi|254493044|ref|ZP_05106215.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268598297|ref|ZP_06132464.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268602962|ref|ZP_06137129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268681434|ref|ZP_06148296.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268683601|ref|ZP_06150463.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|226512084|gb|EEH61429.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268582428|gb|EEZ47104.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268587093|gb|EEZ51769.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268621718|gb|EEZ54118.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268623885|gb|EEZ56285.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
Length = 212
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 92/221 (41%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|218767651|ref|YP_002342163.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491]
gi|121051659|emb|CAM07962.1| hypothetical protein NMA0707 [Neisseria meningitidis Z2491]
gi|308388712|gb|ADO31032.1| hypothetical protein NMBB_0569 [Neisseria meningitidis alpha710]
Length = 212
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + ++ R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDILGRLKA------YAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|194097763|ref|YP_002000804.1| hypothetical protein NGK_0179 [Neisseria gonorrhoeae NCCP11945]
gi|239998266|ref|ZP_04718190.1| hypothetical protein Ngon3_02112 [Neisseria gonorrhoeae 35/02]
gi|193933053|gb|ACF28877.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|317163547|gb|ADV07088.1| hypothetical protein NGTW08_0112 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 212
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 170
Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ G +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|119477238|ref|ZP_01617474.1| probable radical activating enzyme [marine gamma proteobacterium
HTCC2143]
gi|119449601|gb|EAW30839.1| probable radical activating enzyme [marine gamma proteobacterium
HTCC2143]
Length = 214
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 54/229 (23%), Positives = 83/229 (36%), Gaps = 43/229 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + EIF +LQGE G VF R +GC L +C +CDT++
Sbjct: 1 MTDLRLTEIFYSLQGETRTVGLPTVFVRLTGCPL-----------RCAYCDTEYAFH--- 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
G ++++ + + + RY +TGGEPL Q + PL+ AL +G+E+++ET+
Sbjct: 47 GGEKWSLQAIQEKV------ASYHPRYVTVTGGEPLAQPNCWPLLTALCDQGYEVSLETS 100
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKG-------------GQELKLVFPQVNVSPENYIGF 166
G I + + ++K V
Sbjct: 101 GAISLLGVDSRVVKVMDLKTPASNEMSRNLYENIELLSPQDQIKFVICDRKDYEWARFKL 160
Query: 167 DFERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
D R P G E+ LA N R VQ HK +
Sbjct: 161 DEHRLVDRVDEVLFSPSFGQI--ESAELAEWILADNLPVRFQVQLHKLL 207
>gi|157825999|ref|YP_001493719.1| organic radical activating protein [Rickettsia akari str. Hartford]
gi|157799957|gb|ABV75211.1| Organic radical activating enzyme [Rickettsia akari str. Hartford]
Length = 225
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 34/226 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ IF T+QGEG G A+F R GCNL C FCDT+F
Sbjct: 16 TTLEVQSIFKTIQGEGLFVGGPAIFIRLGGCNL-----------ACNFCDTEF-----ED 59
Query: 62 GGRYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++ ++ + +E + + E V+TGGEP+ Q L Q L + F++ +ETN
Sbjct: 60 FKLVDIVEILNKVESLALNSKNERAINLVVITGGEPMRQPIELLCQKLLDQDFKVQIETN 119
Query: 120 GT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDF--------- 168
GT +I SPKAG K ++L V + +N + ++F
Sbjct: 120 GTLYRALPNEVYIICSPKAGKTGYSKIREDLLSQISAVKFIVAKNILEYNFIPEVGQTSY 179
Query: 169 -ERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+QPMD +EN LA+ ++ RLS+QTHK +GI
Sbjct: 180 NIPVFIQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKILGI 224
>gi|319639356|ref|ZP_07994107.1| NrdG protein [Neisseria mucosa C102]
gi|317399540|gb|EFV80210.1| NrdG protein [Neisseria mucosa C102]
Length = 211
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 38/222 (17%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL C +CDTD++
Sbjct: 12 YRIVEIFESLQGEGWNTGMPAVFIRLGKCNL-----------ACSWCDTDYL-------- 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 53 KFGMMSLSDILGRLKT---YTARNIIITGGEPTIQPHLDTLLNALKAEGYFLCIETNGLN 109
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVS--PENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ E + L P
Sbjct: 110 PAPPQIDYVATSPKACYAAKYEKSCIEKADEVRIVADGEVIAFCQEMERKIRARHYYLSP 169
Query: 176 MDGPFLEENTNLAISYC------FQNP-KWRLSVQTHKFIGI 210
+ N I P W+LSVQTHK+ GI
Sbjct: 170 CEQ-DGAMNIYDTIRQIGVLNSRADAPVHWQLSVQTHKWAGI 210
>gi|302879778|ref|YP_003848342.1| Radical SAM domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302582567|gb|ADL56578.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2]
Length = 219
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CDT + + G
Sbjct: 10 LRITEIFFSLQGETRLIGLPTVFVRLTGCPL-----------RCVYCDTAYAF---SGGK 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG-- 120
+ + ++ + + + RY +TGGEPL + +PL++AL G+++++ET+G
Sbjct: 56 NHTLAEILQQVAQ------YKTRYVTVTGGEPLAQRNCLPLLKALCDAGYQVSLETSGAL 109
Query: 121 -----TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------ENY 163
+ +D + + + E+K V N Y
Sbjct: 110 DIGAVDARVMRVVDIKTPASGEVDKNRWENLAILTPQDEIKFVLCDENDYDWACQILAQY 169
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
D P G T LA R +Q HK +
Sbjct: 170 HLADQCPVLFSPAQGDLDP--TQLADWILRDGLPVRFQLQLHKIL 212
>gi|110833622|ref|YP_692481.1| radical activating enzyme [Alcanivorax borkumensis SK2]
gi|110646733|emb|CAL16209.1| radical activating enzyme [Alcanivorax borkumensis SK2]
Length = 213
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF +LQGE GR VF R +GC +C +CDT++ +
Sbjct: 1 MELRLTEIFHSLQGESRTVGRPTVFVRLTGCP-----------QRCVWCDTEYAF---SG 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
G ++++ + + + +Y +TGGEPL Q +PL++ L G+++++ET G
Sbjct: 47 GEKWSLAAILEEVAAL------GAQYVTVTGGEPLAQPSCLPLLKTLCDEGYQVSLETGG 100
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKLVFPQVNVSPENYIGFDFERFSL- 173
++ + + V + L QV + +D+ RF L
Sbjct: 101 AMDIAGVDERVSVVMDLKAPGSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFMLD 160
Query: 174 -------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G + LA R +Q HK +
Sbjct: 161 QYQLHQRVSDVLFSPVQGTLAPGD--LANWIVEDRLPVRFQLQLHKLL 206
>gi|240127528|ref|ZP_04740189.1| hypothetical protein NgonS_02574 [Neisseria gonorrhoeae SK-93-1035]
gi|268685904|ref|ZP_06152766.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268626188|gb|EEZ58588.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 212
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 95/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 54 TFGMMSLSDILGRLKT---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVF--PQVNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 111 PVPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|152987293|ref|YP_001349882.1| radical activating enzyme [Pseudomonas aeruginosa PA7]
gi|150962451|gb|ABR84476.1| probable radical activating enzyme [Pseudomonas aeruginosa PA7]
Length = 215
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + RY +TGGEPL Q + +PL++ L G+E+++ET+G
Sbjct: 49 GEIVSLDAILERVAAYKP------RYICVTGGEPLAQPNCIPLLERLCDAGYEVSLETSG 102
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 103 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTANDQVKFVVCSREDYDWAVSKLI 162
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 163 EYRLEQRTGEVLFSPSHRQVDAR--ELADWIVADNLPVRLQLQLHKIL 208
>gi|157964748|ref|YP_001499572.1| organic radical activating protein [Rickettsia massiliae MTU5]
gi|157844524|gb|ABV85025.1| Organic radical activating enzyme [Rickettsia massiliae MTU5]
Length = 231
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 98/227 (43%), Gaps = 36/227 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ IF T+QGEG G A+F R GCNL C FCDT+F
Sbjct: 22 TKLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEF-----ED 65
Query: 62 GGRYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++DQ+ + +E + EK V+TGGEP+ Q L Q L R ++ +ETN
Sbjct: 66 FDLVDIDQILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETN 125
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGF 166
G PQ + IC SPKAG K +EL V + PE
Sbjct: 126 GTLYRSLPQEVSIIC-SPKAGKTGYSKIREELLPKISAVKFIVAKNILEYSLIPEVGQTS 184
Query: 167 DFERFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+QPMD EN LA+ ++ RLS+QTHKF+ I
Sbjct: 185 YNIPVFIQPMDQNDQRLNGENNELAVKLALES-GARLSLQTHKFLNI 230
>gi|239948218|ref|ZP_04699971.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922494|gb|EER22518.1| queuosine biosynthesis protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 225
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 97/227 (42%), Gaps = 36/227 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ IF T+QGEG G A+F R GCNL C FCDT+F
Sbjct: 16 TKLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEF-----ED 59
Query: 62 GGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++D++ + +E EK V+TGGEP+ Q L L F++ +ETN
Sbjct: 60 FDLVDIDKILNKVEILALNSKNEKSINLVVITGGEPMRQPIELLCHKLLDLDFKVQIETN 119
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGF 166
G P+G+ IC SPKAG K + L V + PE
Sbjct: 120 GTLYRSLPKGVSIIC-SPKAGKTGYSKIRENLLPKISAVKFIVAKNILEYSIIPEVGQTS 178
Query: 167 DFERFSLQPMDGP---FLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+QPMD +EN LA+ ++ RLS+QTHKF+ I
Sbjct: 179 YNIPVFIQPMDQNNQRLNDENNELAVKLALES-GARLSLQTHKFLNI 224
>gi|268594121|ref|ZP_06128288.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268547510|gb|EEZ42928.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
Length = 240
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 41 YRIVEIFESLQGEGRNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 84
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 85 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLK 138
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 139 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVLAFCENMERKIRARHYYLSP 198
Query: 176 MD--GPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ G +T I P W+LSVQTHK+ GI
Sbjct: 199 CEQNGVMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 239
>gi|82703824|ref|YP_413390.1| radical SAM family protein [Nitrosospira multiformis ATCC 25196]
gi|82411889|gb|ABB75998.1| Radical SAM [Nitrosospira multiformis ATCC 25196]
Length = 234
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIFL+LQGE G VF R +GC L +C +CDT + + G
Sbjct: 25 LRVNEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAFHE---GE 70
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R ++ + + R+ +TGGEPL Q + + L++ L G+ +++ET G +
Sbjct: 71 RLSLAAILMEVAR------HGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGAL 124
Query: 123 EPPQGIDWIC-----VSPKAGCDLKI--------KGGQELKLVFPQVN---VSPENYIGF 166
+ + + +P +G K E+K V + + E
Sbjct: 125 DISKVDARVSRILDLKTPGSGEVEKNLWSNVQYLTSHDEVKFVLCDEDDYRWAVEMMGKH 184
Query: 167 DFER---FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ G T LA R+ VQ HK +
Sbjct: 185 RLDHTCPVLFSPVHGKLEP--TVLAEWILRDRLPVRMQVQLHKLL 227
>gi|329893688|ref|ZP_08269822.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
IMCC3088]
gi|328923615|gb|EGG30927.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
IMCC3088]
Length = 230
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 83/230 (36%), Gaps = 47/230 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE G VF R +GC L +C +CDT++ G
Sbjct: 18 QTLRISEIFYSLQGETRTLGLPTVFIRLTGCPL-----------RCVYCDTEYAFHGG-- 64
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
L D++E+ R+ +TGGEPL Q + PL+Q L G+E+++ET+G
Sbjct: 65 ----TQIALGDILEQ---AAAFNTRFVTVTGGEPLAQPNCWPLLQMLCDEGYEVSLETSG 117
Query: 121 TIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFD 167
+ + + ++K V + ++ F
Sbjct: 118 ALSVADVDARVVKVLDLKTPGSGESHRNDYENIALLNLHDQVKFVIT--DREDYDWARFK 175
Query: 168 FER---------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ G T LA R +Q HK +
Sbjct: 176 VDELGLVGRVSDILFSPVHGKLTP--TQLADWILADRLPVRFQLQLHKLL 223
>gi|254516700|ref|ZP_05128759.1| radical SAM domain protein [gamma proteobacterium NOR5-3]
gi|219675123|gb|EED31490.1| radical SAM domain protein [gamma proteobacterium NOR5-3]
Length = 226
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 83/230 (36%), Gaps = 47/230 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE G VF R +GC L +C +CDT++
Sbjct: 14 QTLRITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEYAFH---G 59
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G + +A + + Y +TGGEPL Q + +PL+ L +G+E+++ET+G
Sbjct: 60 GEIMTFEHIAGQVAQHAPA------YVTVTGGEPLAQPNCLPLLSLLCDQGYEVSLETSG 113
Query: 121 TIEPPQGIDWI--CVSPKAGCD-----------LKIKGGQELKLVFPQVNVSPENYIGFD 167
+ + + K + +LK V N + F
Sbjct: 114 AMPVADVDPRVVKVLDLKTPASGEAGRNDYANIEHLTSNDQLKFVICDRN--DYEWARFK 171
Query: 168 FERFSL---------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +L P LA RL +Q HK +
Sbjct: 172 LDELALVPRVSDVLFSPSHEQLAPR--ELAEWILADRLPVRLQLQLHKLL 219
>gi|261364119|ref|ZP_05977002.1| radical SAM domain protein [Neisseria mucosa ATCC 25996]
gi|288567697|gb|EFC89257.1| radical SAM domain protein [Neisseria mucosa ATCC 25996]
Length = 212
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 54 KFGMMSLSDILGRLKT---YTARNIIITGGEPTIQPHLDTLLDALKAEGYFLCIETNGLK 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYETNCIAEADEVRIVADGDVVAFCENMERKIRARYYYLSP 170
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIHQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|15676436|ref|NP_273574.1| hypothetical protein NMB0529 [Neisseria meningitidis MC58]
gi|7225754|gb|AAF40959.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316985383|gb|EFV64331.1| radical SAM superfamily protein [Neisseria meningitidis H44/76]
gi|325139736|gb|EGC62270.1| radical SAM domain protein [Neisseria meningitidis CU385]
gi|325200783|gb|ADY96238.1| radical SAM domain protein [Neisseria meningitidis H44/76]
Length = 212
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 54 TFGMMGLSDILGRLKT---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211
>gi|254669979|emb|CBA04660.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
Length = 212
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 54 TFGMMGLSDILGRLKT---YAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|163781704|ref|ZP_02176704.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882924|gb|EDP76428.1| hypothetical protein HG1285_02438 [Hydrogenivirga sp. 128-5-R1-1]
Length = 218
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 60/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
S+ EI+ ++QGEG G ++F R GCNL +C +CD
Sbjct: 12 LSVNEIYESIQGEGLLVGTPSIFIRLQGCNL-----------RCPWCDQPEAL--SFSNT 58
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
V+ + ++E R+ V+TGGEP ++ + ++AL + GF + +ETNGT+
Sbjct: 59 TIPVEGILQKVQE------FPARHVVITGGEPFAHQNLHVLVRALIEEGFSLQIETNGTL 112
Query: 123 EPPQ-----GIDWICVSPKA-----GCDLKIKGGQELKLVFPQ-----VNVSPENYIGFD 167
I SPKA IK ELK V + V + E
Sbjct: 113 WNEGLDSMAEQVHITCSPKAAANFFVNPRVIKHTNELKFVVDEEFSSDVVLREEFRGLLL 172
Query: 168 FERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
E+ LQP FL + ++ + K R+ Q HK +G
Sbjct: 173 AEKVVLQPEGNKVSFLRKALDIQRELSLKGFKVRVIPQVHKLLG 216
>gi|319409907|emb|CBY90232.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 212
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211
>gi|254427312|ref|ZP_05041019.1| radical SAM domain protein [Alcanivorax sp. DG881]
gi|196193481|gb|EDX88440.1| radical SAM domain protein [Alcanivorax sp. DG881]
Length = 213
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF +LQGE GR VF R +GC +C +CDT++ +
Sbjct: 1 MELRLTEIFHSLQGESRTVGRPTVFVRLTGCP-----------QRCVWCDTEYAF---SG 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++ + + + + +Y +TGGEPL Q + +PL+ AL G+++++ET G
Sbjct: 47 GEKWTLAAIREQVAA------HGAQYVTVTGGEPLAQPNCLPLLTALCDDGYQVSLETGG 100
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQ------ELKLVFPQVNVSPENYIGFDFERFSL- 173
++ + + V + L QV + +D+ RF L
Sbjct: 101 AMDIAGVDERVSVVMDLKAPGSGEQHNNRLENIPLLKAHHQVKFVLADRKDYDWARFMLD 160
Query: 174 -------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ LA R +Q HK++
Sbjct: 161 QHQLHKRVSDVLFSPVQDGLAPG--ELADWIVADRLPVRFQLQLHKYL 206
>gi|254490155|ref|ZP_05103346.1| radical SAM domain protein, putative [Methylophaga thiooxidans
DMS010]
gi|224464641|gb|EEF80899.1| radical SAM domain protein, putative [Methylophaga thiooxydans
DMS010]
Length = 213
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M I EIF +LQGE G VF R +GC L +C +CDT++ G
Sbjct: 1 MAQCRITEIFYSLQGESRTVGLPTVFVRLTGCPL-----------RCGYCDTEYAFYGGQ 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
K ++D++E+ + RY +TGGEPL Q + +PL+ AL G E+++ET+
Sbjct: 50 K------MDISDIVEQ---VAAYKPRYVCVTGGEPLAQPNCIPLLTALCDLGVEVSIETS 100
Query: 120 GTIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSP------ 160
G ++ + + + + +LK V
Sbjct: 101 GAMDISKVDPRVIRVMDLKTPGSGEESKNRYENIALLESKDQLKFVICHREDYDWACETL 160
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
Y D P+ G + LA N R+ +Q HK++
Sbjct: 161 AEYQLSDRCEVLFSPIHGELKPAD--LADWIVEDNLPVRMQLQLHKYL 206
>gi|161869455|ref|YP_001598622.1| hypothetical protein NMCC_0466 [Neisseria meningitidis 053442]
gi|161595008|gb|ABX72668.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 212
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|293397670|ref|ZP_06641876.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|291611616|gb|EFF40685.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 241
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++
Sbjct: 42 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYL-------- 82
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+ + L+D++ R ++TGGEP +Q + + AL G+ + +ETNG
Sbjct: 83 TFGMMSLSDILGRLKT---YAARNIIITGGEPTIQPHLDTLLDALKAEGYFLCLETNGLK 139
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVF--PQVNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 140 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDAVGFCENMERKIRAHHYYLSP 199
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 200 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 240
>gi|325133661|gb|EGC56318.1| radical SAM domain protein [Neisseria meningitidis M13399]
gi|325143843|gb|EGC66158.1| radical SAM domain protein [Neisseria meningitidis M01-240013]
gi|325206619|gb|ADZ02072.1| radical SAM domain protein [Neisseria meningitidis M04-240196]
Length = 212
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211
>gi|146306312|ref|YP_001186777.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp]
gi|145574513|gb|ABP84045.1| Radical SAM domain protein [Pseudomonas mendocina ymp]
Length = 226
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CDT +
Sbjct: 12 MQETLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYAF--- 57
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G +D + D + RY +TGGEPL Q + +PL+ L G+E+++ET
Sbjct: 58 SGGEIVTLDSILDQVAA------YRPRYVCVTGGEPLAQPNCIPLLTRLCDAGYEVSLET 111
Query: 119 NGTIEPPQGIDWICVSPK---AGCDLKIKGGQE----------LKLVFPQVNVSPENYIG 165
+G ++ + G + E +K V
Sbjct: 112 SGALDVSAVDPRVSKVLDLKTPGSAEVQRNRYENIEWLTANDQVKFVICSREDYDWAVSK 171
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P E LA N RL +Q HK +
Sbjct: 172 LIQYDLPARAGEVLFSP--SHKQVEARALADWIVADNLPVRLQLQLHKIL 219
>gi|261393100|emb|CAX50697.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|325203620|gb|ADY99073.1| radical SAM domain protein [Neisseria meningitidis M01-240355]
Length = 212
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|71909659|ref|YP_287246.1| radical SAM family protein [Dechloromonas aromatica RCB]
gi|71849280|gb|AAZ48776.1| Radical SAM [Dechloromonas aromatica RCB]
Length = 212
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/227 (21%), Positives = 81/227 (35%), Gaps = 42/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE G VF R +GC L +C +CDT +
Sbjct: 1 MALRITEIFYSLQGEASRVGLPTVFVRLTGCPL-----------RCSWCDTTYSFT---G 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
G V+ + + + R +TGGEPL + +PL+ AL G+++++ET+G
Sbjct: 47 GEAATVESVLAEV------AKYPARQVCVTGGEPLSQKDCLPLLAALCNAGYDVSLETSG 100
Query: 121 TIEPPQGIDWIC--VSPKAGCD-----------LKIKGGQELKLVFPQVNVSPENYIGFD 167
++ + + KA + E+K+V
Sbjct: 101 ALDVSAVDPRVARIMDLKAPDSAESARNLWENLTVLTPRDEIKIVIASRGDYEWARDVLR 160
Query: 168 FERF------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ P G + +LA R +Q HK +
Sbjct: 161 QKKLDQICSVLFSPAQGVIEPQ--SLAEWILEDGLNVRFQLQLHKLL 205
>gi|121634324|ref|YP_974569.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18]
gi|120866030|emb|CAM09768.1| hypothetical protein NMC0468 [Neisseria meningitidis FAM18]
gi|325129656|gb|EGC52471.1| radical SAM domain protein [Neisseria meningitidis OX99.30304]
gi|325131671|gb|EGC54376.1| radical SAM domain protein [Neisseria meningitidis M6190]
gi|325137687|gb|EGC60264.1| radical SAM domain protein [Neisseria meningitidis ES14902]
gi|325141739|gb|EGC64192.1| radical SAM domain protein [Neisseria meningitidis 961-5945]
gi|325197741|gb|ADY93197.1| radical SAM domain protein [Neisseria meningitidis G2136]
Length = 212
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGIPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V ++ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211
>gi|227827777|ref|YP_002829557.1| radical SAM protein [Sulfolobus islandicus M.14.25]
gi|227830487|ref|YP_002832267.1| radical SAM protein [Sulfolobus islandicus L.S.2.15]
gi|229579299|ref|YP_002837697.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
gi|229581941|ref|YP_002840340.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
gi|229585048|ref|YP_002843550.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
gi|238619949|ref|YP_002914775.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
gi|284997981|ref|YP_003419748.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
gi|227456935|gb|ACP35622.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15]
gi|227459573|gb|ACP38259.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25]
gi|228010013|gb|ACP45775.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012657|gb|ACP48418.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
gi|228020098|gb|ACP55505.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
gi|238381019|gb|ACR42107.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
gi|284445876|gb|ADB87378.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
gi|323477585|gb|ADX82823.1| Radical SAM domain protein [Sulfolobus islandicus HVE10/4]
Length = 208
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + EIF ++QGEG G + F R + CNL +C +CDT +
Sbjct: 1 MKYRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSW---EI 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G +D++ I+++ R +TGGEPLLQ VPL + L G +I +ETNGT
Sbjct: 47 GTEMTIDEIIAKIDKKI-------RTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGT 99
Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF---- 166
I+P + ID VSPK +G LK + K V N + I F
Sbjct: 100 IKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQ 159
Query: 167 --DFERFSLQP-MDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
+ + LQP + N + ++R+ Q H+ IG+R
Sbjct: 160 NINPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGVR 208
>gi|294055328|ref|YP_003548986.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
gi|293614661|gb|ADE54816.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
Length = 226
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 22/213 (10%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K + E F + QGEG HAGR A F R GC + C +CD+
Sbjct: 3 KQLPVHEQFYSFQGEGCHAGRAAYFIRLFGCPV-----------HCPWCDSAGTWHPDYV 51
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ DL+ T + V+TGGEP + L L + G+ + +ET+G
Sbjct: 52 PESIDRVLANDLLASVQKTA---AEFVVITGGEPAIHDLSELTAVLRRAGYPVHLETSGA 108
Query: 122 IEPPQGIDWICVSPKAGC---DLKIKGGQELKLVFPQVNVSPENYIG---FDFERFSLQP 175
E DW+ +SPK +K E KL+ ++ E L P
Sbjct: 109 FELKGVFDWVTLSPKRWKLPLPENLKRADEFKLIVDELGAIEEYARLPGVLRSVPVWLHP 168
Query: 176 MD-GPFLEENTNLAISYCFQN-PKWRLSVQTHK 206
+ + + + +R Q HK
Sbjct: 169 EWSQQRNQAILSAITEWVKAHGAPFRAGWQMHK 201
>gi|254804413|ref|YP_003082634.1| hypothetical protein NMO_0411 [Neisseria meningitidis alpha14]
gi|254667955|emb|CBA04204.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
Length = 212
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFLCIETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQP 175
P ID++ SPKA K + E+++V V+ + + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERKIRAHHYYLSP 170
Query: 176 MDGPFLEE--NTNLAISYCFQNP----KWRLSVQTHKFIGI 210
+ +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGI 211
>gi|325283487|ref|YP_004256028.1| Radical SAM domain-containing protein [Deinococcus proteolyticus
MRP]
gi|324315296|gb|ADY26411.1| Radical SAM domain protein [Deinococcus proteolyticus MRP]
Length = 285
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 74/216 (34%), Gaps = 23/216 (10%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
Y + E F T QGEG H GR A F R GC C +CD+ +
Sbjct: 57 KYPVYERFYTWQGEGVHLGRAAYFIRLYGCP-----------QHCPWCDSAGTWHPEYRP 105
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ L + ++TGGEP+L PL AL+ G + +ET+G
Sbjct: 106 ESVGLMDAQALADAVAAESPAGAV-VIITGGEPILFDLAPLTDALHAIGRRVHIETSGIA 164
Query: 123 EPPQGIDWICVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGF----DFERFSLQ 174
+DW+ +SPK + E+K++ + D L
Sbjct: 165 PLRGELDWVTLSPKPTQKWPLPEVVAHADEVKIIVHEPQDIAAGLATLDGLRDDAVIWLH 224
Query: 175 PMDGPFLEENT---NLAISYCFQNPKWRLSVQTHKF 207
P E N +P+ R Q HK
Sbjct: 225 PEWSRAREREMRVLNAITEAVKADPRLRAGYQMHKL 260
>gi|254482513|ref|ZP_05095752.1| radical SAM domain protein, putative [marine gamma proteobacterium
HTCC2148]
gi|214037204|gb|EEB77872.1| radical SAM domain protein, putative [marine gamma proteobacterium
HTCC2148]
Length = 222
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 43/226 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CDT++ + G
Sbjct: 12 LRITEIFYSLQGEARTVGVPTVFVRLTGCPL-----------RCVYCDTEYAF---SGGD 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
+++D + + + R+ +TGGEPL Q + + L+ L G+E+++ET+G +
Sbjct: 58 LFSIDDVVSRVAA------YQPRFVTVTGGEPLAQPNCLLLLTRLCDAGYEVSLETSGAM 111
Query: 123 EPPQGIDWICV--------SPKAGCDLKIKGG-----QELKLVFPQVNVSPENYIGFDFE 169
+ + S + G + ++K V + D
Sbjct: 112 TVAEVDSRVVKVIDLKTPASAEMGRNDYDNIPLLLPDDQVKFVICDRDDYEWARFKLDEY 171
Query: 170 RF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G LA N R+ +Q HK +
Sbjct: 172 QLPARVSDVLFSPSHGQLS--GRELAEWVLEDNLPVRMQLQLHKIL 215
>gi|193215257|ref|YP_001996456.1| radical SAM domain-containing protein [Chloroherpeton thalassium
ATCC 35110]
gi|193088734|gb|ACF14009.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
Length = 219
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 49/233 (21%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF ++QGE AG VF R SGC+L +C +CDT + G
Sbjct: 1 MLKVNEIFHSIQGESSKAGWPCVFIRLSGCDL-----------RCSYCDTGYAFFD---G 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
++ +++ + + + R +TGGEPLLQ +V PL+ AL + G+E+ +ET G
Sbjct: 47 KEFSQEEILEQV------AFYKTRLVEITGGEPLLQPNVYPLMTALCEAGYEVLLETGGH 100
Query: 122 IEPP-------QGIDWICVSPKAGCDLKIKGGQ-------------ELKLV------FPQ 155
+ + ID S + + + E K+V +
Sbjct: 101 HDVEKVDPRVYKIIDIKTPSSEMSEWNCYRNLELSIAEAKSGVLKTEFKIVLSSEGDYRW 160
Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E Y F G +A + RL +Q HK+I
Sbjct: 161 AKNLIERYDLARFVPVIFSAAFGALHPR--QIAEWILADHLPVRLQLQLHKYI 211
>gi|88705614|ref|ZP_01103324.1| radical activating enzyme [Congregibacter litoralis KT71]
gi|88700127|gb|EAQ97236.1| radical activating enzyme [Congregibacter litoralis KT71]
Length = 226
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/227 (22%), Positives = 80/227 (35%), Gaps = 43/227 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIF +LQGE G VF R +GC L +C +CDT++ G
Sbjct: 15 TLRITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCLYCDTEYAFH---GG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
+++ +AD + Y +TGGEPL Q + +PL+ L +G+E+++ET+G
Sbjct: 61 EIMSLEHIADQVAAHKPA------YVTVTGGEPLAQPNCLPLLSRLCDQGYEVSLETSGA 114
Query: 122 IEPPQGIDWICVSP-------------KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+ + G + ++K V D
Sbjct: 115 MSVAGVDPRVVKVLDLKTPASGEVARNDYGNVQYLTPNDQVKFVICDRGDYEWARFKLDE 174
Query: 169 ERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P LA + RL +Q HK++
Sbjct: 175 YTLGDRVSDVLFSPSHEQLAPR--ELAEWILGDGLQVRLQLQLHKYL 219
>gi|304388249|ref|ZP_07370369.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091]
gi|304337776|gb|EFM03925.1| radical SAM domain protein [Neisseria meningitidis ATCC 13091]
Length = 212
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 92/221 (41%), Gaps = 36/221 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y I EIF +LQGEG + G AVF R CNL G +CDTD++ G
Sbjct: 13 YRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACG-----------WCDTDYLTF-----G 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
++ + R ++TGGEP +Q + + + L G+ + +ETNG
Sbjct: 57 MMSLSDI------LGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLN 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQP 175
P ID++ SPKA K + E+++V V + L P
Sbjct: 111 PAPPQIDYVATSPKACYAAKYEKSCIAEADEVRIVADGDVVGFCENMERKIRAHHYYLSP 170
Query: 176 M--DGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIGI 210
DG +T I P W+LSVQTHK+ GI
Sbjct: 171 CEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGI 211
>gi|119896705|ref|YP_931918.1| putative radical activating enzyme [Azoarcus sp. BH72]
gi|119669118|emb|CAL93031.1| conserved hypothetical radical activating enzyme [Azoarcus sp.
BH72]
Length = 220
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ EIF ++QGE G F R +GC L +C +CDT + G
Sbjct: 10 KLRLTEIFASIQGESTRVGLPTTFVRLTGCPL-----------RCSWCDTAYAFT---GG 55
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
+ + D + + R+ +TGGEPL Q + L+ AL G+ +++ET+G
Sbjct: 56 EARALSDVLDDVAALGL------RHVCVTGGEPLAQKYCLALLTALCDAGYSVSLETSGA 109
Query: 122 IEPPQGIDWICVSP-------------KAGCDLKIKGGQELKLV------FPQVNVSPEN 162
++ + + ++ ELK+V + +
Sbjct: 110 LDIGGVDPRVSRVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADYDWARAMIAD 169
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ L P+ G LA R +Q HK +
Sbjct: 170 HDLAARCPVLLSPVAGTLDPA--QLAEWIVRDRLPVRFQLQLHKIL 213
>gi|91776688|ref|YP_546444.1| radical SAM family protein [Methylobacillus flagellatus KT]
gi|91710675|gb|ABE50603.1| Radical SAM [Methylobacillus flagellatus KT]
Length = 212
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 80/227 (35%), Gaps = 43/227 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGE G VF R +GC +C +CDT++ G+
Sbjct: 1 MLRIHEIFHSLQGESSRVGLPTVFVRLTGCP-----------MRCVYCDTEYAFKGGSN- 48
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+DQ+ + + RY +TGGEPL Q + L++ L G+E+++ET G
Sbjct: 49 --MTLDQIMEQV------ASYGARYVCVTGGEPLAQKKHCLELLRQLCDAGYEVSLETGG 100
Query: 121 TIEPPQGI-------DWICVSPKAGCDLKI------KGGQELKLV------FPQVNVSPE 161
I D K E+K+V +
Sbjct: 101 AIATDGVDERVAIILDIKTPDSGEVAKNHWDNLSRLKPNDEVKIVLCSRADYEWAKQLLA 160
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + P+ + LA R+ VQ HK +
Sbjct: 161 EHALNEKCAVIFSPVYSQVKPAD--LADWVLEDRLPVRMQVQLHKIL 205
>gi|114330319|ref|YP_746541.1| radical SAM domain-containing protein [Nitrosomonas eutropha C91]
gi|114307333|gb|ABI58576.1| Radical SAM domain protein [Nitrosomonas eutropha C91]
Length = 211
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/226 (21%), Positives = 83/226 (36%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF +LQGE G VF R +GC L +C +CDT + + G
Sbjct: 1 MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPL-----------RCGYCDTSYAF---SGG 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGT 121
++ ++ + Y +TGGEPL + L+ AL RG+ +++ET+G
Sbjct: 47 ESMDISEIMRKV------ASFSPHYVTVTGGEPLAQADSLTLLTALCDRGYSVSLETSGA 100
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQV---NVSPENYIG 165
++ + + +P +G K E+K V N + + +
Sbjct: 101 LDISRVDTRVSRILDIKTPGSGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQKLLT 160
Query: 166 FDFERFS---LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ LA RL Q HK +
Sbjct: 161 LELANICPVLFSPVYNQLDPAA--LAAWILQDRLPVRLQFQLHKLL 204
>gi|30248245|ref|NP_840315.1| radical activating enzyme [Nitrosomonas europaea ATCC 19718]
gi|30180130|emb|CAD84132.1| Radical activating enzymes [Nitrosomonas europaea ATCC 19718]
Length = 211
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF +LQGE G VF R +GC L +C +CDT + + G
Sbjct: 1 MLRITEIFYSLQGETSRMGLPTVFVRLTGCPL-----------RCGYCDTGYAF---SGG 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
++ ++ + RY +TGGEPL Q D + + AL RG+ +++ET+G
Sbjct: 47 KSMSISEIMGEV------ASFSPRYVTVTGGEPLAQADSLVLLAALCDRGYSVSLETSGA 100
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQV---NVSPENYIG 165
++ + + +P +G K E+K V + + + +
Sbjct: 101 LDIARVDARVSRIVDIKTPGSGEVEKNHWNNLAYLTSHDEIKFVLCDRADYDWARQKLLE 160
Query: 166 FDFERFS---LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G + + LA RL +Q HK +
Sbjct: 161 LKLDVICPVLFSPAYGQLVPAD--LAAWILQDQLPVRLQLQLHKLL 204
>gi|257454238|ref|ZP_05619508.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60]
gi|257448411|gb|EEV23384.1| radical SAM domain protein [Enhydrobacter aerosaccus SK60]
Length = 240
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE AG +F R +GC L +C +CDT++ + G
Sbjct: 22 LKVTEIFYSLQGEALSAGLPTIFIRLTGCPL-----------RCVYCDTEYAFV---GGE 67
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG-- 120
R ++ + + + + LTGGEPL Q + + L+ L G+EI++ET+G
Sbjct: 68 RMSLAGILAVCQ------SFPCQRICLTGGEPLAQPNAIALMNLLLAHGYEISLETSGAL 121
Query: 121 -----TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVN-------VSPEN 162
+ +D S + + ++K V + + +
Sbjct: 122 SVAEVPTAVSKVMDIKTPSSQEADKNLWQNIPYLTAHDQIKFVIMNRDDYDWSKQILADY 181
Query: 163 YIGFDFERFSLQPMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
+ PM + T+LA R +Q HK I
Sbjct: 182 QLDKKVATVWFSPMFNVEERQANVPTLATDLAEWILADALPVRFQLQLHKII 233
>gi|304312904|ref|YP_003812502.1| Putative radical activating enzyme [gamma proteobacterium HdN1]
gi|301798637|emb|CBL46869.1| Putative radical activating enzyme [gamma proteobacterium HdN1]
Length = 218
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 43/226 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C++CDT + + G
Sbjct: 8 LRITEIFHSLQGETRTLGLPTVFVRLTGCPL-----------RCQYCDTAYAF---SGGQ 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
+ +++Q+ + + Y +TGGEPL Q + +PL+QAL +G+E+++ET+G +
Sbjct: 54 QMSLEQILETV------AGFRTHYVTVTGGEPLAQPNCIPLLQALCDQGYEVSLETSGAL 107
Query: 123 EPPQGIDWI--CVSPKAGCDLKIKG-----------GQELKLVF---PQVNVSPENYIGF 166
+ + + V K ++ ++K V + + + +
Sbjct: 108 DISEIDARVVRVVDLKTPGSGEMHRNLYENIKYLQPHDQVKFVLCSRQDYDWARAKLLEY 167
Query: 167 DFER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
D P G + T LA R +Q HK +
Sbjct: 168 DLCNRVSDVLFSPSWGQL--DATELAEWILADRLPVRFQMQLHKLL 211
>gi|107100431|ref|ZP_01364349.1| hypothetical protein PaerPA_01001456 [Pseudomonas aeruginosa PACS2]
Length = 215
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 49 GDVVSLDAIFERVAAYKP------RYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 103 ALDVSRIDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 162
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 163 EYRLDQRAGEVLFSPSHHQVSAR--ELADWIVADNLPVRLQLQLHKIL 208
>gi|284048974|ref|YP_003399313.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
gi|283953195|gb|ADB47998.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
Length = 218
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%)
Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
MK + + E+F +++GEG G +AVF RF+GCNL +C +CDT +
Sbjct: 1 MKTETFPVVELFDSIEGEGKRTGAMAVFVRFAGCNL-----------RCSYCDTGYALEP 49
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
+ L I + LTGGEPLLQ L + L++ G+E+ +ET
Sbjct: 50 ADAREHLTEEDLMGRIRR------YPWKKVTLTGGEPLLQPLDSLCRTLSREGYEVNIET 103
Query: 119 NGTIEPPQG------IDWICVSPKAGCDLKIK--------GGQELKLVF-PQVNVSPENY 163
NG + + SP +G +++ G +K V + ++ +
Sbjct: 104 NGAVPLLEERPRGLFYTMDVKSPSSGMRGRMRMENLTRLTGEDVVKFVVGSREDLEDMDR 163
Query: 164 IGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ ++ + + P+ G + + ++ + R+ VQ HK I
Sbjct: 164 VLREYTLRSQVYVSPVYGAIEPR---ELVEFVREHKLAQVRVQVQLHKII 210
>gi|253997441|ref|YP_003049505.1| Radical SAM domain-containing protein [Methylotenera mobilis JLW8]
gi|253984120|gb|ACT48978.1| Radical SAM domain protein [Methylotenera mobilis JLW8]
Length = 212
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 80/227 (35%), Gaps = 42/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE G VF R +GC +C +CDT + G+
Sbjct: 1 MKLKIHEIFYSLQGESSRVGLPTVFVRLTGCP-----------MRCVYCDTAYAFSGGSN 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
++ D+I + E Y +TGGEPL Q D + ++AL +G+ +++ET G
Sbjct: 50 ------MEVEDIITK---VAEYATPYVTVTGGEPLAQKDCHVLLKALCDQGYSVSLETGG 100
Query: 121 TIEPPQGIDWICVSPKA-------------GCDLKIKGGQELKLV------FPQVNVSPE 161
I+ + V G +K E+K V +
Sbjct: 101 AIDIAPVDPRVSVILDVKTPDSGELKNNLWGNLAHLKKADEVKFVLCSRADYEWAKDFLA 160
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ + LA R+ +Q HK +
Sbjct: 161 KEQLTAKCSVLFSPVYSQLAPAD--LADWVLADKLPVRMQLQLHKIL 205
>gi|218893054|ref|YP_002441923.1| putative radical activating enzyme [Pseudomonas aeruginosa LESB58]
gi|218773282|emb|CAW29094.1| probable radical activating enzyme [Pseudomonas aeruginosa LESB58]
Length = 264
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 98 GDVVSLDAIFERVAAYKP------RYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 152 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 211
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 212 EYRLDQRAGEVLFSPSHHQVSAR--ELADWIVADNLPVRLQLQLHKIL 257
>gi|254239323|ref|ZP_04932646.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719]
gi|126171254|gb|EAZ56765.1| hypothetical protein PACG_05520 [Pseudomonas aeruginosa C3719]
Length = 264
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 98 GDVVSLDAIFERVAAYKP------RYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 152 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 211
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 212 EYRLDQRAGEVLFSPSHHQVSAR--ELADWIVADNLPVRLQLQLHKIL 257
>gi|49082982|gb|AAT50891.1| PA0975 [synthetic construct]
Length = 265
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 98 GDVVSLDAIFERVAAYKP------RYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 152 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 211
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 212 EYRLDQRAGEVLFSPSHHQVSAR--ELADWIVADNLPVRLQLQLHKIL 257
>gi|15596172|ref|NP_249666.1| radical activating enzyme [Pseudomonas aeruginosa PAO1]
gi|254245258|ref|ZP_04938580.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192]
gi|9946883|gb|AAG04364.1|AE004531_1 probable radical activating enzyme [Pseudomonas aeruginosa PAO1]
gi|126198636|gb|EAZ62699.1| hypothetical protein PA2G_06150 [Pseudomonas aeruginosa 2192]
Length = 264
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 98 GDVVSLDAIFERVAAYKP------RYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 152 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 211
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 212 EYRLDQRAGEVLFSPSHHQVSAR--ELADWIVADNLPVRLQLQLHKIL 257
>gi|188990578|ref|YP_001902588.1| Putative radical activating enzyme [Xanthomonas campestris pv.
campestris str. B100]
gi|167732338|emb|CAP50530.1| Putative radical activating enzyme [Xanthomonas campestris pv.
campestris]
Length = 227
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 82/226 (36%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + L+ L GF++++ET+G
Sbjct: 63 EWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETSGA 116
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSP------EN 162
++ + +P +G D + + ++K V
Sbjct: 117 LDVSAVDARVSRVVDIKTPASGEDHRNRWDNLPLLTARDQIKFVICSRADYEWSRDVVAT 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G LA P R +Q HK +
Sbjct: 177 QALDRRCTVWFSPSKGQVSAR--ELADWIVADRPPVRFQMQLHKIL 220
>gi|312962750|ref|ZP_07777238.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6]
gi|311282967|gb|EFQ61560.1| queuosine biosynthesis protein QueE [Pseudomonas fluorescens WH6]
Length = 218
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 4 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 52
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++E+ + RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 53 ------TIRTLDDILEQ---VAGYKPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLET 103
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V +
Sbjct: 104 SGALDISAVDSRVSRVVDLKTPDSKEAHRNRYENIELLTPNDQVKFVICSRDDYDWATSK 163
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P LA N RL +Q HK++
Sbjct: 164 LIQYGLERRAGEVLFSPSHHDLNAR--ELADWVVADNLPVRLQLQLHKYL 211
>gi|192361070|ref|YP_001983293.1| radical SAM domain-containing protein [Cellvibrio japonicus
Ueda107]
gi|190687235|gb|ACE84913.1| radical SAM domain protein [Cellvibrio japonicus Ueda107]
Length = 252
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 77/226 (34%), Gaps = 43/226 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CD+++ G
Sbjct: 42 LKITEIFYSLQGEARTVGLPTVFVRLTGCPL-----------RCGYCDSEYAFY---GGE 87
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTI 122
R ++D++ + R+ +TGGEP+ + V L++ L G+ +++ET+G +
Sbjct: 88 RLSLDEILARVAR------YHPRHVCVTGGEPMAQRECVTLLKMLCDAGYGVSLETSGAM 141
Query: 123 EPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFE 169
+ + + ++K V D
Sbjct: 142 PLEDVDPRVSKVMDLKTPGSGEVGRNRWENIPLLGEQDQVKFVICNREDYEWARFKLDEY 201
Query: 170 RF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G LA N R +Q HK +
Sbjct: 202 ELASRAGEVLFSPSHGQVKP--VELAEWILADNLPVRFQLQLHKLL 245
>gi|194366888|ref|YP_002029498.1| Radical SAM domain-containing protein [Stenotrophomonas maltophilia
R551-3]
gi|194349692|gb|ACF52815.1| Radical SAM domain protein [Stenotrophomonas maltophilia R551-3]
Length = 233
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 80/226 (35%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIF +LQGE AG VF R +GC L +C++CDT + GT
Sbjct: 23 RLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGTW- 70
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + Q R+ +TGGEPL Q + +Q L G ++++ET+G
Sbjct: 71 --WDIDDIVAEVLAQ------GVRHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSGA 122
Query: 122 IEPPQGIDWIC--VSPKAGCD-----------LKIKGGQELKLV------FPQVNVSPEN 162
++ + V K + ++K V +
Sbjct: 123 LDVSAVDPRVSRVVDIKTPGSAEAARNRLENLPLLTARDQIKFVICSREDYDWAKAMLAE 182
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G LA R +Q HK +
Sbjct: 183 HDLVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226
>gi|313105862|ref|ZP_07792125.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016]
gi|310878627|gb|EFQ37221.1| putative radical activating enzyme [Pseudomonas aeruginosa 39016]
Length = 215
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 49 GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 103 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 162
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P + LA N RL +Q HK +
Sbjct: 163 EYRLDQRAGEVLFSP--SHYQVSARELADWIVADNLPVRLQLQLHKIL 208
>gi|254523566|ref|ZP_05135621.1| radical activating enzyme [Stenotrophomonas sp. SKA14]
gi|219721157|gb|EED39682.1| radical activating enzyme [Stenotrophomonas sp. SKA14]
Length = 233
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 48/226 (21%), Positives = 78/226 (34%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIF +LQGE AG VF R +GC L +C++CDT + GT
Sbjct: 23 RLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGTW- 70
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + Q R+ +TGGEPL Q + +Q L G ++++ET+G
Sbjct: 71 --WDIDDIVAEVLAQ------GVRHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSGA 122
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLV------FPQVNVSPEN 162
++ + + ++K V +
Sbjct: 123 LDVSAVDPRVSRVVDIKTPGSAEVARNRWENLPLLTARDQIKFVICSREDYDWAKALLAE 182
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G LA R +Q HK +
Sbjct: 183 HELVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226
>gi|74318221|ref|YP_315961.1| radical activating enzyme [Thiobacillus denitrificans ATCC 25259]
gi|74057716|gb|AAZ98156.1| radical activating enzyme; radical SAM family [Thiobacillus
denitrificans ATCC 25259]
Length = 216
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 81/226 (35%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE G VF R +GC L +CR+CDT + G
Sbjct: 6 TLRITEIFLSLQGETSRTGLATVFVRLAGCPL-----------RCRWCDTTYSF---QGG 51
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
++D++ + +TGGEPL Q + +PL+ L G+ +++ET+G
Sbjct: 52 ETVSLDEVLARV------AGFGVSVVCVTGGEPLAQKNCLPLLARLCDAGYSVSLETSGA 105
Query: 122 IE----PPQGIDWICVSPKAGCDLKIKG---------GQELKLVFPQVNVSPENYIGFDF 168
++ P+ + V P ++ E+K V
Sbjct: 106 LDVSAVDPRVSRIVDVKPPESGEVARNRWENLAHLGAHDEIKFVLADRADYEWAREVLRE 165
Query: 169 ------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA R+ VQ HK +
Sbjct: 166 RALERVCPVLFSPVQGELAPA--QLAEWILADRLPVRMQVQLHKLL 209
>gi|297539673|ref|YP_003675442.1| Radical SAM domain-containing protein [Methylotenera sp. 301]
gi|297259020|gb|ADI30865.1| Radical SAM domain protein [Methylotenera sp. 301]
Length = 212
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 42/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF ++QGE G VF R +GC +C +CDT + G+
Sbjct: 1 MKLKVHEIFYSIQGESSRVGLPTVFVRLTGCP-----------MRCVYCDTAYAFSGGSN 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
++ + E +Y +TGGEPL Q D ++ L G+ +++ET G
Sbjct: 50 ---------IEIADILAKVAEFGTKYVTVTGGEPLAQKDCHFLLKDLCDAGYSVSLETGG 100
Query: 121 TIEPPQGIDWICVSPKA-------------GCDLKIKGGQELKLV------FPQVNVSPE 161
I+ + V +K E+K V +
Sbjct: 101 AIDISPVDKRVSVILDVKTPDSGELKNNVWSNLDHLKSSDEVKFVLCSREDYQWARDLLS 160
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + P+ T+LA R+ VQ HK +
Sbjct: 161 THKIAEKCPVLFSPVYSQVSP--TDLAEWVLADKLPVRMQVQLHKIL 205
>gi|292572231|gb|ADE30146.1| Organic radical activating enzyme [Rickettsia prowazekii Rp22]
Length = 225
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 96/226 (42%), Gaps = 34/226 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ IF T+QGEG G ++F R GCNL C FCDT+F
Sbjct: 16 TKLEVQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----ED 59
Query: 62 GGRYNVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++DQ+ + ++ + + K V+TGGEP+ Q L Q L + F++ +ETN
Sbjct: 60 FKLIDIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETN 119
Query: 120 GT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGFD 167
GT +I SPK G K ++L V + PE
Sbjct: 120 GTLYRSLPKEVFIVCSPKVGKTGYNKIREDLLPQISAVKFIISKNIVEYSIIPEVGQSAY 179
Query: 168 FERFSLQPMDGPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+Q MD EN LA+ ++ RLS+QTHKF+GI
Sbjct: 180 DIPVFVQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGI 224
>gi|54297969|ref|YP_124338.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris]
gi|53751754|emb|CAH13176.1| hypothetical protein lpp2024 [Legionella pneumophila str. Paris]
Length = 217
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 46/232 (19%)
Query: 1 MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
MK I EIF +LQGE G VF R +GC L +C++CDT +
Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA 115
+ G +D + + + + ++ +TGGEPL Q VPL+ L G+ ++
Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCVPLLSKLCDAGYSVS 100
Query: 116 VETNGTIEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPE- 161
+ET+G + + + +K ++K V N
Sbjct: 101 LETSGARDIASVDQRVMIVMDLKTPDSKEADKNLLSNLNFLKPTDQIKFVLCSRNDYEWA 160
Query: 162 -----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
Y + + P T+LA R +Q HK +
Sbjct: 161 CSMLSEYQLAERVQLLFSPSWNQLNP--TDLANWIIQDKLPVRFQLQLHKIL 210
>gi|15604457|ref|NP_220975.1| hypothetical protein RP607 [Rickettsia prowazekii str. Madrid E]
gi|3861151|emb|CAA15051.1| unknown [Rickettsia prowazekii]
Length = 234
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 96/226 (42%), Gaps = 34/226 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ IF T+QGEG G ++F R GCNL C FCDT+F
Sbjct: 25 TKLEVQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----ED 68
Query: 62 GGRYNVDQLADLIEEQWITGE--KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++DQ+ + ++ + + K V+TGGEP+ Q L Q L + F++ +ETN
Sbjct: 69 FKLIDIDQILNKVKNLSLNSKNAKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETN 128
Query: 120 GT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGFD 167
GT +I SPK G K ++L V + PE
Sbjct: 129 GTLYRSLPKEVFIVCSPKVGKTGYNKIREDLLPQISAVKFIISKNIVEYSIIPEVGQSAY 188
Query: 168 FERFSLQPMDGPF---LEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+Q MD EN LA+ ++ RLS+QTHKF+GI
Sbjct: 189 DIPVFVQSMDQNDKRLNNENNELAVKLALES-GARLSLQTHKFLGI 233
>gi|323474845|gb|ADX85451.1| organic radical activating enzyme, NrdG [Sulfolobus islandicus
REY15A]
Length = 208
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 40/229 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + EIF ++QGEG G + F R + CNL +C +CDT +
Sbjct: 1 MKYRVIEIFTSVQGEGEVIGTPSNFIRLATCNL-----------RCVWCDTKYSW---EI 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G +D++ I+++ R +TGGEPLLQ VPL + L G +I +ETNGT
Sbjct: 47 GTEMTIDEIIAKIDKKI-------RTTTITGGEPLLQNVVPLAKELKSIGHKIVIETNGT 99
Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF---- 166
I+P + ID VSPK +G LK + K V N + I F
Sbjct: 100 IKPSEELRKIIDVFSVSPKLSNSGHKLKYDFSDDWATYYKFVIVYPNKDIDEVIKFVESQ 159
Query: 167 --DFERFSLQP-MDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
+ + LQP + N + +R+ Q H+ IG+R
Sbjct: 160 NINPRKVILQPDGNRSDYINAINEIVQIVLDRGLLFRVLPQLHRIIGVR 208
>gi|116048900|ref|YP_792299.1| radical activating enzyme [Pseudomonas aeruginosa UCBPP-PA14]
gi|115584121|gb|ABJ10136.1| probable radical activating enzyme [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 264
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 52 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 97
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 98 GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 151
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 152 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 211
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 212 EYRLDQRAGEVLFSPSHHQVSAR--ELADWIVADNLPVRLQLQLHKIL 257
>gi|296390666|ref|ZP_06880141.1| radical activating enzyme [Pseudomonas aeruginosa PAb1]
Length = 215
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE AG VF R +GC L +C +CDT + +
Sbjct: 3 QTLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCHYCDTAYAF---SG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G ++D + + + + RY +TGGEPL Q + + L++ L G+E+++ET+G
Sbjct: 49 GDVVSLDAILERV------ATYKPRYICVTGGEPLAQPNCISLLERLCDAGYEVSLETSG 102
Query: 121 TIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGFD 167
++ + + +P +G + + ++K V
Sbjct: 103 ALDVSRVDPRVSKVLDLKTPGSGEVGRNRYENIPLLTDNDQVKFVVCSREDYDWAVSKLI 162
Query: 168 FERF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P LA N RL +Q HK +
Sbjct: 163 EYRLDQRAGEVLFSPSHHQVSAR--ELADWIVADNLPVRLQLQLHKIL 208
>gi|220935394|ref|YP_002514293.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7]
gi|219996704|gb|ACL73306.1| putative radical activating enzyme [Thioalkalivibrio sp. HL-EbGR7]
Length = 227
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/226 (19%), Positives = 77/226 (34%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE G VF R +GC L +C +CDT++ G
Sbjct: 17 RLRITEIFLSLQGESRSVGWPTVFVRLTGCPL-----------RCGYCDTEYAFT---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGT 121
+++ + + + +TGGEPL + + L+ L G+E+++ET+G
Sbjct: 63 EWMSLEAVLAQV------ASHGVHHVTVTGGEPLAQRACLELLTRLCDAGYEVSLETSGA 116
Query: 122 IEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ + + + + ++K V
Sbjct: 117 LDVAAVDPRVVKVMDLKTPASGEAGRNRYENLGYLSLKDQVKFVICDRADYEWARQTVAT 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G + LA R +Q HK +
Sbjct: 177 HDLTARCEVLFSPSYGQLAPRD--LADWIVADRLPVRFQLQLHKIL 220
>gi|15892856|ref|NP_360570.1| hypothetical protein RC0933 [Rickettsia conorii str. Malish 7]
gi|34581434|ref|ZP_00142914.1| hypothetical protein [Rickettsia sibirica 246]
gi|157828787|ref|YP_001495029.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933515|ref|YP_001650304.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa]
gi|229586950|ref|YP_002845451.1| Organic radical activating enzyme [Rickettsia africae ESF-5]
gi|15620043|gb|AAL03471.1| unknown [Rickettsia conorii str. Malish 7]
gi|28262819|gb|EAA26323.1| unknown [Rickettsia sibirica 246]
gi|157801268|gb|ABV76521.1| hypothetical protein A1G_05140 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908602|gb|ABY72898.1| queuosine biosynthesis protein [Rickettsia rickettsii str. Iowa]
gi|228022000|gb|ACP53708.1| Organic radical activating enzyme [Rickettsia africae ESF-5]
Length = 225
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 36/225 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++ IF T+QGEG G A+F R GCNL C FCDT+F
Sbjct: 18 LEVQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEF-----EDFD 61
Query: 64 RYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG- 120
++D++ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNG
Sbjct: 62 LVDIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGT 121
Query: 121 -TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGFDF 168
P+ + IC SPK G K ++L V + PE
Sbjct: 122 LYRSLPKEVSIIC-SPKVGKTGYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYN 180
Query: 169 ERFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+QPMD EN LA+ ++ RLS+QTHKF+ I
Sbjct: 181 IPVFIQPMDQNNQRLNGENNELAVKLALES-GARLSLQTHKFLNI 224
>gi|254787332|ref|YP_003074761.1| radical SAM domain-containing protein [Teredinibacter turnerae
T7901]
gi|237685298|gb|ACR12562.1| radical SAM domain protein [Teredinibacter turnerae T7901]
Length = 214
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 81/227 (35%), Gaps = 43/227 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M I EIF +LQGE G VF R +GC L +C++CD+++
Sbjct: 1 MTDLRITEIFHSLQGEARTVGVPTVFVRLTGCPL-----------RCQYCDSEYAFF--- 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
G + ++D++ L+ + +TGGEPL Q + +PL++ L G +++ET+
Sbjct: 47 GGEKKSLDEIEALVI------GFRCSHVCVTGGEPLAQPNCIPLLERLCDAGLAVSLETS 100
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGG-------------QELKLVFPQVNVSPENYIGF 166
G ++ + + + ++K V +
Sbjct: 101 GAMDISAVDTRVSIVLDLKTPDSGERDKNLLSNIPLLAAKDQIKFVICSRSDYEWARFML 160
Query: 167 DFER-------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
D ++ P LA R +Q HK
Sbjct: 161 DEQQLVGRVGDIFFSPSYTQLAPA--ELAQWILDDRLPVRFQMQLHK 205
>gi|148652703|ref|YP_001279796.1| radical SAM domain-containing protein [Psychrobacter sp. PRwf-1]
gi|148571787|gb|ABQ93846.1| Radical SAM domain protein [Psychrobacter sp. PRwf-1]
Length = 245
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 80/238 (33%), Gaps = 53/238 (22%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE AG VF R +GC L +C +CDT + G
Sbjct: 21 LRMTEIFYSLQGEALTAGLPTVFVRLTGCPL-----------RCVYCDTTYSFT---GGE 66
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG-- 120
R +++ + I + + LTGGEPL Q + +PL+Q L G+EI++ET G
Sbjct: 67 RLSLEAIMADIAQ------YPCKRICLTGGEPLAQPNAIPLMQRLLDEGYEISLETAGAL 120
Query: 121 -----TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFE 169
+ +D S +LK V + +
Sbjct: 121 SVADVPAAVSKVMDIKTPSSGESDKNLWSNLEYLTQHDQLKFVIMNRSDYDWSKQKLAEY 180
Query: 170 RF-------SLQPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQTHKFI 208
PM + LA RL +Q HK I
Sbjct: 181 NLDKVVGTVWFSPMFNVHDDAQGDVAAVDVPNLARELAEWILADALPVRLQLQLHKII 238
>gi|190575559|ref|YP_001973404.1| putative radical SAM-superfamily protein [Stenotrophomonas
maltophilia K279a]
gi|190013481|emb|CAQ47116.1| putative radical SAM-superfamily protein [Stenotrophomonas
maltophilia K279a]
Length = 233
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/226 (21%), Positives = 78/226 (34%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIF +LQGE AG VF R +GC L +C++CDT + GT
Sbjct: 23 RLKITEIFTSLQGEADTAGWPTVFVRLTGCPL-----------RCQYCDTAYAFHGGTW- 70
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + Q R+ +TGGEPL Q + +Q L G ++++ET+G
Sbjct: 71 --WDIDDIVAEVLAQ------GVRHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSGA 122
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLV------FPQVNVSPEN 162
++ + + ++K V +
Sbjct: 123 LDVSAVDPRVSRVVDIKTPGSAEAARNRWENLPLLTARDQIKFVICSRGDYDWAKALVAE 182
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G LA R +Q HK +
Sbjct: 183 HELVKRCTVFFSPSKGEITAR--QLADWIVEDRLPVRFQMQLHKIL 226
>gi|118594347|ref|ZP_01551694.1| Radical SAM [Methylophilales bacterium HTCC2181]
gi|118440125|gb|EAV46752.1| Radical SAM [Methylophilales bacterium HTCC2181]
Length = 216
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/226 (21%), Positives = 80/226 (35%), Gaps = 42/226 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF +LQGE G +F R +GC +C +CDT + +G
Sbjct: 5 QTLKINEIFYSLQGESSRIGLPTIFIRLTGCP-----------MRCNYCDTAYAFHEGKN 53
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
++D + + I++ + + +TGGEPL + L+ L G+ +++ET G
Sbjct: 54 ---LSIDAIIEEIKQ------YDTNFITVTGGEPLAQRNCYSLLDQLCSLGYNVSLETGG 104
Query: 121 TIEPPQGI-------DWICVSPKAGCDLKI------KGGQELKLVFPQVNVSPENYIGFD 167
+ + D + K E+K+V +
Sbjct: 105 ALSINEVHENVKIILDIKTPGSGESENNHWDNLPLIKQKDEIKMVITNQEDYEWSKNIIQ 164
Query: 168 FERFSL------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
+ L P G LA N K R+ VQ HK
Sbjct: 165 EKGLYLNYDILFSPSFGQLEPS--QLADWILQDNLKVRMQVQLHKI 208
>gi|51473785|ref|YP_067542.1| hypothetical protein RT0595 [Rickettsia typhi str. Wilmington]
gi|51460097|gb|AAU04060.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
Length = 231
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 94/226 (41%), Gaps = 34/226 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
++ IF T+QGEG G ++F R GCNL C FCDT+F
Sbjct: 22 TKLEVQSIFKTIQGEGIFVGYPSIFIRLGGCNL-----------ACNFCDTEF-----ED 65
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++DQ+ + ++ + + V+TGGEP+ Q L Q L + F++ +ETN
Sbjct: 66 FELIDIDQIINKVQNLSLNSKNSKTINLVVITGGEPMRQPIGLLCQKLLDQDFKVQIETN 125
Query: 120 GT-IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGFD 167
GT +I SPK G K ++L V + PE
Sbjct: 126 GTLYRSLPKGVFIVCSPKVGKTGYNKIREDLLPQVCAVKFIISKNIIEYSIIPEVGQSAY 185
Query: 168 FERFSLQPMDG---PFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+Q MD EN LA+ ++ RLS+Q HKF+GI
Sbjct: 186 NIPVFVQSMDQNDKKLNAENNELAVKLALES-GARLSLQIHKFLGI 230
>gi|227498703|ref|ZP_03928847.1| radical SAM family protein [Acidaminococcus sp. D21]
gi|226904159|gb|EEH90077.1| radical SAM family protein [Acidaminococcus sp. D21]
Length = 222
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 81/230 (35%), Gaps = 42/230 (18%)
Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
MK + + EIF ++ GEG G +A F RF+GCNL +C +CDT +
Sbjct: 5 MKTERFPVVEIFDSIDGEGKRTGYMATFVRFAGCNL-----------RCSYCDTAYAWDA 53
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
+ D L I + LTGGEP+LQ L + L G+E+ +ET
Sbjct: 54 SQAKEWLSEDNLFQQITA------YPWKRVTLTGGEPMLQPIETLCRRLGDAGYEVNIET 107
Query: 119 NG--------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYI 164
NG +D S ++ + LK V V
Sbjct: 108 NGAAALFLERPDRLFYTMDIKSPSSGEKDRMRWENLSLLTADDVLKFVVGSVEDLRYMET 167
Query: 165 GFD----FERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ + P+ G + + + + + VQ HK I
Sbjct: 168 ILSTYSIKAQIYVSPVFGKIEPVAL---VDFVKHHQLSRVCVQVQLHKVI 214
>gi|213586502|ref|ZP_03368328.1| hypothetical protein SentesTyph_36610 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 170
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 70/180 (38%), Gaps = 40/180 (22%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQV 156
L K GF +ET+GT E W+ VSPK ++ E+K +V
Sbjct: 106 DLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRV 165
>gi|313202056|ref|YP_004040714.1| radical sam domain-containing protein [Methylovorus sp. MP688]
gi|312441372|gb|ADQ85478.1| Radical SAM domain protein [Methylovorus sp. MP688]
Length = 212
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 75/227 (33%), Gaps = 42/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE G VF R +GC +C +CDT +
Sbjct: 1 MKLRIHEIFHSLQGESSRVGLPTVFVRLTGCP-----------MRCVYCDTAYAFH---G 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
GG +D + + E Y +TGGEPL + L+ L G+ +++ET G
Sbjct: 47 GGSMEIDDIMQKVAE------YGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETGG 100
Query: 121 TIEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
++ + V G +K E+K V D
Sbjct: 101 AMDIANVDPRVSVILDIKTPGSGELEKNLWGNLAHLKAQDEVKFVLCDHADYLWAKELLD 160
Query: 168 FERF------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ T LA R+ VQ HK +
Sbjct: 161 KQPLHRTCSVLFSPVYSQVNP--TELAEWILADKLPVRMQVQLHKIL 205
>gi|330811384|ref|YP_004355846.1| Putative radical SAM-superfamily protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379492|gb|AEA70842.1| Putative radical SAM-superfamily protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 215
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++E+ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TLRTLDDILEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEAHRNRYENIELLTPNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
L P + LA N RL +Q HK++
Sbjct: 161 LIQYGLDQRAGEVLLSPSHHDLSARD--LADWVVADNLPVRLQLQLHKYL 208
>gi|255020132|ref|ZP_05292202.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus
ATCC 51756]
gi|254970425|gb|EET27917.1| Queuosine Biosynthesis QueE Radical SAM [Acidithiobacillus caldus
ATCC 51756]
Length = 213
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/228 (24%), Positives = 83/228 (36%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + EIF +LQGE +G A F R +GC L +C +CDT +
Sbjct: 1 MSRLRVSEIFHSLQGETTASGVPATFVRLTGCPL-----------RCSYCDTAYAFH--- 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
G + DQ+ + E+ + R V+TGGEPL Q L+ AL G E+ +ET+
Sbjct: 47 GGEWLDADQILARVAER------DNRLVVITGGEPLAQPAVHALMTALCDGGREVYLETS 100
Query: 120 GTIEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSPENYIGF 166
G + + + SP +G + ++K V +
Sbjct: 101 GALSVAEVDPRVVKILDLKSPGSGELERNLWENLDYLGSRDQVKFVLCNRDDYEWARTTV 160
Query: 167 DF------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G + LA RL +Q HKFI
Sbjct: 161 RERKLQGRCELLFSPAYGQLTARD--LAEWILEDRLPVRLQIQLHKFI 206
>gi|148359615|ref|YP_001250822.1| radical activating enzyme [Legionella pneumophila str. Corby]
gi|296107657|ref|YP_003619358.1| Organic radical activating enzyme [Legionella pneumophila 2300/99
Alcoy]
gi|148281388|gb|ABQ55476.1| radical activating enzyme [Legionella pneumophila str. Corby]
gi|295649559|gb|ADG25406.1| Organic radical activating enzyme [Legionella pneumophila 2300/99
Alcoy]
Length = 217
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 46/232 (19%)
Query: 1 MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
MK I EIF +LQGE G VF R +GC L +C++CDT +
Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA 115
+ G +D + + + + ++ +TGGEPL Q +PL+ L G+ ++
Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100
Query: 116 VETNGTIEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPE- 161
+ET+G + + + +K ++K V N
Sbjct: 101 LETSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRNDYEWA 160
Query: 162 -----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
Y + + P + LA R +Q HK +
Sbjct: 161 CSMLSEYQLAERVQLLFSPSWNQLNPAD--LANWIIQDKLPVRFQLQLHKIL 210
>gi|269467818|gb|EEZ79570.1| organic radical activating enzyme [uncultured SUP05 cluster
bacterium]
Length = 211
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 42/227 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M +I EIF +LQGE G VF R +GC L +C +CDT++
Sbjct: 1 MVNLNINEIFYSLQGEAREVGLPTVFVRLTGCPL-----------RCTYCDTEYAF---K 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
++ ++ ++ + + +Y +TGGEPL Q++ + + AL K G+++++ET+
Sbjct: 47 GNNTLSISKILTEVK------KYKTQYVCITGGEPLAQINCHVLLDALVKEGYQVSLETS 100
Query: 120 GTIEPPQ-------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF---- 168
G+I+ +D S K +LK V Q+ + FD+
Sbjct: 101 GSIDVSAVNSGVSIVMDVKTPSSNESKHNKYDNIDKLK-VKDQLKFVIGSKEDFDWSVDV 159
Query: 169 -------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ LA + R+ VQ HK +
Sbjct: 160 LGRYPTMAQVLFSPVFEAIKPA--QLADWILEKQLNVRMQVQLHKLL 204
>gi|330502228|ref|YP_004379097.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01]
gi|328916514|gb|AEB57345.1| radical SAM domain-containing protein [Pseudomonas mendocina NK-01]
Length = 226
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CDT +
Sbjct: 12 MQETLRITEIFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDTAYAF--- 57
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G +D++ D + Y +TGGEPL Q + + L+ L G+E+++ET
Sbjct: 58 SGGEIVTLDRILDQVAA------YRPHYVCVTGGEPLAQPNCISLLTRLCDAGYEVSLET 111
Query: 119 NGTIEPPQGIDWICVSPK---AGCDLKIKGGQE----------LKLVFPQVNVSP----- 160
+G ++ + G + E +K V
Sbjct: 112 SGALDVAAVDPRVSKVLDLKTPGSAEVQRNRYENIQWLTRNDQVKFVICSREDYDWAISK 171
Query: 161 --ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E+ + P E LA N RL +Q HK +
Sbjct: 172 LIEHDLAARAGEVLFSPSHTQV--EARALAEWIIADNLPVRLQLQLHKIL 219
>gi|113474000|ref|YP_720061.1| hypothetical protein Tery_0080 [Trichodesmium erythraeum IMS101]
gi|110165048|gb|ABG49588.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 207
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 33/220 (15%)
Query: 5 SIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E F T+QGEG AG F R +GC + C +CDT + G
Sbjct: 8 PIHETFQKTIQGEGYWAGTPVDFIRLAGCPV-----------GCHYCDTGYA--DGGISL 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT- 121
+ L LI E + V++GGEP + +P LI + G ++++ET+G
Sbjct: 55 PRQIQTLDKLINELF------SPRVVISGGEPFIHKQLPALINRIEATGRQVSIETSGCY 108
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF----------ERF 171
+ W+ +SPK K + ++ + E +F
Sbjct: 109 WQNISPNAWVTLSPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKILLLKNQTPV 168
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP + + L + P RLS+Q HK++GI+
Sbjct: 169 FLQP-EWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK 207
>gi|238650659|ref|YP_002916511.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic]
gi|238624757|gb|ACR47463.1| queuosine biosynthesis protein [Rickettsia peacockii str. Rustic]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/225 (30%), Positives = 97/225 (43%), Gaps = 36/225 (16%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++ IF T+QGEG G A+F R GCNL C FCDT+F
Sbjct: 18 LEVQSIFKTIQGEGIFVGCPAIFIRLGGCNL-----------ACNFCDTEFEAFD----- 61
Query: 64 RYNVDQLADLIEEQWIT--GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG- 120
++D++ + +E + EK V+TGGEP+ Q L Q L R ++ +ETNG
Sbjct: 62 LVDIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGT 121
Query: 121 -TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGFDF 168
P+ + IC SPK G K ++L V + PE
Sbjct: 122 LYRSLPKEVSIIC-SPKVGKTSYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYN 180
Query: 169 ERFSLQPMDGPFLE---ENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+QPMD EN LA+ ++ RLS+QTHKF+ I
Sbjct: 181 IPVFIQPMDQNNQRLNGENNELAVKLALES-GTRLSLQTHKFLNI 224
>gi|21232445|ref|NP_638362.1| radical activating enzyme [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767472|ref|YP_242234.1| radical activating enzyme [Xanthomonas campestris pv. campestris
str. 8004]
gi|21114226|gb|AAM42286.1| radical activating enzyme [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66572804|gb|AAY48214.1| radical activating enzyme [Xanthomonas campestris pv. campestris
str. 8004]
Length = 227
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCTYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + L+ L GF++++ET+G
Sbjct: 63 EWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLALLHKLCDAGFDVSLETSGA 116
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSP------EN 162
++ + +P +G D + + ++K V
Sbjct: 117 LDVSAVDARVSRVVDIKTPASGEDHRNRWDNLPLLTARDQIKFVICSRADYEWSRDVVAT 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G LA R +Q HK +
Sbjct: 177 QALDRRCTVWFSPSKGQVSAR--ELADWIVADRLPVRFQMQLHKIL 220
>gi|307610772|emb|CBX00384.1| hypothetical protein LPW_21051 [Legionella pneumophila 130b]
Length = 217
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 46/232 (19%)
Query: 1 MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
MK I EIF +LQGE G VF R +GC L +C++CDT +
Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA 115
+ G +D + + + + ++ +TGGEPL Q +PL+ L G+ ++
Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100
Query: 116 VETNGTIEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPE- 161
+ET+G + + + +K ++K V
Sbjct: 101 LETSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWA 160
Query: 162 -----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
Y + + P T+LA R +Q HK +
Sbjct: 161 CSMLSEYQLAERVQLLFSPSWNQLNP--TDLANWIIQDKLPVRFQLQLHKIL 210
>gi|88810549|ref|ZP_01125806.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231]
gi|88792179|gb|EAR23289.1| Radical SAM domain protein [Nitrococcus mobilis Nb-231]
Length = 225
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE G G VF R +GC L +C +CDT + G
Sbjct: 16 LRVTEIFYSLQGEAGTVGAPTVFVRLTGCPL-----------RCHYCDTAYAFH---GGE 61
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTI 122
+ ++ ++ D + GE ++ +TGGEPL + + L+ +L RG+ +++ET+G +
Sbjct: 62 KMSIIRILDRV------GEHAAKFVTVTGGEPLAQRGCLTLLSSLCDRGYRVSLETSGAL 115
Query: 123 EPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFE 169
+ + + + ELK V
Sbjct: 116 DVQAVDPRVIKVMDLKTPGSGEERRNRWENLNYLRPHDELKFVICNRQDYDWARTKVSEL 175
Query: 170 RF------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ G LA + RL +Q HK++
Sbjct: 176 KLGERWTVFFSASYGELSSRL--LADWILADHLNVRLQIQLHKYL 218
>gi|119493534|ref|ZP_01624200.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106]
gi|119452651|gb|EAW33832.1| hypothetical protein L8106_18202 [Lyngbya sp. PCC 8106]
Length = 204
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 33/223 (14%)
Query: 1 MKLYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M +I E F T+QGEG AG F R +GC + C +CDT + G
Sbjct: 1 MNEIAIHETFQNTIQGEGFWAGTPVDFIRLAGCPVQ-----------CHYCDTGYAN--G 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVET 118
+G NV LI E V++GGEP + +P L++ + + +ET
Sbjct: 48 GEGLPRNVRSFEALIAELRSPK------VVISGGEPFIYPQLPDLVKCIEATNRTVFIET 101
Query: 119 NGTIEPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------- 169
+G P WI +SPK + ++ ++ + E +
Sbjct: 102 SGCFWQPISSSVWITLSPKEHLNPHYPVVDQMWERASEIKLVIETGSELKYYDQYLSLKP 161
Query: 170 --RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
LQP + + L + Q P +RLS+Q HK++G+
Sbjct: 162 QIPVFLQP-EWTQRDYTLPLVLELLQQYPDYRLSLQLHKYVGV 203
>gi|77460620|ref|YP_350127.1| radical SAM family protein [Pseudomonas fluorescens Pf0-1]
gi|77384623|gb|ABA76136.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
Pf0-1]
Length = 215
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++E+ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIRTLDDILEQ---VAGFRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + LA N RL +Q HK++
Sbjct: 161 LIQYGLERRAGEVLFSPSHHDLNARD--LADWVVADNLPVRLQLQLHKYL 208
>gi|254000097|ref|YP_003052160.1| Radical SAM domain-containing protein [Methylovorus sp. SIP3-4]
gi|253986776|gb|ACT51633.1| Radical SAM domain protein [Methylovorus sp. SIP3-4]
Length = 212
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/227 (22%), Positives = 74/227 (32%), Gaps = 42/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE G VF R +GC +C +CDT +
Sbjct: 1 MKLRIHEIFHSLQGESSRVGLPTVFVRLTGCP-----------MRCVYCDTAYAFH---G 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
G +D + + E Y +TGGEPL + L+ L G+ +++ET G
Sbjct: 47 GSSMEIDDIMQKVAE------YGAHYVTVTGGEPLAQRDCHVLLTRLCDAGYSVSLETGG 100
Query: 121 TIEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
++ + V G +K E+K V D
Sbjct: 101 AMDIANVDPRVSVILDIKTPGSGELEKNLWGNLAHLKAQDEVKFVLCDHADYLWAKELLD 160
Query: 168 FERF------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ T LA R+ VQ HK +
Sbjct: 161 KQPLHRTCSVLFSPVYSQVNP--TELAEWILADKLPVRMQVQLHKIL 205
>gi|229592292|ref|YP_002874411.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
SBW25]
gi|229364158|emb|CAY51804.1| putative radical SAM-superfamily protein [Pseudomonas fluorescens
SBW25]
Length = 215
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
V L D++E+ + RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TVRTLDDILEQ---VAGYKPRYVCVTGGEPLAQPNAIPLLKQLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEAHRNRYENIELLTANDQVKFVICSREDYDWANSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + LA N RL +Q HK++
Sbjct: 161 LIQYGLDRRAGEVLFSPSHHDLNARD--LADWVVADNLPVRLQLQLHKYL 208
>gi|90417119|ref|ZP_01225047.1| radical activating enzyme family protein [marine gamma
proteobacterium HTCC2207]
gi|90331135|gb|EAS46391.1| radical activating enzyme family protein [marine gamma
proteobacterium HTCC2207]
Length = 216
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 43/228 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE G VF R +GC L +C +CDT +
Sbjct: 4 TELRITEIFHSLQGETSTVGLPTVFVRLTGCPL-----------RCGYCDTAYAF---EG 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
G ++ + + + + +Y +TGGEPL + L++ L G+ +++ET+G
Sbjct: 50 GSKWTLSDILSTV------ADYGAKYVTVTGGEPLAQPQCIELLKQLCDLGYRVSLETSG 103
Query: 121 TIE----PPQGIDWICVSPKAGCD---------LKIKGGQELKLVFPQVNVSPENYIGFD 167
+ P+ + + + + E+K V + + D
Sbjct: 104 AMPVEDVDPRVFKIVDLKTPGSGEVSKNLYSNIEYLLPHDEVKFVICDRQDYDWSCMKID 163
Query: 168 F-------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G LA R+ +QTHK+I
Sbjct: 164 ELGLQGRVAEILFSPSQGVLPPA--ELAKWMLHDKLNLRMQIQTHKYI 209
>gi|284174859|ref|ZP_06388828.1| hypothetical protein Ssol98_09426 [Sulfolobus solfataricus 98/2]
gi|261602301|gb|ACX91904.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
Length = 208
Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + EIF ++QGEG G + F R + CNL +C +CDT +
Sbjct: 1 MKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSW---EI 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G ++D++ ++++ T +TGGEPLLQ +PL + L G +I VETNGT
Sbjct: 47 GTEMSIDEIIAKLDKKIKT-------TTITGGEPLLQNILPLAKELKSIGHKIVVETNGT 99
Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF---- 166
I+P + ID VSPK +G LK + K V N + + F
Sbjct: 100 IKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVESQ 159
Query: 167 --DFERFSLQP-MDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
+ + LQP + N + ++R+ Q H+ IG R
Sbjct: 160 SINPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR 208
>gi|289548016|ref|YP_003473004.1| radical SAM protein [Thermocrinis albus DSM 14484]
gi|289181633|gb|ADC88877.1| Radical SAM domain protein [Thermocrinis albus DSM 14484]
Length = 219
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 91/228 (39%), Gaps = 36/228 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EI+ +LQGEG G +VF R GCNL +C +CD G
Sbjct: 10 TALKVSEIYPSLQGEGLLVGTPSVFVRLQGCNL-----------RCPWCDQPESLHPG-G 57
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
G +V+ + E R+ V+TGGEP L++ L K GF + +ETNG
Sbjct: 58 GALMSVEDV------IGKVREYPHRHVVITGGEPFTQSFLTLLVEELLKEGFSVQIETNG 111
Query: 121 TIEPPQ-----GIDWICVSPKAGCDLKIKGG-----QELKLVFP-----QVNVSPENYIG 165
T+ I +SPK + +ELK V + + P
Sbjct: 112 TLWQKGMDTLASHIHITLSPKGVASWFVHPKVLLYARELKWVVDHLLTLDIILMPSFRRF 171
Query: 166 FDFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ ER LQP FL++ +L + R+ Q HK +G++
Sbjct: 172 LEEERVVLQPEGNKEIFLQKALSLQEELLSLGYRVRVLPQLHKLLGLK 219
>gi|15897539|ref|NP_342144.1| hypothetical protein SSO0624 [Sulfolobus solfataricus P2]
gi|13813792|gb|AAK40934.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
Length = 211
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + EIF ++QGEG G + F R + CNL +C +CDT +
Sbjct: 4 MKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNL-----------RCVWCDTKYSW---EI 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G ++D++ ++++ T +TGGEPLLQ +PL + L G +I VETNGT
Sbjct: 50 GTEMSIDEIIAKLDKKIKT-------TTITGGEPLLQNILPLAKELKSIGHKIVVETNGT 102
Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF---- 166
I+P + ID VSPK +G LK + K V N + + F
Sbjct: 103 IKPSEELRKIIDIFSVSPKLSNSGHKLKYDFADDWATYYKFVIVYPNKDIDEVVKFVESQ 162
Query: 167 --DFERFSLQP-MDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFIGIR 211
+ + LQP + N + ++R+ Q H+ IG R
Sbjct: 163 SINPRKVILQPDGNRSDYINAINEIVQIVLDRGLQFRVLPQLHRIIGAR 211
>gi|302035630|ref|YP_003795952.1| putative radical-activating enzyme, radical SAM superfamily
[Candidatus Nitrospira defluvii]
gi|300603694|emb|CBK40025.1| putative Radical-activating enzyme, radical SAM superfamily
[Candidatus Nitrospira defluvii]
Length = 212
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 84/226 (37%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF ++QGE +AGR VF R +GC L +C +CDT + G
Sbjct: 1 MVKVTEIFHSIQGESTYAGRPCVFVRLTGCPL-----------RCTWCDTAYAFY---GG 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
+D + + + +TGGEPL Q +PL+ L GFE+ VET+G
Sbjct: 47 RDLTIDDIVNQV------RAFSCDLVEVTGGEPLSQPASLPLLTRLCDEGFEVLVETSGA 100
Query: 122 IEPPQGIDWICV-----SPKAGCDLKIKG--------GQELKLV------FPQVNVSPEN 162
IE + V P +G ++ E+K V +
Sbjct: 101 IETIGVDRRVHVILDVKCPGSGMTDRMCWSNLDRLAPQDEVKFVIKDRVDYEWAREVLHR 160
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + P+ G LA R +Q HKFI
Sbjct: 161 HELPGRCTVLMSPVFGEVEVRY--LAEWILADKLPVRFQLQMHKFI 204
>gi|56476931|ref|YP_158520.1| radical activating enzyme [Aromatoleum aromaticum EbN1]
gi|56312974|emb|CAI07619.1| SAM radical family enzyme similar to queE gene product; involved in
queuosine biosynthesis [Aromatoleum aromaticum EbN1]
Length = 221
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 50/224 (22%), Positives = 82/224 (36%), Gaps = 42/224 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF +LQGE G VF R +GC L +C +CDT++ G
Sbjct: 13 RLTEIFASLQGESTRVGLPTVFVRLTGCPL-----------RCVWCDTEYAFQGGE---- 57
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+A ++EE + +TGGEPL Q + L+ AL G +++ET+G ++
Sbjct: 58 --SRSIASIVEEVL---GHGIEHVCVTGGEPLAQKSCLALLAALCDAGLSVSLETSGALD 112
Query: 124 PPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLV------FPQVNVSPENYI 164
+ +P +G + + E+K+V + +
Sbjct: 113 IAAVDPRVSRVMDLKAPGSGEVARNRWDNLARLNERDEVKIVLADRLDYEWAVQCLAEHR 172
Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
L P+ G LA R +Q HK +
Sbjct: 173 LAQRCTVLLSPVQGKLDPA--QLAEWIVRDRLPVRFQLQLHKIL 214
>gi|254448671|ref|ZP_05062129.1| radical activating enzyme [gamma proteobacterium HTCC5015]
gi|198261679|gb|EDY85966.1| radical activating enzyme [gamma proteobacterium HTCC5015]
Length = 235
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 76/225 (33%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE AG F R +GC L +C +CD+++ G
Sbjct: 26 LKITEIFCSLQGESTLAGLPTTFVRLTGCPL-----------RCTYCDSEYAFF---GGD 71
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTI 122
++ + L D ++ +TGGEPL + L+ AL RG+ +++ET+G +
Sbjct: 72 WWSQEALLDRVDTL------GAPNVCVTGGEPLAQRSCHELMSALCDRGYRVSLETSGAL 125
Query: 123 EPPQ-------GIDWICVSPKAGCDLKIKGGQELK------------LVFPQVNVSPENY 163
+ +D + K +LK +
Sbjct: 126 DISTVDQRVMVVMDIKTPDSREDHRNKFDNLSQLKAGDQVKFVIGSRADYDWAKQRVAER 185
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P +LA R +QTHK +
Sbjct: 186 EIDQRCEVLFSPNYEKLSAR--SLADWIVEDRLPVRFQMQTHKLL 228
>gi|188577425|ref|YP_001914354.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521877|gb|ACD59822.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 213
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 42/228 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M I EIFL+LQGE AG VF R +GC L +C +CDT +
Sbjct: 1 MPRLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH--- 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
G +++D + + R+ +TGGEPL Q + +Q L G+++++ET+
Sbjct: 47 GGEWHDIDDVLAEV------ATHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETS 100
Query: 120 GTIEPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------ 160
G ++ + + + ++K V
Sbjct: 101 GALDVSAVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYEWSREIV 160
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 161 AAHALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 206
>gi|148244548|ref|YP_001219242.1| organic radical activating enzyme [Candidatus Vesicomyosocius
okutanii HA]
gi|146326375|dbj|BAF61518.1| organic radical activating enzyme [Candidatus Vesicomyosocius
okutanii HA]
Length = 213
Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 51/224 (22%), Positives = 83/224 (37%), Gaps = 40/224 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+I EIF ++QGE G +VF R +GC L C +CDT++
Sbjct: 5 KLNINEIFYSIQGEAREVGLPSVFIRLTGCPLK-----------CTYCDTEYAFH---GN 50
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
+D + I++ + Y +TGGEPLLQ + L+ L + +++++ET+G+
Sbjct: 51 NLMEIDAIISEIKQ------YDTTYICVTGGEPLLQKNCYLLLDRLVENNYQVSLETSGS 104
Query: 122 IEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIGFDF 168
I + S K +LK V + + +
Sbjct: 105 INIQDVNALVSIVMDVKTPSSGESEQNKYTNFKKLTVKDQLKFVIGSHSDFDWSVAILNQ 164
Query: 169 ER----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G T LA Q RL +Q HK +
Sbjct: 165 YHTTAGVLFSPVFGNITP--TQLADWILDQQLNVRLQLQLHKLL 206
>gi|305663006|ref|YP_003859294.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans
DSM 17230]
gi|304377575|gb|ADM27414.1| coenzyme PQQ synthesis protein, conjectural [Ignisphaera aggregans
DSM 17230]
Length = 219
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 27/215 (12%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGEG GR AVF R GCNL + CDT + + G
Sbjct: 7 RVSEIFYSIQGEGPFIGRPAVFIRLQGCNLRCTKNSVGWD-----CDTQYAW-DSSGGME 60
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
++D++ D++ + + R+ V+TGGEP++Q + G+ I +ETNGTI
Sbjct: 61 ISIDRVVDIVRQ------YQCRHIVITGGEPMIQQREVIELIKRLDGYAIEIETNGTIPL 114
Query: 125 PQGIDW----ICVSPKAGCDLKI---KGGQELKLVFPQVN-----VSPENYIGFDFERFS 172
+ VSPK ++ + LK V S G + R
Sbjct: 115 DPDFPVEKVRLNVSPKPHAPIRPEYIRYASCLKFVVASEKDLVFVDSFVKIYGVEPSRIW 174
Query: 173 LQPMDGPFLE--ENTNLAISYCFQNPKWRLSVQTH 205
L P E N L Y + ++ + H
Sbjct: 175 LMPASRNVDEHNRNIRLCWEYAKLR-GYNVTPRLH 208
>gi|70732080|ref|YP_261836.1| radical activating enzyme [Pseudomonas fluorescens Pf-5]
gi|68346379|gb|AAY93985.1| radical activating enzyme [Pseudomonas fluorescens Pf-5]
Length = 215
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF--- 46
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G + +D L + + RY +TGGEPL Q + +PL+Q L G+E+++ET
Sbjct: 47 SGGSQRTLDSLLEQV------AGFRPRYVCVTGGEPLAQPNAIPLLQHLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRILDLKTPGSKEAHRNRYENIELLTANDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + LA N RL +Q HK++
Sbjct: 161 LIQYGLERRAGEVLFSPSHHDLNARD--LADWIVADNLPVRLQLQLHKYL 208
>gi|52842258|ref|YP_096057.1| radical activating enzyme [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629369|gb|AAU28110.1| radical activating enzyme [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 217
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 81/232 (34%), Gaps = 46/232 (19%)
Query: 1 MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
MK I EIF +LQGE G VF R +GC L +C++CDT +
Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPL-----------RCQYCDTAYAF 49
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA 115
+ G +D + + + + ++ +TGGEPL Q + L+ L G+ ++
Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVS 100
Query: 116 VETNGTIEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPE- 161
+ET+G + + + +K ++K V
Sbjct: 101 LETSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWA 160
Query: 162 -----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
Y + + P TNLA R +Q HK +
Sbjct: 161 CSMLSEYQLAERVQLLFSPSWNQLNP--TNLANWIIQDKLPVRFQLQLHKIL 210
>gi|21243865|ref|NP_643447.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str.
306]
gi|21109466|gb|AAM37983.1| radical activating enzyme [Xanthomonas axonopodis pv. citri str.
306]
Length = 227
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 48/226 (21%), Positives = 77/226 (34%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + +Q L GF++++ET+G
Sbjct: 63 QWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGA 116
Query: 122 IEPPQGI-------DWICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ D + + + ++K V
Sbjct: 117 LDVSAVDSRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|91200480|emb|CAJ73528.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 211
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 82/223 (36%), Gaps = 42/223 (18%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF ++QGE G VF R +GCNL +C +CDT + + G
Sbjct: 3 INEIFRSIQGETSFTGLPFVFVRLTGCNL-----------RCSYCDTQYAYDE---GNEM 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE- 123
+ + D I+ + +TGGEPL + P+ ++ L R + + VETNG+ +
Sbjct: 49 PISSIIDKID------SFGLKSVCVTGGEPLSNHNTPVLVRELLNRNYTVLVETNGSYDV 102
Query: 124 ------PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPE------NYIG 165
+ +D C + E+K V N Y
Sbjct: 103 SVLPEGTIRILDVKCPDSGMSHKMCWHNISHLTKKDEVKFVLSSRNDYEWARSMISKYHL 162
Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + P+ G A + RL +Q HK+I
Sbjct: 163 TEIAHILMNPVYGMIQPSLI--ASWILEDHINVRLQLQMHKYI 203
>gi|254468966|ref|ZP_05082372.1| radical SAM domain protein [beta proteobacterium KB13]
gi|207087776|gb|EDZ65059.1| radical SAM domain protein [beta proteobacterium KB13]
Length = 212
Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 87/227 (38%), Gaps = 41/227 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M I EIF ++QGE G+ VF R +GC +C +CDT + +G
Sbjct: 1 MSTLRINEIFYSIQGESSRIGKPTVFVRLTGCP-----------MRCTYCDTAYAFHEGQ 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
+ ++ E + + Y +TGGEPL Q + + L+ L + G+++++ET
Sbjct: 50 Q---------QEIEEIIQEIKQFDTNYVTVTGGEPLAQKNCIDLMNQLCELGYQVSLETG 100
Query: 120 GTIEPPQGIDWICV-----SPKAGCD--------LKIKGGQELKLVFPQVN-----VSPE 161
G ++ + + +PK+ D I+ E+K V +
Sbjct: 101 GALDIKDVHAKVKIILDVKTPKSNEDKNNFWPNLENIRTNDEIKFVIQDYEDFSWSMDII 160
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + P+ N LA RL VQ HK +
Sbjct: 161 KKYQLNQGQILFSPVYKVL--ANEQLAGWILKHQLNVRLQVQLHKIL 205
>gi|325923406|ref|ZP_08185071.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865]
gi|325546121|gb|EGD17310.1| organic radical activating enzyme [Xanthomonas gardneri ATCC 19865]
Length = 227
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 76/226 (33%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCHYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + +Q L GF++++ET+G
Sbjct: 63 EWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGA 116
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ + + + ++K V
Sbjct: 117 LDVSAVDPRVSRVVDIKTPASGEEQRNRWENLPLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVTPR--ELADWIVADRLPVRFQMQLHKLL 220
>gi|257095755|ref|YP_003169396.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048279|gb|ACV37467.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 219
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 77/225 (34%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIFL+LQGE G VF R +GC L +C +CDT + G
Sbjct: 10 LKISEIFLSLQGETSRVGLPTVFVRLTGCPL-----------RCVWCDTAYAF---AGGR 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
+ + + + R+ +TGGEPL Q + L+ L G+ +++ET+G +
Sbjct: 56 TMTLPDILAEVAR------HDVRHVCVTGGEPLAQPACLALLSELCDTGYAVSLETSGAL 109
Query: 123 EPPQGIDWIC--VSPKAGCDLKIKGG-----------QELKLV------FPQVNVSPENY 163
+ + V KA + E+K V +
Sbjct: 110 DIGGVDQRVARIVDLKAPGSGESDRNLWANLSLLNSGDEIKFVLAHRADYEWARQVIVER 169
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
D P+ G LA R +Q HK +
Sbjct: 170 RLADVCPLLFSPVAGELAAS--TLAEWILADRLPVRFQLQLHKVL 212
>gi|254282112|ref|ZP_04957080.1| radical SAM domain protein [gamma proteobacterium NOR51-B]
gi|219678315|gb|EED34664.1| radical SAM domain protein [gamma proteobacterium NOR51-B]
Length = 217
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 82/230 (35%), Gaps = 47/230 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF +LQGE G VF R +GC L +C +CDT + +
Sbjct: 5 TTLRITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCVYCDTAYAF---SG 50
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
G +D + + + +TGGEPL Q + + L+ AL RG+++++ET+G
Sbjct: 51 GELTTLDDILERV------AGFSCTRVCVTGGEPLAQPECLSLLTALCDRGYDVSLETSG 104
Query: 121 TIEPPQGIDWI-------------CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
+ + C ++ ++K V + + F
Sbjct: 105 AMPIAGADTRVSRVLDLKTPDSGECHRNDWSNIEQLTPHDQIKFVVCSR--TDYEWARFK 162
Query: 168 FERFSL---------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ F L P G LA RL +Q HK +
Sbjct: 163 LDEFKLPTRVSDVLFSPSYGVVEPA--ELAQWLLDDRLAARLQLQLHKLL 210
>gi|93005554|ref|YP_579991.1| radical SAM family protein [Psychrobacter cryohalolentis K5]
gi|92393232|gb|ABE74507.1| Radical SAM [Psychrobacter cryohalolentis K5]
Length = 244
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 53/238 (22%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE ++G +F R +GC L +C +CDT++ + G
Sbjct: 20 LRLTEIFYSLQGEALNSGLPTIFVRLTGCPL-----------RCVYCDTEYAF---SGGE 65
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R +++ + I + LTGGEPL Q + + L++ L G+EI++ET G +
Sbjct: 66 RQSLETIMATI------ASFPCKRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGAL 119
Query: 123 -------EPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQV---NVSPENYIGF 166
+ +D S ++K V + + I +
Sbjct: 120 TVENVPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRTDYDWAKAKLIDY 179
Query: 167 DFE----RFSLQPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQTHKFI 208
PM E+ LA R +Q HK I
Sbjct: 180 KLNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQLHKII 237
>gi|289661912|ref|ZP_06483493.1| putative radical activating enzyme [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 227
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + +Q L G+++++ET+G
Sbjct: 63 EWHDIDAIVAEVAR------HGVRHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGA 116
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ + + + ++K V
Sbjct: 117 LDVSAVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|197122965|ref|YP_002134916.1| radical SAM protein [Anaeromyxobacter sp. K]
gi|196172814|gb|ACG73787.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
Length = 210
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 88/223 (39%), Gaps = 41/223 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGEG AGR VF RF+GC+L +C +CDT + G
Sbjct: 2 RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFH---GGAD 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ + + R+ LTGGEP+LQ ++P L + L RG+E+AVET+G
Sbjct: 48 MDRAAILAEVAR------HPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQRP 101
Query: 124 PP--QGIDWICVSPKAGCD----------LKIKGGQELKLVFPQVN---VSPENYIGFDF 168
V K +++ E+K V + S E
Sbjct: 102 LDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHAL 161
Query: 169 E---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E + L P G + L RLS+Q HK I
Sbjct: 162 EGRVQVLLSPAWGQVAPRD--LVRWMLESGLDARLSLQVHKVI 202
>gi|153005327|ref|YP_001379652.1| radical SAM domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152028900|gb|ABS26668.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 210
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 80/223 (35%), Gaps = 41/223 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF +LQGEG AGR VF RF+GC+L +C +CD+ + G
Sbjct: 2 RVTEIFFSLQGEGTRAGRPCVFVRFTGCDL-----------RCGYCDSAYAFH---GGRE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
++ I + LTGGEP+LQ L + L RG E+ VET+G
Sbjct: 48 LTRAEILAEIAR------HPAKLVCLTGGEPMLQRELPELARELVARGHEVTVETHGQRP 101
Query: 124 ----PPQGIDWICVSPKAGCDLKI--------KGGQELKLVFPQVNVSPE------NYIG 165
PP+ I + V + + E+K V +
Sbjct: 102 LDALPPETIRIVDVKTPGSREEAKDLAYLDGLRPQDEVKFVVCSEPDYRWSVDVVRRHRL 161
Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G LA RLS+Q HK I
Sbjct: 162 EGRAHLLFSPAWGEVEPR--ELARWILRDGLDARLSLQIHKVI 202
>gi|301063545|ref|ZP_07204071.1| radical SAM domain protein [delta proteobacterium NaphS2]
gi|300442354|gb|EFK06593.1| radical SAM domain protein [delta proteobacterium NaphS2]
Length = 215
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 44/228 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF ++QGE +AG VF R +GCNL +C +CDT + +
Sbjct: 1 MTLRVNEIFYSIQGESSYAGLPCVFVRLTGCNL-----------RCSYCDTRYAY---EE 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNG 120
GG ++ + + I + R +TGGEPL+Q P++ + G+++ +ETNG
Sbjct: 47 GGILEINHIFEQI------APMQCRLVEITGGEPLVQEKTPILIESLLEDGYDVLLETNG 100
Query: 121 TIE-------PPQGIDWICVSPKAGCDLKIKG------GQELKLVF-PQVNVSPENYIGF 166
+ + + +D C S + ++ E+K V + + I
Sbjct: 101 SHDISRVDNRCVKIVDIKCPSSGMHNHMDMENLNRLSAKDEIKFVLGTREDYEYAREIVI 160
Query: 167 DFERFSL-------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
+ L P+ G E LA + RL +Q K+
Sbjct: 161 RMKSRFLKISSVNFSPVFGQLKPE--TLAEWILEDHLPCRLHLQLQKY 206
>gi|29653453|ref|NP_819145.1| radical SAM domain-containing protein [Coxiella burnetii RSA 493]
gi|153207177|ref|ZP_01945956.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177']
gi|154707102|ref|YP_001425323.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111]
gi|161830218|ref|YP_001596061.1| radical SAM domain-containing protein [Coxiella burnetii RSA 331]
gi|165918380|ref|ZP_02218466.1| radical SAM domain protein [Coxiella burnetii RSA 334]
gi|212213378|ref|YP_002304314.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212]
gi|212219428|ref|YP_002306215.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154]
gi|29540715|gb|AAO89659.1| queuosine biosynthesis protein [Coxiella burnetii RSA 493]
gi|120576838|gb|EAX33462.1| radical SAM domain protein [Coxiella burnetii 'MSU Goat Q177']
gi|154356388|gb|ABS77850.1| queuosine biosynthesis protein [Coxiella burnetii Dugway 5J108-111]
gi|161762085|gb|ABX77727.1| radical SAM domain protein [Coxiella burnetii RSA 331]
gi|165917886|gb|EDR36490.1| radical SAM domain protein [Coxiella burnetii RSA 334]
gi|212011788|gb|ACJ19169.1| queuosine biosynthesis protein [Coxiella burnetii CbuG_Q212]
gi|212013690|gb|ACJ21070.1| queuosine biosynthesis protein [Coxiella burnetii CbuK_Q154]
Length = 213
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/227 (22%), Positives = 83/227 (36%), Gaps = 42/227 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M I EIF +LQGE G VF R +GC L +C +CDT + G
Sbjct: 1 MDKLRITEIFYSLQGETKTVGLPTVFVRLTGCPL-----------RCHYCDTPYAFYGGQ 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
L + + Q + RY +TGGEPL Q +PL+Q L + +++ET+
Sbjct: 50 S-------LLLEDVVHQ--VASYQTRYVTVTGGEPLAQPACLPLLQRLCDLNYRVSLETS 100
Query: 120 GTIE----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------NVSPENYIGFDF 168
G ++ P+ I + V ++ + + P + +
Sbjct: 101 GALDISNVDPRVIKIVDVKTPGSKEMARNRFGNFEYLLPHDQVKFVICDRRDYEWAKDII 160
Query: 169 ERFSL--------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
R+ L P ++ LA R +Q HK+
Sbjct: 161 NRYDLISRAEVLFSPSHEQLDKQ--QLADWIVEDRLSVRFQLQLHKY 205
>gi|325914192|ref|ZP_08176545.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC
35937]
gi|325539695|gb|EGD11338.1| organic radical activating enzyme [Xanthomonas vesicatoria ATCC
35937]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 83/226 (36%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCNYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + +Q L GF++++ET+G
Sbjct: 63 QWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGFDVSLETSGA 116
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSP------EN 162
++ + + +P +G + + + ++K V
Sbjct: 117 LDVSEVDTRVSRVVDIKTPASGEEQRNRWDNLALLTARDQIKFVICSRADYEWSRGIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G LA R +Q HK +
Sbjct: 177 HALERRCTVWFSPSKGEVPPR--QLADWIVSDRLPVRFQMQLHKIL 220
>gi|118602444|ref|YP_903659.1| radical SAM domain-containing protein [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|118567383|gb|ABL02188.1| Radical SAM domain protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 213
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 48/228 (21%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+I EIF +LQGEG G +VF R +GC L +C +CDT++
Sbjct: 5 KLNINEIFYSLQGEGREVGLPSVFIRLTGCPL-----------RCTYCDTEYAF---KGN 50
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
+D++ I++ + Y +TGGEPL Q + L+ L K +++++ET+G+
Sbjct: 51 NLMAIDEIIKKIKQ------YDTPYICVTGGEPLAQKNCCLLLNELVKNNYQVSLETSGS 104
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------VFPQVNVSPENYIGFDFERF 171
I + VS D+K E + Q+ + FD+
Sbjct: 105 INIQD----VNVSVSIVMDIKTPDSGEFEQNKYTNIKKLTTKDQLKFVIRSRADFDWSVA 160
Query: 172 SL-----------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
L P+ G T LA Q R+ +Q HK +
Sbjct: 161 ILSQYPTAAGTLFSPVFGDITP--TQLADWILDQQLNVRMQLQLHKLL 206
>gi|294626853|ref|ZP_06705445.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292598867|gb|EFF43012.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 227
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + ++ L G+++++ET+G
Sbjct: 63 QWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGA 116
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSP------EN 162
++ + +P +G + + + ++K V
Sbjct: 117 LDVSAVDPRVSRVVDIKTPGSGEEARNRWENLPLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|325929354|ref|ZP_08190484.1| organic radical activating enzyme [Xanthomonas perforans 91-118]
gi|325540266|gb|EGD11878.1| organic radical activating enzyme [Xanthomonas perforans 91-118]
Length = 227
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + ++ L G+++++ET+G
Sbjct: 63 QWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGA 116
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ + + + ++K V
Sbjct: 117 LDVSAVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|54294940|ref|YP_127355.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens]
gi|53754772|emb|CAH16259.1| hypothetical protein lpl2019 [Legionella pneumophila str. Lens]
Length = 217
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 46/232 (19%)
Query: 1 MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
MK I EIF +LQGE G + VF R +GC L +C++CDT +
Sbjct: 1 MKRFNEQLRITEIFHSLQGESVTVGLLTVFVRLTGCPL-----------RCQYCDTAYAF 49
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA 115
+ G +D + + + + ++ +TGGEPL Q +PL+ L G+ ++
Sbjct: 50 ---SGGEVVEIDDILNKV------ASYQCQHVCVTGGEPLAQPGCIPLLSKLCDAGYSVS 100
Query: 116 VETNGTIEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPE- 161
+ET+G + + + +K ++K V
Sbjct: 101 LETSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWA 160
Query: 162 -----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
Y + + P T+LA R +Q HK +
Sbjct: 161 CSMLSEYQLAERVQLLFSPSWNQLNP--TDLANWIIQDKLPVRFQLQLHKIL 210
>gi|119504267|ref|ZP_01626347.1| putative radical activating enzyme [marine gamma proteobacterium
HTCC2080]
gi|119459775|gb|EAW40870.1| putative radical activating enzyme [marine gamma proteobacterium
HTCC2080]
Length = 219
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 43/226 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CDT++ G
Sbjct: 9 LRITEIFHSLQGEARSVGLPTVFVRLTGCPL-----------RCVWCDTEYAFSGGK--- 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
+ L + +TGGEPL Q + +PL++ L G+E+++ET+G +
Sbjct: 55 ------ILALTQILQQIKSFSCPRVCVTGGEPLAQPESLPLLKQLCDEGYEVSLETSGAL 108
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-----------NVSPENYIGFDFERF 171
+ + + L ++ + ++ F +
Sbjct: 109 PIADVDRRVSRVMDLKAPDSGESHRNLWDNIAELTPHDQIKFVISSRRDYDWARFKVDEL 168
Query: 172 SL---------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+L P G LA R +Q HK +
Sbjct: 169 ALAGRVGDILFSPTHGELQPR--ELAEWLLQDRVPGRFQLQLHKLL 212
>gi|104783064|ref|YP_609562.1| radical activating enzyme [Pseudomonas entomophila L48]
gi|95112051|emb|CAK16778.1| putative radical activating enzyme [Pseudomonas entomophila L48]
Length = 215
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF--- 46
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G +D + + + + RY +TGGEPL Q + +PL+Q L G+E+++ET
Sbjct: 47 SGGTVRTLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIK------GGQELKLVFPQVNVSPENYIG 165
+G ++ + + + + ++K V
Sbjct: 101 SGALDIAGTDTRVSRVVDLKTPGSEESHRNRYENIELLTRNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P T+LA N R +Q HK +
Sbjct: 161 LIQFNLAERAGEVLFSP--SHHQVSATDLADWIVADNLPVRFQLQLHKLL 208
>gi|312623403|ref|YP_004025016.1| Radical SAM domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203870|gb|ADQ47197.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 225
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 41/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++ E F++++GEG +G AVF RF+GCNL +C +CDT + + +
Sbjct: 13 KFNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEY 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG- 120
++D L + I I + LTGGEPL+Q LI L GFE+ +ETNG
Sbjct: 61 EEIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGS 114
Query: 121 ------TIEPPQGIDWICVSPKAGCDLKIKGGQEL--KLVFPQVNVSPENYIGFD----- 167
+ +D+ C S + + L K V V + E+ +
Sbjct: 115 VSIKHVPRDAIITMDYKCPSSGMEHRMIVNNIHLLGEKDVIKFVVATYEDLKTAERIIKT 174
Query: 168 ---FERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
P+ G + + +N + R+ +Q HK I
Sbjct: 175 FKPRCNIYFSPVFGKIEPR---EIVKFVLENGLFEARVQLQLHKII 217
>gi|326573561|gb|EGE23524.1| radical SAM superfamily protein [Moraxella catarrhalis 101P30B1]
Length = 246
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE AG +F R +GC L +C +CDT + + G
Sbjct: 28 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 73
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G +
Sbjct: 74 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 127
Query: 123 EPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQV-------NVSPEN 162
+ SP +G K ++K+V N+ ++
Sbjct: 128 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 187
Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ L PM + T+LA R +Q HK I
Sbjct: 188 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 239
>gi|90022171|ref|YP_527998.1| putative radical activating enzyme [Saccharophagus degradans 2-40]
gi|89951771|gb|ABD81786.1| Radical SAM [Saccharophagus degradans 2-40]
Length = 216
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 47/226 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CD+++ G
Sbjct: 6 LRITEIFHSLQGEARTVGLPTVFVRLTGCPL-----------RCHYCDSEYAFH---GGE 51
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
R + +Q+ + + +Y +TGGEPL Q + L+ L G+ +++ET+G +
Sbjct: 52 RLSFEQILEQV------AGFGAKYVCVTGGEPLAQPGCIDLLSRLCDLGYNVSLETSGAM 105
Query: 123 EPPQGIDWICV-----SPKAGCDLKI--------KGGQELKLVFPQVNVSPENYIGFDFE 169
+ + + + +P +G K K ++K V ++ F +
Sbjct: 106 DVSKVDHRVSIVLDLKTPASGEQDKNLYTNIPLLKLKDQVKFVICDRG--DYDWARFQLD 163
Query: 170 RFSL---------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
+ L P + LA R +Q HK
Sbjct: 164 QLQLVSKVGDVLFSPSFEQLAPK--QLAEWILDDRLPVRFQMQLHK 207
>gi|330834175|ref|YP_004408903.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
gi|329566314|gb|AEB94419.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
Length = 210
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF ++QGEG GR + F R +GCNL +C +CDT ++
Sbjct: 1 MRYWIVEIFTSIQGEGTLIGRPSNFVRLAGCNL-----------RCVWCDTKNSWMREDG 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ D++ + ++ +TGGEPLLQ +PL +L +GF +A+ETNGT
Sbjct: 50 ----EPMEIEDILSKL----STSVKWTTITGGEPLLQDILPLAVSLKNKGFRVAIETNGT 101
Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQEL----KLVFPQVNVSPENYIGF---- 166
++P +D VSPK +G LK + K V + F
Sbjct: 102 LKPKPELRKVVDIFSVSPKLLNSGHRLKYDFSDDWATYYKFVIVNAKEDLKEVKDFVDRQ 161
Query: 167 --DFERFSLQPMDGPFLE--ENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211
D E+ +QP DG L+ + +R+ Q H+ I R
Sbjct: 162 HIDPEKVIVQP-DGNRLDYVYALRELSDAVMELGLPFRVLPQLHRIISYR 210
>gi|308273462|emb|CBX30064.1| hypothetical protein N47_D28730 [uncultured Desulfobacterium sp.]
Length = 219
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 44/229 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M L I EIF ++QGE ++G F R +GCNL +C +CDT + +G+
Sbjct: 6 MTLL-INEIFYSIQGESLYSGLPCAFIRLAGCNL-----------RCAYCDTKYAYNEGS 53
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
+ D L I E +TGGEPL+Q + P+ I+ L F + +ETN
Sbjct: 54 E---IETDHLVKKISE------FGCPLVEITGGEPLIQEETPVLIEKLLDNKFSVLLETN 104
Query: 120 G-------TIEPPQGIDWICVSPKAGCD------LKIKGGQELKLVFPQV-------NVS 159
G + ID C + ++ ++K V ++
Sbjct: 105 GSLDISYIDKRCIKIIDIKCPTSGESEKNNLANINRLNQKDQIKFVIGNRVDYEFAKDIV 164
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ F E P+ E + LA R +Q HK I
Sbjct: 165 KQIPKTFFRENILFSPIYNKL--ELSELARWMLKDKLTVRFHLQLHKII 211
>gi|326560168|gb|EGE10557.1| radical SAM superfamily protein [Moraxella catarrhalis 103P14B1]
gi|326564255|gb|EGE14489.1| radical SAM superfamily protein [Moraxella catarrhalis 46P47B1]
gi|326566195|gb|EGE16348.1| radical SAM superfamily protein [Moraxella catarrhalis 12P80B1]
gi|326571649|gb|EGE21664.1| radical SAM superfamily protein [Moraxella catarrhalis BC7]
gi|326573039|gb|EGE23015.1| radical SAM superfamily protein [Moraxella catarrhalis CO72]
Length = 238
Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE AG +F R +GC L +C +CDT + + G
Sbjct: 20 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 65
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G +
Sbjct: 66 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 119
Query: 123 EPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQV-------NVSPEN 162
+ SP +G K ++K+V N+ ++
Sbjct: 120 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 179
Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ L PM + T+LA R +Q HK I
Sbjct: 180 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 231
>gi|330959274|gb|EGH59534.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 215
Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
V L D+IE+ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TVQALDDIIEQ---VASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVARNRYENIELLTPNDQVKFVLCSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|198282218|ref|YP_002218539.1| Radical SAM domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667706|ref|YP_002424583.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198246739|gb|ACH82332.1| Radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519919|gb|ACK80505.1| radical SAM domain protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 214
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 82/226 (36%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIF +LQGE GR A F R +GC L +CR+CDT + G
Sbjct: 4 RLRITEIFHSLQGETRSVGRPATFVRLTGCPL-----------RCRYCDTAYAFHGGEW- 51
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGT 121
++ +++E+ R V+TGGEPL +PL+ L G E+ +ET+G
Sbjct: 52 -----RRIPEILEQ---VRAGGNRLVVVTGGEPLAQADVLPLMTQLCDAGHEVFLETSGA 103
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKI--------KGGQELKLV------FPQVNVSPEN 162
+ + SP +G + ++K V +
Sbjct: 104 LSLAGVDTRVVKVLDLKSPDSGECERNLWENLPLLNPQDQIKFVLCSRADYDWAKEVLAR 163
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P G + LA + RL +Q HK I
Sbjct: 164 EALAERCEILFSPSHGTLALRD--LAEWMLADHLPVRLQIQLHKLI 207
>gi|258646637|ref|ZP_05734106.1| putative sigma-54 dependent DNA-binding response regulator
[Dialister invisus DSM 15470]
gi|260404058|gb|EEW97605.1| putative sigma-54 dependent DNA-binding response regulator
[Dialister invisus DSM 15470]
Length = 219
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 85/231 (36%), Gaps = 43/231 (18%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
MK + + EIF ++ GEG G +AVF RF+GCN +C +CDT + +
Sbjct: 1 MKNKFPVAEIFDSIDGEGKRTGYMAVFVRFAGCN-----------IRCTYCDTAYALKES 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++L I + TGGEPLL + L + G+EI +ETN
Sbjct: 50 DAEEFLTKEELLGRI------RSYPWKRITFTGGEPLLHPLQEICDILGEEGYEINIETN 103
Query: 120 GTIEPPQ--------GIDWICVSPKAGCDLKIKGGQEL------------KLVFPQVNVS 159
G + +D+ C +++ +EL K +
Sbjct: 104 GAVPLLARRSQNLFYTMDYKCTDSGMKSFMRLPNLKELTEEDVLKFVVSSKTDLEDMKEI 163
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCF--QNPKWRLSVQTHKFI 208
Y +F + P+ G + Y + + + VQ HK I
Sbjct: 164 IIKYFPRGGPKFYVSPVWGKIEPR---ELVEYVRKEKLAEVCVQVQLHKII 211
>gi|84623212|ref|YP_450584.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84367152|dbj|BAE68310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 227
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + +Q L G+++++ET+G
Sbjct: 63 EWHDIDDVLAEV------ATHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGA 116
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ + + + ++K V
Sbjct: 117 LDVSAVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|254167036|ref|ZP_04873889.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
gi|197623892|gb|EDY36454.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
Length = 209
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 43/224 (19%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGEG + G F R +GCNL +C +CDT++ + G
Sbjct: 2 KVNEIFTSIQGEGIYIGVSMFFVRLTGCNL-----------RCEWCDTEYAFYE---GEE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
++D + +EE ++ +TGGEPLLQ +V LI L ++ ++I +ETNG+I
Sbjct: 48 MSIDSIIKKVEE------SGMKWVCITGGEPLLQEEVYKLIDILLRKDYKILLETNGSIL 101
Query: 124 PPQ---------GIDWICVSPKAGCDLKIKGGQEL------KLVFPQVNV---SPENYIG 165
+ +D S K ++ + L K V N + +
Sbjct: 102 IDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKFVIMDENDFEYAKKIIEK 161
Query: 166 FDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ ++ QP+ G L+ LA + R+ Q HK I
Sbjct: 162 YEIDKEIIFQPVGGTNLKW---LAEKVVEEKLNVRVLPQLHKII 202
>gi|218781985|ref|YP_002433303.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
gi|218763369|gb|ACL05835.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
Length = 215
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF +QGE + G VF R SGCNL +CR+CDT +
Sbjct: 1 MALDVCEIFYGIQGESTYQGMPCVFIRLSGCNL-----------RCRWCDTGYAY---DA 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
G ++ ++ + G+ +TGGEPLLQ + P L+ A G + +ETNG
Sbjct: 47 GLTMSISEIME------KAGQFGCPIVEVTGGEPLLQKETPALVDAFLNIGLLVLLETNG 100
Query: 121 TIE-------PPQGIDWICVSPKA------GCDLKIKGGQELKLVF--------PQVNVS 159
+ + + +D C S ++ ELK V + V
Sbjct: 101 SQDIAKVDSRCIRIVDVKCPSSGMEEHNDYSNLSRMTEKDELKFVIASREDYEFARKRVR 160
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ G P+ G + LA + RL +Q HKFI
Sbjct: 161 LLDFDGCRMNAIHFSPVFGELDPK--TLAEWILQDRLEVRLHLQMHKFI 207
>gi|166712980|ref|ZP_02244187.1| radical activating enzyme [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 227
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + +Q L G+++++ET+G
Sbjct: 63 EWHDIDDVLAEV------ATHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGA 116
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ + + + ++K V
Sbjct: 117 LDVSTVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|167035186|ref|YP_001670417.1| radical SAM domain-containing protein [Pseudomonas putida GB-1]
gi|166861674|gb|ABZ00082.1| Radical SAM domain protein [Pseudomonas putida GB-1]
Length = 215
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF--- 46
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G +D + + + + RY +TGGEPL Q + +PL+Q L G+E+++ET
Sbjct: 47 SGGTLRTLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIK------GGQELKLVFPQVNVSPENYIG 165
+G ++ + + + + ++K V ++
Sbjct: 101 SGALDITGTDTRVSRVVDLKTPGSEESHRNRYENIEQLTRNDQVKFVICSR--EDYDWAV 158
Query: 166 FDFERFSLQPMDGPFL-------EENTNLAISYCFQNPKWRLSVQTHKFI 208
+++L G L + ++LA N R +Q HK +
Sbjct: 159 SKLIQYNLSERAGEVLFSPSHHQVKASDLADWIVADNLPVRFQLQLHKLL 208
>gi|225874258|ref|YP_002755717.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
gi|225791949|gb|ACO32039.1| radical SAM domain protein [Acidobacterium capsulatum ATCC 51196]
Length = 226
Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 51/236 (21%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EI+ ++QGE AGR +F R +GCNL +C +CD+++ G
Sbjct: 2 RLIEIYKSVQGESSFAGRPCIFVRLAGCNL-----------RCSWCDSEYTFT---GGEA 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
++ D++ IE R TGGEPLLQ +P ++ L G+E+ +ET+G
Sbjct: 48 FSDDEILARIEALAPV-----RLVEFTGGEPLLQAKQLIPFMERLLAAGYELMIETSGER 102
Query: 123 EPPQGIDWI-----CVSPKAGCDLKI--------KGGQELKLVFPQ-------VNVSPEN 162
+ + P +G K E+K V +
Sbjct: 103 PLREVPAAVHKIVDVKCPGSGEAGKFLMENLEFLTPRDEVKFVIADRADYEFAREFLRAH 162
Query: 163 YIGFDFERFSLQPMDGP--FLEENT-------NLAISYCFQN-PKWRLSVQTHKFI 208
+ + L P E +T L + + ++ RLS+Q HK+I
Sbjct: 163 ALDRKAGQILLSPTFSKTPTPERSTSNATLDPRLLVEWMLEDGLPARLSLQIHKYI 218
>gi|326569745|gb|EGE19795.1| radical SAM superfamily protein [Moraxella catarrhalis BC8]
Length = 238
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE AG +F R +GC L +C +CDT + + G
Sbjct: 20 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 65
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G +
Sbjct: 66 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAITLMHKLIQSGYEVSLETAGAL 119
Query: 123 EPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQV-------NVSPEN 162
+ SP +G K ++K+V N+ ++
Sbjct: 120 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 179
Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ L PM + T+LA R +Q HK I
Sbjct: 180 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 231
>gi|218961765|ref|YP_001741540.1| Radical SAM [Candidatus Cloacamonas acidaminovorans]
gi|167730422|emb|CAO81334.1| Radical SAM [Candidatus Cloacamonas acidaminovorans]
Length = 209
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 88/228 (38%), Gaps = 41/228 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K ++ EIF +LQGE ++G +F R S CNL +C +CDT + +G
Sbjct: 3 KHLNVTEIFYSLQGESAYSGYPCIFIRLSECNL-----------RCVYCDTQYAFGKGK- 50
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
++ ++EE + +TGGEPLLQ D L + L+K ++I +ETNG
Sbjct: 51 -----SMAISSIMEE---VKKYPCSLTEITGGEPLLQEDVDALFEELHKSSYKILLETNG 102
Query: 121 TI--EPPQGIDWICVSPKAGCD-----------LKIKGGQELKLVFPQVN-----VSPEN 162
I E V K + ELK V N +S
Sbjct: 103 AISLEKVPDYVIKIVDVKTPGSGMVDAFLKDNLDYLNDKDELKFVLTDKNDYQFALSFLA 162
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
P+ + LA K +L++Q HK IGI
Sbjct: 163 QYKPKVNIIHFSPLTEVLEPK--ELAKWMLKDGIKAKLTLQLHKIIGI 208
>gi|296112585|ref|YP_003626523.1| radical SAM superfamily protein [Moraxella catarrhalis RH4]
gi|295920279|gb|ADG60630.1| radical SAM superfamily protein [Moraxella catarrhalis RH4]
gi|326561347|gb|EGE11705.1| radical SAM superfamily protein [Moraxella catarrhalis 7169]
gi|326570776|gb|EGE20801.1| radical SAM superfamily protein [Moraxella catarrhalis BC1]
gi|326577706|gb|EGE27582.1| radical SAM superfamily protein [Moraxella catarrhalis O35E]
Length = 266
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE AG +F R +GC L +C +CDT + + G
Sbjct: 48 LKLTEIFYSLQGEALTAGLPTIFIRLTGCPL-----------RCHYCDTTYSF---SGGE 93
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R+ +D + I + +TGGEPL Q + + L+ L + G+E+++ET G +
Sbjct: 94 RWGLDDIMTHIAQ------YPCWRVCVTGGEPLAQPNAIALMHKLIQSGYEVSLETAGAL 147
Query: 123 EPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQV-------NVSPEN 162
+ SP +G K ++K+V N+ ++
Sbjct: 148 SVANVPPLVSKVMDLKSPSSGEADKNLWENLAHLTLHDQIKIVIANRTDYEWAKNIITKH 207
Query: 163 YIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ L PM + T+LA R +Q HK I
Sbjct: 208 ALDDKVGTIWLSPMFNIQENTSHAPKLATDLAEWILKDALPVRFGLQLHKII 259
>gi|78048825|ref|YP_365000.1| putative radical activating enzyme [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037255|emb|CAJ25000.1| putative radical activating enzyme [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 227
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + ++ L G+++++ET+G
Sbjct: 63 QWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGA 116
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------EN 162
++ + + + ++K V
Sbjct: 117 LDVSAVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKFVICSRVDYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HTLDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|294665414|ref|ZP_06730702.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292604825|gb|EFF48188.1| radical activating enzyme [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 227
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + ++ L G+++++ET+G
Sbjct: 63 QWHDIDAIVAEV------ASHGVRHVCVTGGEPLAQKRCLVLLEKLCDAGYDVSLETSGA 116
Query: 122 IEPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLVFPQVNVSP------EN 162
++ + +P +G + + ++K V
Sbjct: 117 LDVSAVDPRVSRVVDIKTPGSGEEARNCWENLPLLTARDQIKFVICSRADYEWSREIVAA 176
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P LA R +Q HK +
Sbjct: 177 HALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLHKLL 220
>gi|220917757|ref|YP_002493061.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955611|gb|ACL65995.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 210
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 86/221 (38%), Gaps = 41/221 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGEG AGR VF RF+GC+L +C +CDT + G
Sbjct: 2 RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFH---GGAD 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ + + R+ LTGGEP+LQ ++P L + L RG+E+AVET+G
Sbjct: 48 MDRAAILAEVAR------HPARFVCLTGGEPMLQRELPDLARELLARGYEVAVETHGQRP 101
Query: 124 PP--QGIDWICVSPKAGCD----------LKIKGGQELKLVFPQVN---VSPENYIGFDF 168
V K +++ E+K V + S E
Sbjct: 102 LDALPAEAIRVVDVKTPGSGEVATDLAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHAL 161
Query: 169 E---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
E + P G + L RLS+Q HK
Sbjct: 162 EGRVQVLFSPAWGQVAPRD--LVRWMLESGLDARLSLQVHK 200
>gi|71065297|ref|YP_264024.1| radical activating enzyme [Psychrobacter arcticus 273-4]
gi|71038282|gb|AAZ18590.1| probable radical activating enzyme [Psychrobacter arcticus 273-4]
Length = 244
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 50/238 (21%), Positives = 80/238 (33%), Gaps = 53/238 (22%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF +LQGE +G +F R +GC L +C +CDT++ + G
Sbjct: 20 LRLTEIFYSLQGEALTSGLPTIFVRLTGCPL-----------RCVYCDTEYAF---SGGE 65
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R +++ + I + LTGGEPL Q + + L++ L G+EI++ET G +
Sbjct: 66 RQSLETMMATI------ASFPCKRICLTGGEPLAQPNAIELMKRLLNDGYEISLETAGAL 119
Query: 123 -------EPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFE 169
+ +D S ++K V
Sbjct: 120 TVENVPPTVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRADYDWAKAKLVEY 179
Query: 170 RF-------SLQPMDGPFLEE------------NTNLAISYCFQNPKWRLSVQTHKFI 208
+ PM E+ LA R +Q HK I
Sbjct: 180 KLNELVGTVWFSPMFNVAHEDTVNDNSPEVPVLARELAEWMLADALPVRFQLQLHKII 237
>gi|331016448|gb|EGH96504.1| radical SAM domain protein [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 215
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 83/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+I RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDII---GQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|312128624|ref|YP_003993498.1| Radical SAM domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311778643|gb|ADQ08129.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
108]
Length = 225
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 41/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++ E F++++GEG +G AVF RF+GCNL +C +CDT + + +
Sbjct: 13 KFNVVEKFVSIEGEGIRSGYPAVFVRFAGCNL-----------RCSWCDTKYAN-ENPEY 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG- 120
++D L + I I + LTGGEPL+Q LI L GFE+ +ETNG
Sbjct: 61 EEIDIDNLMNFITSTGI------KRVTLTGGEPLIQPYIYLLIDRLISEGFEVNIETNGS 114
Query: 121 ------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLV---FPQVNVSPENYIG 165
+ +D+ C S + + LK V + + +
Sbjct: 115 VSIKHVPRDAIITMDYKCPSSGMEDRMIVDNIHFLGQKDVLKFVVSTYEDLKTAERIIKT 174
Query: 166 FDF-ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
F P+ G + + +N R+ +Q HK I
Sbjct: 175 FKPRCNIFFSPVFGKIEPR---EIVKFVLENGLFDARVQLQLHKII 217
>gi|170723151|ref|YP_001750839.1| radical SAM domain-containing protein [Pseudomonas putida W619]
gi|169761154|gb|ACA74470.1| Radical SAM domain protein [Pseudomonas putida W619]
Length = 215
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF--- 46
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G ++D + + + + RY +TGGEPL Q + +PL+Q L G+E+++ET
Sbjct: 47 SGGTVRSLDSIMEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC--VSPKAGCDLKIK-----------GGQELKLVFPQVNVSPENYIG 165
+G ++ + V K + ++K V
Sbjct: 101 SGALDISATDIRVSRVVDLKTPGSEESHRNLYENIEHLTRNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + ++LA N R +Q HK +
Sbjct: 161 LIQYNLAERAGEVLFSP--SHHQVKASDLADWIVADNLPVRFQLQLHKLL 208
>gi|319786288|ref|YP_004145763.1| radical SAM protein [Pseudoxanthomonas suwonensis 11-1]
gi|317464800|gb|ADV26532.1| Radical SAM domain protein [Pseudoxanthomonas suwonensis 11-1]
Length = 219
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C++CDT + G
Sbjct: 9 RLRITEIFLSLQGEANAAGWPTVFVRLTGCPL-----------RCQYCDTAYAFH---GG 54
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
+ +D + + R+ +TGGEPL Q + L++ L G ++++ET+G
Sbjct: 55 QWWEIDAILAEVAR------HGVRHVCVTGGEPLAQKRCLDLLRRLCDAGHDVSLETSGA 108
Query: 122 IEPPQGIDWIC--VSPKAGCDLKIKGG-----------QELKLVFP-QVNVSPENYIGFD 167
++ + V K ++ ++K V + + + +
Sbjct: 109 LDIAGVDPRVSRVVDLKTPGSAEMARNRLENIPLLTARDQVKFVLCGRADYEWARDMVAE 168
Query: 168 F-----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P G E +LA R +Q HK +
Sbjct: 169 HGLSARCDVLFSPSKGQL--EARDLADWIVADRLPVRFQMQLHKIL 212
>gi|257452357|ref|ZP_05617656.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|257465851|ref|ZP_05630162.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917008|ref|ZP_07913248.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|317058900|ref|ZP_07923385.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313684576|gb|EFS21411.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313690883|gb|EFS27718.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 222
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 46/234 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + EIF ++ GEG AG++A+F RF CNL C +CDT + + +
Sbjct: 1 MPKYKVVEIFESINGEGKKAGQLALFIRFQYCNLN-----------CSYCDTKWANSKNS 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
+++++ L +E+ I + LTGGEPLLQ D+ L ++ FEI +ET
Sbjct: 50 PFTWMSLEEILSLAKEKRI------KNITLTGGEPLLQTDIRSLLEAFSKEKQFEIEIET 103
Query: 119 NGTIE-----PPQGIDWICVSPKAGCDLKIK-----------GGQELKLV------FPQV 156
NG++ + + K + +K V +
Sbjct: 104 NGSVPLETFRNIENSPSFTIDYKLPESHMEEYMSLENFSSVHRNDTVKFVVSNRKDLEKA 163
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E Y P+ G + + ++ + +Q HKFI
Sbjct: 164 KEIIEQYSLIGKCAVYFSPVFGKI---ALPSIVDFMKEHHLNGVNMQLQMHKFI 214
>gi|213969194|ref|ZP_03397333.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
gi|301384811|ref|ZP_07233229.1| radical SAM domain protein [Pseudomonas syringae pv. tomato Max13]
gi|302063535|ref|ZP_07255076.1| radical SAM domain protein [Pseudomonas syringae pv. tomato K40]
gi|302130601|ref|ZP_07256591.1| radical SAM domain protein [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|213926192|gb|EEB59748.1| radical SAM domain protein [Pseudomonas syringae pv. tomato T1]
Length = 215
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQETLRITEIFHSLQGETRTAGLPTVFIRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDIV---GQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|254167785|ref|ZP_04874635.1| radical SAM domain protein [Aciduliprofundum boonei T469]
gi|289597123|ref|YP_003483819.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
gi|197623313|gb|EDY35878.1| radical SAM domain protein [Aciduliprofundum boonei T469]
gi|289534910|gb|ADD09257.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
Length = 209
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 43/224 (19%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E+F ++QGEG + G F R +GCNL +C +CDT++ + G
Sbjct: 2 KVNEMFTSIQGEGIYIGVPMFFVRLTGCNL-----------RCEWCDTEYAFYE---GEE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
++D + +EE ++ +TGGEPLLQ +V LI L ++ ++I VETNG+I
Sbjct: 48 MSIDSIIKKVEE------SGMKWVCITGGEPLLQEEVYKLIDILLRKDYKILVETNGSIL 101
Query: 124 PPQ---------GIDWICVSPKAGCDLKIKGGQEL------KLVFPQVNV---SPENYIG 165
+ +D S K ++ + L K V N + +
Sbjct: 102 IDKLPTEENLVISLDIKTPSSKMERAMRFENLNYLGPKDFVKFVIMDENDFEYAKKIIEK 161
Query: 166 FDFER-FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ ++ QP+ L+ LA + R+ Q HK I
Sbjct: 162 YEIDKEIIFQPVGSTNLKW---LAEKVVEEKLNVRVLPQLHKII 202
>gi|15921783|ref|NP_377452.1| hypothetical protein ST1490 [Sulfolobus tokodaii str. 7]
gi|15622570|dbj|BAB66561.1| 212aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 212
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y I EIF ++QGEG G + F R +GC+L +C +CDT + +
Sbjct: 1 MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHL-----------RCIWCDTKYAWHK-Y 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G +++Q+ D I+++ ++ +TGGEPLLQ +PL++AL ++ VET+G
Sbjct: 49 DGEEMSIEQILDKIDKRI-------KFTTITGGEPLLQDILPLVEALKSLNHKVLVETSG 101
Query: 121 TIEPPQG----IDWICVSPKAGCDLKIKGGQ--------ELKLVFPQVNVSPENYIGF-- 166
TI+P + +D VSPK K V + I F
Sbjct: 102 TIKPSKKLRELVDIFSVSPKLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFIR 161
Query: 167 ----DFERFSLQPMDGPFL-EENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211
+ + LQP E I + +R+ Q H+ +GI+
Sbjct: 162 ENNIEPSKVILQPDGRKENYTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ 212
>gi|86157724|ref|YP_464509.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774235|gb|ABC81072.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
Length = 210
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 86/223 (38%), Gaps = 41/223 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGEG AGR VF RF+GC+L +C +CDT + G R
Sbjct: 2 RVTEIFFSIQGEGSRAGRPCVFVRFTGCDL-----------RCGYCDTAYAFHGGVDMDR 50
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
V R+ LTGGEP+LQ ++P L + L RG+E+AVET+G
Sbjct: 51 AAV---------LAEVARHPARFVCLTGGEPMLQRELPDLARDLVARGYEVAVETHGQRP 101
Query: 124 PP--QGIDWICVSPKAGCD----------LKIKGGQELKLVFPQVN---VSPENYIGFDF 168
V K +++ E+K V + S E
Sbjct: 102 LDALPAEAIRVVDVKTPGSGEVTTDFAYLDRLQPHDEVKFVVCSEDDFRWSREVVRRHAL 161
Query: 169 E---RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E + P G + L RLS+Q HK I
Sbjct: 162 EGRVQVLFSPAWGQVAPRD--LVRWMLESGLDARLSLQVHKVI 202
>gi|237800229|ref|ZP_04588690.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237806417|ref|ZP_04593121.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331023086|gb|EGI03143.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331027530|gb|EGI07585.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 215
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDIV---GQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTPNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLERRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|289626505|ref|ZP_06459459.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289650951|ref|ZP_06482294.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868621|gb|EGH03330.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 215
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF--- 46
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G + +D + + RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 47 SGGTIHTLDDIVGQVAA------YRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIK------GGQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENIELLTRNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLERRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|330872644|gb|EGH06793.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330964833|gb|EGH65093.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 215
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDIV---GQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVARNRYENMELLTPNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|28871114|ref|NP_793733.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28854364|gb|AAO57428.1| radical SAM domain protein [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 215
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQETLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDIV---GQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVARNRYENMALLTPNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|26987960|ref|NP_743385.1| radical SAM domain protein [Pseudomonas putida KT2440]
gi|148546497|ref|YP_001266599.1| radical SAM domain-containing protein [Pseudomonas putida F1]
gi|24982673|gb|AAN66849.1|AE016313_8 radical activating enzyme [Pseudomonas putida KT2440]
gi|5514780|emb|CAB50782.1| hypothetical protein [Pseudomonas putida]
gi|148510555|gb|ABQ77415.1| Radical SAM domain protein [Pseudomonas putida F1]
gi|313497577|gb|ADR58943.1| Radical SAM domain protein [Pseudomonas putida BIRD-1]
Length = 215
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF--- 46
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G +D + + + + RY +TGGEPL Q + +PL+Q L G+E+++ET
Sbjct: 47 SGGTVRTLDSILEQV------AGFKPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIK------GGQELKLVFPQVNVSPENYIG 165
+G ++ + + + + ++K V
Sbjct: 101 SGALDIAGTDTRVSRVVDLKTPGSEESHRNRYENIEQLTRNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + LA N R +Q HK +
Sbjct: 161 LIQYNLAERAGEVLFSPSHHQVNASD--LADWIVADNLPVRFQLQLHKLL 208
>gi|282895310|ref|ZP_06303512.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9]
gi|281199616|gb|EFA74476.1| hypothetical protein CRD_00006 [Raphidiopsis brookii D9]
Length = 208
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 3 LYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I E F T+QGEG G + F R SGC L C +CDT + G
Sbjct: 7 KLPIHETFQSTVQGEGYWTGSLVDFIRLSGCPL-----------GCPWCDTGYA-DGGAN 54
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
R+ + +L+ E V++GGEP + +P L+QAL G ++++ET+G
Sbjct: 55 LPRFE-RTIGELLAEIK------SPRIVISGGEPFIHKHLPELVQALLGAGKQVSIETSG 107
Query: 121 -TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER--------- 170
+ WI +SPK + K + + + E DF +
Sbjct: 108 SFWKEVSLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIDFYQEYLSARPDL 167
Query: 171 -FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP + + Q P ++LS+QTHK+IG++
Sbjct: 168 YVYLQPEWNSSSKSLALILQLL-QQKPDYKLSLQTHKYIGLQ 208
>gi|71735883|ref|YP_275904.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487001|ref|ZP_05641042.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298488200|ref|ZP_07006236.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71556436|gb|AAZ35647.1| radical SAM domain protein [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298157258|gb|EFH98342.1| Queuosine Biosynthesis QueE Radical SAM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323043|gb|EFW79132.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329685|gb|EFW85674.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330877970|gb|EGH12119.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330892249|gb|EGH24910.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
mori str. 301020]
gi|330988978|gb|EGH87081.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009357|gb|EGH89413.1| radical SAM domain-containing protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 215
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDIV---GQVAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIK------GGQELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENIELLTRNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLERRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|325274586|ref|ZP_08140642.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51]
gi|324100228|gb|EGB98018.1| radical SAM domain-containing protein [Pseudomonas sp. TJI-51]
Length = 215
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I E+F +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAF--- 46
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ G +D + + + RY +TGGEPL Q + +PL+Q L G+E+++ET
Sbjct: 47 SGGTVRTLDSILEQV------AGFRPRYVCVTGGEPLAQPNALPLLQRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC--VSPKAGCDLKIK-----------GGQELKLVFPQVNVSPENYIG 165
+G ++ + V K + ++K V
Sbjct: 101 SGALDIAGTDTRVSRVVDLKTPGSEESHRNLYSNIDQLTRNDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + LA N R +Q HK +
Sbjct: 161 LIQYNLAERAGEVLFSPSHHQVSASD--LADWIVADNLPVRFQLQLHKLL 208
>gi|219850957|ref|YP_002465389.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
gi|219545216|gb|ACL15666.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
Length = 202
Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 87/224 (38%), Gaps = 40/224 (17%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIFL+LQGEG + G+ +F R SGCNL C +CDT + T G
Sbjct: 2 KISEIFLSLQGEGVYQGKACIFIRLSGCNLS-----------CSWCDTRYA---CTLGEE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGE--PLLQVDVPLIQALNKRGFEIAVETNGTI 122
+Q+ + + E+ +TGGE +PL++AL RG+ + +ETNGTI
Sbjct: 48 MTTEQVLERVSEE------NCSLICITGGEPLLQQDQLLPLLKALEDRGYIVGIETNGTI 101
Query: 123 EPPQGIDWICVSPKAGCD-----------LKIKGGQELKLVFPQVNVSPENYIGFDFE-- 169
+ ++ + C I+ +K V
Sbjct: 102 DFIASGEYASICMDVKCPSSGETSDLSLLEHIRVTDSVKFVVKDQQDCAYAESVIRDHPI 161
Query: 170 --RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
P+ G E T LA ++ +Q HK IG++
Sbjct: 162 KGTIFFSPVFGS---EYTALASFVLTRHLPVTFQMQLHKIIGVK 202
>gi|285019180|ref|YP_003376891.1| organic radical activating enzyme protein [Xanthomonas albilineans
GPE PC73]
gi|283474398|emb|CBA16899.1| putative organic radical activating enzyme protein [Xanthomonas
albilineans]
Length = 225
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 15 RLKLTEIFLSLQGEADSAGWPTVFVRLTGCPL-----------RCSYCDTAYAFH---GG 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
+++D + + R+ +TGGEPL Q + L+Q+L G+++++ET+G
Sbjct: 61 QWWDIDAILAEVAR------HGVRHVCVTGGEPLAQKRCLQLLQSLCDTGYDVSLETSGA 114
Query: 122 IEPPQGID-------WICVSPKAGCDLKIKG------GQELKLV------FPQVNVSPEN 162
++ + + + + ++K V +
Sbjct: 115 LDIAEVDPRVSRVLDIKTPASHEAQRNRWENLTLLTARDQIKFVLCGRADYEWARALVAE 174
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P + LA R +Q HK +
Sbjct: 175 HQLQARCMVWFSP--SKSDLDARELADWIVADRLPVRFQMQLHKLL 218
>gi|289207754|ref|YP_003459820.1| radical SAM protein [Thioalkalivibrio sp. K90mix]
gi|288943385|gb|ADC71084.1| Radical SAM domain protein [Thioalkalivibrio sp. K90mix]
Length = 232
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 42/224 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E+F++LQGE +G F R +GC L +CR+CD+ + G
Sbjct: 24 RITEMFVSLQGEAADSGWPTAFVRLTGCPL-----------RCRWCDSAYAF---EGGEA 69
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+D + G+ R+ +TGGEPL Q L+ L G+ +++ET+G ++
Sbjct: 70 RALDSILA------WVGQTGVRHVCVTGGEPLAQPGCRELLARLCDDGYRVSLETSGALD 123
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFP------QVNVSPENYIGFDFE-------- 169
+ V + + L+ Q+ N FD+
Sbjct: 124 IGGLDARVTVVMDWKAPGSGEQDRNLEANIAHLAAGDQLKFVLANRADFDWACAELGRLD 183
Query: 170 -----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA + R +Q HK +
Sbjct: 184 LAPGVEVLFSPVFGELAPR--ELADWIVAERLAVRFQLQLHKLL 225
>gi|330975318|gb|EGH75384.1| radical SAM family protein [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 215
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 82/230 (35%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|226328670|ref|ZP_03804188.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198]
gi|225203403|gb|EEG85757.1| hypothetical protein PROPEN_02565 [Proteus penneri ATCC 35198]
Length = 152
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 25/153 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I E+F TLQGEG G A+F R GC + C +CDT + +
Sbjct: 1 MQYPINEVFQTLQGEGVFTGVPALFVRLQGCPV-----------GCSWCDTKHTWEKEDE 49
Query: 62 G---------GRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN 108
D + I + ++ V+TGGEP L PL + L
Sbjct: 50 KKVLLGDIPIKTQESDTWGEASVAQILSLFQQQGYSAKHVVITGGEPCLYDLRPLTEGLE 109
Query: 109 KRGFEIAVETNGTIEP-PQGIDWICVSPKAGCD 140
+ GF +ET+GT + W+ +SPK G
Sbjct: 110 QAGFACQIETSGTHDILCSEKTWVTLSPKVGMK 142
>gi|206889913|ref|YP_002249329.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741851|gb|ACI20908.1| radical activating enzyme [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 208
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 42/227 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF ++QGE AG VF R +GCNL +C +CDT + + G
Sbjct: 2 KVCEIFTSIQGESSLAGIPMVFVRLTGCNL-----------RCSYCDTKYAYYE---GEE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
+++++ + I +Y +TGGEPLLQ + + + + +ETNG+I
Sbjct: 48 LSINKVLEKIH------SFPFQYVEITGGEPLLQDETYKLINELVKSHNVLIETNGSIPI 101
Query: 125 PQGIDWICV-----SPKAGCDLKI--------KGGQELKLVFPQVNVSPE-----NYIGF 166
+ + + +P +G K K E+K V +
Sbjct: 102 EKVNPEVKIIMDIKTPGSGMSEKNYIENLRFLKKIDEVKFVLTNRDDYEWAKNFIKNHEI 161
Query: 167 DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI--GIR 211
P G LA RL++Q HK+I IR
Sbjct: 162 KANEILFSPAYGILNPA--ELAKWLINDGISVRLNLQIHKYIFGNIR 206
>gi|58581294|ref|YP_200310.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58425888|gb|AAW74925.1| radical activating enzyme [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 210
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 42/224 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 2 KITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCVYCDTAYAFH---GGEW 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE 123
+++D + + R+ +TGGEPL Q + +Q L G+++++ET+G ++
Sbjct: 48 HDIDDVLAEV------ATHGVRHVCVTGGEPLAQKRCLVLLQKLCDAGYDVSLETSGALD 101
Query: 124 PPQGID-------WICVSPKAGCDLKIKG------GQELKLVFPQVNVSP------ENYI 164
+ + + ++K V +
Sbjct: 102 VSAVDPRVSRVVDIKTPASGEEARNRWENLLLLTARDQIKFVICSRADYEWSREIVAAHA 161
Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P LA R +Q HK +
Sbjct: 162 LDRRCTVWFSPSKSEVGPR--QLADWIVADRLPVRFQMQLHKLL 203
>gi|330950598|gb|EGH50858.1| radical SAM family protein [Pseudomonas syringae Cit 7]
Length = 215
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 82/230 (35%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDSGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|325981315|ref|YP_004293717.1| Radical SAM domain-containing protein [Nitrosomonas sp. AL212]
gi|325530834|gb|ADZ25555.1| Radical SAM domain protein [Nitrosomonas sp. AL212]
Length = 219
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 77/227 (33%), Gaps = 42/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF +LQGE G VF R +GC L +C +CDT + G
Sbjct: 8 TTLRVNEIFFSLQGETSRVGLPTVFVRLTGCPL-----------RCGYCDTAYAFTGGEN 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
++ ++ + I + Y +TGGEPL Q + + AL + +++ET+G
Sbjct: 57 ---ISIAEILNRI------AHYKTNYITVTGGEPLAQKACLVLLTALCDAKYSVSLETSG 107
Query: 121 -------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFD 167
+ + +D + E+K V
Sbjct: 108 ALDLSQVDLRVCKVMDIKTPGSGEVTKNNWENLIHLTPKDEIKFVLCDEADYQWAREIIR 167
Query: 168 FERFSL------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ SL P+ LA R+ +Q HK +
Sbjct: 168 CKQLSLLCPILFSPVYDVLNPA--TLASWILRDELPVRMQLQMHKLL 212
>gi|28198799|ref|NP_779113.1| radical activating enzyme [Xylella fastidiosa Temecula1]
gi|182681498|ref|YP_001829658.1| radical SAM domain-containing protein [Xylella fastidiosa M23]
gi|28056890|gb|AAO28762.1| radical activating enzyme [Xylella fastidiosa Temecula1]
gi|182631608|gb|ACB92384.1| Radical SAM domain protein [Xylella fastidiosa M23]
gi|307579952|gb|ADN63921.1| radical SAM domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 217
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 82/225 (36%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIFL+LQGE G VF R +GC L +C++CDT + G
Sbjct: 8 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
++D + + + R+ +TGGEPL Q + L++ L GFE+++ET+G +
Sbjct: 54 WRSIDTIVNEV------RSYGVRHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 107
Query: 123 EPPQGIDWIC-----VSPKAGCDLKIKGG--------QELKLV------FPQVNVSPENY 163
+ + +P +G + ++K V + +
Sbjct: 108 DIAAVDSRVSRVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTCVAEH 167
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P T LA R +Q HK +
Sbjct: 168 ELERRCMVWFSPSKQDIAP--TLLADWIISDRLGVRFQLQLHKLL 210
>gi|317054935|ref|YP_004103402.1| Radical SAM domain-containing protein [Ruminococcus albus 7]
gi|315447204|gb|ADU20768.1| Radical SAM domain protein [Ruminococcus albus 7]
Length = 224
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + E F+++ GEG +AG +A+F RF+GCNL C +CDT +
Sbjct: 1 MGTLKLAENFVSINGEGRYAGELALFMRFAGCNLQ-----------CDWCDTKWANGADA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
QLA++ E+ LTGGEPLLQ D+ LI ALN RG ++ +ETN
Sbjct: 50 PFTEKTAVQLAEIAEDA--ADGYGLHRVTLTGGEPLLQKDIAELINALNDRGLDVEIETN 107
Query: 120 GTIEPPQGIDWICVSPKAGCDLK-----------------IKGGQELKLVFPQVNVSPEN 162
G++ + V P D K +K LK V
Sbjct: 108 GSVPIAPVAEICRVRPVFTMDYKLPSSGMESRMCIENLSQLKESDTLKFVCASKEDLKRA 167
Query: 163 YIGFD----FERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
D L P+ G ++ + + + K RL +Q HKFI
Sbjct: 168 VWVLDTYEPVCMVYLSPVFGRIEPKDM---VEFMKEKKLGKVRLQLQLHKFI 216
>gi|189219299|ref|YP_001939940.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4]
gi|189186157|gb|ACD83342.1| Organic radical activating enzyme [Methylacidiphilum infernorum V4]
Length = 233
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 46/226 (20%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ E+FL++QGE AG F R +GCNL +CR+CDT + + G
Sbjct: 23 VNEMFLSIQGESTFAGYPCAFIRLTGCNL-----------RCRWCDTTYAF---SGGKLM 68
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
+ + D ++ + +TGGEPLLQ + + L+ L G+E+ +ET+G++
Sbjct: 69 PIRAVIDQVKA------YDVPLVEITGGEPLLQKNSLYLLTLLCDLGYEVLLETSGSLPV 122
Query: 125 PQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPE--------NY 163
+ + C S + ELK V +
Sbjct: 123 DRVDSRVHRIVDLKCPSSGQSEHNLLSNLDWLGKRDELKFVIADRKDYEWAKNKLTQGKH 182
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
+ + P+ G E + L + + K RL +Q HK+I
Sbjct: 183 WRDKVKAITFSPVFG---EMDPQLLSQWILEDKLKVRLGLQIHKYI 225
>gi|302187148|ref|ZP_07263821.1| radical SAM family protein [Pseudomonas syringae pv. syringae 642]
Length = 215
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/230 (21%), Positives = 82/230 (35%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+ RY +TGGEPL Q + +P +++L G+E+++ET
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGEPLAQPNAIPFLKSLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|71275793|ref|ZP_00652077.1| Radical SAM [Xylella fastidiosa Dixon]
gi|71900392|ref|ZP_00682525.1| Radical SAM [Xylella fastidiosa Ann-1]
gi|170730227|ref|YP_001775660.1| radical activating enzyme [Xylella fastidiosa M12]
gi|71163371|gb|EAO13089.1| Radical SAM [Xylella fastidiosa Dixon]
gi|71729824|gb|EAO31922.1| Radical SAM [Xylella fastidiosa Ann-1]
gi|167965020|gb|ACA12030.1| radical activating enzyme [Xylella fastidiosa M12]
Length = 217
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIFL+LQGE G VF R +GC L +C++CDT + G
Sbjct: 8 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
++D + + + R+ +TGGEPL Q + L++ L GFE+++ET+G +
Sbjct: 54 WRSIDTIVNEV------RSYGVRHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 107
Query: 123 EPPQGIDWIC-----VSPKAGCDLKIKG--------GQELKLV------FPQVNVSPENY 163
+ + +P +G + ++K V + +
Sbjct: 108 DIAAVDSRVSRVVDIKTPGSGEAHRNHWPNLTLLTPHDQIKFVLCSRVDYEWARTCVAEH 167
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P T LA + R +Q HK +
Sbjct: 168 ELERRCMVWFSPSKQDIAP--TVLADWIISDRLEVRFQLQLHKLL 210
>gi|163815376|ref|ZP_02206751.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759]
gi|158449350|gb|EDP26345.1| hypothetical protein COPEUT_01541 [Coprococcus eutactus ATCC 27759]
Length = 222
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 46/234 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + E F+++ GE AG +AVF RF+GCNL G +CDT + G
Sbjct: 1 MSTYRVVERFISINGEAARAGELAVFIRFAGCNLNCG-----------YCDTKWANEPGV 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVET 118
D+L D + E + LTGGEPL+Q D+ + + +ET
Sbjct: 50 DYQELTEDELVDYVRRT------EVKNVTLTGGEPLIQKDIDKLLLAFALEDDIRVEIET 103
Query: 119 NGTIEPPQ----------GIDWICVSPKAGCDLKIKGGQELKL-------VFPQVNVSP- 160
NG+++ + +D+ C S D+ + + V Q ++
Sbjct: 104 NGSVDIAEFKALGGNVSYTLDYKCPSSGMESDMCLANYNYIDKNDSVKFVVGSQEDLEKC 163
Query: 161 ----ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
Y + R + P+ G + + + +N +L +Q HKFI
Sbjct: 164 LEIIREYALDERTRVFISPVYGSIDPAD---IVDFMIENGMNDVKLQLQLHKFI 214
>gi|262375547|ref|ZP_06068780.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Acinetobacter lwoffii SH145]
gi|262309801|gb|EEY90931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Acinetobacter lwoffii SH145]
Length = 236
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 51/234 (21%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE AG VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R ++D + T + + Y +TGGEPL Q + +PL+Q L G E+++ET+G +
Sbjct: 64 RQSLDDIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGAL 117
Query: 123 EPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ + I + ++K V N + E
Sbjct: 118 DVSKVDPRISKVLDLKTPTSGEVARNLLSNLDHLTAHDQIKFVIC--NREDYEWSKQQLE 175
Query: 170 RFSLQ---------PMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFI 208
++ LQ P +LA + R +Q HK +
Sbjct: 176 QYQLQDKVSTVWFSPAFSVEKGAVCLPPLARDLAQWILEDHLPVRFQLQLHKLL 229
>gi|330968882|gb|EGH68948.1| radical SAM family protein [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 215
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+ RY +TGGEPL Q + + L++ L G+E+++ET
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGEPLAQPNAIALLRRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|42521688|ref|NP_967068.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100]
gi|39574218|emb|CAE77722.1| radical activating enzyme [Bdellovibrio bacteriovorus HD100]
Length = 212
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 42/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EIF ++QGE + G VF R + CNL +C +CDT + +G
Sbjct: 1 MLKINEIFYSIQGETTYVGCPTVFVRLTACNL-----------RCTYCDTKYSYYEGE-- 47
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+ L +I E + +TGGEPLLQ +V ++ L +G+ +++ET+G+
Sbjct: 48 ----MQTLEAIIAEI---DSHKAPNVCITGGEPLLQKEVHTLMKTLCDKGYLVSLETSGS 100
Query: 122 IEPPQGIDWICV-------------SPKAGCDLKIKGGQELKLVFPQVNVSPENYI---- 164
+ + S E K V +
Sbjct: 101 KSVEMVDPRVKIILDVKTPDSGAADSFVMENIGFSTPSTEYKFVICSEKDFEWSEEFCRQ 160
Query: 165 GFDFERFSL--QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
FE+F + P G E LA +N RL +Q HK+I
Sbjct: 161 HNLFEKFVVLYSPSYGQVSERW--LAEKILQKNSSARLQLQLHKYI 204
>gi|146304722|ref|YP_001192038.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145702972|gb|ABP96114.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
Length = 210
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF ++QGEG G+ + F R +GCNL +C +CDT F I+
Sbjct: 1 MRYWIVEIFTSIQGEGLVIGKPSNFVRLAGCNL-----------RCVWCDTKFSWIREDG 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ +EE + ++ +TGGEPLLQ +PL L G+ +AVETNGT
Sbjct: 50 --------VPMELEEITGKLSRSVKWTTITGGEPLLQDILPLASTLKNLGYNVAVETNGT 101
Query: 122 IEPPQG----IDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPE----------NYI 164
I+P Q +D VSPK +G L+ ++ + V V P
Sbjct: 102 IKPKQELRKIVDVFSVSPKLSNSGHKLRYDFSEDWATYYKFVIVEPNRDLREVKNFVEEH 161
Query: 165 GFDFERFSLQPMDGPFLE--ENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211
D E+ +QP DG + + + +R+ Q H+ I R
Sbjct: 162 RIDPEKVIVQP-DGNRQDYIQALKELSDAVMELGLPFRVLPQLHRIISYR 210
>gi|312792432|ref|YP_004025355.1| Radical SAM domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179572|gb|ADQ39742.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 225
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 41/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++ E F++++GEG +G AVF RF+GCNL C +CDT++ + K
Sbjct: 13 KFNVVEKFVSIEGEGIRSGYPAVFVRFAGCNLS-----------CSWCDTNYA-TENPKY 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG- 120
+ ++D L I I + LTGGEPL+Q LI L GFE+ +ETNG
Sbjct: 61 EQIDIDTLLSFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGS 114
Query: 121 ------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLV---FPQVNVSPENYIG 165
+ +D+ C S + + LK V + + +
Sbjct: 115 VSIKHVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVGTYEDLKSAERIIKT 174
Query: 166 FDF-ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
F P+ G + + +N RL +Q HK I
Sbjct: 175 FKPRCNIFFSPVFGKIEPR---EIVKFLLENELFDARLQLQLHKII 217
>gi|302870906|ref|YP_003839542.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
gi|302573765|gb|ADL41556.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
Length = 224
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 41/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++ E F++++GEG +G AVF RF+GCNL C +CDT + + K
Sbjct: 12 KFNVVEKFVSIEGEGIRSGYPAVFVRFAGCNLS-----------CSWCDTKYA-TENPKY 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG- 120
+ ++D L + I I + LTGGEPL+Q LI L GFE+ +ETNG
Sbjct: 60 EQIDIDTLLNFIASTGI------KRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGS 113
Query: 121 ------TIEPPQGIDWICVSPKAGCDLKIKGGQEL--KLVFPQVNVSPENYIGFD----- 167
+ +D+ C S + + L K V V + E+ +
Sbjct: 114 VSIKCVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVATHEDLKSAERIIKT 173
Query: 168 ---FERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
P+ G + + +N R+ +Q HK I
Sbjct: 174 FNPKCNIFFSPVFGKIEP---AEIVKFLLENGLFDARVQLQLHKII 216
>gi|288559696|ref|YP_003423182.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE
[Methanobrevibacter ruminantium M1]
gi|288542406|gb|ADC46290.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE
[Methanobrevibacter ruminantium M1]
Length = 202
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 89/226 (39%), Gaps = 39/226 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + EIF + QGEG + G A F R GCNL C +CDTD +
Sbjct: 1 MIKIKVSEIFTSFQGEGPYIGTPATFLRLYGCNLN-----------CPWCDTDISTYE-- 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG--FEIAVET 118
+VD++ +++ Q R V+TGGEP L L + + + +I +ET
Sbjct: 48 ---ILSVDEVFEILMTQMEFNN--IRILVITGGEPTL-QMEELKRLIKEIPDEIKIQIET 101
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF------PQVNVSPENYIGFDF---E 169
NG+I +SPK + K + VF Q ++ Y+ + +
Sbjct: 102 NGSIFEYVPEIDYVISPKEDKETVFKNYYKYDNVFFKFVICSQEDIDEVIYLKDKYNYDK 161
Query: 170 RFSLQPMDGPFLEENTNLAISYCFQN----PKWRLSVQTHKFIGIR 211
LQ E +N +LSVQTHK++ R
Sbjct: 162 TIWLQGEFSKDGEMA-----DLIRENFPHLENVKLSVQTHKYLNQR 202
>gi|78188483|ref|YP_378821.1| radical activating enzyme, putative [Chlorobium chlorochromatii
CaD3]
gi|78170682|gb|ABB27778.1| radical activating enzyme, putative [Chlorobium chlorochromatii
CaD3]
Length = 226
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 79/239 (33%), Gaps = 63/239 (26%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF ++QGE AG F R +GC C +CDT + +G
Sbjct: 9 LRISEIFYSIQGEAFFAGFPCAFIRLAGC-----------GHGCNYCDTSYAEEKGE--- 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT- 121
+ A++I++ +TGGEPLLQ V PL++ L RG ++ +ET G
Sbjct: 55 ---LMAQAEIIKQAL---SYHAPIIEITGGEPLLQPAVYPLMEELCNRGEQVLLETGGFL 108
Query: 122 -IEPPQGIDWICVSPKAGCDLKIKGGQ------------------ELKLVFPQVNVSPEN 162
+E + KA + E K+V
Sbjct: 109 SVEKVDKRVHKIIDLKAPSSGVAEKNNPANIRLALEAAPEEQRRFEFKMVIANREDYEWA 168
Query: 163 YIGFDFERF-------------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +L P T LA RL +Q HK++
Sbjct: 169 KTLLEEHHIAAASTVTMGTVFGALSP---------TQLAEWILHDRLPVRLQLQLHKYL 218
>gi|66044666|ref|YP_234507.1| radical SAM family protein [Pseudomonas syringae pv. syringae
B728a]
gi|63255373|gb|AAY36469.1| Radical SAM [Pseudomonas syringae pv. syringae B728a]
Length = 215
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+ RY +TGGEPL Q + + L++ L G+E+++ET
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFS--ASHHELKGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|331007035|ref|ZP_08330269.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
IMCC1989]
gi|330419162|gb|EGG93594.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
IMCC1989]
Length = 218
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 43/224 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF ++QGE G+ VF R +GC L +C +CD+++ G
Sbjct: 8 LKITEIFFSIQGEAQTVGKPTVFVRLTGCPL-----------RCHYCDSEYAFY---GGE 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTI 122
R ++D + + Y +TGGEPL Q + + A + G ++++ET+G +
Sbjct: 54 RMSLDDIMAKVM------SYGATYVCVTGGEPLAQPEARTLLAQLCENGLQVSLETSGAL 107
Query: 123 EPPQGIDWICVSPKAGCDLKIKG-------------GQELKLVFPQVNVSPENYIGFDFE 169
+ V + ++K V +
Sbjct: 108 AIDNIDPRVSVVMDVKTPSSGEMSRNDYDNISLLRAEDQIKFVIGDRQDYEWSLFKVSEY 167
Query: 170 RF-------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
P+ L R +Q HK
Sbjct: 168 NLAGSVGEVLFSPIYEQLEPS--QLVEWILADRAPVRFQMQLHK 209
>gi|330936708|gb|EGH40896.1| radical SAM family protein [Pseudomonas syringae pv. pisi str.
1704B]
Length = 215
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 55/229 (24%), Positives = 87/229 (37%), Gaps = 42/229 (18%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+G ++ + K + + EL QV + +D+
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENM-ELLTANDQVKFVICSREDYDWAVS 159
Query: 172 SLQP------------MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
L + +LA N RL +Q HK +
Sbjct: 160 KLIQYGLDRRVGEVLFSASHHELKGHDLADWIVADNLPVRLQMQLHKIL 208
>gi|330896138|gb|EGH28359.1| radical SAM family protein [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 215
Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 44/230 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPF-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D+ RY +TGGEPL Q + + L++ L G+E+++ET
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLET 100
Query: 119 NGTIEPPQGIDWI-------CVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIG 165
+G ++ + K + + ++K V
Sbjct: 101 SGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK 160
Query: 166 F-------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 161 LIQYGLDRRAGEVLFSASHQEL--KGRDLADWIVADNLPVRLQMQLHKIL 208
>gi|15838492|ref|NP_299180.1| hypothetical protein XF1894 [Xylella fastidiosa 9a5c]
gi|9106987|gb|AAF84700.1|AE004009_7 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 227
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 49/225 (21%), Positives = 76/225 (33%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIFL+LQGE G VF R +GC L +C++CDT + G
Sbjct: 18 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTAYAFH---GGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
++D + + R+ +TGGEPL Q + L++ L GFE+++ET+G +
Sbjct: 64 WCSIDTIVSEV------RSYGVRHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGAL 117
Query: 123 EPPQGI-------DWICVSPKAGCDLKIKG------GQELKLV------FPQVNVSPENY 163
+ D ++K V + +
Sbjct: 118 DIAAVDLRVSRVVDIKTPGSGEAHRNHWPNLALLTPHDQIKFVLCSRADYEWARTCVAEH 177
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P T LA R +Q HK +
Sbjct: 178 ELERRCMVWFSPSKQDIAP--TVLADWIISDRLGVRFQLQLHKLL 220
>gi|282900250|ref|ZP_06308202.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii
CS-505]
gi|281194865|gb|EFA69810.1| hypothetical protein CRC_01639 [Cylindrospermopsis raciborskii
CS-505]
Length = 208
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 3 LYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I E F T+QGEG G + F R SGC L C +CDT + G
Sbjct: 7 KLPIHETFQSTVQGEGYWTGSLVDFIRLSGCPLS-----------CPWCDTGYA-DGGAN 54
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
R+ + +L+ E V++GGEP + +P L++AL G ++++ET+G
Sbjct: 55 LPRFE-RTIGELLAELK------SPRIVISGGEPFIHKHLPELVEALLGAGKQVSIETSG 107
Query: 121 -TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER--------- 170
+ WI +SPK + K + + + E +F +
Sbjct: 108 SFWKEVPLSAWITLSPKEHINPKYPVQNQFWSRANEAKIVIETGQEIEFYQEQLSAHPDL 167
Query: 171 -FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
LQP + + Q P ++LS+QTHK+IG++
Sbjct: 168 CVYLQPEWNSSSKSLDLILQLL-QQKPDYKLSLQTHKYIGLQ 208
>gi|258516745|ref|YP_003192967.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257780450|gb|ACV64344.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 211
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 79/222 (35%), Gaps = 38/222 (17%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF +LQGEG AG VF R +GCNL +C +CDT + +G
Sbjct: 2 KVNEIFYSLQGEGITAGYPTVFIRLTGCNL-----------RCLYCDTVYAY---EEGQE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT--- 121
+V +AD + E Y +TGGEPL Q + + + +ETNG+
Sbjct: 48 MSVKDVADRVHE------YGAHYVCITGGEPLQQKAELKLLLSLLNRYTVTIETNGSLSL 101
Query: 122 IEPPQGIDWICVSPKAGCDLKI-----------KGGQELKLVF---PQVNVSPENYIGFD 167
+ + K + E+K + + + +
Sbjct: 102 EDLSFNYCHFAMDIKTPGSGMHLYNDFSNIEFLRSKDEIKFIIGSRTDYDFARGIIEKYK 161
Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208
+ + F E LA R+ +Q HK+I
Sbjct: 162 LAQKVIVTFSPVFGLEPRFLAQWVLEDKLFFVRVQLQIHKYI 203
>gi|312134204|ref|YP_004001542.1| Radical SAM domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311774255|gb|ADQ03742.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
Length = 224
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++ E F++++GEG +G AVF RF+GCNL C +CDT + + K
Sbjct: 12 KFNVVEKFVSIEGEGIRSGYPAVFVRFAGCNLS-----------CSWCDTKYA-TENPKY 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG- 120
+ ++D L I + LTGGEPL+Q LI L GFE+ +ETNG
Sbjct: 60 EQIDIDTLLSFI------ASSGIKRVTLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGS 113
Query: 121 -TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSPENYIG 165
+I+ I + K LK V + + +
Sbjct: 114 VSIKHVPRNAIITMDYKCPSSGMEDRMIVDNIHFLGQKDVLKFVVGTYEDLKSAERIIKT 173
Query: 166 FDF-ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
F P+ G + + +N R+ +Q HK I
Sbjct: 174 FKPRCNIFFSPVFGKIEP---AEIVKFLLENGLFDARVQLQLHKII 216
>gi|268609642|ref|ZP_06143369.1| MoaA family Fe-S oxidoreductase [Ruminococcus flavefaciens FD-1]
Length = 225
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 90/233 (38%), Gaps = 41/233 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + + E F+++ GEG AG +A+F RF+GCNL +C +CDT + +
Sbjct: 1 MGTFRLAEHFVSINGEGRLAGELALFLRFTGCNL-----------RCDWCDTMWANEKDA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGFEIAVETN 119
N LA + ++ + E R LTGGEPLLQ D+P + G I +ETN
Sbjct: 50 PYTLMNTSSLAKIAQQAYE--EYGVRNVTLTGGEPLLQEDLPELCGRIAGLGLNIEIETN 107
Query: 120 GTIEPPQ------------GIDWICVSPKAGCDLKIKGGQELKLV---------FPQVNV 158
G + +D+ S K + + LK +N
Sbjct: 108 GAVPLEPFLSDKRTGRPVITMDYKLPSSKMEKHMCTDNFRYLKYFDTLKFVCGSLADLNR 167
Query: 159 SPENYIGFD-FERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ E + L P+ G + + + RL +Q HK I
Sbjct: 168 AAEIIEEYKPECMIYLSPVFGRIEP---AEMVEFMKERKLGNVRLQLQLHKMI 217
>gi|88604065|ref|YP_504243.1| radical SAM family protein [Methanospirillum hungatei JF-1]
gi|88189527|gb|ABD42524.1| Radical SAM [Methanospirillum hungatei JF-1]
Length = 234
Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 84/223 (37%), Gaps = 42/223 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF +LQGEG +G +F R +GCNL C +CDT G
Sbjct: 34 KIAEIFTSLQGEGLTSGYPTIFIRLAGCNLS-----------CSYCDTPASRQGGMD--- 79
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
+++++ + Y +TGGEPLLQ D L + L K G +++ETNGT+
Sbjct: 80 ---MNVSEVVAGALLQK---PHYVCITGGEPLLQKDEVAELARQLIKAGKMVSIETNGTV 133
Query: 123 EPPQGIDWICVSPKAGCD-----------LKIKGGQELKLVFPQVNVSPENYIGF----D 167
I + C +K +K V +
Sbjct: 134 PFDDLPSDISICMDVKCPSSGEFSNINLLSDLKSTDSVKFVVGTDDDLQYAEKVIMSHPT 193
Query: 168 FERFSLQPMDGPFLEENTNLAISYCF-QNPKWRLSVQTHKFIG 209
+ P+ G + SY +N R+ +Q HKFIG
Sbjct: 194 KAEIFISPIYGTDYQR----IASYILSRNLPARMQLQLHKFIG 232
>gi|50085673|ref|YP_047183.1| putative radical activating enzyme [Acinetobacter sp. ADP1]
gi|49531649|emb|CAG69361.1| putative radical activating enzyme [Acinetobacter sp. ADP1]
Length = 245
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 49/233 (21%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE AG VF R +GC L +C +CDT + G
Sbjct: 27 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGE 72
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R ++D++ + + Y +TGGEPL Q + + + L+ G ++++ET+GT+
Sbjct: 73 RLSLDEIIN------TALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTL 126
Query: 123 EPPQGIDWICVSPK---------------------AGCDLKIKGGQELKLVFPQVNVSPE 161
+ + + +K ++ + V
Sbjct: 127 DVSKVDPRVSKVLDLKTPTSGEEKRNLLSNLDYLTQHDQIKFVICNHEDYIWSKQQVVEY 186
Query: 162 NYIGFDFERFSLQPMDG------PFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + +LA + R +Q HK +
Sbjct: 187 QLEK-KVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLL 238
>gi|226952147|ref|ZP_03822611.1| radical activating enzyme [Acinetobacter sp. ATCC 27244]
gi|294651041|ref|ZP_06728380.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194]
gi|226837109|gb|EEH69492.1| radical activating enzyme [Acinetobacter sp. ATCC 27244]
gi|292823054|gb|EFF81918.1| radical activating enzyme [Acinetobacter haemolyticus ATCC 19194]
Length = 238
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 51/234 (21%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CDT + G
Sbjct: 20 LRITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 65
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++ + + + + Y +TGGEPL Q + + +Q L GF++++ET+G +
Sbjct: 66 RLSLEHIIE------TASQYKTPYICVTGGEPLAQPNCLILLQRLCDLGFQVSLETSGAL 119
Query: 123 EPPQGIDWI-------CVSPKAGCDL------KIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ + + + K + ++K V N + + E
Sbjct: 120 DVSKVDSRVSKVLDLKTPTSKEDHRNLLTNLDYLTQHDQIKFVIC--NRADYEWSRQQLE 177
Query: 170 RFSLQ---------PMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFI 208
+F LQ P +LA + R +Q HK +
Sbjct: 178 QFQLQDKVSTVWFSPAFAVEKGAVALPALARDLAQWILDDHLPVRFQLQLHKLL 231
>gi|312877003|ref|ZP_07736977.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
gi|311796234|gb|EFR12589.1| Radical SAM domain protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 225
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++ E F++++GEG +G AVF RF+GCNL C +CDT + + +
Sbjct: 13 KFNVVEKFVSIEGEGIRSGYPAVFVRFAGCNLN-----------CSWCDTRYAN-ENPQY 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG- 120
+ ++D L + I + LTGGEPL+Q LI L GFE+ +ETNG
Sbjct: 61 EQVDIDTLLNFI------SSTGIKRITLTGGEPLIQPYIYILIDRLIYEGFEVNIETNGS 114
Query: 121 ------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLV---FPQVNVSPENYIG 165
+ +D+ C S + + LK V + + +
Sbjct: 115 VSIKHVPRDAIITMDYKCPSSGMEDRMIVDNINFLGQKDVLKFVVGTYEDLKKAERIIKT 174
Query: 166 FDF-ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
F P+ G + + +N RL +Q HK I
Sbjct: 175 FKPRCNIFFSPVFGKIEPR---EIVKFLLENELFDARLQLQLHKII 217
>gi|71901732|ref|ZP_00683804.1| Radical SAM [Xylella fastidiosa Ann-1]
gi|71728504|gb|EAO30663.1| Radical SAM [Xylella fastidiosa Ann-1]
Length = 217
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/225 (21%), Positives = 81/225 (36%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIFL+LQGE G VF R +GC L +C++CDT + G
Sbjct: 8 LKISEIFLSLQGEANSVGWPTVFVRLTGCPL-----------RCQYCDTSYAFH---GGE 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
++D + + + R+ +TGGEPL Q + L++ L FE+++ET+G +
Sbjct: 54 WRSIDTIVNEVRR------YGVRHVCVTGGEPLAQKRCLLLLEKLCDADFEVSLETSGAL 107
Query: 123 EPPQGIDWIC-----VSPKAGCDLKIKGG--------QELKLV------FPQVNVSPENY 163
+ + +P +G + ++K V + +
Sbjct: 108 DIAAVDSRVSRVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTCVAEH 167
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P T LA R +Q HK +
Sbjct: 168 ELERRCMVWFSPSKQDIAP--TLLADWIISDRLGVRFQLQLHKLL 210
>gi|188996510|ref|YP_001930761.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931577|gb|ACD66207.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 220
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF +++GEG G VF R GCNL +C +CDT + G
Sbjct: 12 TFKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPYSYT----G 56
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
+ + ++D++EE + + +TGGEP ++ + + L + +++ +ETNGT
Sbjct: 57 ENFKLLSISDILEEI---KKYNLKRVCITGGEPFFTENLDILVGNLIENNYQVFIETNGT 113
Query: 122 IEPP------QGIDWICVSPKAGCDLKIKG----GQELKLVFPQV-----NVSPENYIGF 166
+ + +I SPK K E K V + + P+
Sbjct: 114 LWNQNFENLDKSKIYITCSPKPPFYFINKNLLPYISEFKFVVDETLDVKHIIRPDLTEYI 173
Query: 167 DFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ LQP + + L + R+ Q HK +G
Sbjct: 174 KNDVIVLQPESNKPEMVNKALKLQDELLKFGIESRIIPQCHKVLG 218
>gi|303242851|ref|ZP_07329315.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302589597|gb|EFL59381.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 209
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 44/223 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIFL++QGE G +F RF+GCNL +C +CDT + G
Sbjct: 3 VNEIFLSIQGESISTGFPTIFVRFTGCNL-----------RCCYCDTTYAYED---GKEM 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP- 124
+ ++ + ++ + +TGGEPLLQ D+ + + + +ETNG +
Sbjct: 49 SPYEVFEEVKR------FHYKRVCITGGEPLLQKDLNEL-LRLLGDYAVTIETNGAVPIE 101
Query: 125 ----PQGIDWI----CVSPKAGCDL------KIKGGQELKLVFPQVNVSPENYIGFDFER 170
+G W+ S + ++ E+K V N
Sbjct: 102 DITLCEGHSWVMDMKVPSSGCSNQMVLDNFRYLRDKDEIKFVIGDRNDYDWAKGIIKNHH 161
Query: 171 FS----LQPMDGPFLEENTNLAISYCF-QNPKWRLSVQTHKFI 208
+ P+ G N A+S+ R VQ HK I
Sbjct: 162 YKGTITFSPVYGRI---NCEDAVSWILADRLDVRFQVQLHKII 201
>gi|146295178|ref|YP_001178949.1| radical SAM domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145408754|gb|ABP65758.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 217
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 43/230 (18%)
Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
MK + + E F++++GEG +G A+F RF+GCNL C +CDT + Q
Sbjct: 1 MKKAKFKVVEKFVSIEGEGIRSGFPAIFLRFAGCNLN-----------CSYCDTRYA-TQ 48
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117
+DQ+ + + + LTGGEPL+Q + LI +L K GFE+ +E
Sbjct: 49 NPDYEEITLDQILEYVNSI------GFKRVTLTGGEPLIQPHIHDLIDSLIKEGFEVNIE 102
Query: 118 TNGTIEP-------PQGIDWICVSPKAGCDLKIKG------GQELKLVF---PQVNVSPE 161
TNG+++ +D+ C S + ++ LK V + + E
Sbjct: 103 TNGSVDIRYVNRNAIITMDYKCPSSGMEDKMLLENIKYLGKSDVLKFVVGTNQDLERAFE 162
Query: 162 NYIGFDF-ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
F+ P+ G + +S+ + RL +Q HK I
Sbjct: 163 IIRLFEPSCNIYFSPVHGKIEPK---EIVSFILSHKLQNCRLQLQLHKII 209
>gi|262373096|ref|ZP_06066375.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Acinetobacter junii SH205]
gi|262313121|gb|EEY94206.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Acinetobacter junii SH205]
Length = 236
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 51/234 (21%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANTFGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++ + + + + Y +TGGEPL Q + + +Q L GF++++ET+G +
Sbjct: 64 RQSLEHIIE------TASQFKTPYICVTGGEPLAQPNCLVLLQRLCDLGFDVSLETSGAL 117
Query: 123 EPPQGIDWIC-----VSPKAGCDLKI--------KGGQELKLVFPQVNVSPENYIGFDFE 169
+ + + +P + D + ++K V N + + E
Sbjct: 118 DVSKVDPRVSKVLDLKTPTSNEDHRNLLTNLDYLTQHDQIKFVIC--NRADYEWSKQQLE 175
Query: 170 RFSLQ---------PMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFI 208
F LQ P +LA + R +Q HK +
Sbjct: 176 NFQLQDKVSTVWFSPAFAVEKGAVALPALARDLAQWILDDHLPVRFQLQLHKLL 229
>gi|260437277|ref|ZP_05791093.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
gi|292810587|gb|EFF69792.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
Length = 222
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 46/234 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + E F+++ GEG AG +A F R GCNL C +CDT +
Sbjct: 1 MAEYKVVETFVSINGEGRKAGELAFFLRLKGCNLD-----------CSYCDTKWANKGDA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG--FEIAVET 118
+ +++ LI+ + R +TGGEPL + D+ ++ L + +ET
Sbjct: 50 SFEIMDENEIYGLIK------KSGIRNVTITGGEPLFRKDMAILLELLDNDRELSVEIET 103
Query: 119 NGT---IEPPQGIDWICVSPK-------------AGCDLKIKGGQELKLV---FPQVNVS 159
NG+ I + G ++ +K V + +
Sbjct: 104 NGSVDLKPYLPVCKNISFTMDYKLPTSRMEEQMCLGNFEILRNIDTVKFVSGSIKDLEKA 163
Query: 160 PENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
E +D + + P+ G + + + + K RL +Q HKFI
Sbjct: 164 EEIIQKYDLCKRTKVYISPVFGNIDPAD---IVEFMKERKMNKVRLQLQLHKFI 214
>gi|167757163|ref|ZP_02429290.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402]
gi|167703338|gb|EDS17917.1| hypothetical protein CLORAM_02713 [Clostridium ramosum DSM 1402]
Length = 220
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 86/232 (37%), Gaps = 44/232 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + E F+++ GEG AG++A F RF CNL C +CDT + +
Sbjct: 1 MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNLN-----------CSYCDTRYANDSNS 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
+ + D ++ + LTGGEPLLQ ++ I L K GF + +ETN
Sbjct: 50 NYELLSAQNILDYLKANKVVN------VTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103
Query: 120 GTIEPPQ----GIDWICVSPKA-----------GCDLKIKGGQELKLV---FPQVNVSPE 161
G+I+ + K + +K V +N + E
Sbjct: 104 GSIDIKPFIKETRPIFTLDYKVPSSTMENEMCLNNYQYLTKNDVVKFVVSNLSDLNKAKE 163
Query: 162 NYIGFDF---ERFSLQPMDGPFLEENTNLAISY-CFQNPK-WRLSVQTHKFI 208
+D + P+ G + Y + + +Q HKFI
Sbjct: 164 IIDTYDLVNRTKVYFSPVFGKIEPRM---IVDYMVKHHLNGINMQLQMHKFI 212
>gi|260551478|ref|ZP_05825662.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624]
gi|260405472|gb|EEW98965.1| radical SAM superfamily protein [Acinetobacter sp. RUH2624]
Length = 236
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 51/234 (21%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++ + + E + + Y +TGGEPL Q + + +Q L GF++++ET+G +
Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117
Query: 123 EPPQGIDWIC-----VSPKAGCDLKI--------KGGQELKLVFPQVNVSPENYIGFDFE 169
+ + + +P +G + + ++K V N + E
Sbjct: 118 DVSKVDPRVSKVLDLKTPTSGEEHRNLISNLDYLTSHDQIKFVIC--NREDYEWSKQQVE 175
Query: 170 RFSLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
++ LQ P +LA R +Q HK +
Sbjct: 176 QYQLQNKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229
>gi|288818575|ref|YP_003432923.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
gi|288787975|dbj|BAI69722.1| radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
gi|308752166|gb|ADO45649.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
Length = 218
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 93/228 (40%), Gaps = 37/228 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
SI EI+ ++QGEG G+ +F RF GCNL +C +CD
Sbjct: 10 TALSINEIYPSVQGEGLLIGKPCLFVRFQGCNL-----------RCPWCD-----EPSAL 53
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
+ L +L++E + ++ VLTGGEP + ++ L+Q L RG+ + +ETNG
Sbjct: 54 SFKRANTDLKELLQELQ---KYPQKHVVLTGGEPFAEPNLHLLVQELLCRGYSVQIETNG 110
Query: 121 TIEPPQ-----GIDWICVSPKAGCDLKIKG-----GQELKLVFP-----QVNVSPENYIG 165
T+ I SPK D + +ELK V V E
Sbjct: 111 TLWNENLREVVSQVHITCSPKGVADWYVHPAVLSSAKELKFVVDHELCYNVIKRREFMPF 170
Query: 166 FDFERFSLQPMDG--PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
+ LQP FL++ L + R+ Q HK IG++
Sbjct: 171 LEEGLVVLQPEGNKTKFLQKALELQNLLLREGYTVRVVPQMHKLIGLK 218
>gi|223938514|ref|ZP_03630406.1| Radical SAM domain protein [bacterium Ellin514]
gi|223892776|gb|EEF59245.1| Radical SAM domain protein [bacterium Ellin514]
Length = 244
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 88/241 (36%), Gaps = 49/241 (20%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EI+L+LQGE AG +F R + CNL +C +CDT + +G K G
Sbjct: 7 VNEIYLSLQGESTFAGLPCIFVRLTACNL-----------RCSYCDTAYAFTEGAKQGMA 55
Query: 66 N-VDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
+ ++ L G + LTGGEPLLQ + +PL++ L GF + +ET+G
Sbjct: 56 EMLAEIRTLAASYSQTVGGHKMPLIELTGGEPLLQPNSLPLMKTLCDEGFTVLIETSGAH 115
Query: 123 EPPQGIDWI-------CVSPKAGCDLKI------KGGQELKLVF---PQVNVSPENYIGF 166
+ + + C S + K E+K V + + +
Sbjct: 116 DISKIDSRVRRIMDLKCPSSGEVLRNRRENLRYLKNSDEIKFVIGTEQDYEWAKQQIVEH 175
Query: 167 DFERFS------LQPMDGPFLEEN-------------TNLAISYCFQNPKWRLSVQTHKF 207
+ +QP+ ++ L R +Q HK
Sbjct: 176 KLDAICPLLFSWVQPLTPEQQDKALKKVPAGQTPITRLQLVERIIADALPVRFQLQMHKI 235
Query: 208 I 208
I
Sbjct: 236 I 236
>gi|237755689|ref|ZP_04584298.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692139|gb|EEP61138.1| radical SAM domain protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 217
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 36/225 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF +++GEG G VF R GCNL +C +CDT + G
Sbjct: 9 TFKVVEIFRSVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTPYSYT-GENF 56
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
++ + D I+ + + +TGGEP ++ + ++ L + +++ +ETNGT
Sbjct: 57 KLLSITDILDEIK------KYNLKRVCITGGEPFFTENLDVLVENLIENSYQVFIETNGT 110
Query: 122 IEPP------QGIDWICVSPKAGCDLKIKG----GQELKLVFPQVNVSPENYIG-----F 166
+ + +I SPK K E K V +
Sbjct: 111 LWNQNFENLDKSKIYITCSPKPPFYFINKNLLPYVSEFKFVVDETLSIKHIIRSDLIEYI 170
Query: 167 DFERFSLQPMDGP--FLEENTNLAISYCFQNPKWRLSVQTHKFIG 209
+ LQP +++ L + R+ Q HK +G
Sbjct: 171 KNDTIVLQPESNKPEMVKKALELQDELLKFGIESRIIPQCHKVLG 215
>gi|320539607|ref|ZP_08039271.1| putative conserved protein [Serratia symbiotica str. Tucson]
gi|320030219|gb|EFW12234.1| putative conserved protein [Serratia symbiotica str. Tucson]
Length = 250
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 46/202 (22%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-------- 61
F TLQGEG G A+F R GC + C +CDT +
Sbjct: 63 FQTLQGEGFFTGVPAIFIRLQGCPV-----------GCSWCDTKHTWDKEVNREVDMQRI 111
Query: 62 ---------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
G + +QL ++ +Q R+ V+TGGEP + VPL L ++G+
Sbjct: 112 LVKTEESATWGSASAEQLLAVMRQQG----YTARHVVITGGEPCIYDLVPLTALLEQQGY 167
Query: 113 EIAVETNGTIEPPQG-IDWICVSPKAGC-------DLKIKGGQELKLVFPQ------VNV 158
+ET+GT E W+ VSPK D ++ E+K + ++
Sbjct: 168 GCQIETSGTYEIRCSVKTWVTVSPKVNMRGGMKVLDQALQRADEVKHPVARERDIEALDA 227
Query: 159 SPENYIGFDFERFSLQPMDGPF 180
+LQP+
Sbjct: 228 LLATLHDKKPRIIALQPISKKE 249
>gi|124486430|ref|YP_001031046.1| hypothetical protein Mlab_1617 [Methanocorpusculum labreanum Z]
gi|124363971|gb|ABN07779.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
Length = 202
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 42/225 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F++LQGEG G F R SGCNL +C +CDT++ +GT
Sbjct: 2 RVTETFVSLQGEGERQGMPCFFLRLSGCNL-----------RCAWCDTEYSFEKGTD--- 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
+VD+L I + Y +TGGEPLLQ +PL++ L + +ETNGTI
Sbjct: 48 RSVDELVKEI------ADSGLSYVCVTGGEPLLQKEELIPLLEILAAADIHVDIETNGTI 101
Query: 123 EPPQ-------GIDWICVSPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFER- 170
+D C S DL + +K V +
Sbjct: 102 PFDDVSAYASICMDVKCPSSGEMSDLSLLSALTENDCVKFVIGDEADYLYMVEVLAAHKP 161
Query: 171 ---FSLQPMDGPFLEENTNLAISYCF-QNPKWRLSVQTHKFIGIR 211
+ P+ G +T + + R +Q HK + ++
Sbjct: 162 KAPVCITPVFG----TDTKWLVETIIAERLPVRFQLQLHKVVNVQ 202
>gi|261417330|ref|YP_003251013.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373786|gb|ACX76531.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325710|gb|ADL24911.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 224
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 45/231 (19%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF +++GEG G+ AVF R GCNL +C +CD+ + ++G +
Sbjct: 2 KVCEIFKSIEGEGIRMGQAAVFVRLHGCNL-----------RCSYCDSMYA-VEGPDFKQ 49
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
+V ++ +E E + LTGGEPL+ V L+ A + GFE+ +ETNGT+
Sbjct: 50 MSVGEVLAAVE--MYRNESGVKCVTLTGGEPLIHEGVGELLTAFSDAGFEVNIETNGTVP 107
Query: 124 PPQ-------GIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGF---- 166
+DW C S +K++ LK V V E
Sbjct: 108 CKWQLPGLFYTMDWKCKSSGMSARMKMENIISLGKNDVLKFVVGSVEDLQEAEGVVARLS 167
Query: 167 -----DFERFSLQPMDGPFLEENTNLAISY-----CFQNPKWRLSVQTHKF 207
+ + P+ G E +++ R VQ HK
Sbjct: 168 LTSPDNMPHIFISPVWGELTNE---QIVNWMVGSKVMTQNNARFQVQLHKI 215
>gi|225850855|ref|YP_002731089.1| radical SAM domain protein [Persephonella marina EX-H1]
gi|225645393|gb|ACO03579.1| radical SAM domain protein [Persephonella marina EX-H1]
Length = 214
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M+ +++ EIF +++GEG G F R GCNL +C +CDT + G
Sbjct: 1 MEKFNVVEIFPSIEGEGSLIGYPVTFIRLEGCNL-----------RCEWCDTPY-SYDGK 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
+ D++ ++ R LTGGEPL+ + L+ + K G+ + +ETN
Sbjct: 49 TFSKLTSDEIISELKR------YPNRKVCLTGGEPLICENVDKLMTEIIKEGYSLIIETN 102
Query: 120 GTI---------EPPQGIDWICVSPKAG-----CDLKIKGGQELKLVFPQ----VNVSPE 161
GT+ +I VSPK I E K + + ++
Sbjct: 103 GTVLTEEVKNVLREFGESIYIVVSPKPDSFYFINKELIPSVDEFKFIVDETLRIKDILMY 162
Query: 162 NYIGFDFERFSLQPMDG--PFLEENTNLAISYCFQN-PKWRLSVQTHKFIGI 210
+ + LQP +++ L ++ + R+ Q HK++GI
Sbjct: 163 QIY-YTEKPLILQPESNRKDMIDKALKLQRELLEKHSIEARVIPQVHKYMGI 213
>gi|184159135|ref|YP_001847474.1| organic radical activating protein [Acinetobacter baumannii ACICU]
gi|213158261|ref|YP_002320312.1| radical SAM domain protein [Acinetobacter baumannii AB0057]
gi|215482627|ref|YP_002324819.1| Radical SAM superfamily protein [Acinetobacter baumannii
AB307-0294]
gi|239501047|ref|ZP_04660357.1| Radical SAM superfamily protein [Acinetobacter baumannii AB900]
gi|294836636|ref|ZP_06781319.1| Radical SAM superfamily protein [Acinetobacter sp. 6013113]
gi|294841429|ref|ZP_06786112.1| Radical SAM superfamily protein [Acinetobacter sp. 6014059]
gi|294860793|ref|ZP_06798562.1| Radical SAM superfamily protein [Acinetobacter sp. 6013150]
gi|301346460|ref|ZP_07227201.1| Radical SAM superfamily protein [Acinetobacter baumannii AB056]
gi|301512446|ref|ZP_07237683.1| Radical SAM superfamily protein [Acinetobacter baumannii AB058]
gi|301594745|ref|ZP_07239753.1| Radical SAM superfamily protein [Acinetobacter baumannii AB059]
gi|56131240|gb|AAV80241.1| putative organic radical activating enzyme [Acinetobacter
baumannii]
gi|183210729|gb|ACC58127.1| Organic radical activating enzyme [Acinetobacter baumannii ACICU]
gi|213057421|gb|ACJ42323.1| radical SAM domain protein [Acinetobacter baumannii AB0057]
gi|213988552|gb|ACJ58851.1| Radical SAM superfamily protein [Acinetobacter baumannii
AB307-0294]
gi|322509049|gb|ADX04503.1| organic radical activating protein [Acinetobacter baumannii 1656-2]
gi|323519031|gb|ADX93412.1| organic radical activating protein [Acinetobacter baumannii
TCDC-AB0715]
Length = 236
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++ + + E + + Y +TGGEPL Q + + +Q L GF++++ET+G +
Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117
Query: 123 EPPQGIDWIC----VSPKAGCDLKIKGGQELKLVFPQVNV-------SPENYIGFDFERF 171
+ + + + + L + P+ + + E++
Sbjct: 118 DVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSKQQVEQY 177
Query: 172 SLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
LQ P +LA R +Q HK +
Sbjct: 178 QLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229
>gi|281358520|ref|ZP_06245000.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
gi|281315002|gb|EFA99035.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
Length = 214
Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 41/225 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E FL+LQGE HAGR +F R +GCNL C +CDT + G
Sbjct: 3 RLVEAFLSLQGESTHAGRRCIFLRLAGCNLD-----------CNYCDTMYA-HSPESGEE 50
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+VD+L R +TGGEPLL + P L + L GFE+ +ETNG++
Sbjct: 51 RSVDELVAA------AASFPCRLVEITGGEPLLTPETPELCRRLLALGFEVLIETNGSLP 104
Query: 124 PPQGIDWI-----CVSPKAGCDLKI--------KGGQELKLVF---PQVNVSPENYIGFD 167
+ C P +G + + E+K V + + + +D
Sbjct: 105 IAPLPAEVRKILDCKLPGSGMSNRNLYDNYALLQPHDEVKFVVSSREDFDFALDVIRRYD 164
Query: 168 F----ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G + LA R+ +Q HK I
Sbjct: 165 LPGKTANLLFSPVWGRVGFAD--LARWIVDAGAPGRMQLQLHKLI 207
>gi|116619443|ref|YP_821599.1| radical SAM domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116222605|gb|ABJ81314.1| Radical SAM domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 224
Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 52/233 (22%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E+F ++QGEG G +VF R SGCNL +C +CDT + + +G
Sbjct: 2 KIAELFYSIQGEGALLGVPSVFIRTSGCNL-----------RCSWCDTPYTSWRP-EGTD 49
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
++Q+ D + G R+ V+TGGEP++ D+ L Q L R I +ET GT+
Sbjct: 50 LTLEQILDEV------GAHPARHVVVTGGEPMIAPDIVALTQRLRARNLHITIETAGTVF 103
Query: 124 PPQGIDWICVSPKAGC-----------------------DLKIKGGQELKLVFPQVNVSP 160
P D + +SPK +L + +LK V Q
Sbjct: 104 EPVACDLMSISPKLANSTPDDARFSRQHERLRIQTPVLAELMARYPYQLKFVISQPGDLE 163
Query: 161 E-----NYIGFDFERFSLQPMDGPFLEENTNLAIS---YCFQNPKWRLSVQTH 205
E + D ER L P +G A+ C + +R S + H
Sbjct: 164 EARSLVETLQADRERVILMP-EGVDPARLRERALWLAEICKE-EGFRFSPRLH 214
>gi|237737359|ref|ZP_04567840.1| radical SAM domain-containing protein [Fusobacterium mortiferum
ATCC 9817]
gi|229421221|gb|EEO36268.1| radical SAM domain-containing protein [Fusobacterium mortiferum
ATCC 9817]
Length = 222
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 81/234 (34%), Gaps = 46/234 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + + EIF ++ GEG G++A+F R CNL C +CDT +
Sbjct: 1 MANFKVVEIFESINGEGRRVGQLAIFIRLQKCNLN-----------CSYCDTRWANGDDA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVET 118
+ D++ D I + + LTGGEPLL DV + + + +ET
Sbjct: 50 PYTLMSEDKIYDRIL------KSGIKNITLTGGEPLLHKDVEILLEKIGENPNLSLEIET 103
Query: 119 NGT----------IEPPQGIDWICVSPKAGCDLKIKGG------QELKLV------FPQV 156
NG+ P +D+ S K + + +K V +
Sbjct: 104 NGSIELEKFSKLKNPPLFTMDYKLPSSKMENKMCLDNFKYLTLKDTVKFVVGTIEDLKKA 163
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E Y P+ + + +N L +Q HKFI
Sbjct: 164 KEIIERYSLIGKCAVYFSPVFNSIDPI---EIVKFMKENRLNGVNLQLQIHKFI 214
>gi|323212709|gb|EFZ97526.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
Length = 121
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 55/136 (40%), Gaps = 32/136 (23%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---- 57
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDKLSD 49
Query: 58 -------------QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+ K G + + L +I Q R+ V+TGGEP + +PL
Sbjct: 50 REVSLFSILAKTKESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLT 105
Query: 105 QALNKRGFEIAVETNG 120
L K GF +ET+G
Sbjct: 106 DLLEKSGFSCQIETSG 121
>gi|118443804|ref|YP_878458.1| MoaA family Fe-S oxidoreductase [Clostridium novyi NT]
gi|118134260|gb|ABK61304.1| Fe-S oxidoreductase of MoaA family CAC3625 [Clostridium novyi NT]
Length = 222
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 47/234 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E F+++ GEG +G+++VF RF+GCNL C +CDT + +
Sbjct: 1 MNYKVVEKFISINGEGKSSGQLSVFIRFAGCNLN-----------CSYCDTKWANEEKAP 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
++ + I+ E + LTGGEPLLQ L + I +ETN
Sbjct: 50 YSIMTEKEIYEYIK------LTEIKNVTLTGGEPLLQEGILTLLKLLCSDENLNIEIETN 103
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIK-----------------GGQELKLVFPQVNVS--- 159
G+I PK D K+ +K V N
Sbjct: 104 GSIPLKDFTSIKNNPPKFTMDYKLPYSNMENHMITDNFNYLTKKDVIKFVVANKNDLQKL 163
Query: 160 ---PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
Y D + P+ G E N + + +N L +Q HK I
Sbjct: 164 KSIIYKYNLIDKTNIYISPVYG---EIEMNSIVEFMKENKLNGVTLQMQLHKII 214
>gi|156937024|ref|YP_001434820.1| radical SAM domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156566008|gb|ABU81413.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
Length = 218
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 47/235 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + + E FL++QGEG G A F R + CNL +C +CDT + +
Sbjct: 1 MSEFEVIEEFLSIQGEGSLVGTPAYFVRLARCNL-----------RCPWCDTKYSW---S 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFE--IAV 116
G + V ++A+ E VLTGGEPLL ++ L ++GF+ + +
Sbjct: 47 PGLKVPVSEVAERALE------SGVGLIVLTGGEPLLWQLEIRSFLKELEEKGFKGLVQI 100
Query: 117 ETNGTIEPP---QGIDWICVSPKAGCDLKIKGGQ-----------ELKLVFPQVNVS--- 159
ETNGTI P WI VSPK CD I ELKLV + +++
Sbjct: 101 ETNGTIYPSALEGHEIWITVSPKVTCDYYINFPSTVRRILENFSGELKLVVRRTDLTCVK 160
Query: 160 -PENYIGFDFERFSLQPMD--GPFLEENTNLAISYCFQNP---KWRLSVQTHKFI 208
+G LQP+D + L + + + R+ Q HK +
Sbjct: 161 KFLEELGDVPRPVVLQPLDEGEGYASAARELVLEVLKDDYLKRRVRVVPQVHKLL 215
>gi|194334507|ref|YP_002016367.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
DSM 271]
gi|194312325|gb|ACF46720.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
Length = 222
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 83/232 (35%), Gaps = 45/232 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIFL++QGE AG VF R +GC S++C +CDT + T
Sbjct: 3 RTLLINEIFLSIQGESSRAGYPCVFVRLTGC-----------SSRCTWCDTRYA---MTN 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
G ++ + D I + +TGGEPL + PL+Q L RG+ + +ET G
Sbjct: 49 GTTTSLQNIIDTI------AGFKTPLVEITGGEPLEQENVYPLMQQLCNRGYNVMLETGG 102
Query: 121 TIEPP--QGIDWICVSPKAGCDLKIKGGQE-----------LKLVFPQVNVSPENYIGFD 167
+ K E + + + ++
Sbjct: 103 FHPVSRVDHRVHKIIDLKPPSSGSSSNNHETNIRIALKAPPAEQALFEFKIVIAGKEDYE 162
Query: 168 FERFSLQ----------PMDGPFLEENTN-LAISYCFQNPKWRLSVQTHKFI 208
+ LQ M F E + LA + R+ +Q HK+I
Sbjct: 163 WATRLLQRTRINEHCPVVMGTVFSELSPAILASWILKDHLNVRMQLQLHKYI 214
>gi|293609845|ref|ZP_06692147.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828297|gb|EFF86660.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325123071|gb|ADY82594.1| queuosine biosynthesis protein QueE [Acinetobacter calcoaceticus
PHEA-2]
Length = 236
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++++ + + + + Y +TGGEPL Q + + +Q L + GF++++ET+G +
Sbjct: 64 RFSLEHIIETATQ------FQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117
Query: 123 EPPQGIDWIC----VSPKAGCDLKIKGGQELKLVFPQVNV-------SPENYIGFDFERF 171
+ + + + + L + P+ + + E++
Sbjct: 118 DVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSKQQVEKY 177
Query: 172 SLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
LQ P +LA R +Q HK +
Sbjct: 178 QLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229
>gi|237735749|ref|ZP_04566230.1| radical SAM-superfamily protein [Mollicutes bacterium D7]
gi|229381494|gb|EEO31585.1| radical SAM-superfamily protein [Coprobacillus sp. D7]
Length = 220
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 86/232 (37%), Gaps = 44/232 (18%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + E F+++ GEG AG++A F RF CNL C +CDT + +
Sbjct: 1 MNNYKVVEKFISINGEGSRAGQLAAFIRFHYCNLN-----------CSYCDTRYANDSNS 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETN 119
+ + D ++ + LTGGEPLLQ ++ I L K GF + +ETN
Sbjct: 50 NYELLSAQNILDYLKTNKVVN------VTLTGGEPLLQQNIDYLIDLLLKNGFSVEIETN 103
Query: 120 GTIEPPQ----GIDWICVSPKA-----------GCDLKIKGGQELKLV---FPQVNVSPE 161
G+I+ + K + +K V +N + E
Sbjct: 104 GSIDIKPFIKETRPIFTLDYKVPSSTMENEMCLNNYQYLTKNDVVKFVVSNLSDLNKAKE 163
Query: 162 NYIGFDF---ERFSLQPMDGPFLEENTNLAISY-CFQNPK-WRLSVQTHKFI 208
+D + P+ G + Y + + +Q HKFI
Sbjct: 164 IIDTYDLVNRTKVYFSPVFGKIEPRM---IVDYMVKHHLNGINMQLQMHKFI 212
>gi|329121407|ref|ZP_08250032.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
gi|327469697|gb|EGF15164.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
Length = 226
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 43/226 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF +++GEG G +A+F R + CNL +C +CDT +
Sbjct: 13 IVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKEIL 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ +L + I + TGGEP+L + + L K G+EI +ET+G+I
Sbjct: 62 SEKELIEKIH------SYPWKKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSIPLF 115
Query: 126 QGID---WICVSPK-----------AGCDLKIKGGQELKLVF-------PQVNVSPENYI 164
+ + K K+ LK V + Y
Sbjct: 116 DKRPPNLFYTMDFKCTGSGMKQHMIEENFEKLNKDDVLKFVVGDLTDLGDMRKIIKIKYN 175
Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ RF + P+ G ++Y + + VQ HK I
Sbjct: 176 NAEQPRFYVSPVWGKIKP---VELVNYVKDHKMTNVCVQVQLHKII 218
>gi|260556563|ref|ZP_05828781.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
baumannii ATCC 19606]
gi|260409822|gb|EEX03122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
baumannii ATCC 19606]
Length = 236
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++ + + E + + Y +TGGEPL Q + + +Q L GF++++ET+G +
Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQGLCDAGFDVSLETSGAL 117
Query: 123 EPPQGIDWIC----VSPKAGCDLKIKGGQELKLVFPQVNV-------SPENYIGFDFERF 171
+ + + + + L + P+ + + E++
Sbjct: 118 DVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSKQQVEQY 177
Query: 172 SLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
LQ P +LA R +Q HK +
Sbjct: 178 QLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229
>gi|160893109|ref|ZP_02073897.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50]
gi|156865192|gb|EDO58623.1| hypothetical protein CLOL250_00655 [Clostridium sp. L2-50]
Length = 222
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 46/234 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M + + E F+++ GE AG +AVF RF+GCNL C +CDT +
Sbjct: 1 MAKFKVAERFVSINGESVKAGELAVFIRFTGCNLN-----------CSYCDTKWANEADA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVET 118
+++ D I+ R LTGGEPL+Q D+ + ++ VET
Sbjct: 50 PYEELTDEEIYDYIKRT------GVRNVTLTGGEPLIQKDIDKLLLMLAMDEELQVEVET 103
Query: 119 NGTIEPPQ-----GIDWICVSPKA-----------GCDLKIKGGQELKLV------FPQV 156
NG+++ + + K I +K V
Sbjct: 104 NGSVDIAEFKALTDRVAFTLDYKLPGSGMESNMCFSNYNYIDKKDAVKFVSGSIKDLETA 163
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + P+ G E+ + + +N +L +Q HK+I
Sbjct: 164 RDIIHEWALDIKSNVYISPVYGKINPED---IVDFMIENEMNGVKLQLQLHKYI 214
>gi|313906547|ref|ZP_07839877.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
gi|313468616|gb|EFR63988.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
Length = 218
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 45/229 (19%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F+++ GEG HAG +AVF RF GCNL C +CDT + G
Sbjct: 2 KVVEKFVSINGEGTHAGELAVFVRFRGCNLN-----------CSYCDTMWANEPGCPYAE 50
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTI 122
+ +Q+ IEE + + LTGGEPLLQ ++P L K+ + +ETNG +
Sbjct: 51 ESPEQIVSYIEETKV------KNVTLTGGEPLLQKEMPELLRLLSEKKELRVEIETNGAV 104
Query: 123 EPP----QGIDWICVSPKAGCD-----------LKIKGGQELKLV------FPQVNVSPE 161
+ G + K ++ +K V + + +
Sbjct: 105 DLSGFRNGGGCVFTMDYKLPSSGCENGMRTENFSILEKKDTVKFVVGSRVDLERADQIIQ 164
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
Y D P+ G E ++Y ++ R+ +Q HK I
Sbjct: 165 EYGLIDRCHVYFSPVFGKIEPE---QIVNYMVEHRLNGVRIQIQIHKVI 210
>gi|312898407|ref|ZP_07757797.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
gi|310620326|gb|EFQ03896.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
Length = 217
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 86/228 (37%), Gaps = 44/228 (19%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F+++ GEG AG +A+F RF GCNL C +CDT +
Sbjct: 2 RVVEKFVSINGEGQRAGELALFIRFQGCNLS-----------CTYCDTAWANEADCPYEE 50
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+ ++ D + +T LTGGEPLLQ LI L+K GF + +ETNG +
Sbjct: 51 ESPQEIVDYACREGVTD------ITLTGGEPLLQEGIDELIDLLSKHGFHVEIETNGAVS 104
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF----------------- 166
S L G ++ + ++ ++ + F
Sbjct: 105 LLPFCQKRRPSFTMDYKLPGSGCEKAMMTGNFAILTEKDTVKFVVSSTEDLQKAEEIATR 164
Query: 167 ----DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + P+ G + + Q WRL +Q HKFI
Sbjct: 165 YDLVNHCAVYISPVFGSIDP---AQMVDFMKQRRLNGWRLQLQLHKFI 209
>gi|257463610|ref|ZP_05628001.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
gi|317061164|ref|ZP_07925649.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
gi|313686840|gb|EFS23675.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
Length = 222
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 46/234 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + E+F ++ GEG AG++A+F RF CNL C +CDT + + +
Sbjct: 1 MPKYKVVEMFESINGEGKKAGQLALFIRFQFCNLN-----------CSYCDTKWANTKKS 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
+++++ + ++ I + LTGGEPLLQ + L ++ FE+ +ET
Sbjct: 50 PFTWMSLEEILETARQRGI------KNITLTGGEPLLQSHIFALLEAFSKEKMFEVEIET 103
Query: 119 NGTIEPPQGIDWIC-VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF------DFER- 170
NG+I + S L +E + +VS ++ + F D ER
Sbjct: 104 NGSIPLKKFQSIENPPSFTLDYKLPQSNMEEYMCLENFSSVSAKDTVKFVVSDLQDLERA 163
Query: 171 --------------FSLQPMDGPFLEENTNLAISYCFQ-NPK-WRLSVQTHKFI 208
L P+ G + + + + + +Q HKFI
Sbjct: 164 REIMNQYSLIGKCSLYLSPVFGKI---PLPTIVDFMKKYHLNGVNMQLQMHKFI 214
>gi|169632733|ref|YP_001706469.1| putative radical activating enzyme [Acinetobacter baumannii SDF]
gi|169151525|emb|CAP00292.1| putative radical activating enzyme [Acinetobacter baumannii]
Length = 236
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++ + + E + + Y +TGGEPL Q + + +Q L GF++++ET+G +
Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGAL 117
Query: 123 EPPQGIDWIC----VSPKAGCDLKIKGGQELKLVFPQVNV-------SPENYIGFDFERF 171
+ + + + + L + P+ + + E++
Sbjct: 118 DVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSKQQVEQY 177
Query: 172 SLQ---------PMDGPF-----LEENTNLAISYCF-QNPKWRLSVQTHKFI 208
LQ P L + R +Q HK +
Sbjct: 178 QLQTKVSTVWFSPAFAVEKGAVGLPRLARDMAQWILDDKLPVRFQLQLHKLL 229
>gi|150017397|ref|YP_001309651.1| radical SAM domain-containing protein [Clostridium beijerinckii
NCIMB 8052]
gi|149903862|gb|ABR34695.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 222
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 48/234 (20%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++I E FL++ GEG +G +A F RF GCNL +C +CDT + +
Sbjct: 1 MFNIIEKFLSIDGEGPTSGELATFIRFQGCNL-----------RCSWCDTTYSWDKENTS 49
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
+++ I+E +T LTGGEPL+Q ++ L + ++ +ETNG
Sbjct: 50 EVLTAEEIYKYIKENKVTN------VTLTGGEPLIQKNIHELLGLLNSDDNLKVHIETNG 103
Query: 121 ---------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF------------PQVNVS 159
+ + + L +V + ++
Sbjct: 104 AVNIGTFKNKFINNNISYIVDFKLPSSNMMDRMDLNNLSIVESNDVYKFVIGSKEDLQIA 163
Query: 160 PENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
E + L P+ G + + K RL VQ HK I
Sbjct: 164 YEIICKHNLTSKCFVYLSPVSGNIE---MQEIVEFMKDKKLNKVRLQVQLHKII 214
>gi|262278177|ref|ZP_06055962.1| radical SAM superfamily protein [Acinetobacter calcoaceticus
RUH2202]
gi|262258528|gb|EEY77261.1| radical SAM superfamily protein [Acinetobacter calcoaceticus
RUH2202]
Length = 236
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 49/233 (21%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++++ + + + + Y +TGGEPL Q + + +Q L + GF++++ET+G +
Sbjct: 64 RFSLEHIIETATQ------FQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117
Query: 123 EPPQGIDWICVSPK---------------------AGCDLKIKGGQELKLVFPQVNVSPE 161
+ + + A +K + + V
Sbjct: 118 DVSKVDSRVSKVLDLKTPTSGEEHRNLISNIDHLTAHDQIKFVICNREDYEWSKQQVEIY 177
Query: 162 NYIGFDFERFSLQPMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
P +LA R +Q HK +
Sbjct: 178 QLHK-KVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229
>gi|295695132|ref|YP_003588370.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
gi|295410734|gb|ADG05226.1| Radical SAM domain protein [Bacillus tusciae DSM 2912]
Length = 218
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 49/231 (21%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E+F ++QGE G VF RF+GCNL +C +CDT + +GT R
Sbjct: 2 KLNELFFSIQGESSSMGLPTVFVRFTGCNL-----------RCSYCDTTYAYFEGT---R 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121
+++ I+E R LTGGEPL+Q L+ L +E+++ET+G+
Sbjct: 48 TTPEEIFRQIQE------YGVRRVCLTGGEPLIQPREELQQLLDLLGGNNYEVSIETDGS 101
Query: 122 IE------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN------------------ 157
I+ P+ + + + LK + P+ +
Sbjct: 102 IDIERVKLRPKQRFILDIKVPSSDMHTYMDFDNLKRIVPERDEIKFVVGNEEDYLWSKEI 161
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ R P+ G LA RL VQ HK++
Sbjct: 162 IRRYEISPERGYRLLFSPVYGVLEPR--TLAEWILQDEWDVRLQVQLHKWL 210
>gi|262379425|ref|ZP_06072581.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
radioresistens SH164]
gi|262298882|gb|EEY86795.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Acinetobacter
radioresistens SH164]
Length = 236
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 80/232 (34%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE AG VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGV 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++++ Y +TGGEPL Q + + +Q L G ++++ET+G +
Sbjct: 64 RQSLEEIIA------TARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGAL 117
Query: 123 EPPQGIDWI-------CVSPKA------GCDLKIKGGQELKLVFPQVN---VSPENYIGF 166
+ + + S + ++K V + + E +
Sbjct: 118 DVSKVDPRVSKVLDLKTPSSGEVTRNLMSNLEFLTSNDQIKFVICNRDDYQWAKEQLALY 177
Query: 167 DFER----FSLQPMDGPFLEENT------NLAISYCFQNPKWRLSVQTHKFI 208
E+ P LA R +Q HK +
Sbjct: 178 SLEQKVSTVWFSPAFAVEKGAAQLPKLARELAQWILDDQLPVRFQLQLHKLL 229
>gi|83593294|ref|YP_427046.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
gi|83576208|gb|ABC22759.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
Length = 235
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/235 (26%), Positives = 94/235 (40%), Gaps = 46/235 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I+E+F TLQGEG +G+ +VF R +GCNL +C +CDTDF +
Sbjct: 18 LWIQEVFYTLQGEGPFSGQPSVFVRTAGCNL-----------RCAWCDTDF----ESSAW 62
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG--- 120
+ + +L +I+ + VLTGGEPL Q PL++AL RG + +ETNG
Sbjct: 63 KPPLPELLAVIDSRRPR---VCDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTLW 119
Query: 121 -TIEPPQGIDWIC-VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER-------- 170
+ G+ +C + + K V P + + +
Sbjct: 120 RDLPFGPGLSIVCSPKTRTLDPQLVPRIDAFKYVIAAGETDPTDGLPALSTQHPGRAERL 179
Query: 171 --------FSLQPMDGPFLE------ENTNLAISYCFQ-NPKWRLSVQTHKFIGI 210
+ P D E+ NLA + +RL VQ HK + I
Sbjct: 180 FRPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKI 234
>gi|157273449|gb|ABV27348.1| radical SAM domain protein [Candidatus Chloracidobacterium
thermophilum]
Length = 210
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 37/221 (16%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF ++QGE +AG F R +GC+L +C +CD+++ GT
Sbjct: 2 RITEIFFSIQGESSYAGLPCAFVRTTGCDL-----------RCTWCDSEYTFTGGTH--- 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
+V+++ + + R LTGGEPLLQ D+ L + L + G+ + +ET G +
Sbjct: 48 MSVEEILERV------RAYPTRLVELTGGEPLLQKDIYELSERLLEEGYTVLIETGGHRD 101
Query: 124 PPQGIDWIC-----VSPKAGCDLKI--------KGGQELKLVFPQVN---VSPENYIGFD 167
+ I P +G K E+K V +N + E +
Sbjct: 102 VSRLDPRIVKILDIKCPGSGMVEKNLWSNLDYITRRDEVKFVLADLNDYFWAREILRIYR 161
Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
E+ + F E + + R Q HK I
Sbjct: 162 LEQRTNVLFSTVFGVERRPIVERILADGLQVRFQTQLHKLI 202
>gi|299769138|ref|YP_003731164.1| Radical SAM superfamily protein [Acinetobacter sp. DR1]
gi|298699226|gb|ADI89791.1| Radical SAM superfamily protein [Acinetobacter sp. DR1]
Length = 236
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 53/235 (22%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R++++ + + + + Y +TGGEPL Q + + +Q L + GF++++ET+G +
Sbjct: 64 RFSLEHIIETATQ------YQTPYICVTGGEPLAQPNCLILLQRLCEAGFDVSLETSGAL 117
Query: 123 EPPQGIDWICVSPK---------------------AGCDLKIKGGQELKLVFPQVNVSPE 161
+ + + A +K + + V
Sbjct: 118 DVSKVDSRVSKVLDLKTPTSGEEHRNLISNLDHLTAHDQIKFVICNREDYEWSKQQVEKY 177
Query: 162 NYIGFDFERFSLQP--------MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P + P L + LA R +Q HK +
Sbjct: 178 QLHK-KVSTVWFSPAFAVEKGAVSLPRLARD--LAQWILDDKLLVRFQLQLHKLL 229
>gi|15607013|ref|NP_214395.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5]
gi|2984272|gb|AAC07798.1| hypothetical protein aq_2035 [Aquifex aeolicus VF5]
Length = 219
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 43/226 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
L ++ E++ ++QGEG G +VF R GCNL +C +CD +
Sbjct: 11 TLIALNEVYESIQGEGLLVGLPSVFIRLQGCNL-----------RCPWCDQPEALSFSGR 59
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
+ + LI E + ++ V+TGGEP ++P I + L G+ + +ETNG
Sbjct: 60 KVKLS-----SLINEL---KKFTAKHIVITGGEPFAHRELPFIVEFLLSEGYSVQIETNG 111
Query: 121 -----TIEPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+E I SPK +K +ELK V S E +FER
Sbjct: 112 TLWVEEMEKFAEGIHITCSPKGVAKYYVHPKILKYAKELKFVV-DKEFSKEVLKKEEFER 170
Query: 171 FS------LQPMDGPFLEENTNLAISYCFQNPK----WRLSVQTHK 206
F LQP +E A+ + K R+ Q HK
Sbjct: 171 FLREGKVVLQPESN--RKEMMEKALKIQKELLKECYTVRVIPQVHK 214
>gi|169795077|ref|YP_001712870.1| putative radical activating enzyme [Acinetobacter baumannii AYE]
gi|169148004|emb|CAM85867.1| putative radical activating enzyme [Acinetobacter baumannii AYE]
Length = 236
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++ + + E + + Y +TGGEPL Q + + +Q L F++++ET+G +
Sbjct: 64 RLSLEHIIETAE------KYQTPYICVTGGEPLAQPNCLILLQRLCDASFDVSLETSGAL 117
Query: 123 EPPQGIDWIC----VSPKAGCDLKIKGGQELKLVFPQVNV-------SPENYIGFDFERF 171
+ + + + + L + P+ + + E++
Sbjct: 118 DVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSKQQVEQY 177
Query: 172 SLQ---------PMDGPFLEE------NTNLAISYCFQNPKWRLSVQTHKFI 208
LQ P +LA R +Q HK +
Sbjct: 178 QLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLL 229
>gi|313891412|ref|ZP_07825028.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Dialister microaerophilus UPII 345-E]
gi|313120187|gb|EFR43363.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Dialister microaerophilus UPII 345-E]
Length = 226
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 43/226 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF +++GEG G +A+F R + CNL +C +CDT +
Sbjct: 13 IVEIFDSIEGEGKRTGYMAIFVRLASCNL-----------RCTYCDTSYALTLKDTKEIL 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ +L + I + TGGEP+L + + L K G+EI +ET+G+I
Sbjct: 62 SEKELIEKIH------SYPWKKITFTGGEPMLHPLQNICETLGKEGYEINIETSGSIPLF 115
Query: 126 QGID---WICVSPK-----------AGCDLKIKGGQELKLVFPQ-------VNVSPENYI 164
+ + K K+ LK V + Y
Sbjct: 116 DKRPPNLFYTMDFKCTGSGMKQYMIEENFEKLNKDDVLKFVVGDLTDLGDMRKIIKTKYN 175
Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ RF + P+ G ++Y + + VQ HK I
Sbjct: 176 NVEQPRFYVSPVWGKIKP---VELVNYVKNHKMTNVCVQVQLHKII 218
>gi|302342762|ref|YP_003807291.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
gi|301639375|gb|ADK84697.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
Length = 212
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/227 (22%), Positives = 78/227 (34%), Gaps = 44/227 (19%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF ++QGEG AG F R +GC L +C +CDT + G
Sbjct: 1 MLEVCEIFQSIQGEGVDAGLPCAFVRLAGCPL-----------RCAWCDTAYAW---QGG 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG- 120
++ ++ E LTGGEPL Q + P L+ AL G + VET+G
Sbjct: 47 AAMSLPEVLARALA------FELELVELTGGEPLAQAETPALLGALCDAGRRVLVETSGA 100
Query: 121 ------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF--- 171
+D C ++ + L QV + ++F R
Sbjct: 101 LDIAVVDERVHLIMDVKCPGSGMSERMRWRNLDIL-PPGAQVKFVLADRADYEFARRVID 159
Query: 172 ----------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
L + G + R +Q HKFI
Sbjct: 160 AHGLGHRARPLLSVVHGRLAPA--KVVEWMLADRLPARFQLQLHKFI 204
>gi|255320799|ref|ZP_05361974.1| organic radical activating enzyme [Acinetobacter radioresistens
SK82]
gi|255302176|gb|EET81418.1| organic radical activating enzyme [Acinetobacter radioresistens
SK82]
Length = 236
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 79/232 (34%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE AG VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANAAGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGV 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
R +++++ Y +TGGEPL Q + + +Q L G ++++ET+G +
Sbjct: 64 RQSLEEIIA------TARSYNTPYICVTGGEPLAQPNCLVLLQRLCDLGHKVSLETSGAL 117
Query: 123 EPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVN---VSPENYIGF 166
+ + + + ++K V + + E +
Sbjct: 118 DVSKVDPRVSKVLDLKTPNSGEVTRNLMSNLEFLTSNDQIKFVICNRDDYQWAKEQLALY 177
Query: 167 DFER----FSLQPMDGPFLEENT------NLAISYCFQNPKWRLSVQTHKFI 208
E+ P LA R +Q HK +
Sbjct: 178 SLEQKVSTVWFSPAFAVEKGAAQLPKLARELAQWILDDQLPVRFQLQLHKLL 229
>gi|290967883|ref|ZP_06559433.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|290782022|gb|EFD94600.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
Length = 210
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 44/227 (19%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
MK + E+F ++ GEG AG +A F R GCNL +C +CDT + +G
Sbjct: 1 MKNKLYVNELFNSIDGEGRRAGELASFIRLCGCNL-----------RCSYCDTTYAFTEG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ +++ + + R LTGGEPLLQ L+Q L R + +ETN
Sbjct: 50 ------TPMAVEEILSQL------QYRNITLTGGEPLLQDVHLLLQRLQDRD--VNIETN 95
Query: 120 GTIEPPQ----GIDWICVS-----------PKAGCDLKIKGGQELKLVF-PQVNVSPENY 163
G++ W V K ++ LK V ++
Sbjct: 96 GSVSIRPYLSYSHVWFTVDYKSISSGMTTAMKEENFQLLRPQDVLKFVVGTHADLEQARK 155
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
I F + F ++Y WRL +Q HK+I
Sbjct: 156 ICAYFNPSCPIYISAVFAAIEPKEIVAYMEAYRLMNWRLQLQLHKYI 202
>gi|320105235|ref|YP_004180826.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC
43644]
gi|319752517|gb|ADV64277.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644]
Length = 293
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 38/224 (16%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E++ ++QGEG AG VF R + C+L +C +CDT + +GG
Sbjct: 80 RLHEVYRSIQGEGTWAGLPCVFVRLTACHL-----------RCVYCDTPHAFV-FREGGD 127
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
+ ++ + + E G +TGGEPLLQ + +PL+ AL GFE+ +ET+G+++
Sbjct: 128 FTIEAIVARVAELAEPGG----LVEVTGGEPLLQPEALPLMTALADAGFEVLLETSGSLD 183
Query: 124 PPQGIDWI-------CVSPKAGCDLKIKGGQELKL-------VFPQVNVSP-----ENYI 164
+ LK V + + +
Sbjct: 184 IAPVDRRVHIIMDLKTPGSGEEAANLWTNLDHLKPTDNLKFVVTNRADFDWTLEIVRRHD 243
Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P + LA R+ +Q HK I
Sbjct: 244 LTARCPVLVSPAFDAVSPRD--LAEWILKSRLPLRMQLQLHKLI 285
>gi|189500807|ref|YP_001960277.1| Radical SAM domain-containing protein [Chlorobium phaeobacteroides
BS1]
gi|189496248|gb|ACE04796.1| Radical SAM domain protein [Chlorobium phaeobacteroides BS1]
Length = 223
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 79/228 (34%), Gaps = 44/228 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF ++QGE AG F R SGC+ + CR+CDT + ++ G
Sbjct: 7 INEIFRSIQGESTFAGTPCTFIRLSGCD-----------SACRWCDTRYASVE--NGTAM 53
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT--- 121
+ ++ +TGGEPL Q L+Q L +G + +ET G
Sbjct: 54 TLSEIE------RRADGFRTSLVEITGGEPLQQEPVYALMQQLCDKGHTVLLETGGFLPV 107
Query: 122 --------------IEPPQGIDWICVS---PKAGCDLKIKGGQELKLVFP---QVNVSPE 161
IC S +K E KL+ + + +
Sbjct: 108 DRVDPRVHKIIDLKAPSSGESGRICTSNIELAVSAAEPLKKSFEFKLLLASREDYDWAVD 167
Query: 162 NYIGFDFERFSLQPMDGPFLEENT-NLAISYCFQNPKWRLSVQTHKFI 208
+ + M F + + LA N RL +Q HK+I
Sbjct: 168 LLNRYRLNQHCTVLMGTVFNKLHPAELAAWILEDNLNVRLQLQLHKYI 215
>gi|237668046|ref|ZP_04528030.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|237656394|gb|EEP53950.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 222
Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 48/234 (20%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++I E FL++ GEG +G +A F RF GCNL +C +CDT + +
Sbjct: 1 MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120
R N ++ D I+ + LTGGEPL+Q ++ + L I +ETNG
Sbjct: 50 ERLNAKEIYDYIKSNKVNN------VTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103
Query: 121 TIEPPQ------------GIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPEN 162
+I+ +D+ S K + K V ++ +
Sbjct: 104 SIDIEPFKKKYTRGNISYIVDFKLPSSKMSSHMNYNNINMISKNDVYKFVIGNMDDLKKA 163
Query: 163 YIGF------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
Y + + L P+ G + + + K RL VQ HK I
Sbjct: 164 YEIIHVYDLANKCKVYLSPVTGNIE---MSDIVEFMKDKNMNKVRLQVQLHKII 214
>gi|182416803|ref|ZP_02948194.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521]
gi|182379265|gb|EDT76764.1| Fe-S oxidoreductase of MoaA family [Clostridium butyricum 5521]
Length = 222
Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 48/234 (20%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++I E FL++ GEG +G +A F RF GCNL +C +CDT + +
Sbjct: 1 MFNIIEKFLSVDGEGPSSGELATFIRFQGCNL-----------RCSWCDTVYSWQKENIN 49
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNG 120
R N ++ D I+ + LTGGEPL+Q ++ + L I +ETNG
Sbjct: 50 ERLNAKEIYDYIKSNKVNN------VTLTGGEPLIQKNIDELLRLLDDDSNLNIHIETNG 103
Query: 121 TIEPPQ------------GIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPEN 162
+I+ +D+ S K + K V ++ +
Sbjct: 104 SIDIEPFKKKYTRGNISYIVDFKLPSSKMSSHMNYNNINMISKNDVYKFVIGNMDYLKKA 163
Query: 163 YIGF------DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
Y + + L P+ G + + + K RL VQ HK I
Sbjct: 164 YEIIHVYDLANKCKVYLSPVTGNIE---MSDIVEFMKDKNMNKVRLQVQLHKII 214
>gi|257077184|ref|ZP_05571545.1| ATP binding cassette transporter, ExsD protein related [Ferroplasma
acidarmanus fer1]
Length = 229
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 41/229 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+K+Y I EIFL++QGEG ++G VF R CNL +C +CDT + +
Sbjct: 14 LKMY-INEIFLSIQGEGLYSGEKMVFIRTEYCNL-----------RCSWCDTKYSFYE-- 59
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G ++D++ + + I + LTGGEPLLQ D+ ++ + I +ET+G
Sbjct: 60 -GKEMSIDEIVE--SARNINSGHGASWICLTGGEPLLQKDISVLVDRLSEEYNILLETSG 116
Query: 121 ----------TIEPPQGIDWICVSPKAGCDLK------IKGGQELKLVFPQV---NVSPE 161
++ + ID+ S ++ G +K V + NV+ E
Sbjct: 117 SLNIGRFLPNHVKVKKDIDFKLPSSGMYRKFNDKNISYMEEGDYIKFVVNDLNDFNVAME 176
Query: 162 NYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208
+ +QP+ G ++ LA ++ + P RL +Q HK+I
Sbjct: 177 EIEKIGKNVKIVVQPVYGTDIK---VLADAFIDKAPSNARLMLQEHKYI 222
>gi|262368582|ref|ZP_06061911.1| radical SAM domain-containing protein [Acinetobacter johnsonii
SH046]
gi|262316260|gb|EEY97298.1| radical SAM domain-containing protein [Acinetobacter johnsonii
SH046]
Length = 236
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 47/232 (20%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE +G VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFYSLQGEANTSGLPTVFIRLTGCPL-----------RCTYCDTTYSF---EGGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
R ++DQ+ T + + Y +TGGEPL Q + +PL+Q L G E+++ET+G +
Sbjct: 64 RQSLDQIIQ------TTLDFKTPYVCVTGGEPLAQPNALPLMQRLADLGCEVSLETSGAL 117
Query: 123 EPPQGIDWICVSPK-------------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ + + + ++K V + +
Sbjct: 118 DVSKVDPRVSKVLDLKTPTSGEVARNLLSNLDHLTQHDQIKFVICNREDYEWSKQQVEDY 177
Query: 170 RF-------SLQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P + +LA + +Q HK +
Sbjct: 178 KLNEKVSTVWFSPAFAVEKGAARLPQLARDLAQWILEDHLPVCFQLQLHKLL 229
>gi|164686487|ref|ZP_02210515.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM
16795]
gi|164604498|gb|EDQ97963.1| hypothetical protein CLOBAR_00052 [Clostridium bartlettii DSM
16795]
Length = 220
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 40/229 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++I E F+++ GEG AG +A F RF GCNL +C +CDT + +
Sbjct: 1 MFNIIEKFVSIDGEGPTAGELATFIRFQGCNL-----------RCSWCDTTYSFDKSEIT 49
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALN-KRGFEIAVETNG 120
+ ++ D I+ ++ LTGGEPL + ++ LN + + +ETNG
Sbjct: 50 EVLSAQEIYDYIKSTGVSN------VTLTGGEPLFQENINEVLSLLNDDKNLVVHIETNG 103
Query: 121 TIE-------PPQGIDWICVSPKAGCDLKIKGGQEL-----KLVFPQVNVSPEN------ 162
I+ P I + + + L K V+ V S E+
Sbjct: 104 AIDILPFKEKYPNIIFILDYKLASSNMTHLMKLDNLNYVTNKDVYKFVLGSDEDLQEAYE 163
Query: 163 -YIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
F+ L F + + + K RL VQ HK I
Sbjct: 164 LITKFNLTNKCLVYFSPVFSAIKLEDIVEFMKEKNLNKVRLQVQLHKVI 212
>gi|299135832|ref|ZP_07029016.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
gi|298601956|gb|EFI58110.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX8]
Length = 227
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 81/235 (34%), Gaps = 54/235 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E++ ++QGE AG +F R +GCNL +C +CD+++ G +
Sbjct: 5 ELYKSVQGESSFAGVPCIFVRLAGCNL-----------RCAWCDSEYTFT---GGKPFTT 50
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE-- 123
D++ IE TGGEP+LQ +PL+Q L + + +ET+G
Sbjct: 51 DEIVAQIEALQP-----CPLIEFTGGEPMLQQKELLPLMQRLLDANYTLMMETSGERPLA 105
Query: 124 --PPQGIDWICV----------SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170
P + V S + E+K V E F
Sbjct: 106 DVPKAVHKIVDVKCPGAGSAANSFHMANLDALTPHDEVKFVLSNR-ADYEFARDFIRTHA 164
Query: 171 -------FSLQPMDGPFLEE---------NTNLAISYCFQN-PKWRLSVQTHKFI 208
L P E + + + + RLS+Q HK+I
Sbjct: 165 LETTCGSILLSPAFSKAPSELRTTDNATLDPRFVVEWMLADGLPARLSLQIHKYI 219
>gi|108763752|ref|YP_628748.1| radical SAM domain-containing protein [Myxococcus xanthus DK 1622]
gi|108467632|gb|ABF92817.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
Length = 230
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 52/224 (23%), Positives = 82/224 (36%), Gaps = 43/224 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+KEI+L++QGE HAG + F R +GC+L +C +CD++F G R
Sbjct: 21 VKEIYLSVQGESSHAGLLCAFIRLTGCHL-----------RCTYCDSEFAFH---GGARR 66
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
+ + + +TGGEPLLQ V PL++AL GF++ +ET+G I+
Sbjct: 67 KIADIVSEV------RGLRTPMVEVTGGEPLLQPGVYPLMEALLDAGFKVLLETSGAIDV 120
Query: 124 ------PPQGIDWICVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIGFDFERF 171
+ +D S + ELK V +
Sbjct: 121 RLVPPAVHKIVDMKTPSSGEHLRNDYRNFTSMNANDELKFVIGSREDYDWAKALIAEHQL 180
Query: 172 -------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ LA R +Q HK++
Sbjct: 181 LQKPYGSLFSTVFDKLHPR--ELAEWVIEDRLAVRFQLQMHKYM 222
>gi|125975585|ref|YP_001039495.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
gi|256005910|ref|ZP_05430855.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
gi|281416597|ref|ZP_06247617.1| Radical SAM domain protein [Clostridium thermocellum JW20]
gi|125715810|gb|ABN54302.1| Radical SAM [Clostridium thermocellum ATCC 27405]
gi|255990114|gb|EEU00251.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
gi|281407999|gb|EFB38257.1| Radical SAM domain protein [Clostridium thermocellum JW20]
gi|316939704|gb|ADU73738.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
Length = 210
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 87/225 (38%), Gaps = 45/225 (20%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIFL++QGE AG VF RF+GCNL +C +CDT + +G
Sbjct: 2 KVNEIFLSIQGESLSAGFPTVFVRFTGCNL-----------RCSYCDTRYAYKEGED--- 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI-- 122
++ + I++ + LTGGEPLLQ ++ + + + +ETNG++
Sbjct: 48 MTPSEVFEEIKKL------HYKRVCLTGGEPLLQKELGQLLEFLD-DYIVTIETNGSVSL 100
Query: 123 --------EPPQGIDWICVSPKAGCDLKIKGG------QELKLVF-PQVNVSPENYIGFD 167
+ +D S + + E+K V +V+ I
Sbjct: 101 KSVELKNPKHSYVMDMKVPSSGCSDQMLFENFDLLRDNDEIKFVIGSRVDYDWAKNIISK 160
Query: 168 FER---FSLQPMDGPFLEENTNLAISYCFQ-NPKWRLSVQTHKFI 208
+ + + P+ G + + + R VQ HK I
Sbjct: 161 YHKKGTVTFSPVYGKIDYSG---IVKWILEDKLDARFQVQLHKVI 202
>gi|187779781|ref|ZP_02996254.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC
15579]
gi|187773406|gb|EDU37208.1| hypothetical protein CLOSPO_03377 [Clostridium sporogenes ATCC
15579]
Length = 226
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F+++ GEG +G++A+F RF+GCNL C +CDT + +
Sbjct: 6 MDFKVVERFVSINGEGRRSGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVS 54
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + D I+ Q I + LTGGEPL+Q L + + +ETN
Sbjct: 55 YQLISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKVLSKDKELYVEIETN 108
Query: 120 G----------TIEPPQGIDWICVSPKAGCDLKIKGG------QELKLV---FPQVNVSP 160
G P +D+ S + + +K V + +
Sbjct: 109 GSVLLDEFLDIENSPSFTMDYKLPSSNMENKMALDNFRYLTNKDTVKFVSGSIEDLEKAK 168
Query: 161 ENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
E ++ + P+ G N + + + N L +Q HK I
Sbjct: 169 EIIKKYNLVNTTNIYISPVFGKI---NLDTIVEFMKNNKMNGVNLQLQLHKII 218
>gi|222528238|ref|YP_002572120.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222455085|gb|ACM59347.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 225
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 41/226 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+++ E F++++GEG +G AVF RF+GCNL C +CDT + + +
Sbjct: 13 KFNVVEKFVSIEGEGIRSGYPAVFVRFAGCNLS-----------CSWCDTKYAN-ENPQY 60
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNG- 120
+ +D L D I I + LTGGEPL+Q + + I L GFE+ +ETNG
Sbjct: 61 EQIGIDALLDFILSTGI------KRVTLTGGEPLIQPHIYILIDRLIYEGFEVNIETNGS 114
Query: 121 ------TIEPPQGIDWICVSPKAGCDLKIKG------GQELKLV---FPQVNVSPENYIG 165
+ +D+ C S + + LK V + + +
Sbjct: 115 VSIKHVPRDAIITMDYKCPSSGMEDRMIVDNISLLGQKDVLKFVVGTYEDLKTAERIIKT 174
Query: 166 FDF-ERFSLQPMDGPFLEENTNLAISYCFQNPKW--RLSVQTHKFI 208
F P+ G + + +N + R+ +Q HK I
Sbjct: 175 FKPRCNIFFSPVFGMIKP---AEIVKFLIENKLFDTRVQIQLHKII 217
>gi|94971669|ref|YP_593717.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
Ellin345]
gi|94553719|gb|ABF43643.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
Ellin345]
Length = 226
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 53/236 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EI+ +LQGE + G +F R + CNL +C +CD+++ G +
Sbjct: 3 ITEIYRSLQGESSYTGIPCIFVRLTACNL-----------RCAWCDSEYTF---KGGRKM 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ D++ +++ G +TGGEPLLQ VP ++ L G+++ +ET+G
Sbjct: 49 SEDEIFAEVQKLAPGG-----LVEITGGEPLLQERELVPFMERLVASGYKVLIETSGERP 103
Query: 124 -------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER------ 170
+ +D C + G +I+ L ++ + ++F R
Sbjct: 104 LANVPQDVVKIVDVKCPASGEGGSFRIENLDAL-TPHDEIKFVISDRADYEFAREFTRQH 162
Query: 171 --------FSLQPMDGPF----------LEENTNLAISYCFQNPKWRLSVQTHKFI 208
P L + +LA RL +QTHKFI
Sbjct: 163 GLENKVSSVIFSPAFRKDARGTRDASHCLVDPQDLANWVLEDQLDVRLGLQTHKFI 218
>gi|322369255|ref|ZP_08043820.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus
DX253]
gi|320550987|gb|EFW92636.1| hypothetical protein ZOD2009_07199 [Haladaptatus paucihalophilus
DX253]
Length = 264
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T
Sbjct: 28 LPINELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-HA 75
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
R VD++ +E + + VLTGGEPL+ + L+ L++RG+ VETNGTI
Sbjct: 76 RMTVDEIVAEVE------SYDANHIVLTGGEPLVHEESVTLLDRLSERGYHTTVETNGTI 129
Query: 123 EPPQGIDWICVSPK-----AGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
ID VSPK + KG E + + + E
Sbjct: 130 FRDAPIDLASVSPKLASSTPTPETDPKGDGEWEDRHEERRIDVETLAAL 178
>gi|222475965|ref|YP_002564486.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
gi|222454336|gb|ACM58600.1| Radical SAM domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 258
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T G
Sbjct: 21 LPINEVFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-GA 68
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
+VD + + + ++ + VLTGGEPL+ + + L++ L G+ VETNGTI
Sbjct: 69 WRDVDSIIEEV-----HSHEQANHVVLTGGEPLIHEESIELLERLAADGYHTTVETNGTI 123
Query: 123 EPPQGIDWICVSPK-------AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQ 174
ID +SPK D K +G E K ++++ + + D+E +
Sbjct: 124 YRDAPIDLASISPKLASSTPTPDRDPKGEGEWEEKHEQNRIDMDALSQMVDDYETQLKFV 183
Query: 175 PMDGPFLEENTNLA 188
D L + T+L
Sbjct: 184 VTDASDLPQITDLV 197
>gi|119357772|ref|YP_912416.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
DSM 266]
gi|119355121|gb|ABL65992.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
Length = 223
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 81/233 (34%), Gaps = 45/233 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+K SI EIF ++QGE AG F R +GC C FCDT + G
Sbjct: 3 LKELSISEIFHSIQGESSFAGWPCAFVRLAGC-----------GNGCNFCDTTYAETDGF 51
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETN 119
+ ++ D+I + T +TGGEPLLQ V PL+Q L G + +ET
Sbjct: 52 ------MLEIPDIIMQ---TQAFRAPIIEITGGEPLLQPAVYPLMQQLCNLGETVLLETG 102
Query: 120 GTIEPPQGIDWI--------------------CVSPKAGCDLKIKGGQELKLVFPQVNVS 159
G + + + ++ K+ E K+V
Sbjct: 103 GFLSVDKVDSRVHKIIDLKPPSSGVCERNCPENITLALHAGKKLSQTFEFKIVVASREDY 162
Query: 160 PENYIGFDFERFSLQ--PMDGPFLEENTN--LAISYCFQNPKWRLSVQTHKFI 208
+ M G E+ LA R+ +Q HK+I
Sbjct: 163 DWAKALLLQHQLYCSCIVMMGVIHEKLEPSTLAEWILRDRLPVRMQLQLHKYI 215
>gi|149173902|ref|ZP_01852531.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797]
gi|148847432|gb|EDL61766.1| hypothetical protein PM8797T_05675 [Planctomyces maris DSM 8797]
Length = 226
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 27/196 (13%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF + QGEG G ++F R SGCNL +C FCDT + +G +
Sbjct: 3 ISEIFHSPQGEGKWIGVPSIFIRTSGCNL-----------RCWFCDTPYTSWNP-EGEKM 50
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
+VDQ+ + I + + + V+TGGEP+L ++ L Q L+ G I +ET GTI
Sbjct: 51 SVDQILEHIAQ------YDCEHVVVTGGEPMLSHEIESLTQRLHADGKIITIETAGTILS 104
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF---L 181
D + +SPK + + + + + + + E P F
Sbjct: 105 DVHADLMSISPKLSNSIPVDNPE-----WAHRHDARRDQPTVIHELIKRHPYQIKFVVDR 159
Query: 182 EENTNLAISYCFQNPK 197
E+ Y + P+
Sbjct: 160 REDIAEIEDYLIRYPE 175
>gi|158520514|ref|YP_001528384.1| radical SAM domain-containing protein [Desulfococcus oleovorans
Hxd3]
gi|158509340|gb|ABW66307.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
Length = 212
Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 78/228 (34%), Gaps = 44/228 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ E+F ++QGE AG F R +GCNL C +CDT + G
Sbjct: 1 MSLHVSELFFSIQGESLDAGLACAFVRLAGCNLC-----------CAYCDTAYARQGG-- 47
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
++ ++++ +TGGEPLLQ + P LIQ L G+ + +ETNG
Sbjct: 48 ----TPMEIPEILDR---VARFGCSLVEITGGEPLLQKETPLLIQRLLSVGYRVLLETNG 100
Query: 121 TIE-------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE---- 169
T + +D C S + L QV + + F
Sbjct: 101 TQNIGLVDKSCIRIVDVKCPSSGESEKNDARNLDRL-AAHDQVKFVISDRTDYLFAKKTA 159
Query: 170 ---------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ G LA RL +Q HK +
Sbjct: 160 GRITAVAPGHILFSTVHGVLDPA--QLAHWMLADGLPVRLHLQLHKIL 205
>gi|149196484|ref|ZP_01873538.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155]
gi|149140164|gb|EDM28563.1| queuosine biosynthesis protein [Lentisphaera araneosa HTCC2155]
Length = 212
Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 38/224 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I EI+ +LQGE +G +F R SGCNL +C +CDT++ G
Sbjct: 1 MLYITEIYKSLQGESTWSGLACIFIRLSGCNL-----------RCSWCDTEYSFT---SG 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGT 121
+ ++D + D +E+ +TGGEPL L+Q L G + VET G
Sbjct: 47 DKLSIDNILDRVEQL------NCDLVEVTGGEPLAQDKVGELVQKLLDLGKTVLVETGGH 100
Query: 122 I-------EPPQGIDWICVSPKAGCDL------KIKGGQELKLVFPQVN---VSPENYIG 165
+ E + +D C + K K+ E+K V + +
Sbjct: 101 MDINLVSKESIRIMDIKCPASKMSHKNDLKNIAKLTPKDEVKFVIQNKEDFLWAEKTIRE 160
Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
+ E+ M F + Q+ R+ +Q HK I
Sbjct: 161 YKLEKKCTVIMSTVFGLMDREELAGLILQSGLNIRMQIQLHKLI 204
>gi|291519768|emb|CBK74989.1| Organic radical activating enzymes [Butyrivibrio fibrisolvens 16/4]
Length = 222
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 46/234 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M +Y + E F+++ GEG HAG +AVF R GCNL C +CDT +
Sbjct: 1 MSVYYVVEKFVSINGEGQHAGELAVFIRLRGCNL-----------ACSYCDTRWACSYEA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKR-GFEIAVET 118
+ ++ D ++ + LTGGEPL + L++A ++ +ET
Sbjct: 50 PAEQMTEVEILDYVKSTGVNR------VTLTGGEPLKARDIKDLLRAFAAEPNIKVEIET 103
Query: 119 NGTIEPPQGIDWICV----------------SPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
NG++ ++ +K V V+ +
Sbjct: 104 NGSVNIVPFAAIPNAPAFTLDYKLAGSGMEDEMDLSNFAFLQPKDSVKFVCSDVSELDKV 163
Query: 163 YIGFD------FERFSLQPMDGPFLEENTNLAISYCFQNPK--WRLSVQTHKFI 208
D + P+ G + ++Y ++ + RL +Q HKFI
Sbjct: 164 CELVDTYGLAEKCTVLISPVFGRIDPADM---VNYLIEHKRNDIRLQLQLHKFI 214
>gi|55378864|ref|YP_136714.1| hypothetical protein rrnAC2164 [Haloarcula marismortui ATCC 43049]
gi|55231589|gb|AAV47008.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 260
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T
Sbjct: 24 LPINELFQSLQGEGRLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-HD 71
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
+ VD + IEE + + VLTGGEPL+ L+ L RG+ VETNGT+
Sbjct: 72 WFTVDDVLAAIEE------YDANHVVLTGGEPLIHDSSEDLLARLTDRGYHTTVETNGTV 125
Query: 123 EPPQGIDWICVSPK 136
P ID VSPK
Sbjct: 126 VPDAPIDLASVSPK 139
>gi|193213357|ref|YP_001999310.1| radical SAM domain-containing protein [Chlorobaculum parvum NCIB
8327]
gi|193086834|gb|ACF12110.1| Radical SAM domain protein [Chlorobaculum parvum NCIB 8327]
Length = 219
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/233 (21%), Positives = 80/233 (34%), Gaps = 47/233 (20%)
Query: 1 MKL--YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M SI EIF ++QGE AG F R +GC C +CDT +
Sbjct: 1 MTTATISISEIFHSIQGESSFAGWPCAFVRLAGC-----------GHGCNYCDTTYAEEA 49
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117
G + +++ + +TGGEPLLQ +V PL+ AL +G ++ +E
Sbjct: 50 G------TAMTIDEVVRRALT---FDAPIVEVTGGEPLLQPEVYPLLSALCDKGAKVLLE 100
Query: 118 TNGTIE----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--------VSPENYIG 165
T G + P+ I + + + + L S E+Y+
Sbjct: 101 TGGFLPVNRVDPRVHTIIDIKTPSSGVAEQNCMDNIPLALASPKRFEFKIVVASEEDYLW 160
Query: 166 FDF----------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ G LA R+ +Q HK+I
Sbjct: 161 ARDFITKQGLLGKCTLIFGTVFGQLEPRL--LAEWILRDRLPVRMQLQLHKYI 211
>gi|225025886|ref|ZP_03715078.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353]
gi|224956783|gb|EEG37992.1| hypothetical protein EUBHAL_00114 [Eubacterium hallii DSM 3353]
Length = 221
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 47/234 (20%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + E F+++ GEG AG++A F R GCNL C +CDT + +
Sbjct: 1 MITYPVVEKFVSINGEGQKAGKIAAFIRMRGCNL-----------ACNYCDTSWANTKDC 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
+ ++L ++E I LTGGEPLL + PLI+AL GF + +ETN
Sbjct: 50 PCEFLSAEELITWLKEHSIEN------VTLTGGEPLLTEEIAPLIEALGTAGFSVEIETN 103
Query: 120 GT----------IEPPQGIDWICVSPKAGCDLKIKGG------QELKLV---FPQVNVSP 160
G+ P +D+ C + +K V ++ +
Sbjct: 104 GSVSLNTFDTLAHRPAFTMDYKCPDSGMENAMNTDNFSLLIPKDTVKFVVSSISDLDKAR 163
Query: 161 ENYIGF---DFERFSLQPMDGPFLEENTNLAISYCFQNPKW---RLSVQTHKFI 208
E I + + L P+ G + + Y ++ W RL +Q HKFI
Sbjct: 164 EICIQYKVAEHCPIFLSPVFGRIEPK---EIVEYMIEH-HWNEARLQLQMHKFI 213
>gi|289581999|ref|YP_003480465.1| radical SAM protein [Natrialba magadii ATCC 43099]
gi|289531552|gb|ADD05903.1| Radical SAM domain protein [Natrialba magadii ATCC 43099]
Length = 280
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T
Sbjct: 24 LPINELFYSLQGEGVLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-HA 71
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
+D + D IE + + VLTGGEPLL L++AL++RG+ VETNGTI
Sbjct: 72 WMELDAILDEIE------SHDADHVVLTGGEPLLHDASVALLEALDERGYHTTVETNGTI 125
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
ID +SPK V
Sbjct: 126 YRDAPIDLASISPKLASSTPTPERDPRSEV 155
>gi|195953034|ref|YP_002121324.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
gi|195932646|gb|ACG57346.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 212
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 49/233 (21%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKGG 63
I E+F ++QGEG G A+F RF GCNL +C +CD + TK
Sbjct: 2 INEVFYSIQGEGFLIGTPALFVRFQGCNL-----------RCVWCDEKNALDFDKTTKSY 50
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
++++ D++ + VLTGGEPLL D + + I +ETN TI
Sbjct: 51 TKAIEEIEDILAAHNPSL------IVLTGGEPLLNEDFINIFSYFKSLDKTIQIETNATI 104
Query: 123 EPPQG--------IDWICVSPK-------AGCDLKIKGGQELKLVFPQ---VNVSPENYI 164
+I +SPK L ELK+V + + Y+
Sbjct: 105 LKDDIETLFKTYARTYITLSPKYISNYIIHPKFLAFDKNIELKIVVDEHLNEGILEREYM 164
Query: 165 GFDFER--FSLQPMDG----PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E+ LQP+ FL++ LA + R+ Q HK +G++
Sbjct: 165 KPFIEKGLLILQPLWENGNVKFLDKAIKLAEKF-----NTRIIPQMHKLLGLK 212
>gi|168182488|ref|ZP_02617152.1| radical SAM domain protein [Clostridium botulinum Bf]
gi|237794898|ref|YP_002862450.1| radical SAM domain-containing protein [Clostridium botulinum Ba4
str. 657]
gi|182674381|gb|EDT86342.1| radical SAM domain protein [Clostridium botulinum Bf]
gi|229261475|gb|ACQ52508.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
Length = 221
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 82/233 (35%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F+++ GEG +G++A+F RF+GCNL C +CDT + +
Sbjct: 1 MDFKVVERFVSINGEGRRSGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVS 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + D I+ Q I + LTGGEPL+Q L + + +ETN
Sbjct: 50 YELISSKDIYDYIKSQKI------KNVTLTGGEPLMQKGIVELLKLLSKDKELYVEIETN 103
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSP 160
G + + K +K V + +
Sbjct: 104 GSVLLDEFLDIENSPRFTMDYKLPSSNMENKMALDNFRYLTNKDTVKFVSGSIEDLEKAK 163
Query: 161 ENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
E ++ + P+ G N + + + N L VQ HK I
Sbjct: 164 EIIKKYNLANTTNVYISPVFGKI---NLDTIVEFMKNNKMNGVNLQVQLHKII 213
>gi|170756011|ref|YP_001781191.1| radical SAM domain-containing protein [Clostridium botulinum B1
str. Okra]
gi|169121223|gb|ACA45059.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
Length = 221
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F+++ GEG G++A+F RF+GCNL C +CDT + +
Sbjct: 1 MDFKVVESFVSINGEGRRCGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVP 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + + I+ KE + LTGGEPLLQ L + + +ETN
Sbjct: 50 YEVLSSKDIYEYIK------SKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETN 103
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSP 160
G + + K +K V + +
Sbjct: 104 GSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAR 163
Query: 161 ENYIGF---DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E + D + P+ G N + + + N L +Q HK I
Sbjct: 164 EIINKYNLIDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213
>gi|21673157|ref|NP_661222.1| radical activating enzyme, putative [Chlorobium tepidum TLS]
gi|21646235|gb|AAM71564.1| radical activating enzyme, putative [Chlorobium tepidum TLS]
Length = 220
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 75/228 (32%), Gaps = 45/228 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+I EIF ++QGE AG F R +GC CR+CDT + G
Sbjct: 7 LNISEIFYSIQGESSFAGWPCAFVRLAGC-----------GHGCRYCDTTYA---EEPGT 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
+D++ + + +TGGEPLLQ L+ AL R + +ET G +
Sbjct: 53 AMTIDEIMHRVLA------FDAPCVEVTGGEPLLQSGTFGLLSALCDRHPVVLLETGGFL 106
Query: 123 E----PPQGIDWICVSPKAGC------------DLKIKGGQELKLVFP------QVNVSP 160
P+ I + + L E K+V
Sbjct: 107 PVDRVDPRVHAIIDIKAPSSGVMEHNCAANFTLALNEPERFEFKIVVASEADYLWAKSYI 166
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ P+ G LA R+ +Q HK+I
Sbjct: 167 AGHGILGKCSIIFGPVFGQLEPRL--LAEWMLRDRLPVRMQLQLHKYI 212
>gi|291550955|emb|CBL27217.1| Organic radical activating enzymes [Ruminococcus torques L2-14]
Length = 216
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 43/227 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F ++ GEG AG +AVF RF GCNL +C +CDT + +
Sbjct: 2 KVVEKFTSINGEGTRAGELAVFIRFKGCNL-----------RCSYCDTMWANEPDCQYKE 50
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
+++ + + E I R LTGGEPLLQ D LI L + G ++ +ETNG ++
Sbjct: 51 ETPEEILNYVLETGI------RNVTLTGGEPLLQKDIRELIHLLLQAGLQVEIETNGAVD 104
Query: 124 ---PPQGIDWICVSPKAGCDLKIKGG-----------QELKLV------FPQVNVSPENY 163
+ + K + +K V + + Y
Sbjct: 105 LSAFCEERPVFTMDYKLPSSGCEEYMITENMELLGKDDTVKFVCGSQEDLLKALDVIQTY 164
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ L P+ G + + ++ L +Q HK I
Sbjct: 165 NLTNRCHVYLSPVFGSIEP---VQIVEFMLKHQLNGVCLQIQMHKVI 208
>gi|255525616|ref|ZP_05392550.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
gi|296185503|ref|ZP_06853913.1| radical SAM domain protein [Clostridium carboxidivorans P7]
gi|255510706|gb|EET87012.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
gi|296050337|gb|EFG89761.1| radical SAM domain protein [Clostridium carboxidivorans P7]
Length = 221
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/231 (22%), Positives = 87/231 (37%), Gaps = 46/231 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ + E F+++ GEG +G++AVF RF+GCNL +C +CDT + +
Sbjct: 3 FKVVEKFISINGEGPMSGQLAVFIRFAGCNL-----------RCSYCDTLWANEKDVPYE 51
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG- 120
+N ++ + I+ + LTGGEPL+Q D L + + VETNG
Sbjct: 52 TFNAKEIYEYIKST------SIKNVTLTGGEPLMQQDIMELLKLLCEDKNLYVEVETNGS 105
Query: 121 ---------TIEPPQGIDWICVSPKAGCDLKIK------GGQELKLV------FPQVNVS 159
P +D+ S ++ + +K V +
Sbjct: 106 IAVDKFLKVENPPSLTMDYKLPSSNMENNMNMDNLKYLTKNDTVKFVAGSIEDLEKAKNI 165
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ + R + P+ G + + + N L VQ HK I
Sbjct: 166 IYIHKLVEKTRVYISPVFGKI---AMDEIVQFMLDNKMNGVNLQVQLHKII 213
>gi|257386657|ref|YP_003176430.1| radical SAM protein [Halomicrobium mukohataei DSM 12286]
gi|257168964|gb|ACV46723.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286]
Length = 258
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 23/196 (11%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG +VF R SGCNL +C FCD+ + +
Sbjct: 22 LPINELFHSLQGEGKLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPS-HA 69
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
+D++ IE + + V+TGGEPL+ + L++ L++RG+ VETNGT+
Sbjct: 70 WLTIDEIVAEIE------GYDADHVVVTGGEPLIHEETVDLLERLDERGYHTTVETNGTV 123
Query: 123 EPPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
ID VSPK + G+ + + ER+ Q
Sbjct: 124 AVDAPIDLASVSPKLASSTPTPERDPTGEGDWEQRHEQRRLDHEALATLVERYPTQLKFV 183
Query: 179 PFLEENTNLAISYCFQ 194
++ +
Sbjct: 184 VTGPDDVAEIDRTVEE 199
>gi|13541127|ref|NP_110815.1| organic radical activating protein [Thermoplasma volcanium GSS1]
gi|14324514|dbj|BAB59441.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 209
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 85/223 (38%), Gaps = 43/223 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF ++QGEG G +F R + CN +C +CDT + G +
Sbjct: 3 ITEIFHSIQGEGTLIGIPMLFVRTNVCN-----------IRCEWCDTKYSFYGGREIALS 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE- 123
++ + +EQW+ TGGEPL + + ++ K G +I +ETNGT+
Sbjct: 52 DILNIVKEAKEQWV---------CFTGGEPLVQRDALSFVEGSLKLGKKILIETNGTVPI 102
Query: 124 ---PPQGIDWICVSPKAGCDLKIKGGQE--LKLV--FPQVNVSPENYIGFDFE------- 169
+ V K+ K E LK + + + ++ DF
Sbjct: 103 RNFTISDNIVLDVDVKSPSAKVRKPFLEENLKYIRDTDYLKIVIKDREDLDFAINFIRGH 162
Query: 170 ----RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ LQP G + + + + R+ Q HK +
Sbjct: 163 RKNLNYVLQPAWGSDIRMIADAIVET---DLNVRVLPQLHKIM 202
>gi|148379522|ref|YP_001254063.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
gi|153934167|ref|YP_001383899.1| radical SAM domain-containing protein [Clostridium botulinum A str.
ATCC 19397]
gi|153937587|ref|YP_001387447.1| radical SAM domain-containing protein [Clostridium botulinum A str.
Hall]
gi|226948886|ref|YP_002803977.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
gi|148289006|emb|CAL83095.1| putative radical SAM-superfamily protein [Clostridium botulinum A
str. ATCC 3502]
gi|152930211|gb|ABS35711.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
19397]
gi|152933501|gb|ABS39000.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
gi|226841117|gb|ACO83783.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 221
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F+++ GEG G++A+F RF+GCNL C +CDT + +
Sbjct: 1 MDFKVVERFVSINGEGRRCGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVP 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + + I+ KE + LTGGEPLLQ L + + +ETN
Sbjct: 50 YEVLSSKDIYEYIK------SKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETN 103
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSP 160
G + + K +K V + +
Sbjct: 104 GSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAR 163
Query: 161 ENYIGF---DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E + D + P+ G N + + + N L +Q HK I
Sbjct: 164 EIINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213
>gi|153940843|ref|YP_001390900.1| radical SAM domain-containing protein [Clostridium botulinum F str.
Langeland]
gi|152936739|gb|ABS42237.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
gi|295318962|gb|ADF99339.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
Length = 221
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F+++ GEG G++A+F RF+GCNL C +CDT + +
Sbjct: 1 MDFKVVESFISINGEGRRCGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVP 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + + I+ KE + LTGGEPLLQ L + + +ETN
Sbjct: 50 YEVLSSKDIYEYIK------SKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETN 103
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSP 160
G + + K +K V + +
Sbjct: 104 GSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAR 163
Query: 161 ENYIGF---DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E + D + P+ G N + + + N L +Q HK I
Sbjct: 164 EIINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213
>gi|251771685|gb|EES52260.1| Radical SAM family protein [Leptospirillum ferrodiazotrophum]
Length = 213
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 43/227 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ I E F ++QGE AG F R +GC L +CR+CDT + +G +
Sbjct: 1 MMRINETFFSIQGESTFAGWPCFFIRTTGCPL-----------RCRWCDTTYSFYEGEE- 48
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
L L++E +TGGEP ++P L++ L G + +ET+G
Sbjct: 49 -----RTLDSLVDEAL---SHPAPLVEVTGGEPFSAPELPRLVEKLLDAGKTVLIETSGA 100
Query: 122 IEPPQG---IDWICVSPKAGCDLKIKGGQELKLVF----PQVNVSPENYIGFDFERFSL- 173
+ PQG + + K E ++ + FDF L
Sbjct: 101 LPVPQGLDRRCHLVMDIKPPGSGMAHLMAEETFRALRPGDEIKAVIADRGDFDFCLDFLD 160
Query: 174 ------------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA + R+ +Q HK +
Sbjct: 161 RLALPREIPVTFSPVFGECSPG--ELAEWVLSSGREIRVGIQLHKIL 205
>gi|15896859|ref|NP_350208.1| MoaA family Fe-S oxidoreductase [Clostridium acetobutylicum ATCC
824]
gi|15026725|gb|AAK81548.1|AE007858_9 Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum ATCC
824]
gi|325511033|gb|ADZ22669.1| Fe-S oxidoreductase of MoaA family [Clostridium acetobutylicum EA
2018]
Length = 221
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E F+++ GEG +G+++VF RF+GCNL C +CDT + + K
Sbjct: 1 MNYKVVEKFVSINGEGLKSGQLSVFIRFAGCNLN-----------CNYCDTKWANEKDVK 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
++ I+E + LTGGEPLLQ L + +ETN
Sbjct: 50 YTLMTEKEILSYIKET------GVKNVTLTGGEPLLQDGIVELLNLLSLDSTLRVEIETN 103
Query: 120 GTIEPPQGIDWICVS----------------PKAGCDLKIKGGQELKLVFPQVNVSPE-- 161
G++ +++ K + +K V + +
Sbjct: 104 GSVSLENFLNFKNAPSFTMDYKLPDSSMENFMKTSNFKFLNKKDVIKFVVSSLKDLKKAM 163
Query: 162 ----NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ + P+ G E + + N L +Q HK I
Sbjct: 164 DIITEFNLSKKTNIYISPVFGRISPET---IVDFMKDNKLNDVTLQIQIHKII 213
>gi|189347255|ref|YP_001943784.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
gi|189341402|gb|ACD90805.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
Length = 220
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 55/234 (23%), Positives = 84/234 (35%), Gaps = 49/234 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
SI EIF ++QGE AG F R +GC CR+CDT +
Sbjct: 1 MTISISEIFHSIQGESSFAGWPCAFVRLAGC-----------GHGCRYCDTTYA---EKP 46
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
G D++ + I+E + +TGGEPLLQ +V PL++ L R ++ +ET G
Sbjct: 47 GTEMETDEIFEKIDEI------GAQLVEITGGEPLLQKEVYPLMERLCDRKEKVLLETGG 100
Query: 121 T-----IEPPQGIDWICVSPKAGCDLKIKGGQ---------------ELKLVFPQVNVSP 160
++ +P +G K E K+V
Sbjct: 101 FLSVAKVDQRVHKIIDLKAPSSGVCNKNNPQNIELAMRSGKAEISSFEFKIVVADREDYL 160
Query: 161 E------NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + L + G E LA + R+ +Q HK+I
Sbjct: 161 WARTMLTDTGLAEACTVMLGVVFGKLEPE--RLAQWILEDRIRVRMQLQLHKYI 212
>gi|282889934|ref|ZP_06298469.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500127|gb|EFB42411.1| hypothetical protein pah_c008o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 224
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 43/226 (19%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+I EIF ++QGE AG F R + CNL +C +CDT + +G G
Sbjct: 13 LNIIEIFSSVQGETSFAGLPTAFIRLAACNL-----------RCSWCDTSYSFGRGDVFG 61
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
+ Q+ + ++E R +TGGEPLLQ +V PL+ L + + ++VET G++
Sbjct: 62 ---LPQILEKVDE------FGCRNVCVTGGEPLLQKNVYPLMTQLCDKNYIVSVETGGSL 112
Query: 123 EPPQGID-------WICVSPKAGCDLKIKG------GQELKLVFP-QVNVSPENYIGFDF 168
+ C E+K V + + F
Sbjct: 113 SIEEIDPRVHIILDIKCPDSNMSDRNFWPNLSAIRPEDEVKFVINGYQDYLYAKEVCEKF 172
Query: 169 ERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ FS L P+ + L RL++Q HKFI
Sbjct: 173 QLFSRKIPVLLSPVFDVLDSK--ELVNWVLQDKLPVRLNMQLHKFI 216
>gi|261855156|ref|YP_003262439.1| radical SAM protein [Halothiobacillus neapolitanus c2]
gi|261835625|gb|ACX95392.1| Radical SAM domain protein [Halothiobacillus neapolitanus c2]
Length = 227
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 42/225 (18%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF +LQGE AG VF R +GC L +C +CDT + G
Sbjct: 18 LRITEIFRSLQGESESAGWPTVFVRLTGCPL-----------RCVYCDTAYAFT---GGE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
R ++ + D + + +TGGEPL Q +PL+ +L G +++ET+G +
Sbjct: 64 RLSLLSILDQVAA------YHTQDVCVTGGEPLAQPACLPLLTSLCDAGHLVSLETSGAL 117
Query: 123 EPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVF---PQVNVSPENYIGF 166
+ S + + E+K V + ++ F
Sbjct: 118 SIEGVDPRVRVVMDLKTPSSGEAEKNRFENIDLLKTSDEIKFVIGSAEDFKWAVQHVRQF 177
Query: 167 DFERFS---LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ + P+ G LA + R Q HK I
Sbjct: 178 QMDKRFNVLISPVFGQVTP--LALADWILESGLRLRFQQQLHKLI 220
>gi|320353477|ref|YP_004194816.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
DSM 2032]
gi|320121979|gb|ADW17525.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
Length = 223
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 49/227 (21%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ E F ++QGE AG +F R +GCNL +C +CD + + G
Sbjct: 8 VCERFYSIQGESTRAGLPCLFVRLAGCNL-----------RCSYCDARYTWEET--GETM 54
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP 124
VD++ E+ G +TGGEPL Q V PL++ L G + +ETNG++
Sbjct: 55 TVDEILAWAEQ------YPGVMVEVTGGEPLRQNGVYPLMRNLLAAGLTVLLETNGSLPL 108
Query: 125 PQGIDWICVSPKAGCDL-------------------KIKGGQELKLVFPQVNVSPENYIG 165
+ + + C + + E+K V V+
Sbjct: 109 CGVPEEVGIVMDIKCPDSGMAAHNLADNLDLLRERARRQCRDEIKFVLSSVDDFHWARQV 168
Query: 166 FDFERF------SLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTH 205
ER P+ L + RL +Q H
Sbjct: 169 VTRERLDRLLPVLFSPVRPLLDP---ALLAQLLLDHRLNVRLQLQLH 212
>gi|302876981|ref|YP_003845614.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|307687672|ref|ZP_07630118.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|302579838|gb|ADL53850.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
Length = 220
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 85/232 (36%), Gaps = 46/232 (19%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y + E F+++ GEG AG +AVF RF GCNL C +CDT +
Sbjct: 1 MYKVVEKFVSINGEGLRAGELAVFIRFLGCNLK-----------CSYCDTKWANEPECPY 49
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRG-FEIAVETNG 120
+ +++ I+E R LTGGEPL+Q LI L K G I +ETNG
Sbjct: 50 ELMSGEEIYAYIKET------GVRNVTLTGGEPLIQKEMKELIDLLLKDGLLRIEIETNG 103
Query: 121 TIE-----PPQGIDWICVSP--KAGCDLKIKGGQELKLVFPQVNVS-------------- 159
+++ I + K+ KL+ + +V
Sbjct: 104 SVDVQQINYSSERVSITLDYKGKSSLMEGYMKRDSFKLLTKKDSVKFVVGDNEDLERALS 163
Query: 160 -PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ + + + + N + R+ +Q HK+I
Sbjct: 164 FIKECELLEKTNVLFSCIFDKIQP---AEVVEFMKNNKLIEARIQLQLHKYI 212
>gi|293376550|ref|ZP_06622778.1| radical SAM domain protein [Turicibacter sanguinis PC909]
gi|325839435|ref|ZP_08166874.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Turicibacter sp. HGF1]
gi|292644776|gb|EFF62858.1| radical SAM domain protein [Turicibacter sanguinis PC909]
gi|325490555|gb|EGC92871.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Turicibacter sp. HGF1]
Length = 222
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 48/234 (20%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+Y + E F+++ GEG AG++A F RF CNL +C +CDT + +G
Sbjct: 1 MYQVIEKFISIDGEGPCAGQLAAFIRFKNCNL-----------RCDWCDTCYSYDGSVEG 49
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
+ ++ ++E + + LTGGEPL+Q + + + I +ETNG
Sbjct: 50 ENLSPLEIYHFVKENKVN------HVTLTGGEPLIQPQIEVLIGILAADKELTIHIETNG 103
Query: 121 TIEPPQGIDWICVS---------PKAGCDLKIKGGQELKLV---------------FPQV 156
++ + S + K V
Sbjct: 104 SVNIQRFKKKFSKSNVVFILDYKLPNSLMQSRMDDENFKWVTKTDVYKFVIASQEDLKVA 163
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + P+ N +L + Y + RL +Q HK+I
Sbjct: 164 HEVIREQGLLERCLVYFSPV---VDYINPSLIVDYMKDHQLNDVRLQLQLHKYI 214
>gi|16120216|ref|NP_395804.1| hypothetical protein VNG6305C [Halobacterium sp. NRC-1]
gi|169237476|ref|YP_001690680.1| hypothetical protein OE5197R [Halobacterium salinarum R1]
gi|10584342|gb|AAG20939.1| Vng6305c [Halobacterium sp. NRC-1]
gi|167728703|emb|CAP15547.1| hypothetical protein OE5197R [Halobacterium salinarum R1]
Length = 257
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T
Sbjct: 20 LPINELFYSLQGEGKLAGTPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-HA 67
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI 122
+VD + ++ + VLTGGEPLL D + + L G+ VETNGTI
Sbjct: 68 TMSVDDIIAEVQSYE-----HADHVVLTGGEPLLHDDAVVLLDRLAALGYHTTVETNGTI 122
Query: 123 EPPQGIDWICVSPK 136
ID VSPK
Sbjct: 123 HRDAPIDLASVSPK 136
>gi|310825117|ref|YP_003957475.1| radical sam domain-containing protein [Stigmatella aurantiaca
DW4/3-1]
gi|309398189|gb|ADO75648.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 230
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 43/223 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+KEI+L++QGE HAG + F R +GC+L +C +CD++F G R
Sbjct: 21 VKEIYLSVQGESSHAGLLCAFVRLTGCHL-----------RCTYCDSEFAFR---GGTRM 66
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
Q+ + ++ +TGGEPLLQ V PL++AL G + +ET+G I+
Sbjct: 67 PNAQVVEQVKALRT------PMVEITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAIDV 120
Query: 124 ------PPQGIDWICVSPKAGCDLKIKGG------QELKLVFPQVNVSPENYIGFDFERF 171
+ +D S ++ E+K V +
Sbjct: 121 RLVPPAVHKIVDMKTPSSGESDRNDVRNFSSMNARDEMKFVIGSREDYEWSKALIAEHGL 180
Query: 172 -------SLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
+ LA R +Q HK+
Sbjct: 181 ATKPFAMLFSTVFDKLHPR--ELAEWVIADRLPVRFQLQMHKY 221
>gi|225848024|ref|YP_002728187.1| organic radical activating enzyme [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644046|gb|ACN99096.1| organic radical activating enzyme [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 217
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 40/227 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF T++GEG G VF R GCNL +C +CDT + G
Sbjct: 9 TFKVVEIFRTVEGEGRWVGLPVVFIRLEGCNL-----------RCSWCDTTY----SYDG 53
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGT 121
Y V L ++++E + +TGGEP L L+++L + + +ETNGT
Sbjct: 54 KTYTVKTLEEILKE---VSTYNLKRVCITGGEPFLTSNLDILVKSLLDEDYYVFIETNGT 110
Query: 122 IEPPQ------GIDWICVSPKAGCDLKIK----GGQELKLVFPQ-----VNVSPENYIGF 166
+ + +I SPK K +ELK V + + P+
Sbjct: 111 LWNERFKDLNLDRLYITCSPKPPFYFVNKDLIPYIKELKFVVDENLSLNHIIKPDFIDII 170
Query: 167 DFERFSLQPMDGPFLEENTNLAISYCFQNP----KWRLSVQTHKFIG 209
+ LQP E A++ Q + R+ Q HK +G
Sbjct: 171 KSDIIVLQPESNK--PEMVKKALNLQDQLLQLGIESRIIPQCHKVLG 215
>gi|322434490|ref|YP_004216702.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
gi|321162217|gb|ADW67922.1| Radical SAM domain protein [Acidobacterium sp. MP5ACTX9]
Length = 227
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 83/235 (35%), Gaps = 54/235 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E++ ++QGE G +F RF+GCNL +C +CD+++ G +
Sbjct: 5 ELYKSVQGESSFTGLPCIFVRFAGCNL-----------RCAWCDSEYTFT---GGNPFTQ 50
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE-- 123
+++ IE + TGGEP+L +PL+ L +G+ + +ET+G
Sbjct: 51 EEVIAQIEALAP-----CKLVEFTGGEPMLHAKELLPLMDVLLTQGYTLMMETSGERPLD 105
Query: 124 --PPQGIDWICV----------SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER- 170
P + V S + + E+K V E F E
Sbjct: 106 LVPKAVHKIVDVKCPGAGAAANSFRLSNLETLTKNDEVKFVLTNR-ADYEFARAFIAEHR 164
Query: 171 -------FSLQPMDGPF------LEENT----NLAISYCFQNPKWRLSVQTHKFI 208
L P +E T L RLS+Q HKFI
Sbjct: 165 LNDLAAGVLLSPAFTKNPSPLRTVENATLDPRTLVEWMMHDGVDARLSLQIHKFI 219
>gi|291522438|emb|CBK80731.1| Organic radical activating enzymes [Coprococcus catus GD/7]
Length = 223
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 47/233 (20%), Positives = 74/233 (31%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ Y + E F+++ GEG AG++AVF RF GCNL C +CDT +
Sbjct: 3 RTYEVVEHFVSINGEGPLAGQLAVFVRFKGCNLS-----------CLYCDTKWANEPDVP 51
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
+++ I E R LTGGEPL + + L + + +ETN
Sbjct: 52 ARVMTAEEIHQAIMET------GVRNVTLTGGEPLDRPHISELLEKLAADHSLHVEIETN 105
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGGQ--------ELKLV---------FPQVN 157
G + K C E V +
Sbjct: 106 GSVSLAPFVNIPNRPSFTMDYKLSCSGMETAMDTDNFSLLTEKDTVKFVTGSLADCERAV 165
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + P+ G + + + + L +Q HK I
Sbjct: 166 EIMKQFRLIGRCHLYFSPVFGSIDPAD---IVEFMKEQQLNGVNLQIQMHKVI 215
>gi|239906320|ref|YP_002953061.1| hypothetical protein DMR_16840 [Desulfovibrio magneticus RS-1]
gi|239796186|dbj|BAH75175.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 210
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 77/226 (34%), Gaps = 44/226 (19%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF ++QGE +AG F R SGCNL CR+CDT G
Sbjct: 1 MLKVHEIFASIQGESSYAGWPCGFLRLSGCNL-----------ACRWCDTLHA------G 43
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGT 121
Y +AD +TGGEPLL P L++ L + VETNG+
Sbjct: 44 DSYAEMTVADATAAL---AGLGLPLVEVTGGEPLLAPQTPELVKRLCDLDLTVLVETNGS 100
Query: 122 IEPPQGIDWICVSPKA-------------GCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+ G +++ E+K V + + ++
Sbjct: 101 FDIAVLDARATAVVDVKCPGSGMEHRNDYGNLERLRPHDEVKFVL--ADRTDYDFALDIA 158
Query: 169 ERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P+ LA + RL +Q HK I
Sbjct: 159 SRIWRTHIVHFSPVAATLASA--ELAAWMVADRVQARLGLQLHKHI 202
>gi|170758709|ref|YP_001786976.1| radical SAM domain-containing protein [Clostridium botulinum A3
str. Loch Maree]
gi|169405698|gb|ACA54109.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 221
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 81/233 (34%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F+++ GEG G++A+F RF+GCNL C +CDT + +
Sbjct: 1 MDFKVAERFVSINGEGRRCGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVP 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + + I+ KE + LTGGEPLLQ L + + +ETN
Sbjct: 50 YEVLSSKDIYEYIK------SKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETN 103
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSP 160
G + + K +K V + +
Sbjct: 104 GSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAR 163
Query: 161 ENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E +D + P+ G N + + + N L +Q HK I
Sbjct: 164 EIINRYDLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213
>gi|197303437|ref|ZP_03168476.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC
29176]
gi|197297435|gb|EDY31996.1| hypothetical protein RUMLAC_02159 [Ruminococcus lactaris ATCC
29176]
Length = 221
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 48/232 (20%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F+++ GEG AG +AVF RF GCNL C +CDT +
Sbjct: 2 KVVEKFISINGEGRRAGELAVFIRFKGCNLN-----------CSYCDTKWANEPACDYEE 50
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
+ D + + + E I + LTGGEPLLQ D+ + + LNK + +ETNG +
Sbjct: 51 LSPDDICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAV 104
Query: 123 EPPQGIDWIC---VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF------------- 166
+ + +S L G +E ++ + ++ + F
Sbjct: 105 DIAPLANAFSKEKLSLTMDYKLPSSGCEEKMILSNMEVLRKQDTVKFVSGSVKDLECAEK 164
Query: 167 --------DFERFSLQPMDGPFLEENTNLAISYC--FQNPKWRLSVQTHKFI 208
+ + + P+ G +++ + RL +Q HK I
Sbjct: 165 IIGKFHLTERCQVFISPVFGSIEP---VEIVNFMTSKRMNDVRLQIQMHKVI 213
>gi|283853629|ref|ZP_06370864.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
gi|283570991|gb|EFC19016.1| Radical SAM domain protein [Desulfovibrio sp. FW1012B]
Length = 211
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/227 (23%), Positives = 77/227 (33%), Gaps = 44/227 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF ++QGE AG F R SGCNL C +CDT +
Sbjct: 1 MSLRVHEIFASIQGESSFAGWPCAFLRLSGCNLD-----------CVWCDTRYA------ 43
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
+ + + LTGGEPLL ++P L +AL G + VETNG
Sbjct: 44 AASFVEMTVPEA---AAALLASGLPLVELTGGEPLLAPELPALARALLDAGATVLVETNG 100
Query: 121 TIEP-------PQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFD 167
+ + +D C + E+K V + +
Sbjct: 101 SRDIAVLDPRAIAILDIKCPGSGMEGRNDYRNLDRLRPRDEVKFVLAGRD--DYRFALDV 158
Query: 168 FERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+R L P+ G LA + RL +Q HK I
Sbjct: 159 AKRVWDRHTVHLSPVTGSLDPA--ELAGWMVADRVRARLGLQLHKTI 203
>gi|124516513|gb|EAY58021.1| putative radical SAM family protein [Leptospirillum rubarum]
gi|206603410|gb|EDZ39890.1| Putative radical activating enzyme [Leptospirillum sp. Group II
'5-way CG']
Length = 212
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 72/225 (32%), Gaps = 43/225 (19%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E F ++QGE ++G F R +GC L +CR+CDT + G
Sbjct: 2 KITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFY---GGEE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
VD L +TGGEP +Q L Q L G + +ET+G
Sbjct: 48 RTVDSLV------GEAVSSGTSLVEITGGEPFVQPELPELCQKLLDLGKTVLIETSGGFP 101
Query: 124 PPQGIDWIC---VSPKAGCDLKIKGG-----------QELKLVFPQVNVSPENYIGFDFE 169
P G++ C V K E+K V + +
Sbjct: 102 VPSGLNRECRLIVDLKPPGSGMEDWMKAENFAELGTEDEIKAVLTGREDFDWSVQKLEEW 161
Query: 170 RFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA R+ +Q HK +
Sbjct: 162 GIWGRVPVTFSPVFGECDPR--ELARWVLDSGLPVRVQIQLHKIL 204
>gi|320108730|ref|YP_004184320.1| Radical SAM domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319927251|gb|ADV84326.1| Radical SAM domain protein [Terriglobus saanensis SP1PR4]
Length = 229
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 87/236 (36%), Gaps = 54/236 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E++ ++QGE G +F R +GCNL +C +CD+++ + G +
Sbjct: 5 ELYKSVQGESSFTGMPCIFVRSAGCNL-----------RCAWCDSEYTF---SGGTPFTE 50
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK--RGFEIAVETNGTIE 123
D++ IE R TGGEP+L +PL++ L RG+ + +ET+G
Sbjct: 51 DEIVAQIEALAP-----CRLIEFTGGEPMLHAKELLPLMRRLLADPRGYTLMMETSGERP 105
Query: 124 ----PPQGIDWICV----------SPKAGCDLKIKGGQELKLVFPQ-------VNVSPEN 162
P + V S + + E+K V + E+
Sbjct: 106 LQDVPTAVHKIVDVKCPGAGSAFGSFRMSNLDILTQRDEVKFVLRDRVDYEFARDFIREH 165
Query: 163 YIGFDFERFSLQPMDGP-----FLEENTNL----AISYCFQN-PKWRLSVQTHKFI 208
+ L P +N L + + + RLS+Q HKFI
Sbjct: 166 SLNEKAGGILLSPAFIKVPSILRSADNMELDARHLVDWMLADGLDARLSLQVHKFI 221
>gi|328953829|ref|YP_004371163.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
gi|328454153|gb|AEB09982.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
Length = 213
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 81/227 (35%), Gaps = 42/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ E F+++ GE AG F R SGCNL +CR+CDT + +G +
Sbjct: 1 MALRVCETFISIMGEASFAGLPGFFIRLSGCNL-----------RCRYCDTTYAYAEGVE 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
++ G R ++TGGEPLLQ + + + AL +RGF + +ETNG
Sbjct: 50 RSLASL---------LGEAGASGYRLVLVTGGEPLLQEECLVLLSALVERGFTVLLETNG 100
Query: 121 TIEPPQGIDWI-------CVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFD 167
+ + C +K ELK V
Sbjct: 101 SRPLEAVDPRVHRIIDLKCPGSGMAQHNYLKNLDYLTEKDELKFVVSNRRDFDWAMQVMA 160
Query: 168 FERFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R P+ G LA RL++Q HK+I
Sbjct: 161 ASRIWERCTVLFSPVFGLLPPS--ELAAWILATRLPLRLNLQLHKYI 205
>gi|70607340|ref|YP_256210.1| hypothetical protein Saci_1604 [Sulfolobus acidocaldarius DSM 639]
gi|68567988|gb|AAY80917.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
Length = 211
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 41/231 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y I EIF ++QGEG G + F R +GC+ +C +CDT + +
Sbjct: 1 MKYWIIEIFTSIQGEGEVIGTPSNFVRLAGCH-----------MRCIWCDTKYSWHK-YD 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G ++ ++ I + +TGGEPLLQ +PL + L K I VET+GT
Sbjct: 49 GKELSIQEIISKI-------NVSVKTTTITGGEPLLQDIIPLAEELKKLEQRIVVETSGT 101
Query: 122 IEPPQG----IDWICVSPKAGCDLKIKGGQ--------ELKLVFPQVNVSPENYIGF--- 166
I+P Q +D VSPK K V I F
Sbjct: 102 IKPNQKLMELVDVFSVSPKLSNAGYRLKYNFKDDDWATYYKFVIVNPKTDIPEVIKFVEE 161
Query: 167 ---DFERFSLQPMDGPFLE--ENTNLAISYCFQ-NPKWRLSVQTHKFIGIR 211
D + LQP DG + + ++R+ Q H+ I R
Sbjct: 162 NRIDHRKVLLQP-DGRRNDYVNALKELADSVMEFGVQFRVLPQLHRIISYR 211
>gi|284164674|ref|YP_003402953.1| radical SAM protein [Haloterrigena turkmenica DSM 5511]
gi|284014329|gb|ADB60280.1| Radical SAM domain protein [Haloterrigena turkmenica DSM 5511]
Length = 274
Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG +VF R SGCNL +C FCD+ + T
Sbjct: 33 LPINELFYSLQGEGTLAGVPSVFVRTSGCNL-----------RCWFCDSYHTSWEPT-HA 80
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
++++ IE + + VLTGGEPL+ + L++AL+ RG+ VETNGTI
Sbjct: 81 WLGLEEILAEIE------SHDADHVVLTGGEPLIHEESVALLEALDDRGYHTTVETNGTI 134
Query: 123 EPPQGIDWICVSPK 136
ID +SPK
Sbjct: 135 NRDAPIDLASISPK 148
>gi|238921904|ref|YP_002935418.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC
27750]
gi|238873576|gb|ACR73284.1| queuosine biosynthesis protein QueE [Eubacterium eligens ATCC
27750]
Length = 221
Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 53/229 (23%), Positives = 88/229 (38%), Gaps = 42/229 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F+++ GEG G +AVF RF GCNL C +CDT +
Sbjct: 2 KVVEKFISINGEGRRTGELAVFIRFKGCNLN-----------CSYCDTKWANEPACDYEE 50
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTI 122
+ D++ + + E I + LTGGEPLLQ D+ + + LNK + +ETNG +
Sbjct: 51 LSPDEICEYVSETGI------KNVTLTGGEPLLQKDIRSLVEKLLNKSDIRVEIETNGAV 104
Query: 123 EPPQGIDWICVS----------PKAGCDLKI--------KGGQELKLV---FPQVNVSPE 161
+ + P +GC+ K+ + +K V + + +
Sbjct: 105 DIAPLANAFSKEKLSLTMDYKLPSSGCEEKMLLSNMEVLRKQDTVKFVSGSINDLECAEK 164
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYC--FQNPKWRLSVQTHKFI 208
F + F +++ + RL +Q HK I
Sbjct: 165 IIEKFHLTERCQVFISSVFGSIEPVEIVNFMTSKRMNDVRLQIQMHKVI 213
>gi|196230866|ref|ZP_03129727.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
gi|196225207|gb|EDY19716.1| Radical SAM domain protein [Chthoniobacter flavus Ellin428]
Length = 231
Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF ++QGEG G +VF R SGCNL +CR+CDT + G
Sbjct: 3 ISEIFYSIQGEGELTGVPSVFVRTSGCNL-----------RCRWCDTKYASWNPQ-GDEM 50
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
++ ++ ++ + VLTGGEP++ L Q + G I +ET GTI P
Sbjct: 51 SIAEIFARVDA------FPATHVVLTGGEPMVAKGIHELAQRFREAGKHITIETAGTIAP 104
Query: 125 PQGIDWI-CVSPKAGCD--------LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
+ +SPK G + E + P+V + F + Q
Sbjct: 105 EGIACDLASLSPKLGNSTPLEGEIAEGWRERHEKARLQPEVLRAWIERHPFQLKFVVEQ- 163
Query: 176 MDGPFLEENTNL 187
+EE L
Sbjct: 164 --SSDVEEIEAL 173
>gi|167768058|ref|ZP_02440111.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1]
gi|317498354|ref|ZP_07956650.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|167710387|gb|EDS20966.1| hypothetical protein CLOSS21_02602 [Clostridium sp. SS2/1]
gi|291561057|emb|CBL39857.1| Organic radical activating enzymes [butyrate-producing bacterium
SSC/2]
gi|316894359|gb|EFV16545.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
Length = 222
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 46/232 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M+ + + E F+++ GEG AGR+A+F R GCNL C +CDT + +
Sbjct: 1 METFKVVETFVSINGEGKKAGRLAMFIRLKGCNLN-----------CSYCDTTWANKRDA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
+ Q+ + I+E LTGGEPLL + + L EI +ET
Sbjct: 50 RCELLTAPQIVERIKEA------GVELVTLTGGEPLLDENVSELIGSILMMPKVEIEIET 103
Query: 119 NGTIEP----------PQGIDWICVSPKAGCDLKIKGGQELKL---------VFPQVNVS 159
NG++ +D+ S ++ ++ + LK +N +
Sbjct: 104 NGSVPIRYYKERDNRLTMTMDYKLPSSNMEENMCLENMEYLKPWDVVKFVIGSREDLNRA 163
Query: 160 PENYIGFDFER---FSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHK 206
E F P+ G E + + +N K R +Q HK
Sbjct: 164 KEIIERFRLCEKAIVYFSPVFGKIEPE---EIVEFMKENKLNKVRFQIQIHK 212
>gi|294828448|ref|NP_714217.2| organic radical activating enzyme [Leptospira interrogans serovar
Lai str. 56601]
gi|293386302|gb|AAN51235.2| organic radical activating enzyme [Leptospira interrogans serovar
Lai str. 56601]
Length = 237
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 81/234 (34%), Gaps = 40/234 (17%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
S+ EI+L+L GEG G +F R +GC+L G R +CDT + + G
Sbjct: 7 SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKL----WCDTPYA-LSPKAGEE 61
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--------IQALNKRGF--EI 114
+V+Q+ D I+E +LTGGEPL + + N GF
Sbjct: 62 MSVNQVLDKIQELSAVN----IQILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 117
Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCDLKIKGGQ--------ELKLVFPQVNVSPENYIG 165
VETNG + K E K ++ +
Sbjct: 118 RVETNGAESIEGMDQFVFTLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVIRDKND 177
Query: 166 FDFE-----------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
F+ P+ G E I Y RLS+QTHK+I
Sbjct: 178 FERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 230
>gi|310780054|ref|YP_003968386.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
gi|309749377|gb|ADO84038.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
Length = 222
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 52/234 (22%), Positives = 81/234 (34%), Gaps = 47/234 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
Y + E F+++ GEG +G +AVF R +GCNL +C +CDT +
Sbjct: 1 MNYKVVETFVSINGEGKKSGELAVFIRLAGCNL-----------RCSYCDTMWANQDDVV 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ +++ D I+ +T LTGGEPL+Q + L I VETN
Sbjct: 50 FKSMSKEEIYDYIKSTGVTN------VTLTGGEPLIQEGVGELIDYLLTDEKLCIEVETN 103
Query: 120 G------TIEPPQGIDWICVSPKAGCDLKIKG-----------GQELKLV------FPQV 156
G + + K L + +K V +
Sbjct: 104 GSVAIQKFRKNHGRRLSFTMDYKGSSSLMEEKMLLKNFETLTEHDTVKFVVGNEYDLSKA 163
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
+ Y + P+ E + + N K RL +Q HK I
Sbjct: 164 KDLIDKYHLTEVCHVFFSPIYKEIEGET---IVEFMKTNKLNKVRLQIQLHKII 214
>gi|168180208|ref|ZP_02614872.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
gi|182669011|gb|EDT80987.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
Length = 221
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E F+++ GEG G++A+F RF+GCNL C +CDT + +
Sbjct: 1 MDFKVVERFVSINGEGRCCGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVS 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + + ++ KE + LTGGEPLLQ L + + +ETN
Sbjct: 50 YEVLSSKDIYEYVK------SKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETN 103
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSP 160
G + + K +K V + +
Sbjct: 104 GSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAR 163
Query: 161 ENYIGF---DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E + D + P+ G N + + + N L +Q HK I
Sbjct: 164 EIINKYNLVDKTNVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213
>gi|45659043|ref|YP_003129.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|45602289|gb|AAS71766.1| Fe-S oxidoreductase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
Length = 243
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 81/234 (34%), Gaps = 40/234 (17%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
S+ EI+L+L GEG G +F R +GC+L G R +CDT + + G
Sbjct: 13 SVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKL----WCDTPYA-LSPKAGEE 67
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--------IQALNKRGF--EI 114
+V+Q+ D I+E +LTGGEPL + + N GF
Sbjct: 68 MSVNQVLDKIQELSAVN----IQILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRP 123
Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCDLKIKGGQ--------ELKLVFPQVNVSPENYIG 165
VETNG + K E K ++ +
Sbjct: 124 RVETNGAESIEGMDQFVFTLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVIRDKND 183
Query: 166 FDFE-----------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
F+ P+ G E I Y RLS+QTHK+I
Sbjct: 184 FERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSL-GSGLRLSIQTHKYI 236
>gi|86359303|ref|YP_471195.1| organic-radical-activating protein [Rhizobium etli CFN 42]
gi|86283405|gb|ABC92468.1| organic-radical-activating protein [Rhizobium etli CFN 42]
Length = 242
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 49/243 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T+QGEG G VF R GC+ +C +CD+ + +
Sbjct: 5 TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLYA-VDSAF 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ + + +E L+GG P +Q PLI+ + +G+ A+ET G+
Sbjct: 53 RDQWLPMSVEAIWQEVTKLSGGNPLTVSLSGGNPAIQPLRPLIELGHSKGYRFALETQGS 112
Query: 122 --IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENY 163
+ +D + +SPK ++ +F V+ +
Sbjct: 113 VAQNWFRDLDVLVLSPKPPSSGMHTDWDQVDNCVRLSAGGPEIALKVVIFDDVDYAFARE 172
Query: 164 IGFDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
+G + LQP + P +E+ + I W R+ Q H
Sbjct: 173 VGQRYPYIPLYLQPGNHTPPPSEDEDARIDIDGVMDRMHWLVDKVTVDRWFAPRVLPQLH 232
Query: 206 KFI 208
+
Sbjct: 233 VLL 235
>gi|206603340|gb|EDZ39820.1| Putative radical activating enzyme [Leptospirillum sp. Group II
'5-way CG']
Length = 212
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 77/225 (34%), Gaps = 43/225 (19%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E F ++QGE ++G F R +GC L +CR+CDT + G
Sbjct: 2 KITETFRSIQGESRYSGWPCFFIRTTGCPL-----------RCRWCDTTYSFY---GGEE 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
VD L +TGGEP +Q ++P L Q L RG + +ET+G
Sbjct: 48 RTVDSLV------GEAVSSGTSLVEITGGEPFVQPELPALCQKLLDRGKTVLIETSGGFS 101
Query: 124 PPQGID-----WICVSPKAGCDLKIKG---------GQELKLVFPQVNVSPENYIGFDFE 169
P G++ + + P E+K V + + +
Sbjct: 102 VPSGLNRQCRLIVDLKPPGSGMEAWMKAENFAELGGEDEIKAVLAGRDDFDWSVQKLEEW 161
Query: 170 RFS------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA R+ VQ HK +
Sbjct: 162 GVWGRVPVTFSPVFGECDPR--ELARWVLDSGLPIRIQVQLHKIL 204
>gi|323465121|gb|ADX77274.1| coenzyme PQQ synthesis-like protein [Staphylococcus
pseudintermedius ED99]
Length = 237
Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 34/207 (16%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + + +++ + G + ++GG P L++ + A+ET
Sbjct: 49 SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIRTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-------NYIGFDFE 169
G + I+ + +SPK + L V Q+++S + +DF
Sbjct: 109 QGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRINLKVVVFDDADYDFA 168
Query: 170 R----------FSLQPMDGPFLEENTN 186
+ F LQ + P+LEE+
Sbjct: 169 KMIHQRYPDIPFYLQ-VGNPYLEEHVE 194
>gi|325107837|ref|YP_004268905.1| radical SAM protein [Planctomyces brasiliensis DSM 5305]
gi|324968105|gb|ADY58883.1| Radical SAM domain protein [Planctomyces brasiliensis DSM 5305]
Length = 241
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF ++QGEG + G +VF R SGCNL +C FCDT + +
Sbjct: 14 TSLFISEIFASIQGEGCYTGTPSVFVRTSGCNL-----------RCHFCDTPYASWNP-E 61
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
G ++ + + E W + VLTGGEP++ + L AL ++ I +ET G
Sbjct: 62 GETLSIADIVARVNEWW------HPHVVLTGGEPMMVRDLAELTSALKRQDRFITIETAG 115
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T+ D + +SPK
Sbjct: 116 TVYQDIEADLMSISPKRANSTPTDHPD 142
>gi|300712358|ref|YP_003738172.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
gi|299126041|gb|ADJ16380.1| Radical SAM domain protein [Halalkalicoccus jeotgali B3]
Length = 251
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 84/213 (39%), Gaps = 32/213 (15%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG AG + F R SGCNL +C FCD+ + G
Sbjct: 17 LPINELFHSLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSYHTSWEP-AGD 64
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
++ + + IE + + VLTGGEPLL L++ L +RG+ VETNGTI
Sbjct: 65 WMGMEAILEGIE------DHGADHVVLTGGEPLLHDASSELLERLAERGYHTTVETNGTI 118
Query: 123 EPPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
P +D VSPK K G+ + + ER+ Q
Sbjct: 119 VPDAPVDLASVSPKLASSTPTPEKDPKGEGEWEERHEARRIDYEALATICERYDHQLKFV 178
Query: 179 PFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E+ + R+ GIR
Sbjct: 179 VTGREDMGEITD-LLARLRERV--------GIR 202
>gi|167747133|ref|ZP_02419260.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662]
gi|167654093|gb|EDR98222.1| hypothetical protein ANACAC_01846 [Anaerostipes caccae DSM 14662]
Length = 222
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M+++ I E F+++ GEG AGR+++F R GCNL C +CDT + +
Sbjct: 1 MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNLN-----------CSYCDTKWAISKKG 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
+ +++ +++E LTGGEPLL ++ + L+ E+ +ET
Sbjct: 50 EAELMTAAEVSQMVKE------SGVDLVTLTGGEPLLDENISGLIGSILSLPKMELEIET 103
Query: 119 NGTIEPPQ----------GIDWICVSPKAGCDLKIKGGQELKL------------VFPQV 156
NG+I +D+ S + ++ +ELK +
Sbjct: 104 NGSIPIRPWRERDARLSMTMDYKLPSSGMEESMCLENMEELKPWDVVKFVIGTREDLEKA 163
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHK 206
E + + P+ G + + + ++ K R +Q HK
Sbjct: 164 KEVIERFSLCEKAIVYFSPVFGAIPP---DEIVEFMKEHRMNKVRFQIQIHK 212
>gi|168704078|ref|ZP_02736355.1| radical activating enzyme [Gemmata obscuriglobus UQM 2246]
Length = 242
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 43/224 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EI+L++QGE AG VF R S C+ ++CR+CDT QGT+ R
Sbjct: 33 VHEIYLSVQGESTFAGLPCVFVRTSVCD-----------SRCRWCDTPHAFTQGTRVPRA 81
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEP 124
V +TGGEPLLQ D +PL+ L G + +ET+G +
Sbjct: 82 EV---------LGKVLSFGCPLVEITGGEPLLQPDVLPLMSELCAAGKTVLLETSGAHDV 132
Query: 125 PQGIDWI-------CVSPKAGCDLKIKGGQELKL-------VFPQVNVSPE----NYIGF 166
+ C + + LK + + +
Sbjct: 133 SAVDPRVHIIMDVKCPASGESHRNRWANFDALKPTDQIKFVIASRADWDWAVGVIRAHKL 192
Query: 167 DFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
D L + F + + + + + R+ +Q HK+I
Sbjct: 193 DERFACL--VSCVFSDLKPVELVGWLLASGLHRVRMQLQMHKYI 234
>gi|325678494|ref|ZP_08158109.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ruminococcus albus 8]
gi|324109805|gb|EGC04006.1| putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ruminococcus albus 8]
Length = 222
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 39/229 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+L+S+ E F+++ GEG AG +A+F RF+GC+L +C +CDT + +
Sbjct: 3 QLFSLAEHFISINGEGQRAGELALFLRFTGCDL-----------RCVWCDTLWAVPKDAP 51
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
++ L D+ + R LTGGEPL+Q V L +AL G + +ETNG
Sbjct: 52 HKDKDLRSLLDIARDAV---SHGVRNVTLTGGEPLMQKGIVRLFEALLDMGLRVEIETNG 108
Query: 121 T-------IEPPQGIDWICVSPKAGCDLKI--------KGGQELKLVFPQVNVSPENYIG 165
+ + + P +G + ++ + LK V Y
Sbjct: 109 SVALAPFIRDKRPDFNMDYKLPDSGMESRMIIDNISLLQANDTLKFVCASHRDLLRAYEV 168
Query: 166 FD----FERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ P+ G + + + + + RL +Q HKFI
Sbjct: 169 IQQTKPKCKVYFSPVFGKIEPADM---VEFIKEKGLGEVRLQLQLHKFI 214
>gi|15614805|ref|NP_243108.1| hypothetical protein BH2242 [Bacillus halodurans C-125]
gi|10174861|dbj|BAB05961.1| BH2242 [Bacillus halodurans C-125]
Length = 236
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 49/240 (20%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
MK + EIF T+QGEG G+ +F R GC+ C +CD+ F
Sbjct: 1 MKRIPVMEIFGPTVQGEGMVIGQKTMFVRTGGCD-----------YSCSWCDSAFTWDGS 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVET 118
K D++ +EE G + + ++GG P L L+ L+ +G +A+ET
Sbjct: 50 LKATLRTADEIIAKLEEI---GGERFSHVSISGGNPALHKGIGELVDKLHDKGIRVALET 106
Query: 119 NGTIEPPQGIDW--ICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VS 159
G++ + + +SPK +L + +++ +
Sbjct: 107 QGSLWQDWFLKIDDLTISPKPPSSQMKTDFTKLDQIIERLDTKQMSLKVVVFNDEDFRYA 166
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + F LQ + + + +L I +W ++ Q H
Sbjct: 167 EYVHERYPHVPFFLQVGNEDTVTGDNDLLIRTLLDRYEWLIAKATDSTIMNDAKILPQLH 226
>gi|304408385|ref|ZP_07390032.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
gi|304342674|gb|EFM08521.1| Radical SAM domain protein [Paenibacillus curdlanolyticus YK9]
Length = 240
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 46/234 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T++GEG AG VF R GCNL +C +CDT +
Sbjct: 18 SKLPMVEIFETVEGEGTRAGFPTVFVRLFGCNL-----------RCVWCDTTYSYPPAKS 66
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF----EIAVE 117
++ ++ + ++ R+ TGGEPLL D + ++ VE
Sbjct: 67 EYSLSIREIVEKVK------SYRSRHICFTGGEPLLYGDRSAMLLKALAEIDGIVDVHVE 120
Query: 118 TNGTIEPPQGIDWICVS------------------PKAGCDLKIKGGQELKLVFP---QV 156
TNG I ++ + + + ++ E+K V
Sbjct: 121 TNGAIGLAPFLESVPLPNVRYVMDYKLPDSGENDKMEMANFELLRPQDEIKFVIASDQDF 180
Query: 157 NVSPENYIGFDFERF-SLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFI 208
+ + E + + P+ L +L++Q HK I
Sbjct: 181 DAAVETLRRYPTQALPMFSPVWESMPPA--KLVDRMLEAGLSGVKLNMQLHKII 232
>gi|16082343|ref|NP_394815.1| ATP binding cassette transporter, ExsD protein related
[Thermoplasma acidophilum DSM 1728]
gi|10640702|emb|CAC12480.1| ATP binding cassette transporter, ExsD protein related
[Thermoplasma acidophilum]
Length = 209
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 43/223 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF ++QGEG +AG +F R + CN +C +CDT + G
Sbjct: 3 ITEIFHSIQGEGPYAGLPMLFVRTNVCN-----------IRCEWCDTKYSFY---GGKEI 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGT--- 121
+ +L +++E + TGGEPL + + ++++ G + +ETNGT
Sbjct: 49 PLSELLGIVKEAKEG------WVCFTGGEPLVQRDALAFVKSVVDMGKNVLIETNGTISI 102
Query: 122 -IEPPQGIDWICVSPKAGCDLKIKG--GQELKLVFPQ--VNVSPENYIGFDFER------ 170
+I + K KG L+ + Q + + ++ DF
Sbjct: 103 RNFVFSDRIFIDMDVKPPSAKVTKGFLMDNLRYLRKQDYLKIVIKDDTDLDFAIDFVDRY 162
Query: 171 -----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
F QP G + + + R+ Q HK I
Sbjct: 163 GEGLSFVFQPAWGSDIRRIADRIVGT---GYNVRVLPQIHKII 202
>gi|149916377|ref|ZP_01904897.1| radical activating protein [Roseobacter sp. AzwK-3b]
gi|149809831|gb|EDM69683.1| radical activating protein [Roseobacter sp. AzwK-3b]
Length = 242
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 50/238 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 8 RVSEIFGPTIQGEGALIGVPTVFVRTGGCD-----------YRCSWCDSLHA-VDSAFRE 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ E L+GG P +Q +I+ + RG+ A+ET G+
Sbjct: 56 TWAPMTPDAIMAEIEKLSGGRPLLVSLSGGNPAIQPLGEVIRLGHTRGYGFALETQGSVA 115
Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPE----NYIGFDFER---- 170
+ +D + +SPK +G ++ ++ + + +D+ R
Sbjct: 116 KDWFSELDMLVLSPKPPSSGMEVDWAAFDACIAAGQGADMVMKIVIFDETDYDWARKVAG 175
Query: 171 ------FSLQP--------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205
LQP +D L+ + + Q+ W R+ Q H
Sbjct: 176 RYPQLPLFLQPGNHTPPPPGDDAARVDQDGLDARMRWLVDHVTQD-GWFEARVLPQLH 232
>gi|313126238|ref|YP_004036508.1| organic radical activating enzyme [Halogeometricum borinquense DSM
11551]
gi|312292603|gb|ADQ67063.1| organic radical activating enzyme [Halogeometricum borinquense DSM
11551]
Length = 257
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 25/198 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F +LQGEG G + F R SGCNL +C FCD+ + T
Sbjct: 19 LPINELFASLQGEGKLVGVPSTFVRTSGCNL-----------RCWFCDSYHTSWEPT-HA 66
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
VD++ + + + VLTGGEPL+ + PL++ L + G+ + VETNGT+
Sbjct: 67 WMGVDEIVSAVTARDP------DHVVLTGGEPLIHDETAPLLERLAEHGYHVTVETNGTL 120
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQE------LKLVFPQVNVSPENYIGFDFERFSLQPM 176
P ID +SPK + + + + ER Q
Sbjct: 121 VPDAPIDLASISPKLSTSTPTPENAPDGVDVGEWEARHEESRINLDSLATLVERHEFQLK 180
Query: 177 DGPFLEENTNLAISYCFQ 194
E+ +
Sbjct: 181 FVVTGPEDMPEIENLVAD 198
>gi|110596862|ref|ZP_01385152.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
gi|110341549|gb|EAT60009.1| Radical SAM [Chlorobium ferrooxidans DSM 13031]
Length = 224
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 79/234 (33%), Gaps = 50/234 (21%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+I EIF ++QGE +AG F R +GC CR CDT + G
Sbjct: 5 TLNISEIFHSIQGESSYAGWPCTFIRLAGC-----------GHGCRHCDTAYAEH---PG 50
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
N++++ + + E +TGGEPLLQ +V + + N+ + +ET G
Sbjct: 51 REMNIEEIIERVVEL------GAPLVEITGGEPLLQEEVYPLMEKLCNRWKERVLLETGG 104
Query: 121 TIEPPQGIDWI-----------CVSPKAGCDLK---------IKGGQELKLVFPQVNVSP 160
+ + + VS K + ELK+V
Sbjct: 105 FLSVAKADPRVHKIIDLKPPSTGVSDKNNPENIALALKQKDHANRLIELKIVVADREDYL 164
Query: 161 ENYIGF------DFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
D + G NLA R+ +Q HK+I
Sbjct: 165 WARELLTRTGLPDACTVMMGVAFGMLEP--VNLANWILEDRLNVRMQLQLHKYI 216
>gi|288556797|ref|YP_003428732.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4]
gi|288547957|gb|ADC51840.1| hypothetical protein BpOF4_19005 [Bacillus pseudofirmus OF4]
Length = 236
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 51/241 (21%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
MK + EIF T+QGEG G+ +F R GC+ +C +CD+ F
Sbjct: 1 MKKIPVMEIFGPTIQGEGMVIGQKTMFVRTGGCD-----------YRCSWCDSAFTWDGT 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVET 118
K +++ I++ G + ++GG P + L+ L G + AVET
Sbjct: 50 GKSNLMTAEEI---IKQLKEIGGDRFSHVTISGGNPAIHQGIGKLVSFLKSLGIKTAVET 106
Query: 119 NGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV------------SPENYI 164
G+ E + + +SPK +L ++ Y
Sbjct: 107 QGSLWQEWMMEVSDVTISPKPPSSKMETDFDKLDYYIDRLKDQHVSLKVVVFTEEDLEYA 166
Query: 165 GFDFERF-----SLQP-MDGPFLEENTNLAISYCFQNPKW--------------RLSVQT 204
ER+ LQ D EN +L IS+ +W ++ Q
Sbjct: 167 KHIHERYPEIPMYLQVGNDEVESVENDSL-ISHLLDRYEWLIDQAVASETLNDVKVLPQL 225
Query: 205 H 205
H
Sbjct: 226 H 226
>gi|213615976|ref|ZP_03371802.1| hypothetical protein SentesTyp_16494 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 178
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 21/167 (12%)
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
+ K G + + L +I Q R+ V+TGGEP + +PL L K GF +E
Sbjct: 18 ESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 73
Query: 118 TNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV------FPQVNVSPENY 163
T+GT E W+ VSPK ++ E+K ++
Sbjct: 74 TSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATL 133
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 134 SDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 177
>gi|162450849|ref|YP_001613216.1| radical activating enzyme [Sorangium cellulosum 'So ce 56']
gi|161161431|emb|CAN92736.1| radical activating enzyme [Sorangium cellulosum 'So ce 56']
Length = 217
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 47/232 (20%)
Query: 1 MK--LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
MK + EI+ ++QGE AG F R +GCNL +C +CDT
Sbjct: 1 MKEDTLVVHEIYASVQGESTFAGLPCTFVRLTGCNL-----------RCAWCDTSQAFYG 49
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVE 117
G + R +++E G LTGGEPLLQ PL+ L G + VE
Sbjct: 50 GKRIRR------GEVLERALALG---TPLVELTGGEPLLQPGSFPLLAELCDAGRTVLVE 100
Query: 118 TNGTIEPPQGIDWI-----CVSPKAGCDLKIKG--------GQELKLVFPQ-------VN 157
T+G + + + +P +G + + E+K V +
Sbjct: 101 TSGEADVSRVDPRVHKIMDLKAPGSGESHRNRWSNLDHLTPRDEIKFVLADRADYAWMRD 160
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
E + + G + + + + + R+ VQ HK I
Sbjct: 161 TIRERRLDARGVTLLASCVWGKLSPK---ELVQWVLDDGLRVRVQVQLHKVI 209
>gi|319891709|ref|YP_004148584.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus
pseudintermedius HKU10-03]
gi|317161405|gb|ADV04948.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus
pseudintermedius HKU10-03]
Length = 237
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 34/207 (16%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDF-----------RCSWCDSKFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + + +++ + G + ++GG P L++ + A+ET
Sbjct: 49 SMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDIRTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-------------- 162
G + I+ + +SPK + L V Q+++S N
Sbjct: 109 QGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRINLKVVVFDDVDYDFA 168
Query: 163 ---YIGFDFERFSLQPMDGPFLEENTN 186
+ + F LQ + P+LEE+
Sbjct: 169 KMIHQRYPDIPFYLQ-VGNPYLEEHVE 194
>gi|83951567|ref|ZP_00960299.1| radical SAM domain protein [Roseovarius nubinhibens ISM]
gi|83836573|gb|EAP75870.1| radical SAM domain protein [Roseovarius nubinhibens ISM]
Length = 236
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 84/242 (34%), Gaps = 47/242 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I EIF T+QGEG G VF R GC+ +C +CDT +
Sbjct: 1 MSSLRISEIFGPTIQGEGILIGEPTVFVRAGGCD-----------YRCSWCDTPHA-VDS 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ D+ +E + + L+GG P +Q PLI +G+ A ET
Sbjct: 49 EHRSSWTPMTTFDIWDEIQRLSDGQPLTVSLSGGNPAIQDFGPLIALGRAQGYRFACETQ 108
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELK-----------LVFPQVNVSPENYIGF 166
G+I +D + +SPK + + + V E+Y
Sbjct: 109 GSIARGWFNVLDTLVLSPKPPSSGERPDWEAFDACLRAGANAGRTILKIVIFDDEDYNWA 168
Query: 167 DFER-------FSL----------QPMDGPFLEENTNLAISYCFQNPKW---RLSVQTHK 206
+ L QP+D P + + L ++ W R+ Q H
Sbjct: 169 KTVQARFPGLPLFLQPGNPEIDPAQPVDLPAMADRLRLLTERAMRD-GWFSVRILPQLHV 227
Query: 207 FI 208
FI
Sbjct: 228 FI 229
>gi|297621468|ref|YP_003709605.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044]
gi|297376769|gb|ADI38599.1| Radical activating enzyme [Waddlia chondrophila WSU 86-1044]
Length = 228
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 43/227 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + EIFL++QGE G F R + CNL +C +CDT + +G
Sbjct: 15 QTLRLIEIFLSIQGETSLTGLPTTFIRLASCNL-----------RCTWCDTPYSFGKGES 63
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
++ + + + + +TGGEPLLQ L++ L + +++ET G
Sbjct: 64 S---SLQSIIETV------RSNGASHVCITGGEPLLQSQVYLLMETLCNLDYIVSLETGG 114
Query: 121 TI-------EPPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFD 167
++ +D C + E+K V +
Sbjct: 115 SLSTEKVDPRVITILDIKCPGSGMSQKNTWENLERLREQDEVKFVIMNREDYEWSVKICK 174
Query: 168 FERFS-------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKF 207
P+ + L R+++Q HK+
Sbjct: 175 NRDLFSRSKPPLFSPVHNVLNPQ--ELIQWTLQDTLPVRINLQVHKW 219
>gi|307943818|ref|ZP_07659162.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Roseibium sp. TrichSKD4]
gi|307773448|gb|EFO32665.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Roseibium sp. TrichSKD4]
Length = 247
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 79/244 (32%), Gaps = 49/244 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
K I EIF T+QGEG G+ VF R GC+ +C +CDT +
Sbjct: 9 KSIRISEIFGPTIQGEGALVGKPTVFVRTGGCD-----------YRCSWCDTLHA-VDAE 56
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ A++ + L+GG P +Q LI +G+ A+ET G
Sbjct: 57 YRHDWTPMSAAEIFTKVEELSGGIPLTVSLSGGNPAIQPLASLITLGKAKGYAFALETQG 116
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162
+ + +D + +SPK L V + + +
Sbjct: 117 SVVKDWFAELDVLTLSPKPPSSGMKTDLAALDACVSAGGVATQIALKFAVMDEADYAFAR 176
Query: 163 YIGFDFERF--SLQPMDGPFLEENTNLA-ISY--CFQNPKW---R----------LSVQT 204
I LQP++ +T A I +W R L Q
Sbjct: 177 QISTRHPALPVYLQPVNHTPPPPDTEDADIDMSGIMDRMRWLVERTMSDRWYSATLLPQL 236
Query: 205 HKFI 208
H I
Sbjct: 237 HVLI 240
>gi|209551071|ref|YP_002282988.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209536827|gb|ACI56762.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 242
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 83/243 (34%), Gaps = 49/243 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 5 TIRISEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDSAF 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ + + ++ L+GG P +Q PLI+ + +G+ A+ET G+
Sbjct: 53 RDQWLPMSVEAVWQQVTKLSGGRPLTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQGS 112
Query: 122 --IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVN--VSPE 161
+ + +D + +SPK + E+ VF + + E
Sbjct: 113 VARDWFRDLDMLVLSPKPPSSGMLTDWDEVDNCLRLAAGGPDIVLKIVVFDDADYAFARE 172
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQTH 205
+ LQP + + + A I W R+ Q H
Sbjct: 173 AGERYPAIPLFLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADRWYAPRVLPQLH 232
Query: 206 KFI 208
+
Sbjct: 233 VLL 235
>gi|171185411|ref|YP_001794330.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
V24Sta]
gi|170934623|gb|ACB39884.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
Length = 216
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 38/224 (16%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF +LQGEG + GR AVF R +GC +CR+CDT +
Sbjct: 1 MKLRVLEIFASLQGEGVNLGRPAVFIRLAGCP-----------IRCRYCDTKYSW-DPLG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G + +++ G + V+TGGEPL+ ++ + +R + VET+G
Sbjct: 49 GEELDAEEVVRRAAAHGPLG-----HVVITGGEPLIWRNLHELACPLRRLGTVEVETSGV 103
Query: 122 IEPPQ----GIDWICVSPKAGCDLKIKGGQE---------LKLVFPQVNVSPE-----NY 163
P +D+ VSPK K V V E
Sbjct: 104 YPPTPQLDACVDFYDVSPKLSNAGVEAPLHPHYPRSPKAWFKFVVGGVEDVEEAARYVER 163
Query: 164 IGFDFERFSLQP--MDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
G +R L P E ++ + R++ + H
Sbjct: 164 HGIPRDRVFLMPLAETPEQHAEVLRRIWDAAVEH-RLRVTPRLH 206
>gi|322805868|emb|CBZ03433.1| queuosine Biosynthesis QueE Radical SAM [Clostridium botulinum
H04402 065]
Length = 221
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 80/233 (34%), Gaps = 46/233 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E +++ GEG G++A+F RF+GCNL C +CDT + +
Sbjct: 1 MDFKVVERVVSINGEGRRCGQLAIFIRFAGCNLN-----------CSYCDTLWANEKDVP 49
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ + + I+ KE + LTGGEPLLQ L + + +ETN
Sbjct: 50 YEVLSSKDIYEYIK------SKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETN 103
Query: 120 G-----TIEPPQGIDWICVSPKAGCDLKIKGG-----------QELKLV---FPQVNVSP 160
G + + K +K V + +
Sbjct: 104 GSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAR 163
Query: 161 ENYIGF---DFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
E + D + P+ G N + + + N L +Q HK I
Sbjct: 164 EIINKYNLVDKTSVYISPVFGKI---NLDTIVEFMKNNRMNGVNLQLQLHKII 213
>gi|238754504|ref|ZP_04615859.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473]
gi|238707333|gb|EEP99695.1| hypothetical protein yruck0001_24400 [Yersinia ruckeri ATCC 29473]
Length = 170
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 21/167 (12%)
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
+ G + QL + +Q R+ V+TGGEP + PL L + GF +E
Sbjct: 10 ESDAWGNASEQQLLAIFRQQG----YTARHVVITGGEPCIYDLSPLTTLLEQEGFSCQIE 65
Query: 118 TNGTIE-PPQGIDWICVSPKAGC-------DLKIKGGQELKLV------FPQVNVSPENY 163
T+GT E W+ VSPK D + E+K +++ E
Sbjct: 66 TSGTHEVHCSATTWVTVSPKVNMRGGLTVLDQALIRADEIKHPVGRIRDIEALDILLERL 125
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ EE T L I C WRLS+QTHK++ I
Sbjct: 126 HDDKARIIALQPISQK--EEATRLCIETCIAR-NWRLSMQTHKYLNI 169
>gi|119871554|ref|YP_929561.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
4184]
gi|119672962|gb|ABL87218.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
Length = 216
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 38/198 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + EIF +LQGEG + G+ AVF R +GC +CR+CDT +
Sbjct: 1 MKFRVVEIFASLQGEGVNLGKPAVFIRLAGCP-----------IRCRYCDTKYSW-DPLG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G + +++ G + V+TGGEPL+ ++ + +R + VET+G
Sbjct: 49 GVEIDAEEVVQRAAAYGQLG-----HVVITGGEPLIWRNLHELACPLRRLGTVEVETSGV 103
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF- 180
P +D + +S + P
Sbjct: 104 YPPTPQLD-----------------ACVDFYDVSPKLSNARVDALLHPHYPRSPKAWFKF 146
Query: 181 ---LEENTNLAISYCFQN 195
EE+ A+ Y ++
Sbjct: 147 VVGGEEDVEEAVRYVEKH 164
>gi|323438941|gb|EGA96676.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O11]
gi|323441590|gb|EGA99239.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus O46]
Length = 237
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ G + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCAPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQL-VDLVMQSNDMNHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|145635038|ref|ZP_01790744.1| predicted organic radical activating enzyme [Haemophilus influenzae
PittAA]
gi|145267646|gb|EDK07644.1| predicted organic radical activating enzyme [Haemophilus influenzae
PittAA]
Length = 181
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 37/203 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+VF RF CNL C +CDT + R++V Q+ + +
Sbjct: 1 MPSVFVRFGKCNLD-----------CPWCDTPY-----NNFKRWSVSQILEKV------R 38
Query: 82 EKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
+ ++TGGEP + + + + G+ +A+ETNG P ID+I SPK+
Sbjct: 39 SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYA 98
Query: 141 LKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC- 192
K + E+++V + + + L P + + N I+
Sbjct: 99 HKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEI-DGKMNLLETITLLG 157
Query: 193 -----FQNPKWRLSVQTHKFIGI 210
PKW+LS+QTHK IGI
Sbjct: 158 QLNQRSNKPKWQLSLQTHKLIGI 180
>gi|283470004|emb|CAQ49215.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus ST398]
Length = 237
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ G + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQL-VDLVMQSNDINHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|49482966|ref|YP_040190.1| radical activating enzyme [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257424829|ref|ZP_05601256.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257427497|ref|ZP_05603896.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257430128|ref|ZP_05606512.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus 68-397]
gi|257432830|ref|ZP_05609190.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410]
gi|257435734|ref|ZP_05611782.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus M876]
gi|282903337|ref|ZP_06311228.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus C160]
gi|282905117|ref|ZP_06312975.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282908094|ref|ZP_06315925.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910354|ref|ZP_06318158.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282913547|ref|ZP_06321336.1| ExsD protein [Staphylococcus aureus subsp. aureus M899]
gi|282916048|ref|ZP_06323811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus D139]
gi|282918500|ref|ZP_06326237.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus C427]
gi|282923465|ref|ZP_06331145.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus C101]
gi|283769872|ref|ZP_06342764.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp.
aureus H19]
gi|283957539|ref|ZP_06374992.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus A017934/97]
gi|293500594|ref|ZP_06666445.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509540|ref|ZP_06668251.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus M809]
gi|293524126|ref|ZP_06670813.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015]
gi|295427286|ref|ZP_06819921.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|297590363|ref|ZP_06949002.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus MN8]
gi|49241095|emb|CAG39773.1| putative radical activating enzyme [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257272399|gb|EEV04522.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257275690|gb|EEV07163.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257279325|gb|EEV09926.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus 68-397]
gi|257282245|gb|EEV12380.1| coenzyme PQQ synthesis [Staphylococcus aureus subsp. aureus E1410]
gi|257284925|gb|EEV15044.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus M876]
gi|282314333|gb|EFB44723.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus C101]
gi|282317634|gb|EFB48006.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus C427]
gi|282319996|gb|EFB50343.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus D139]
gi|282322579|gb|EFB52901.1| ExsD protein [Staphylococcus aureus subsp. aureus M899]
gi|282325746|gb|EFB56054.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282327759|gb|EFB58041.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331942|gb|EFB61453.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282596292|gb|EFC01253.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus C160]
gi|283460019|gb|EFC07109.1| queuosine biosynthesis protein QueE [Staphylococcus aureus subsp.
aureus H19]
gi|283790990|gb|EFC29805.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus A017934/97]
gi|290921089|gb|EFD98150.1| ExsD protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095599|gb|EFE25860.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus 58-424]
gi|291467637|gb|EFF10152.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus M809]
gi|295128674|gb|EFG58305.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|297576662|gb|EFH95377.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus MN8]
gi|312438868|gb|ADQ77939.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus TCH60]
gi|315194326|gb|EFU24718.1| putative radical activating enzyme [Staphylococcus aureus subsp.
aureus CGS00]
Length = 237
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ G + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQL-VDLVMQSNDMNHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|317505338|ref|ZP_07963266.1| GntS protein [Prevotella salivae DSM 15606]
gi|315663552|gb|EFV03291.1| GntS protein [Prevotella salivae DSM 15606]
Length = 141
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 83/147 (56%), Gaps = 9/147 (6%)
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
+ D+I I+ K+ + VLTGGEP LQVD LI AL+ GF +A+E+NGT PPQ
Sbjct: 1 MTIDDIISA--ISKWKKAGFVVLTGGEPTLQVDDKLIDALHASGFYVAMESNGTRVPPQN 58
Query: 128 IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN--- 184
+DW+ VSPK + + ELK +F S + G + + LQP D +N
Sbjct: 59 LDWLTVSPKGS--VVVTKCNELKCIFDGE--SMVDDAGIQADYYYLQPCDVGDKAKNQVI 114
Query: 185 TNLAISYCFQNPKWRLSVQTHKFIGIR 211
ISY +PKWRLS+QTHK IGI+
Sbjct: 115 LQACISYILSHPKWRLSLQTHKMIGIQ 141
>gi|327398276|ref|YP_004339145.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
gi|327180905|gb|AEA33086.1| Radical SAM domain protein [Hippea maritima DSM 10411]
Length = 211
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 79/220 (35%), Gaps = 37/220 (16%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF ++QGEG G A+F R GCNL C FCDT + +
Sbjct: 5 VSEIFYSIQGEGSKIGYKAIFIRLCGCNLK-----------CPFCDTKYAL---SCKNPM 50
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
N ++ + I + + TGGEP L+ + + +ETNGT+ P
Sbjct: 51 NAHEIYEKISR------FPAKNIIFTGGEPTLKDNFMAYFMKKYNNYSYFLETNGTLFPK 104
Query: 126 QG---IDWICVSPKAGCD--------LKIKGGQELKLVFPQ-VNVSPENYIGFDFERFSL 173
+ I VSPK +K E K V + E + +
Sbjct: 105 KSINLFSHIVVSPKMFAINLDVLKSLIKYSISIEFKFVVDENFTKELELMEELGLKEATF 164
Query: 174 QPMDGPFLEEN----TNLAISYCFQNP-KWRLSVQTHKFI 208
QP+ E+ T I P R+ Q HK +
Sbjct: 165 QPVWLNDSMESYIKKTVRIIEKLKDIPYNIRIIPQIHKIL 204
>gi|104781624|ref|YP_608122.1| hypothetical protein PSEEN2518 [Pseudomonas entomophila L48]
gi|95110611|emb|CAK15322.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 229
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 83/231 (35%), Gaps = 43/231 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
++E+F TLQGEG ++G + F R SGCNL C +CDT F
Sbjct: 16 TLWVEEVFRTLQGEGPYSGVPSTFVRLSGCNLQ-----------CYWCDTQFEAF----- 59
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
R++ ++E VLTGGEP Q PLIQ GF++ +ETNGTI
Sbjct: 60 -RWS-MTPQAIVEMIRGLEAPVPELVVLTGGEPFRQSIAPLIQVFLDEGFKVQIETNGTI 117
Query: 123 EP---PQGIDWICVSPKAGCDL--KIKGGQELKLVFPQVNVSPEN--------------- 162
+ SPK I+ K V + +
Sbjct: 118 YQAIPTGQDVTVVCSPKTPVLDLRMIEIITHYKYVLAHGEIDEVDGLPGTSTQRAGKKAR 177
Query: 163 -YIGFDFERFSLQPMDGPFLEE---NTNLAISYCFQNPKWRLSVQTHKFIG 209
+ + + P D + N I + L++Q HK +
Sbjct: 178 LFRPPQGKPVYVMPRDDYDEQRNKDNLKACID-VATRQGYTLNMQLHKLLN 227
>gi|187735213|ref|YP_001877325.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425265|gb|ACD04544.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
Length = 227
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 82/224 (36%), Gaps = 44/224 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
EIF ++QGEG G VF R +GCNL C +CDT + G R
Sbjct: 12 EIFHSIQGEGVSQGTPCVFLRLAGCNL-----------ACSWCDTAYSWNGTVPGVRLAP 60
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
++ A+L+ R VLTGGEPL+Q + +ETNGTI P
Sbjct: 61 EKAAELVL------HYPCRRLVLTGGEPLIQQKALPALLRLLPDHAVEMETNGTIMPDTE 114
Query: 128 ----IDWICVSPKAGC----DLKIKGGQELKL------------VFPQVNVS----PENY 163
+ VSPK D+K L+ V + +V +
Sbjct: 115 LLKRVTQFNVSPKLPHSGNNDVKTWKPDILRCLAGTEKAWFKFVVACEDDVRAVLQRASE 174
Query: 164 IGFDFERFSLQPMDGPFLEEN--TNLAISYCFQNPKWRLSVQTH 205
ER + P+ E N A+ +C R S + H
Sbjct: 175 ADIPPERILIMPLASTRDELNAMRPQAVEWCL-RYGLRFSDRLH 217
>gi|149179805|ref|ZP_01858310.1| YkvL [Bacillus sp. SG-1]
gi|148851997|gb|EDL66142.1| YkvL [Bacillus sp. SG-1]
Length = 239
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MRKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + D+ EE G + ++GG P L+ L+ + G + A+ET
Sbjct: 49 SAKEDIRMLTALDIWEELREIGGNRFNHVTISGGNPALIAAIDDLLTVFKENGIKSALET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPEN--- 162
G+ ID + +SPK ++L + Q+ + E+
Sbjct: 109 QGSRWQDWFLDIDELTLSPKPPSSGMKTDFEKLDFILEQLKEHKSYSLKVVIFNDEDLEY 168
Query: 163 ----YIGFDFERFSLQPMDGPFLEEN-----TNLAISYCF--------QNP-KWRLSVQT 204
+ + F LQ + EN L Y + R+ Q
Sbjct: 169 ATDLHERYPEVPFFLQVGNTNLSSENEKGLLNQLITDYEKLIDTVTESERLNNVRVLPQL 228
Query: 205 HKF 207
H +
Sbjct: 229 HTY 231
>gi|118592129|ref|ZP_01549523.1| organic-radical-activating protein [Stappia aggregata IAM 12614]
gi|118435425|gb|EAV42072.1| organic-radical-activating protein [Stappia aggregata IAM 12614]
Length = 242
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 82/241 (34%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ VF R GC+ +C +CDT +
Sbjct: 7 RVSEIFGPTIQGEGALIGQPTVFVRTGGCD-----------YRCSWCDTLHA-VDSAHRD 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ + I L+GG P +Q LI K G+ A+ET G+
Sbjct: 55 EWCPMTPQAILMQVEILSGGNPLTVSLSGGNPAIQPLGGLITLGRKEGYRFALETQGSLA 114
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENYIG 165
+ +D + +SPK Q L VF + + + +
Sbjct: 115 KDWFADLDVLTLSPKPPSSGMTTDWQRLAECVEAAGPETQTVLKVVVFDEADYAFARDVS 174
Query: 166 FDFERF--SLQP-MDGPFLEENTNLAISY--CFQNPKW---RLS----------VQTHKF 207
+ LQP P +T+ I + +W R++ Q H
Sbjct: 175 DRYPHLSCFLQPGNHTPPAATDTDATIDMTGIMERMRWLVDRVTSDKWYAATVLPQLHTM 234
Query: 208 I 208
I
Sbjct: 235 I 235
>gi|23100258|ref|NP_693725.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831]
gi|22778490|dbj|BAC14759.1| coenzyme PQQ synthesis [Oceanobacillus iheyensis HTE831]
Length = 240
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 86/245 (35%), Gaps = 50/245 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ EIF T+QGEG GR +F R +GC+ C +CD+ F G+
Sbjct: 1 MKIPVLEIFGPTIQGEGMVIGRKTMFVRTAGCD-----------YSCSWCDSKFTW-DGS 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
+ + + ++ + G + ++GG P LL+ L+ L++ E+A+ET
Sbjct: 49 EKDSIQLLEPEEVFDSLKDIGGNTFGHVTISGGNPALLKQIDGLVDLLHQHQIEVALETQ 108
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------------------- 157
G+ +D + +SPK L + +++
Sbjct: 109 GSRWQDWFTKVDDLTLSPKPPSSGMKTNFTTLDNIIERLDKEQDGHFSLKVVIFDQEDLT 168
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENT-----------NLAISYCFQN---PKWRLSVQ 203
+ + ++ + F LQ + I +N R+ Q
Sbjct: 169 YAEQIHVRYPFVTLFLQVGNDNIEASEDDRLLSDLLDKYEKLIDLVMENKVLKDVRVLPQ 228
Query: 204 THKFI 208
H ++
Sbjct: 229 LHTYL 233
>gi|15923700|ref|NP_371234.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926387|ref|NP_373920.1| hypothetical protein SA0665 [Staphylococcus aureus subsp. aureus
N315]
gi|21282401|ref|NP_645489.1| hypothetical protein MW0672 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485582|ref|YP_042803.1| putative radical activating enzyme [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651549|ref|YP_185647.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus COL]
gi|87162096|ref|YP_493398.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194484|ref|YP_499278.1| hypothetical protein SAOUHSC_00719 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267170|ref|YP_001246113.1| radical SAM domain-containing protein [Staphylococcus aureus subsp.
aureus JH9]
gi|150393218|ref|YP_001315893.1| radical SAM domain-containing protein [Staphylococcus aureus subsp.
aureus JH1]
gi|151220891|ref|YP_001331713.1| hypothetical protein NWMN_0679 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979038|ref|YP_001441297.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
aureus Mu3]
gi|161508974|ref|YP_001574633.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140926|ref|ZP_03565419.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315349|ref|ZP_04838562.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253731333|ref|ZP_04865498.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253732846|ref|ZP_04867011.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus TCH130]
gi|255005502|ref|ZP_05144103.2| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257794969|ref|ZP_05643948.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A9781]
gi|258418286|ref|ZP_05682551.1| radical activating enzyme family protein [Staphylococcus aureus
A9763]
gi|258421583|ref|ZP_05684508.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus A9719]
gi|258430776|ref|ZP_05688488.1| radical activating enzyme family protein [Staphylococcus aureus
A9299]
gi|258441731|ref|ZP_05691003.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115]
gi|258445827|ref|ZP_05694004.1| radical activating enzyme family protein [Staphylococcus aureus
A6300]
gi|258449638|ref|ZP_05697740.1| radical activating enzyme family protein [Staphylococcus aureus
A6224]
gi|258452918|ref|ZP_05700912.1| radical activating enzyme family protein [Staphylococcus aureus
A5948]
gi|258454039|ref|ZP_05702011.1| radical activating enzyme family protein [Staphylococcus aureus
A5937]
gi|262048445|ref|ZP_06021330.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30]
gi|262052792|ref|ZP_06024980.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3]
gi|269202330|ref|YP_003281599.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus ED98]
gi|282894475|ref|ZP_06302704.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus A8117]
gi|282922002|ref|ZP_06329699.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
[Staphylococcus aureus A9765]
gi|282926573|ref|ZP_06334203.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
[Staphylococcus aureus A10102]
gi|294849379|ref|ZP_06790122.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A9754]
gi|295406428|ref|ZP_06816234.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A8819]
gi|296274774|ref|ZP_06857281.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus MR1]
gi|297208566|ref|ZP_06924995.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297245155|ref|ZP_06929029.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A8796]
gi|300912658|ref|ZP_07130101.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus TCH70]
gi|304381675|ref|ZP_07364324.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|13700601|dbj|BAB41898.1| SA0665 [Staphylococcus aureus subsp. aureus N315]
gi|14246479|dbj|BAB56872.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
aureus Mu50]
gi|21203838|dbj|BAB94537.1| MW0672 [Staphylococcus aureus subsp. aureus MW2]
gi|49244025|emb|CAG42451.1| putative radical activating enzyme [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285735|gb|AAW37829.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus COL]
gi|87128070|gb|ABD22584.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202042|gb|ABD29852.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740239|gb|ABQ48537.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
JH9]
gi|149945670|gb|ABR51606.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
JH1]
gi|150373691|dbj|BAF66951.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721173|dbj|BAF77590.1| coenzyme PQQ synthesis homologue [Staphylococcus aureus subsp.
aureus Mu3]
gi|160367783|gb|ABX28754.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253725074|gb|EES93803.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253729211|gb|EES97940.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus TCH130]
gi|257788941|gb|EEV27281.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A9781]
gi|257839079|gb|EEV63558.1| radical activating enzyme family protein [Staphylococcus aureus
A9763]
gi|257842509|gb|EEV66933.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus A9719]
gi|257849448|gb|EEV73418.1| radical activating enzyme family protein [Staphylococcus aureus
A9299]
gi|257852200|gb|EEV76127.1| coenzyme PQQ synthesis [Staphylococcus aureus A8115]
gi|257855403|gb|EEV78341.1| radical activating enzyme family protein [Staphylococcus aureus
A6300]
gi|257857146|gb|EEV80045.1| radical activating enzyme family protein [Staphylococcus aureus
A6224]
gi|257859429|gb|EEV82283.1| radical activating enzyme family protein [Staphylococcus aureus
A5948]
gi|257863904|gb|EEV86660.1| radical activating enzyme family protein [Staphylococcus aureus
A5937]
gi|259159333|gb|EEW44389.1| hypothetical protein SA930_0349 [Staphylococcus aureus 930918-3]
gi|259163533|gb|EEW48090.1| hypothetical protein SAD30_2172 [Staphylococcus aureus D30]
gi|262074620|gb|ACY10593.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus ED98]
gi|269940287|emb|CBI48664.1| putative radical activating enzyme [Staphylococcus aureus subsp.
aureus TW20]
gi|282591466|gb|EFB96538.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
[Staphylococcus aureus A10102]
gi|282593660|gb|EFB98652.1| 7-cyano-7-deazaguanosine (preQ) biosynthesis protein QueE
[Staphylococcus aureus A9765]
gi|282763188|gb|EFC03319.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus A8117]
gi|285816411|gb|ADC36898.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus aureus
04-02981]
gi|294823911|gb|EFG40337.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A9754]
gi|294968573|gb|EFG44596.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A8819]
gi|296886821|gb|EFH25725.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297177826|gb|EFH37075.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus A8796]
gi|300886904|gb|EFK82106.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus TCH70]
gi|302750608|gb|ADL64785.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304339778|gb|EFM05723.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312829203|emb|CBX34045.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129385|gb|EFT85378.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus CGS03]
gi|315197686|gb|EFU28021.1| organic radical-activating protein [Staphylococcus aureus subsp.
aureus CGS01]
gi|320139958|gb|EFW31819.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320141952|gb|EFW33780.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313432|gb|AEB87845.1| Radical SAM domain protein [Staphylococcus aureus subsp. aureus
T0131]
gi|329724494|gb|EGG61001.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus 21172]
gi|329728549|gb|EGG64982.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus 21189]
gi|329729722|gb|EGG66123.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus subsp. aureus 21193]
Length = 237
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ G + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQL-VDLVMQSNDMNHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|16264809|ref|NP_437601.1| hypothetical protein SM_b20938 [Sinorhizobium meliloti 1021]
gi|2808502|emb|CAA12532.1| ExsD protein [Sinorhizobium meliloti]
gi|15140947|emb|CAC49461.1| hypothetical conserved protein [Sinorhizobium meliloti 1021]
Length = 245
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 81/241 (33%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 10 RVSEIFGPTIQGEGVLIGLPTVFVRSGGCD-----------YRCSWCDSLHA-VDSNYRH 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ +E E L+GG P +Q LI ++ G+ A+ET G+
Sbjct: 58 EWQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHENGYRFALETQGSVA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENYIG 165
+ +D + +SPK + L VF + + +
Sbjct: 118 RDWFANLDVLVLSPKPPSSGMETDWEALDDCLRSAGNKPQTVLKFVVFDEADYAYAMTAA 177
Query: 166 FDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP + P E + + I + +W R+ Q H
Sbjct: 178 ARHPHLPVYLQPGNHTPPPAEEADAPIDIDGVMERMRWLVDRVVADRWFEARVLPQLHVL 237
Query: 208 I 208
I
Sbjct: 238 I 238
>gi|258423359|ref|ZP_05686250.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus A9635]
gi|257846420|gb|EEV70443.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus aureus A9635]
Length = 237
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVIAQCVPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQL-VDLVMQSNDMNHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|171912287|ref|ZP_02927757.1| Radical SAM domain protein [Verrucomicrobium spinosum DSM 4136]
Length = 231
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/239 (23%), Positives = 83/239 (34%), Gaps = 57/239 (23%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E F ++QGEG G +VF R SGCNL +CR+CDT + +G
Sbjct: 2 RISETFFSVQGEGKLTGVPSVFIRTSGCNL-----------RCRWCDTPYASWNP-EGDD 49
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT-I 122
+V+ + + RY V+TGGEP + L+Q L G I +ET GT +
Sbjct: 50 VSVEDILAEVNR------HPTRYVVVTGGEPTIAAGMRELLQGLRDAGKHITIETAGTVM 103
Query: 123 EPPQGIDWICVSPK---------------AGCDLKIKGGQELKLVFPQV----------- 156
D +SPK K + E+ + +
Sbjct: 104 PTDLACDLASLSPKLANSTPSVEEAGRGWHDRHEKTRWQPEVLRAWTEACEHQLKFVVSA 163
Query: 157 --------NVSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQTH 205
N+ E I E L P + L + +C WR + H
Sbjct: 164 EADLLEIENLLAEAKIQTAPENILLMPEGREQTRLHALAPQVVEWCKIR-GWRFCARLH 221
>gi|82750412|ref|YP_416153.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus RF122]
gi|82655943|emb|CAI80347.1| coenzyme PQQ synthesis homolog [Staphylococcus aureus RF122]
Length = 237
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ G + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQL-VDLVLQSNDMNHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|284023732|ref|ZP_06378130.1| radical activating enzyme family protein [Staphylococcus aureus
subsp. aureus 132]
Length = 237
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ G + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKGDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHIEKLLERYEQL-VDLVMQSNDMNHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|222149727|ref|YP_002550684.1| radical activating protein [Agrobacterium vitis S4]
gi|221736709|gb|ACM37672.1| radical activating protein [Agrobacterium vitis S4]
Length = 255
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/249 (19%), Positives = 80/249 (32%), Gaps = 54/249 (21%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + EIF T+QGEG G+ VF R GC+ +C +CD+ ++
Sbjct: 12 TVIRVSEIFGPTIQGEGVLIGQPTVFVRMGGCD-----------YRCSWCDSLHA-VESR 59
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + + E L+GG P +Q LI ++RG+ A+ET G
Sbjct: 60 FREEWLPMSVQAIWAEVESLSGGVPLMVSLSGGNPAIQPLGALIAHGHERGYRFALETQG 119
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQELK---------------------LVFPQVN 157
+ + +D + VSPK L +VF + +
Sbjct: 120 SIARDWFADLDVLVVSPKPPSSGMETDWDALSLCLEKAAARGEQQSPLTVLKFIVFDEAD 179
Query: 158 VSPENYIGFDFERF--SLQP-MDGPFLEENTNLAISY--CFQNPKW-------------R 199
+ LQP P E+ + I W R
Sbjct: 180 YAYARDASARHPHLPVYLQPGNHTPPPPEDDDAVIDMDGIMTRMHWLVDRVVEDRWFAAR 239
Query: 200 LSVQTHKFI 208
+ Q H +
Sbjct: 240 VLPQLHVLL 248
>gi|254464092|ref|ZP_05077503.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhodobacterales bacterium Y4I]
gi|206685000|gb|EDZ45482.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhodobacterales bacterium Y4I]
Length = 236
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 79/238 (33%), Gaps = 45/238 (18%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MTTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDSMHA-VDS 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ V D++ E + ++GG P +Q P+I + G+ A ET
Sbjct: 49 AYRHDWAVKTPEDVMAEVRRLSGGKPLTVSISGGNPAIQDFAPVIAIGKEEGYRFACETQ 108
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENYI 164
G + +D + +SPK + + Q + + +
Sbjct: 109 GSVSQPWFADLDTLVLSPKPPSSGEKTDWHKFTCCLHQAKGCGQAVMKIVVFDDTDYAWA 168
Query: 165 GFDFER-----FSLQPMDGPFLEE-------NTNLAISYCFQ--NPKW---RLSVQTH 205
ER LQP + E T+ + + W R+ Q H
Sbjct: 169 KAAAERHPELPLYLQPGNPEVDPEQPVDLNQATDRLLWLIEKVTGDGWFTPRVLPQLH 226
>gi|303247444|ref|ZP_07333716.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
gi|302491140|gb|EFL51032.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
Length = 210
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 40/224 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ + EIF ++QGE +AG F R SGCNL C +CDT +
Sbjct: 1 MLRVHEIFASIQGESSYAGYPCAFLRLSGCNLD-----------CSWCDTRYA---SASF 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
++D+ + + LTGGEPLL+ L +L G + VETNG+
Sbjct: 47 TAMSLDEARQKLLALGL------PLVELTGGEPLLEPLAPALAASLADAGATVLVETNGS 100
Query: 122 IEPPQGIDWI-----CVSPKAGCDLKI--------KGGQELKLVFPQVN----VSPENYI 164
++ + P +G + K + E+K V
Sbjct: 101 LDIGVLDPRVIAVMDVKCPGSGMEGKNDYANLDRLRPRDEVKFVLAGREDYLFARDVVRR 160
Query: 165 GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G LA + RL++Q HK+I
Sbjct: 161 VPAGNAVHFSPVAGRLDPA--ELAAWMVADASRARLALQLHKYI 202
>gi|145641210|ref|ZP_01796790.1| predicted methyltransferase [Haemophilus influenzae R3021]
gi|145274047|gb|EDK13913.1| predicted methyltransferase [Haemophilus influenzae 22.4-21]
Length = 181
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 37/203 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+VF RF CNL C +CDT + R++V Q+ + +
Sbjct: 1 MPSVFVRFGKCNLD-----------CPWCDTPY-----NNFKRWSVSQILEKV------W 38
Query: 82 EKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
+ ++TGGEP + + + + G+ +A+ETNG P ID+I SPK+
Sbjct: 39 SFSSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNGLKAIPAQIDYIATSPKSLYA 98
Query: 141 LKIKGG-----QELKLVFPQ--VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC- 192
K + E+++V + + + L P + + N I+
Sbjct: 99 HKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYLSPCEI-DGKMNLLETITLLG 157
Query: 193 -----FQNPKWRLSVQTHKFIGI 210
PKW+LS+QTHK IGI
Sbjct: 158 QLNQRSNKPKWQLSLQTHKLIGI 180
>gi|307594720|ref|YP_003901037.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
14429]
gi|307549921|gb|ADN49986.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
Length = 220
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK + EIF + QGEG +AGR AVF R + CNL +C +CDT + GT
Sbjct: 1 MKSVRVIEIFKSWQGEGPNAGREAVFLRLALCNL-----------RCSWCDTKYSWFGGT 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
+ ++V ++ R+ V+TGGEPLL + L++ + +GF + VET
Sbjct: 50 EMNVHDVYEVLMKTA-------GGVRHLVVTGGEPLLWSRELLQLLRFIRAQGFFVEVET 102
Query: 119 NGTIEPPQGIDWI---CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
NGT+ P + ++++ VSPK + +L +S + F ++
Sbjct: 103 NGTLRPGELVNYVDEFNVSPKLSNSGVSVRVRVNELAIRDFVMSGKAIFKFVVDK 157
>gi|319401217|gb|EFV89432.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
epidermidis FRI909]
Length = 237
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 34/216 (15%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ E G + ++GG P L++ L+ ++ A+ET
Sbjct: 49 SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEEKHIYTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK + L V Q + + ++
Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEVLDSVINQCTFHSLNLKVVIFDDADYDFA 168
Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQN 195
R F LQ + P+L++N + +
Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203
>gi|298694039|gb|ADI97261.1| coenzyme PQQ synthesis-like protein [Staphylococcus aureus subsp.
aureus ED133]
gi|302332420|gb|ADL22613.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 237
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ +E G + ++GG P L++ L+ +G A+ET
Sbjct: 49 SAKSDIKLMTAEEIYDELKRIGGDLFNHVTISGGNPALIKGIQELVDLFQDKGIFSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK ++L V Q + ++
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSTMTPDLKKLDEVITQCVPSSLNLKVVVFDDKDYDFA 168
Query: 165 GFDFER-----FSLQPMDG-----------PFLEENTNLAISYCFQN---PKWRLSVQTH 205
R F LQ + LE L + Q+ + Q H
Sbjct: 169 KMIHHRYPDIPFYLQVGNPYLSDSVDNHTEKLLERYEQL-VDLVMQSNDMNHVYVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|261405277|ref|YP_003241518.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. Y412MC10]
gi|261281740|gb|ACX63711.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. Y412MC10]
Length = 243
Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 88/240 (36%), Gaps = 51/240 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG GR +F R +GC+ +C +CD+ F G+
Sbjct: 6 PVMEIFGPTVQGEGMVVGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DGSAKD 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
++ ++ +E + G + + L+GG P LL L+ L++ G +AVET G+
Sbjct: 54 SISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRHGITVAVETQGSR 113
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE------------------- 161
ID + +SPK +L + +++ P
Sbjct: 114 WQDWLNHIDEVTISPKPPSSGMDTDWGKLDDIVSRLSARPPGRTFSLKVVVFDDKDLTYA 173
Query: 162 --NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK--------------WRLSVQTH 205
+ + F LQ + +T +S+ + R+ Q H
Sbjct: 174 ETVHERYPNVPFYLQTGNPDVGTGDTTSLVSHLLDRYESLVDAVMQSDRLNDVRVLPQLH 233
>gi|307308045|ref|ZP_07587763.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Sinorhizobium meliloti BL225C]
gi|307319886|ref|ZP_07599309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Sinorhizobium meliloti AK83]
gi|306894426|gb|EFN25189.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Sinorhizobium meliloti AK83]
gi|306901449|gb|EFN32053.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Sinorhizobium meliloti BL225C]
Length = 245
Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 82/241 (34%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 10 RVSEIFGPTIQGEGVLIGLPTVFVRSGGCD-----------YRCSWCDSLHA-VDSNYRH 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ +E E L+GG P +Q LI +++G+ A+ET G+
Sbjct: 58 EWQTMSTEEVWQEIVRLSGGEAVMVSLSGGNPAIQPLGDLIGRGHEKGYRFALETQGSVA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENYIG 165
+ +D + +SPK + L VF + + +
Sbjct: 118 RDWFAALDVLVLSPKPPSSGMETDWEALDDCLRSAGNKPQTVLKFVVFDEADYAYAMTAA 177
Query: 166 FDFERF--SLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP + P E + + I + +W R+ Q H
Sbjct: 178 ARHPHLPVYLQPGNHTPPPAEEADAPIDIDGVMERMRWLVDRVVADRWFEARVLPQLHVL 237
Query: 208 I 208
I
Sbjct: 238 I 238
>gi|292655864|ref|YP_003535761.1| radical SAM protein [Haloferax volcanii DS2]
gi|291371719|gb|ADE03946.1| radical SAM protein, putative (TBD) [Haloferax volcanii DS2]
Length = 257
Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I E+F +LQGEG AG + F R SGCNL +C FCD+ + T
Sbjct: 18 RLPINELFASLQGEGKLAGVPSTFVRTSGCNL-----------RCWFCDSFHTSWEPT-H 65
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
++D++ +E + V+TGGEPL+ + + + + + VETNGT+
Sbjct: 66 AWLSLDEIVAEVESLSPE------HVVVTGGEPLVHDETDALLSALDDDYHLTVETNGTL 119
Query: 123 EPPQGIDWICVSPK 136
E +D +SPK
Sbjct: 120 ETDAPVDLASISPK 133
>gi|226314170|ref|YP_002774066.1| queuosine biosynthesis protein [Brevibacillus brevis NBRC 100599]
gi|226097120|dbj|BAH45562.1| putative queuosine biosynthesis protein [Brevibacillus brevis NBRC
100599]
Length = 239
Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/241 (22%), Positives = 83/241 (34%), Gaps = 50/241 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+
Sbjct: 1 MIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCNWCDSAFTW-DGSA 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120
+ EE G + ++GG P LL LI L + G AVET G
Sbjct: 49 RDEIRQMSPEAVWEELTRLGGDRFSHVTISGGNPALLAGIGDLISLLKEHGIRTAVETQG 108
Query: 121 TIE--PPQGIDWICVSPKAGCDLKIKGGQELKL------------------VFPQVNVSP 160
+ ID I +SPK Q L VF + +
Sbjct: 109 SKWQAWLPLIDDITLSPKPPSSGMQTDFQALDRIVHELLDQKHPGLSLKVVVFDDADFAY 168
Query: 161 ENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQT 204
I F F LQP + + +T ++ +W ++ Q
Sbjct: 169 ARTIHQRFPGVPFYLQPGNSDLTDADTPSLRDKLLESFEWLIDQAMETADMNDAKVLPQL 228
Query: 205 H 205
H
Sbjct: 229 H 229
>gi|190893559|ref|YP_001980101.1| organic-radical-activating protein [Rhizobium etli CIAT 652]
gi|190698838|gb|ACE92923.1| organic-radical-activating protein [Rhizobium etli CIAT 652]
Length = 242
Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 81/243 (33%), Gaps = 49/243 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 5 TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDSAF 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ + +E L+GG P +Q PLI+ + +G+ A+ET G+
Sbjct: 53 RDQWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQGS 112
Query: 122 --IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENY 163
+ +D + +SPK + ++ VF + +
Sbjct: 113 VARNWFRDLDVLVLSPKPPSSGMLTDWDQVDNCLRLAAGGPEIALKIVVFDDDDYAFAQE 172
Query: 164 IGFDFERF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQTH 205
G + LQP + + + A I W R+ Q H
Sbjct: 173 AGQRYPYIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADGWFAPRVLPQLH 232
Query: 206 KFI 208
+
Sbjct: 233 VLL 235
>gi|226945710|ref|YP_002800783.1| Radical SAM protein [Azotobacter vinelandii DJ]
gi|226720637|gb|ACO79808.1| Radical SAM protein [Azotobacter vinelandii DJ]
Length = 193
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 43/208 (20%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF R +GC L +C +CDT + + G + + + +
Sbjct: 1 MPTVFVRLTGCPL-----------RCGYCDTAYAF---SGGAVLPLSVILERV------A 40
Query: 82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC-----VSP 135
RY +TGGEPL Q + + L++ L G+E+++ET+G + + +P
Sbjct: 41 SYGPRYVCVTGGEPLAQPNSIELLRLLCDAGYEVSLETSGAFDISAVDCRVSRVLDLKTP 100
Query: 136 KAGCDLKIK--------GGQELKLVFPQVNVSPENYIGFDFERF-------SLQPMDGPF 180
+G + + ++K V R P G
Sbjct: 101 DSGEVARNRYANMTLLTRNDQMKFVLCSRQDYEWAVSKLIEYRLDERVGEVLFSPSHGQL 160
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFI 208
E LA N RL +Q HK +
Sbjct: 161 --EGRELADWIVADNLPVRLQLQLHKIL 186
>gi|183222780|ref|YP_001840776.1| putative organic radical activating protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189912811|ref|YP_001964366.1| organic radical activating enzyme [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167777487|gb|ABZ95788.1| Organic radical activating enzyme [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167781202|gb|ABZ99500.1| Putative organic radical activating enzyme [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 236
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 43/239 (17%)
Query: 3 LY-SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+Y I EI+ ++ GEG G VF RF+GC+L G+ R +CDT + + +
Sbjct: 1 MYGKIHEIYSSISGEGISQGIPTVFVRFAGCSLRCGKTDTRSL----WCDTPYA-LGPNQ 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--RGFEIA---- 115
G + + D I T + +LTGGEPL + L ++ + F
Sbjct: 56 GETKPLSTIMDEIVALDPTHGYQ---ILLTGGEPLEGKNRDLSISIAESIHSFRTHNDKP 112
Query: 116 -----VETNGTIEPPQGIDWI-CVSPKAGC---------------DLKIKGGQELKLVFP 154
VETNG+ + +I + K + + E+K V
Sbjct: 113 YPSSRVETNGSEKITLDPFFIFTMDYKLPGSGMEGRMDLENFQILEKRHNSLDEIKFVVR 172
Query: 155 QVNVSPENYIGFDFERF---SL-QPMDGPFLEENTNLAISYCFQN-PKWRLSVQTHKFI 208
+ ++ L P+ G + L N PK RLS+Q HK +
Sbjct: 173 DRIDFERSIEVIREQKIQTNILYSPVHGEVDAK--ELVEWIKIDNPPKGRLSLQIHKVL 229
>gi|241206476|ref|YP_002977572.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240860366|gb|ACS58033.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 242
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 81/243 (33%), Gaps = 49/243 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 5 TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDSAF 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ + + + L+GG P +Q PLI+ + RG+ A+ET G+
Sbjct: 53 RNQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSRGYRFALETQGS 112
Query: 122 --IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENY 163
+ +D + VSPK + ++ VF +
Sbjct: 113 IAQSWFRDLDVLVVSPKPPSSGMLTDWDQVDNCLQLAAGGPEVALKIVVFDDADYEFAQQ 172
Query: 164 IGFDFERF--SLQP-MDGPFLEENTNLAISY--CFQNPKW-------------RLSVQTH 205
G + + LQP P +N + I W R+ Q H
Sbjct: 173 AGQRYPQIPLFLQPGNHTPPPPDNDDARIDIDGVMDRMHWLVERVTADQWFEVRVLPQLH 232
Query: 206 KFI 208
+
Sbjct: 233 VLL 235
>gi|27467403|ref|NP_764040.1| coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis
ATCC 12228]
gi|251810140|ref|ZP_04824613.1| queuosine biosynthesis protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|282875714|ref|ZP_06284585.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus epidermidis SK135]
gi|293368166|ref|ZP_06614796.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)]
gi|27314946|gb|AAO04082.1|AE016745_181 coenzyme PQQ synthesis-like protein [Staphylococcus epidermidis
ATCC 12228]
gi|251806332|gb|EES58989.1| queuosine biosynthesis protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295741|gb|EFA88264.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus epidermidis SK135]
gi|291317700|gb|EFE58116.1| ExsD protein [Staphylococcus epidermidis M23864:W2(grey)]
gi|329723242|gb|EGG59772.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus epidermidis VCU144]
gi|329735618|gb|EGG71902.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus epidermidis VCU045]
gi|329736802|gb|EGG73067.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus epidermidis VCU028]
Length = 237
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 34/216 (15%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ + G + ++GG P L++ L+ + A+ET
Sbjct: 49 SAKEDIKLMTAEEIYDALLEIGGHRFNHVTISGGNPALIKGIQELVDLFEDKHIYTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK + L V Q + + ++
Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEILDSVINQCTFHSLNLKVVIFDDADYDFA 168
Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQN 195
R F LQ + P+L++N + +
Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203
>gi|242242077|ref|ZP_04796522.1| organic radical-activating protein [Staphylococcus epidermidis
W23144]
gi|242234462|gb|EES36774.1| organic radical-activating protein [Staphylococcus epidermidis
W23144]
Length = 237
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 34/216 (15%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ E G + ++GG P L++ L+ ++ A+ET
Sbjct: 49 SAKEDIKLMTAEEIYEALLEIGGHRFNHVTISGGNPALIKGIQELVNLFEEKHIYTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYI 164
G ID + +SPK + L V Q + + ++
Sbjct: 109 QGSRFQSWMTQIDDLTISPKPPSSGMKTNLEVLDSVINQCTFHSLNLKVVIFDDADYDFA 168
Query: 165 GFDFER-----FSLQPMDGPFLEENTNLAISYCFQN 195
R F LQ + P+L++N + +
Sbjct: 169 KLIHHRYPNIPFYLQ-VGNPYLDDNVDQHTDKLLER 203
>gi|327189839|gb|EGE56977.1| organic-radical-activating protein [Rhizobium etli CNPAF512]
Length = 242
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 7 RVSEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDSAFRE 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
++ + +E L+GG P +Q PLI+ + +G+ A+ET G+
Sbjct: 55 QWIPMSTEAIWQEVTKLSAGRPMTVSLSGGNPAIQPLGPLIEFGHSQGYRFALETQGSIA 114
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQE---------------LKLVFPQVN---VSPENY 163
+ +D + +SPK + + LK+V + + E
Sbjct: 115 RNWFRDLDVLVLSPKPPSSGMLTDWDQVDNCLRLAAGGPEIALKIVVFDDDDYAFAREAG 174
Query: 164 IGFDFERFSLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQTHKF 207
+ + LQP + + + A I W R+ Q H
Sbjct: 175 RRYPYIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTADGWFAPRVLPQLHVL 234
Query: 208 I 208
+
Sbjct: 235 L 235
>gi|224475851|ref|YP_002633457.1| putative organic radical activating enzyme [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420458|emb|CAL27272.1| putative organic radical activating enzyme [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 237
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 81/242 (33%), Gaps = 46/242 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ C +CD+ F G
Sbjct: 1 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YHCSWCDSKFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + + ++ + G + ++GG P L++ L+ + E A+ET
Sbjct: 49 SAKDQIEMMTAEEIYHQLKEVGGDYFNHVTISGGNPALIKGIQELVDLFEDKNIETALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----------------VNVS 159
G + I+ + +SPK + L V Q +
Sbjct: 109 QGSRYQPWMRQINDLTISPKPPSSGMKPNLEILDDVIAQCVLESLNLKVVIFEDKDFEFA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK----WRLS---------VQTHK 206
E + + F LQ + +E N + +S Q H
Sbjct: 169 KEIHHRYPSIPFYLQVGNPYLEDEVENHTERLLKRYENLVETVMVSSEMNDVYVLPQLHT 228
Query: 207 FI 208
+
Sbjct: 229 LL 230
>gi|260430571|ref|ZP_05784544.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Citreicella sp. SE45]
gi|260418600|gb|EEX11857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Citreicella sp. SE45]
Length = 235
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 75/245 (30%), Gaps = 55/245 (22%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 1 MSLRIAEIFGPTIQGEGALIGEPTVFVRTGGCD-----------YRCSWCDSLHA-VESR 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + + +E + L+GG P +Q P+I G+ A ET G
Sbjct: 49 YRDTWAAMSDSAVWDEVLRLSGGQPLTVSLSGGNPAIQDFAPVIARGRAAGYRFACETQG 108
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQEL-----------KLVFPQVNVSPENYIGFD 167
+ +D + +SPK + ++V V +Y
Sbjct: 109 SVARPWFAELDTLVLSPKPPSSGETVDWDAFAACVRAGSAARQMVMKIVIFDDTDYAWAR 168
Query: 168 FER-------FSLQPMDGPFLEE----NTNLAISYCFQNPKW-------------RLSVQ 203
LQP + E LA W R+ Q
Sbjct: 169 DAHARHPELPLYLQPGNPEVDPETPVDPQALA-----DRLGWLVERTMADAWFTPRILPQ 223
Query: 204 THKFI 208
H I
Sbjct: 224 LHVLI 228
>gi|116329391|ref|YP_799111.1| organic radical activating protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330008|ref|YP_799726.1| organic radical activating protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116122135|gb|ABJ80178.1| Organic radical activating enzyme [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116123697|gb|ABJ74968.1| Organic radical activating enzyme [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 243
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 82/236 (34%), Gaps = 44/236 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
S+ EI+L+L GEG G VF R +GC+L G + +CDT + G
Sbjct: 13 SVHEIYLSLSGEGISTGIPTVFVRMAGCSLRCGMAIGKKL----WCDTPYALSPS-AGEE 67
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEI---------- 114
++ ++ + I+E +LTGGEPL + AL F
Sbjct: 68 MDLKRVLNRIQELSPVY----TQVLLTGGEPLEGGNRDFSLALGNEIFRTRKFSNSYPRA 123
Query: 115 AVETNGTIEPPQ-GIDWICVSPKAGCD--------LKIKGGQELKLVFPQVNVSPENYIG 165
VETNG + K ++ + K ++ +
Sbjct: 124 RVETNGAESIEGLDQFVFTLDYKLPGSGMENRMNLENLEIYNKRKNELDEIKFVIRDRND 183
Query: 166 FDFE-----------RFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
F+ P+ G E + + + + RLS+QTHK+I
Sbjct: 184 FERCLEVIKVHELSGNLLASPVQGELSPEILS---EWLKSSLGSRLRLSLQTHKYI 236
>gi|256810231|ref|YP_003127600.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
gi|256793431|gb|ACV24100.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
Length = 243
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/253 (18%), Positives = 78/253 (30%), Gaps = 62/253 (24%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-------- 57
IKEIF ++ GEG + GR +F RF+GC L C +CD +
Sbjct: 2 IKEIFSSIMGEGKYIGRRFIFVRFAGCPLK-----------CIYCDEESKSYLNRVEKIP 50
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
+ + D++ + TGGEPLL + + L +G+
Sbjct: 51 GSGEFETLKNMDVEDVVNAVDKLRTPDLFAVSFTGGEPLLYSKKIKEIAEILKDKGYRTF 110
Query: 116 VETNGTIEPPQGIDWI-CVSPKAGCDLKIKGGQELKLVF--------------------- 153
+E+NG I + K + E K ++
Sbjct: 111 LESNGLFPEKVFYFDIASIDIKLKEHFEFIKDNEYKKLYKKELETIKKLYNLNSDVYAKV 170
Query: 154 --------PQVNVSPENYIGFDFERFSLQPM---------DGPFLEENTNLAISYCFQNP 196
V ++ +QP+ L E Y N
Sbjct: 171 VIMENTDIEDVKRIAKDLSDIGDITLCIQPVTPNGDIKSPSQRKLFEIMEACGEYLKDN- 229
Query: 197 KWRLSVQTHKFIG 209
L++Q HK++G
Sbjct: 230 -VMLTIQMHKYLG 241
>gi|289192393|ref|YP_003458334.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
gi|288938843|gb|ADC69598.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
Length = 243
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 84/253 (33%), Gaps = 62/253 (24%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-----QGT 60
I+EIF ++ GEG + GR +F RF+GC L C +CD + G +
Sbjct: 2 IREIFSSIMGEGKYIGRRFIFVRFAGCPLN-----------CVYCDEESKGYFNRVEKTP 50
Query: 61 KGGRYNVDQ---LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
G + Q + D+I + TGGEPLL + L +G+
Sbjct: 51 GSGEFETLQKIDIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEISDILKDKGYRTF 110
Query: 116 VETNGTIE---PPQGIDWICVSPKAGC------DLKIKGGQELKLV-------------- 152
+E+NG I I + K D K ELK +
Sbjct: 111 LESNGMFPEKVFYFDIASIDIKLKEHFEYIKDDDYKKLYKNELKTIKKLYNLNSDVYAKV 170
Query: 153 -------FPQVNVSPENYIGFDFERFSLQPM---------DGPFLEENTNLAISYCFQNP 196
V + ++ +QP+ L E Y N
Sbjct: 171 VIMEETKVDDVKIIAKDLSEIGNITLCIQPVTPHGNIKSPSQKKLFEIMEACGEYLKDN- 229
Query: 197 KWRLSVQTHKFIG 209
L++Q HK++G
Sbjct: 230 -VMLTIQMHKYLG 241
>gi|126737387|ref|ZP_01753122.1| radical activating protein [Roseobacter sp. SK209-2-6]
gi|126721972|gb|EBA18675.1| radical activating protein [Roseobacter sp. SK209-2-6]
Length = 235
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 77/237 (32%), Gaps = 45/237 (18%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDSLHA-VDSE 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ ++ +E + ++GG P +Q PLI+ + G+ A ET G
Sbjct: 49 NRHDWAKMSADEVFDEVCRLSGGKPLTVSISGGNPAIQDFAPLIRLGHAAGYGFACETQG 108
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQELK-----------LVFPQVNVSPENYIGFD 167
+ +D + +SPK + +V V +Y
Sbjct: 109 SIAKPWFGDLDTLVLSPKPPSSGEDTDWSSFDACLKAAEACEQVVMKIVIFDDADYAWAK 168
Query: 168 FE-------RFSLQPMDGPFLEE-------NTNLAISYCFQ--NPKW---RLSVQTH 205
LQP + E T+ + + +W R+ Q H
Sbjct: 169 EASARYPDLPLYLQPGNPEVDPELPVDLNQATDRLLWLIEKVTADQWYTPRVLPQLH 225
>gi|329925161|ref|ZP_08280104.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. HGF5]
gi|328939994|gb|EGG36327.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. HGF5]
Length = 264
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 88/240 (36%), Gaps = 51/240 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG GR +F R +GC+ +C +CD+ F G+
Sbjct: 27 PVMEIFGPTVQGEGMVVGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DGSAKD 74
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
++ ++ +E + G + + L+GG P LL L+ L++ G +AVET G+
Sbjct: 75 SISLLSADEIWQELYRLGGERFDHVTLSGGNPALLPQLGALVDELHRYGITVAVETQGSR 134
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE------------------- 161
ID + +SPK +L + +++ P
Sbjct: 135 WQDWLNHIDEVTISPKPPSSGMDTDWGKLDDIVSRLSARPPGRTFSLKVVVFDDKDLTYA 194
Query: 162 --NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK--------------WRLSVQTH 205
+ + F LQ + +T +S+ + R+ Q H
Sbjct: 195 ETVHERYPNVPFYLQTGNPDVGTGDTTSLVSHLLDRYESLVDAVMQSDRLNDVRVLPQLH 254
>gi|254674031|emb|CBA09815.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 208
Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 36/204 (17%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G AVF R CNL G +CDTD++ G ++ +
Sbjct: 26 GMPAVFVRLGKCNLACG-----------WCDTDYLTF-----GMMSLSDI------LGCL 63
Query: 81 GEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
R ++TGGEP +Q + + + L G+ + +ETNG P ID++ SPKA
Sbjct: 64 KTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVATSPKACY 123
Query: 140 DLKIKGG-----QELKLVFPQVNVSPENYI--GFDFERFSLQPM--DGPFLEENTNLAIS 190
K + E+++V ++ + + L P DG +T I
Sbjct: 124 AAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSPCEQDGAMNIYDTIRQIG 183
Query: 191 YCFQNP----KWRLSVQTHKFIGI 210
P W+LSVQTHK+ GI
Sbjct: 184 ILNSRPDASVHWQLSVQTHKWAGI 207
>gi|78186318|ref|YP_374361.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273]
gi|78166220|gb|ABB23318.1| radical activating enzyme, putative [Chlorobium luteolum DSM 273]
Length = 223
Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 74/234 (31%), Gaps = 49/234 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ I EIF ++QGE AG F R +GC S CR+CDT + +
Sbjct: 4 TILQISEIFHSIQGESSFAGWPCTFIRLAGC-----------SHGCRYCDTTYAKTAERR 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
+ D I+E +TGGEPL Q L+ AL G + +ET G
Sbjct: 53 ------LSIGDTIDE---ARRYHAHLIEVTGGEPLEQPAVHKLLHALCDGGGGVMLETGG 103
Query: 121 TIE--------------------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV-- 158
+ + + + E K+V
Sbjct: 104 FLSVRDVDPRVHKVIDLKPPSSGRDKENCMENIDIALNAGEGERKRYEFKIVAADREDYL 163
Query: 159 ----SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
++ + + P+ G LA R+ +Q H++I
Sbjct: 164 WARGILKDTRLAEACTVMMGPIAGTIHPS--ELAGWILEDRLHVRMQLQLHRYI 215
>gi|182412684|ref|YP_001817750.1| radical SAM domain-containing protein [Opitutus terrae PB90-1]
gi|177839898|gb|ACB74150.1| Radical SAM domain protein [Opitutus terrae PB90-1]
Length = 231
Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF +LQGEG G +VF R SGCNL +C +CDT +
Sbjct: 3 ISEIFYSLQGEGLLTGVPSVFVRTSGCNL-----------RCNWCDTPYASWNPEGKPW- 50
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
++ ++ E + R+ VLTGGEP++ L L + I +ET T+ P
Sbjct: 51 ---RIEQIVRE--VQSHPTARHVVLTGGEPMIAKEIAELAAQLKGLHYHITIETAATVAP 105
Query: 125 PQGIDWI-CVSPK 136
+ +SPK
Sbjct: 106 EGIACDLASLSPK 118
>gi|73663319|ref|YP_302100.1| putative radical activating enzyme [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495834|dbj|BAE19155.1| putative radical activating enzyme [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 238
Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 84/243 (34%), Gaps = 47/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSSFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ ++ + + ++GG P L++ L+ + +G + A+ET
Sbjct: 49 SAKEDIRMMSAEEIYDQLYHIAGDSFNHVTISGGNPALIKGIQQLVDLFDDKGIQSALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ----------VNVSPENYIGF 166
G ID + +SPK L V Q V E+Y
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSKMKPNLPILDEVIEQCVPESLNLKVVIFDDEDYQFA 168
Query: 167 DFER-------FSLQP----MDGPFLEENTNL-------AISYCF---QNPKWRLSVQTH 205
F LQ +DG +E +T + + Q H
Sbjct: 169 KMIHHRYPTVPFYLQVGNPYLDGEHVEAHTEKLLSLYETLVDRVMVSSDMNNVYVLPQLH 228
Query: 206 KFI 208
+
Sbjct: 229 TLL 231
>gi|124027076|ref|YP_001012396.1| organic radical activating protein NrdG [Hyperthermus butylicus DSM
5456]
gi|123977770|gb|ABM80051.1| Organic radical activating enzyme, NrdG [Hyperthermus butylicus DSM
5456]
Length = 235
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/241 (24%), Positives = 90/241 (37%), Gaps = 62/241 (25%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ + E+F ++QGEG G +VF R +GCNL +C FCDT +
Sbjct: 14 TVLRVVEVFASIQGEGPFTGTYSVFVRLAGCNL-----------RCPFCDTRYAWS-LEA 61
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
G V++L + I E V+TGGEPLL L++ L G + +ETN
Sbjct: 62 GKPLGVEELVEEIAR------YEPSLVVITGGEPLLQRHPLNSLVEGLESLGLRVQLETN 115
Query: 120 GTIEPPQGIDWI-----CVSPKAGCDLKIKGGQELKLV---------FPQVNVSPENYIG 165
G + P + + VSPK V + + V+ E ++
Sbjct: 116 GILPAPARDEQLWRVYHVVSPKDVPVRVPGAKLHPSWVDYARATGRAWFKFLVANEQHVR 175
Query: 166 FDFE----------RFSLQPMDGPFLE---------ENTNLAISYCFQNPKWRL--SVQT 204
E R + P+ L+ +LA+ KWRL S +
Sbjct: 176 EVAEYVAKLGIPRSRVYIMPLTPEKLDMKELLELHSRIASLAV-------KWRLNFSPRL 228
Query: 205 H 205
H
Sbjct: 229 H 229
>gi|261403228|ref|YP_003247452.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
gi|261370221|gb|ACX72970.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
Length = 243
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 62/254 (24%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV--------GI 57
I+EIF ++ GEG + GR +F RF+GC L C +CD +
Sbjct: 2 IREIFNSIMGEGKYIGRRFIFIRFAGCPLN-----------CLYCDEEHKKHVNLVEQYP 50
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
K + N++ D+I+ + TGGEPLL + + L G+
Sbjct: 51 SSGKFEKQNLESEEDIIKAVNKLKTPDLFSVSFTGGEPLLYHKEIKEISKILKNLGYRTF 110
Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-- 172
+E+NG D + K K G +E K ++ + + + + ++
Sbjct: 111 LESNGIFPERVFHFDIASIDIKLKDHFKNIGEEEYKKIYKNELKTIKKFYNMGTDVYAKI 170
Query: 173 ------------------------------------LQPMDGPFLEENTNLAISYCFQNP 196
+QP L + + N
Sbjct: 171 VITKDSKINDLVEISKDLSDIGDVMLCIQPATPINNIQPPSQKTLFKIMEACGEHLKDN- 229
Query: 197 KWRLSVQTHKFIGI 210
L++Q HK + I
Sbjct: 230 -VMLTLQIHKILNI 242
>gi|56698570|ref|YP_168947.1| radical SAM domain-containing protein [Ruegeria pomeroyi DSS-3]
gi|56680307|gb|AAV96973.1| radical SAM domain protein [Ruegeria pomeroyi DSS-3]
Length = 239
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 78/241 (32%), Gaps = 48/241 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MTTLRIAEIFGPTIQGEGAVIGAPTVFVRAGGCD-----------YRCSWCDSLHA-VDS 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ + E L+GG P +Q PLI+ +G+ A+ET
Sbjct: 49 AYRDTWTAMTTEQVWAEVARLSGGVPLTVSLSGGNPAIQDFGPLIEMGKAQGYRFALETQ 108
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKL---------------VFPQVNVSPEN 162
G++ + + + +SPK + VF + +
Sbjct: 109 GSVARGWFRELSPLILSPKPPSSGETVDWDRFADCIARARDAVTVIKIVVFDEADYLWAR 168
Query: 163 YIGFDFER--FSLQP-MDGPFLEENTNLAISY--CFQNPKW---R-LS---------VQT 204
+ F LQP P + + AI +W R LS Q
Sbjct: 169 EVAARFPNLPIYLQPGNHTPPPPDAEDAAIDMDGIMARYEWLIGRALSDRWFTPTILPQL 228
Query: 205 H 205
H
Sbjct: 229 H 229
>gi|283780242|ref|YP_003370997.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068]
gi|283438695|gb|ADB17137.1| Radical SAM domain protein [Pirellula staleyi DSM 6068]
Length = 228
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 29/200 (14%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I E++ +LQGEG G +VF R SGCNL +C FCDT F Q +G +
Sbjct: 3 IAELYTSLQGEGRLTGTPSVFVRASGCNL-----------RCWFCDTPFTSWQP-EGEDW 50
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
+++++ ++ K+ + V+TGGEP+L VPL Q L + G I +ET GT+
Sbjct: 51 SLEEIVHQVQA------KQTSHVVITGGEPMLYSEMVPLTQELKRLGLHITIETAGTLHL 104
Query: 125 PQGIDWICVSPK-----AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
D + +SPK + + V Q +V + +D++ +
Sbjct: 105 EVACDLMSISPKLASSTPSVARAGRWAARHERVRHQPHVIRKMIAEYDYQLKFVI----- 159
Query: 180 FLEENTNLAISYCFQNPKWR 199
E + S+ + P+ R
Sbjct: 160 DSESDFAELDSWLEEFPEVR 179
>gi|146329949|ref|YP_001210257.1| BcepGomrgp37 [Burkholderia phage BcepGomr]
gi|145321125|gb|ABP63608.1| BcepGomrgp37 [Burkholderia phage BcepGomr]
Length = 260
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/254 (23%), Positives = 88/254 (34%), Gaps = 69/254 (27%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ IF T+QGEG + GR AVF R +GCNL C CDT++ + R
Sbjct: 22 VHSIFYTIQGEGPYVGRPAVFIRLAGCNLQ-----------CPGCDTEYSARK-----RM 65
Query: 66 NVDQLADLIEEQWITGEK-------------EGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
+ ++ ++ T + V+TGGEP Q PLI L+ G+
Sbjct: 66 GLLEILTAVQTAIYTRPRARFALEPAFERKIPRPLIVITGGEPFRQSLFPLIWKLSGLGY 125
Query: 113 EIAVETNG--------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-- 162
++ +E+NG E P I L K V + V P +
Sbjct: 126 KVQIESNGTLAPLAGPFEEWPPFEVVISPKAGKVAALLHHRIIAYKYVLSEGTVDPADGL 185
Query: 163 --------------YIGFDFERFSLQPMD--GP------------FLEENTNLAISYCFQ 194
+ GF +QP + P + N AI
Sbjct: 186 PTSVLGLPAAPARPHQGFAGT-VYVQPAEHYWPMVDASERVTHHAENDANLVAAIDVAMT 244
Query: 195 NPKWRLSVQTHKFI 208
+ L +QTHK I
Sbjct: 245 -FGYTLCLQTHKMI 257
>gi|296122194|ref|YP_003629972.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
gi|296014534|gb|ADG67773.1| Radical SAM domain protein [Planctomyces limnophilus DSM 3776]
Length = 260
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I E FL++QGEG G + F R +GCNL +C FCDT + +G
Sbjct: 20 RLRIAETFLSVQGEGALTGVRSFFIRTTGCNL-----------RCWFCDTPYTSW-TAEG 67
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
+D+L + +LTGGEPLLQ V L AL G I VET GT
Sbjct: 68 NWQTIDELLAQATA------SGAEHVILTGGEPLLQPAIVELSHALKAAGLHITVETAGT 121
Query: 122 IEPPQGIDWICVSPK 136
++ P D + +SPK
Sbjct: 122 VDRPVMADLMSISPK 136
>gi|194337298|ref|YP_002019092.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
gi|194309775|gb|ACF44475.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
Length = 223
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 82/233 (35%), Gaps = 49/233 (21%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+I EIF ++QGE AG F R +GC C CDT + G K
Sbjct: 5 TLNISEIFHSIQGESSFAGWPCAFIRLAGC-----------GHGCIGCDTAYAEHDGIKL 53
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
G +++ ++ + +TGGEPLLQ V L++ L ++ +ET G
Sbjct: 54 G-------IEVVVQRALA--FRAPLIEVTGGEPLLQPAVYSLMRQLCDLEQKVLLETGGF 104
Query: 122 IE----PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV---------NVSPENYIGFDF 168
+ + I + P + + ++L V + + +++
Sbjct: 105 LSVAEVDCRVHKIIDLKPPSSGVCDQNNPENIELALAAVLPHRQNFEFKIVVASREDYEW 164
Query: 169 ERFSLQ-------------PMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
R LQ G LA + R+ +Q HK+I
Sbjct: 165 ARALLQEHGLMDSFTIMMGVSFGKLDPA--ELAEWMLRDRLRARMQLQLHKYI 215
>gi|258511917|ref|YP_003185351.1| Radical SAM domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478643|gb|ACV58962.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 253
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/238 (18%), Positives = 78/238 (32%), Gaps = 53/238 (22%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T++GEG AG F R CNL +C +CDT +
Sbjct: 28 LPMVEIFETVEGEGTRAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPAF 76
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE----IAVETN 119
+ ++A+ +E LTGGEPL+ + G + VETN
Sbjct: 77 HATLREIAEQVEA------FGWPNVCLTGGEPLIHRHKSQLLIEAIAGIPSVRDVHVETN 130
Query: 120 GTIEPPQGIDWICVSPKAGCDLKI-----------------------KGGQELKLVFP-Q 155
G I+ + S + ++ E+K V +
Sbjct: 131 GAIDVRPYVRLRDASARLRDVVRFIVDYKLPASGEESRMIGEHLTSLSERDEVKFVIADE 190
Query: 156 VNVSPENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + + + P+ + ++ ++ +LS+Q HK I
Sbjct: 191 RDFARALEVMEAHPTRATILMSPVWETMPPRDL---VALILKHRLRDVKLSLQLHKVI 245
>gi|254469727|ref|ZP_05083132.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Pseudovibrio sp. JE062]
gi|211961562|gb|EEA96757.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Pseudovibrio sp. JE062]
Length = 246
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 82/245 (33%), Gaps = 49/245 (20%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M SI EIF T+QGEG G VF R GC+ +C +CDT +
Sbjct: 7 MSKLSISEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDTLHA-VDS 54
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++ D+ ++ + L+GG P +Q LI +G++ A+ET
Sbjct: 55 AYRHTWDQMDSEDVWKKVEELSCGQPITVSLSGGNPAIQDFSKLIALGKAKGYKFAIETQ 114
Query: 120 GT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------------NVS 159
G+ + +D + +SPK ++ + + +
Sbjct: 115 GSVARDWFADLDTLVLSPKPPSSGEVVNWDKFDACLDAALNTATCVIKVVVFDDVDYDWA 174
Query: 160 PENYIGFDFERFSLQP-MDGPFLEENTNLAISY--CFQNPKW-------------RLSVQ 203
E + + LQP P E+ + I W R+ Q
Sbjct: 175 KEVSERYPYLPMYLQPGNHTPPPPEDDDAQIDMDGIMDRMHWLVDKTVSDQWFKPRILPQ 234
Query: 204 THKFI 208
H +
Sbjct: 235 LHVLL 239
>gi|302392164|ref|YP_003827984.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
gi|302204241|gb|ADL12919.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
Length = 240
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 83/250 (33%), Gaps = 60/250 (24%)
Query: 1 MKL----YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
M++ + EIF ++ GEG AG + F R +GCNL +C +CDT +
Sbjct: 1 MEMEGVKLPVVEIFNSISGEGISAGEIVTFVRVAGCNL-----------RCDYCDTMYSY 49
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
+ Q+ + I + + TGGEPL + L L K+GFE+
Sbjct: 50 QD-EEYELLTPQQIVNRI------NNFGTQQVICTGGEPLEEDKPKRYLPLYLAKQGFEV 102
Query: 115 AVETNGTIEPPQGI----------------DWICVSPKAGCDLKIKG------GQELKLV 152
+ETNG+ D C S E+K V
Sbjct: 103 RIETNGSWSVYNQQELQKFGLDGEGINYTLDIKCPSSNMAEYNLFTNLEQLGLNDEIKFV 162
Query: 153 FPQVNVSPENYIGFDFER---------FSLQPMDGPFLEENTNLAIS-----YCFQNPKW 198
+ D + + P+ + + + N K
Sbjct: 163 VQDKSDIDYALKVIDDYKNELSKQEIVINFSPVFEELAPKKLVSILQEHQTYFAQFNLKV 222
Query: 199 RLSVQTHKFI 208
RLS+Q HK I
Sbjct: 223 RLSIQLHKLI 232
>gi|15669841|ref|NP_248655.1| coenzyme PQQ synthesis protein III [Methanocaldococcus jannaschii
DSM 2661]
gi|41688758|sp|Q59039|Y1645_METJA RecName: Full=Uncharacterized protein MJ1645
gi|1592229|gb|AAB99666.1| coenzyme PQQ synthesis protein III isolog (Haemophilus influenzae}
[Methanocaldococcus jannaschii DSM 2661]
Length = 243
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/253 (20%), Positives = 82/253 (32%), Gaps = 62/253 (24%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-------- 57
I+EIF ++ GEG + GR +F RF+GC L C +CD + G
Sbjct: 2 IREIFNSIMGEGKYIGRRFIFVRFAGCPLN-----------CVYCDEESKGYFNRVEKIP 50
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
+ ++ D+I + TGGEPLL + + L +G+
Sbjct: 51 GSGEFETLQKMEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEIAEILKDKGYRTF 110
Query: 116 VETNGTIE---PPQGIDWICVSPKAGCDLKIK------GGQELKLV-------------- 152
+E+NG I I + K + ELK +
Sbjct: 111 LESNGMFPERIFYFDIASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLYNLNSDIYAKV 170
Query: 153 -------FPQVNVSPENYIGFDFERFSLQPM---------DGPFLEENTNLAISYCFQNP 196
V + ++ +QP+ L E Y N
Sbjct: 171 VIMEETNIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEYLKDN- 229
Query: 197 KWRLSVQTHKFIG 209
L++Q HK++G
Sbjct: 230 -VMLTIQMHKYLG 241
>gi|253576603|ref|ZP_04853931.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. oral taxon 786 str. D14]
gi|251844017|gb|EES72037.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. oral taxon 786 str. D14]
Length = 253
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 79/240 (32%), Gaps = 51/240 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+
Sbjct: 16 PVMEIFGPTVQGEGMVIGQKTMFVRTAGCD-----------YRCSWCDSAFTW-DGSAKE 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
A+++ E G + L+GG P LL L++ L+ G +AVET G+
Sbjct: 64 MIRRLTPAEILGELRDIGGDRFSHVTLSGGNPALLPQLASLVELLHAEGITVAVETQGSR 123
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE----------------NYI 164
+D + +SPK L + ++ P Y
Sbjct: 124 WQDWLAEVDQVTLSPKPPSSGMDTNWDVLDDIVARLAARPHPLAVSLKVVVFDDDDLAYA 183
Query: 165 GFDFERFSLQPMD----------------GPFLEENTNLAISYCFQNP---KWRLSVQTH 205
R+ PM L I P R+ Q H
Sbjct: 184 KRVHTRYPNVPMYVQVGNPDVKRMDIQEHASDLLRRYEALIDKVMATPDLNNVRVLPQLH 243
>gi|52079923|ref|YP_078714.1| QueE [Bacillus licheniformis ATCC 14580]
gi|52785294|ref|YP_091123.1| YkvL [Bacillus licheniformis ATCC 14580]
gi|319646260|ref|ZP_08000490.1| YkvL protein [Bacillus sp. BT1B_CT2]
gi|52003134|gb|AAU23076.1| QueE [Bacillus licheniformis ATCC 14580]
gi|52347796|gb|AAU40430.1| YkvL [Bacillus licheniformis ATCC 14580]
gi|317392010|gb|EFV72807.1| YkvL protein [Bacillus sp. BT1B_CT2]
Length = 243
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 81/243 (33%), Gaps = 51/243 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 6 PVLEIFGPTVQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGSAKK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
++ E G + ++GG P LL+ LI L + G A+ET G
Sbjct: 54 DIKWMTAEEVYESLKDIGGNAFSHVTISGGNPALLKQLDGLISLLKENGIRTALETQGTF 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---------------------VS 159
+ GID + +SPK L + ++ +
Sbjct: 114 YQDWFTGIDDLTISPKPPSSNMKTDFNRLDHIVDRLKEHGRAAAASLKVVIFTADDLQFA 173
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTH 205
+ + + F LQ + E+ + Q + R+ Q H
Sbjct: 174 KQVHQRYPDIPFFLQVGNDDVHTEDQERLVERLLQKYEQLVEAVTRDPELNRVRVLPQLH 233
Query: 206 KFI 208
I
Sbjct: 234 TLI 236
>gi|254489194|ref|ZP_05102398.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Roseobacter sp. GAI101]
gi|214042202|gb|EEB82841.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Roseobacter sp. GAI101]
Length = 245
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 77/244 (31%), Gaps = 48/244 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 7 MTQLRIAEIFGPTIQGEGALIGEPTVFVRTGGCD-----------YRCSWCDSLHA-VDS 54
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ + + + L+GG P +Q LI +G+ A ET
Sbjct: 55 AFRHTWAPMTTEAVWADVVRLSKGRPLTVSLSGGNPAIQDFTALIARGQAQGYRFACETQ 114
Query: 120 GT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV----------------NVSPE 161
G+ +D + +SPK ++ + +
Sbjct: 115 GSIAKPWFADLDTLVLSPKPPSSGEVVDWDAFDACLSAAKGAKATANIVMKIVIFDDADY 174
Query: 162 NYIGFDFERF-----SLQPMDGPFLE-------ENTNLAISYCFQ--NPKW---RLSVQT 204
++ +R+ LQP + ++ + + N W R+ Q
Sbjct: 175 DWARAAADRYPALPLYLQPGNPEVDPDVPVDPQRLSDRLLWLVDKTMNDGWFAPRVLPQL 234
Query: 205 HKFI 208
H +
Sbjct: 235 HVLL 238
>gi|51948899|gb|AAU14370.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE G VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEIFHSLQGETRTTGLPTVFVRLTGCPL-----------RCQYCDSAYAFT-- 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
G + +D + RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 48 -GGTIHTLDDIM------GQVATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|229541150|ref|ZP_04430210.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus coagulans 36D1]
gi|229325570|gb|EEN91245.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus coagulans 36D1]
Length = 241
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 37/224 (16%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G + G
Sbjct: 6 PVIEIFGPTIQGEGMVIGKKTMFVRTAGCD-----------YACSWCDSAFTW-NGEEKG 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
R + ++ ++ TG + + ++GG PLL L+ L AVET G+
Sbjct: 54 RIALMTAEEIFQKLKETGGENFSHVTISGGNPLLLKGLGELVDLLKTHQIRTAVETQGSR 113
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------------NVSPE 161
+D + +SPK + L + Q+ + + +
Sbjct: 114 WQNWLPDVDDVTISPKPPSSGMHTDFETLDRMIEQLTLAGSHFCLKVVVFDDKDFDYAKK 173
Query: 162 NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--RLSVQ 203
+ + F LQ + + + +W L++Q
Sbjct: 174 IHKRYPVVPFYLQVGNPDIALPDRDALAKMLIGRYEWLVNLTLQ 217
>gi|145591319|ref|YP_001153321.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145283087|gb|ABP50669.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 216
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 83/227 (36%), Gaps = 48/227 (21%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF +LQGEG + G+ AVF R +GC +C +CDT + + G
Sbjct: 2 RVLEIFASLQGEGVNLGKPAVFVRLAGCP-----------IRCAYCDTKYSW-DFSAGVE 49
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK-RGF-EIAVETNGTI 122
+V+++ + G + V+TGGEPL+ L RG + VET+G
Sbjct: 50 MSVEEVFAKAASLGVRG-----HVVVTGGEPLIWQRRGLENLACALRGLGAVEVETSGAY 104
Query: 123 ----EPPQGIDWICVSPKAGCDLKIKGGQE---------LKLVFPQVNVSPE-----NYI 164
E +D+ VSPK K V E
Sbjct: 105 SPTPELDSCVDYYDVSPKLSNAGVKAPFSPFYAKSPKAWFKFVVRDAADVEEALQFAEVW 164
Query: 165 GFDFERFSLQPM------DGPFLEENTNLAISYCFQNPKWRLSVQTH 205
G ER L PM G L+ + A+ R++ + H
Sbjct: 165 GIPKERVLLMPMAQSAEDHGEVLKRIWDAAV-----RLGLRVTPRLH 206
>gi|254504058|ref|ZP_05116209.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
gi|222440129|gb|EEE46808.1| radical SAM domain protein [Labrenzia alexandrii DFL-11]
Length = 242
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 81/241 (33%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ VF R GC+ +C +CDT +
Sbjct: 7 RVNEIFGPTIQGEGALIGQPTVFVRTGGCD-----------YRCSWCDTLHA-VDSAYRD 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
++ ++ + I + L+GG P +Q LI+ + G+ A+ET G+
Sbjct: 55 DWHPMTPQAILMQIEILSGGKPLMVSLSGGNPAIQPLGSLIELGKREGYRFALETQGSIA 114
Query: 122 IEPPQGIDWICVSPK---AGCDLKIKGGQE------------LKLVFPQVNVSPENY--- 163
+ +D + +SPK +G D + E LK V
Sbjct: 115 KDWFAALDVLTLSPKPPSSGMDTDWQKLAECVEAAGSETQTVLKTVIFDDADYDYAKDLA 174
Query: 164 IGFDFERFSLQPMDGPFLEENTNLA-ISY--CFQNPKW-------------RLSVQTHKF 207
+ LQP + T A I +W + Q H
Sbjct: 175 ARYPELPLYLQPGNHTPPSPATADAPIDMPGIMDRMRWLVDKVAGDRWYTPTVLPQLHTL 234
Query: 208 I 208
I
Sbjct: 235 I 235
>gi|297530832|ref|YP_003672107.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. C56-T3]
gi|297254084|gb|ADI27530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. C56-T3]
Length = 244
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+
Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCRWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
++ G + R+ ++GG PLL LI L+++G +AVET
Sbjct: 51 AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
G+ ID + +SPK L + ++ +
Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMNTDWSALDQIIERLQADQSRVRRISLKVVVF 166
>gi|152974870|ref|YP_001374387.1| radical SAM domain-containing protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023622|gb|ABS21392.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 238
Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 82/240 (34%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ +E G + + ++GG P LL+ L++ L + A+ET
Sbjct: 49 SAKDQIRQMTPEEIWKELIEIGGENFSHVTISGGNPVLLKHMKELLERLKENNIRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYI 164
G+ ID I +SPK L LV ++ + Y
Sbjct: 109 QGSKWQEWLLDIDEITISPKPPSSKMKTNFTMLDLVVERLVDKNMSLKVVIFDDDDFEYA 168
Query: 165 GFDFER-----FSLQP--------MDGPFLEENTNLAISYC------FQNPKWRLSVQTH 205
ER F LQ D + + + ++ Q H
Sbjct: 169 KNVHERYPHVPFFLQVGNDDTKTAEDAVLIPKLLQKYEWLIEKAVHSKEMNDVKVLPQLH 228
>gi|51948733|gb|AAU14287.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948737|gb|AAU14289.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948765|gb|AAU14303.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948771|gb|AAU14306.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948783|gb|AAU14312.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948793|gb|AAU14317.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948795|gb|AAU14318.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948797|gb|AAU14319.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948799|gb|AAU14320.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948801|gb|AAU14321.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948811|gb|AAU14326.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948813|gb|AAU14327.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948817|gb|AAU14329.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948819|gb|AAU14330.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948825|gb|AAU14333.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948829|gb|AAU14335.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948835|gb|AAU14338.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948837|gb|AAU14339.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948841|gb|AAU14341.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948857|gb|AAU14349.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948859|gb|AAU14350.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948861|gb|AAU14351.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948863|gb|AAU14352.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948865|gb|AAU14353.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948867|gb|AAU14354.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948873|gb|AAU14357.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948887|gb|AAU14364.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948889|gb|AAU14365.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948891|gb|AAU14366.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948893|gb|AAU14367.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948895|gb|AAU14368.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948897|gb|AAU14369.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948905|gb|AAU14373.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFT-- 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
G + +D + + RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 48 -GGTIHTLDDIMGQVAA------YRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|325062819|gb|ADY66509.1| radical activating protein [Agrobacterium sp. H13-3]
Length = 251
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 76/241 (31%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CDT +
Sbjct: 16 RISEIFGPTIQGEGLLIGLPTVFVRTGGCD-----------YRCSWCDTLHA-VDSEYRD 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + +E L+GG P +Q LI G+ A+ET G+
Sbjct: 64 TWKPMSVEAIWQEVRRLSGGVPLTVSLSGGNPAIQPLGQLIAKGQGEGYRFALETQGSIA 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--------------- 166
+ +D + +SPK Q + P+ +
Sbjct: 124 KDWFGDLDHLVLSPKPPSSGMETDWQAFEDCLAAAGDGPQVALKIVVFDDADYAYAKAAS 183
Query: 167 -DFER--FSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
F LQP + P ++N + I W R+ Q H
Sbjct: 184 ARFPHLPIYLQPGNHTPPPPDDDNARVDIDGIMDRMLWLVDKVSEDRWFSARVLPQLHVL 243
Query: 208 I 208
+
Sbjct: 244 L 244
>gi|239832976|ref|ZP_04681305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ochrobactrum intermedium LMG 3301]
gi|239825243|gb|EEQ96811.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ochrobactrum intermedium LMG 3301]
Length = 246
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 47/221 (21%), Positives = 76/221 (34%), Gaps = 36/221 (16%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 8 TRIRIAEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESR 55
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + + +E + L+GG P +Q PLI+ K G+ A+ET G
Sbjct: 56 FRHEWKTMSVEAIWDEVTALSRNKPLTVSLSGGNPAIQPLGPLIEHGRKHGYRFALETQG 115
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQELK----------------LVFPQVNVSPEN 162
+ +D + +SPK L ++F + +
Sbjct: 116 SVVQGWFSALDTLVLSPKPPSSAMDTDFDALAACIEAAGNTPRTVLKFVIFDDADYAFAK 175
Query: 163 YIGFDFERF--SLQP-MDGPFLEENTNLAISY--CFQNPKW 198
+ LQP P E + AI + +W
Sbjct: 176 EVANRHPHLPVYLQPGNHTPPPPEANDAAIDIDGIMRRMEW 216
>gi|311030030|ref|ZP_07708120.1| radical SAM domain-containing protein [Bacillus sp. m3-13]
gi|311032350|ref|ZP_07710440.1| radical SAM domain-containing protein [Bacillus sp. m3-13]
Length = 239
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 48/241 (19%)
Query: 1 MKLY-SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M + EIF T+QGEG G+ +F R +GC+ +C +CD+ F
Sbjct: 1 MSSLIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCSWCDSAFTW-D 48
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117
G+ + ++ E+ G K + ++GG P LL+ L+Q L++ ++A+E
Sbjct: 49 GSAKDDIVMMSHEEIYEQLVEIGGKAFNHVTISGGNPALLKNIGKLVQLLHENDIKVALE 108
Query: 118 TNGTIEPPQGIDW--ICVSPKAGCDLKIKGGQELKLVFPQVN---------VSPENYIGF 166
T G+ ++ + +SPK L+ + +V V E+ + +
Sbjct: 109 TQGSKWQDWLMEIDDLTISPKPPSSGMDTNFSILRDLLERVKNSSVSLKVVVFDEDDLAY 168
Query: 167 DFERFSLQP---------MDGPFLEENTNLA----------ISYCFQN---PKWRLSVQT 204
+ L P D E++ L I + R+ Q
Sbjct: 169 SKKVHKLYPDIAFYVQVGNDDTTTEDDQKLISNLLAKYEWLIDQVMNDDEMNNVRVLPQL 228
Query: 205 H 205
H
Sbjct: 229 H 229
>gi|99081885|ref|YP_614039.1| radical SAM family protein [Ruegeria sp. TM1040]
gi|99038165|gb|ABF64777.1| Radical SAM [Ruegeria sp. TM1040]
Length = 235
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 78/241 (32%), Gaps = 47/241 (19%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDSLHA-VDSA 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + + +E + L+GG P +Q PLI G+ A ET G
Sbjct: 49 HRHSWAAMETEAVWQEVRRLSGDQPLTVSLSGGNPAIQDFGPLIARGKAAGYRFACETQG 108
Query: 121 --TIEPPQGIDWICVSPKAGCD-----------LKIKGGQELKLVFPQVNVSPENYIGFD 167
++ + +SPK + G + V V +Y+
Sbjct: 109 SIPRPWFSDLETLVLSPKPPSSGEDVDWGAFIACRKIGAGARQQVMKIVIFDEADYLWAR 168
Query: 168 FER-------FSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP + E T + ++ + +W R+ Q H
Sbjct: 169 EVHRRHSDLPLYLQPGNPEVDPE-TPVDLNAQAERLRWLTERAMGERWFAPRILPQLHVL 227
Query: 208 I 208
I
Sbjct: 228 I 228
>gi|306831581|ref|ZP_07464739.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304426366|gb|EFM29480.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 237
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 83/241 (34%), Gaps = 52/241 (21%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCD-----------YHCDWCDSAFTWDGSEK 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
R VD++ + +++ Y L+GG P L L+ L RG +A+ET
Sbjct: 56 PKRMTVDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-------------- 163
G+ + ID + +SPK + L + Q+ +
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLKKDQITFKIPVFDDADLAFAK 170
Query: 164 ---IGFDFERFSLQ---P-------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHKF 207
+ + L P + L+ L +P+W R+ Q H
Sbjct: 171 MIQKRYQPDVLYLSAGNPEPHASGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLHTL 229
Query: 208 I 208
+
Sbjct: 230 L 230
>gi|251798291|ref|YP_003013022.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. JDR-2]
gi|247545917|gb|ACT02936.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus sp. JDR-2]
Length = 242
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 49/241 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
K + EIF T+QGEG G+ +F R +GC+ C +CD+ F GT
Sbjct: 4 KRIPVMEIFGPTVQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGT 51
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
+ ++++ E G + L+GG P LL+ L+ AL++ G +AVET
Sbjct: 52 GKDDTRMLTASEIVGELRELGGNTFSHVTLSGGNPALLKNADELVDALHRDGVRVAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------VSPENYIGF 166
G+ ID + +SPK + L + ++ V E + +
Sbjct: 112 GSRWQDWLLAIDELTLSPKPPSSGMTTNWEVLDEIVARLAGGSNPFSLKVVVFDEQDLAY 171
Query: 167 DFE--------RFSLQ-----PMDGPFLEENTNLA------ISYCFQNP---KWRLSVQT 204
+ F +Q ++G + L I + R+ Q
Sbjct: 172 AAKVHNRYPGVTFFVQTGNDDLIEGDNGKLAAKLIERYEWLIDQVMKREDMTNVRVLPQL 231
Query: 205 H 205
H
Sbjct: 232 H 232
>gi|30261442|ref|NP_843819.1| radical SAM domain-containing protein [Bacillus anthracis str.
Ames]
gi|47526631|ref|YP_017980.1| radical sam domain-containing protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49184276|ref|YP_027528.1| radical SAM domain-containing protein [Bacillus anthracis str.
Sterne]
gi|52143995|ref|YP_082833.1| radical SAM domain-containing protein [Bacillus cereus E33L]
gi|65318711|ref|ZP_00391670.1| COG0602: Organic radical activating enzymes [Bacillus anthracis
str. A2012]
gi|118476912|ref|YP_894063.1| radical SAM domain-containing protein [Bacillus thuringiensis str.
Al Hakam]
gi|165870409|ref|ZP_02215064.1| radical SAM domain protein [Bacillus anthracis str. A0488]
gi|167634333|ref|ZP_02392654.1| radical SAM domain protein [Bacillus anthracis str. A0442]
gi|167639360|ref|ZP_02397632.1| radical SAM domain protein [Bacillus anthracis str. A0193]
gi|170686800|ref|ZP_02878020.1| radical SAM domain protein [Bacillus anthracis str. A0465]
gi|170706317|ref|ZP_02896778.1| radical SAM domain protein [Bacillus anthracis str. A0389]
gi|177651608|ref|ZP_02934397.1| radical SAM domain protein [Bacillus anthracis str. A0174]
gi|190568020|ref|ZP_03020930.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I]
gi|196035271|ref|ZP_03102676.1| radical SAM domain protein [Bacillus cereus W]
gi|196040614|ref|ZP_03107913.1| radical SAM domain protein [Bacillus cereus NVH0597-99]
gi|196046471|ref|ZP_03113696.1| radical SAM domain protein [Bacillus cereus 03BB108]
gi|218902549|ref|YP_002450383.1| radical SAM domain protein [Bacillus cereus AH820]
gi|225863305|ref|YP_002748683.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus cereus 03BB102]
gi|227815811|ref|YP_002815820.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. CDC 684]
gi|229604565|ref|YP_002865855.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. A0248]
gi|254682495|ref|ZP_05146356.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. CNEVA-9066]
gi|254726158|ref|ZP_05187940.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. A1055]
gi|254733911|ref|ZP_05191625.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. Western North America USA6153]
gi|254740399|ref|ZP_05198090.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. Kruger B]
gi|254753789|ref|ZP_05205824.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. Vollum]
gi|254758886|ref|ZP_05210913.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. Australia 94]
gi|30255296|gb|AAP25305.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. Ames]
gi|47501779|gb|AAT30455.1| radical SAM domain protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178203|gb|AAT53579.1| radical SAM domain protein [Bacillus anthracis str. Sterne]
gi|51977464|gb|AAU19014.1| radical SAM domain protein [Bacillus cereus E33L]
gi|118416137|gb|ABK84556.1| preQ(0) biosynthesis protein QueE [Bacillus thuringiensis str. Al
Hakam]
gi|164713904|gb|EDR19426.1| radical SAM domain protein [Bacillus anthracis str. A0488]
gi|167512799|gb|EDR88173.1| radical SAM domain protein [Bacillus anthracis str. A0193]
gi|167530221|gb|EDR92947.1| radical SAM domain protein [Bacillus anthracis str. A0442]
gi|170128851|gb|EDS97717.1| radical SAM domain protein [Bacillus anthracis str. A0389]
gi|170669323|gb|EDT20066.1| radical SAM domain protein [Bacillus anthracis str. A0465]
gi|172082886|gb|EDT67949.1| radical SAM domain protein [Bacillus anthracis str. A0174]
gi|190560754|gb|EDV14729.1| radical SAM domain protein [Bacillus anthracis Tsiankovskii-I]
gi|195991948|gb|EDX55911.1| radical SAM domain protein [Bacillus cereus W]
gi|196022655|gb|EDX61337.1| radical SAM domain protein [Bacillus cereus 03BB108]
gi|196028404|gb|EDX67012.1| radical SAM domain protein [Bacillus cereus NVH0597-99]
gi|218535375|gb|ACK87773.1| radical SAM domain protein [Bacillus cereus AH820]
gi|225789486|gb|ACO29703.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus cereus 03BB102]
gi|227002910|gb|ACP12653.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. CDC 684]
gi|229268973|gb|ACQ50610.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus anthracis str. A0248]
Length = 238
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P+L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER- 170
G+ ID I +SPK Q+L V ++ + + +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYA 168
Query: 171 -----------FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPDVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 228
>gi|163738317|ref|ZP_02145732.1| Radical SAM [Phaeobacter gallaeciensis BS107]
gi|161388238|gb|EDQ12592.1| Radical SAM [Phaeobacter gallaeciensis BS107]
Length = 265
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 76/239 (31%), Gaps = 49/239 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 31 TTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDSLHA-VDSR 78
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ ++ +E + L+GG P +Q PLI + G+ A ET G
Sbjct: 79 YRDTWVPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 138
Query: 121 --TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENYIG 165
+ +D + +SPK Q+ + ++
Sbjct: 139 SISQPWFAQLDTLVLSPKPPSSGHKVDWQKFDHCLQAAKGCGQTVVKIVIFDDRDYDWAR 198
Query: 166 FDFER-----FSLQPMDGPFLE-ENTNLAISYCFQNPKW-------------RLSVQTH 205
+R LQP + + +L + + W R+ Q H
Sbjct: 199 VVAKRLPDLPLYLQPGNPEVDPDKPVDLTAAT--ERLHWLIEKVTADRWFTPRVLPQLH 255
>gi|49481559|ref|YP_035567.1| radical SAM domain-containing protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49333115|gb|AAT63761.1| radical SAM domain protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 238
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P+L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER- 170
G+ ID I +SPK Q+L V ++ + + +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSAMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYA 168
Query: 171 -----------FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPDVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 228
>gi|322667352|gb|EFY63516.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
Length = 141
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIE-PPQGIDWICVSPKAGC- 139
R+ V+TGGEP + +PL L K GF +ET+GT E W+ VSPK
Sbjct: 1 GYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVCCTPNTWVTVSPKVNMR 60
Query: 140 ------DLKIKGGQELKLV------FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
++ E+K ++ +LQP+ E+ T L
Sbjct: 61 GGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--EDATRL 118
Query: 188 AISYCFQNPKWRLSVQTHKFIGI 210
I C WRLS+QTHK++ I
Sbjct: 119 CIETCIAR-NWRLSMQTHKYLNI 140
>gi|51948725|gb|AAU14283.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948727|gb|AAU14284.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948729|gb|AAU14285.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948731|gb|AAU14286.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948735|gb|AAU14288.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948777|gb|AAU14309.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948779|gb|AAU14310.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948781|gb|AAU14311.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948785|gb|AAU14313.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948787|gb|AAU14314.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948789|gb|AAU14315.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948803|gb|AAU14322.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948807|gb|AAU14324.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948809|gb|AAU14325.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948821|gb|AAU14331.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948823|gb|AAU14332.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948827|gb|AAU14334.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948843|gb|AAU14342.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948849|gb|AAU14345.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948869|gb|AAU14355.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948879|gb|AAU14360.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948885|gb|AAU14363.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948901|gb|AAU14371.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948909|gb|AAU14375.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFT-- 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
G + +D + RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 48 -GGTIHTLDDIM------GQVATYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|330684947|gb|EGG96626.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus epidermidis VCU121]
Length = 237
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 33/204 (16%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ + G + ++GG P L++ L+ + + A+ET
Sbjct: 49 SAKEDIQLMSAEEIYNKLREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
G ID + +SPK L V Q + V + F+F
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSNMKPNLDILDSVIEQCVPESLNLKVVIFDEDDFEFA 168
Query: 170 R----------FSLQPMDGPFLEE 183
+ F LQ + EE
Sbjct: 169 KMIHHRYPSIPFYLQVGNPYLDEE 192
>gi|239636677|ref|ZP_04677679.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
warneri L37603]
gi|239598032|gb|EEQ80527.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
warneri L37603]
Length = 237
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ + G + ++GG P L++ L+ + + A+ET
Sbjct: 49 SAKEDIQLMSAEEIYNKLREIGGDNFNHVTISGGNPALIKGIQDLVDLFEEHHIQTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
G ID + +SPK L V Q + V + F+F
Sbjct: 109 QGSKFQPWMTQIDDLTISPKPPSSNMKPNLDILDSVIEQCVPESLNLKVVIFDEDDFEFA 168
Query: 170 R----------FSLQ 174
+ F LQ
Sbjct: 169 KMIHHRYPTIPFYLQ 183
>gi|51948805|gb|AAU14323.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ +
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFT-- 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
G + +D + + RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 48 -GGTIHTLDDIMGQVVA------YRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|314933021|ref|ZP_07840387.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus caprae C87]
gi|313654340|gb|EFS18096.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus caprae C87]
Length = 237
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 34/216 (15%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ EE G + ++GG P L++ L+ ++ A+ET
Sbjct: 49 SAKEDIRLLTAEEIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
G I+ + +SPK + L V Q + V N ++F
Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSMMKPNLDILDSVIEQCIDDTLNLKVVIFNEEDYEFA 168
Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQN 195
+ F LQ + P+LE+ +
Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLEDEVEHHTDKLLER 203
>gi|223042809|ref|ZP_03612857.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus capitis SK14]
gi|222443663|gb|EEE49760.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus capitis SK14]
Length = 237
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 16/159 (10%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ EE G + ++GG P L++ L+ ++ A+ET
Sbjct: 49 SAKEDIRLLTAEEIYEELLEVGGNHFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
G I+ + +SPK + L V Q
Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSMMKPNLNTLDSVIDQ 147
>gi|295401301|ref|ZP_06811273.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus thermoglucosidasius C56-YS93]
gi|312111879|ref|YP_003990195.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. Y4.1MC1]
gi|294976708|gb|EFG52314.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus thermoglucosidasius C56-YS93]
gi|311216980|gb|ADP75584.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. Y4.1MC1]
Length = 243
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 80/243 (32%), Gaps = 51/243 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
K + EIF T+QGEG G+ +F R +GC+ CR+CD+ F G+
Sbjct: 3 KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCRWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
G + E G R+ ++GG P L+Q L+ L +G IAVET
Sbjct: 51 AKGEIRQMTAGQIWERLCELGGDRFRHVTISGGNPVLIQALEELVLLLKNKGVRIAVETQ 110
Query: 120 GTIEPPQGIDW--ICVSPKAGCDLKIKGGQELKLVF---------------------PQV 156
G+ D + +SPK L +
Sbjct: 111 GSRWQDWLYDIDDVTISPKPPSSGMETDFAVLDHIIGKLVGAGRASHVSLKVVVFDDDDF 170
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSV 202
+ + + + F LQ + +E++ W R+
Sbjct: 171 DYAKIIHKRYPEISFYLQAGNDDIMEKDVAALREKLLAKLDWLVEKVAQSNELNDVRVLP 230
Query: 203 QTH 205
Q H
Sbjct: 231 QLH 233
>gi|147677735|ref|YP_001211950.1| organic radical activating enzymes [Pelotomaculum thermopropionicum
SI]
gi|146273832|dbj|BAF59581.1| organic radical activating enzymes [Pelotomaculum thermopropionicum
SI]
Length = 245
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 62/258 (24%), Positives = 83/258 (32%), Gaps = 64/258 (24%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-- 58
M+ Y + EIF ++QGEG G VF RF GCNL C FCDT + G
Sbjct: 1 MRAY-VSEIFSSVQGEGLLTGCRQVFIRFYGCNLN-----------CSFCDTKYGGPPAC 48
Query: 59 ---------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQAL 107
G N ++ + LTGGEPLL LI +
Sbjct: 49 CRIESLPAGGDFRYLPNPLKVGEAASAAASYDLSLHHSVSLTGGEPLLHTAFLKELIPLV 108
Query: 108 NKRGFEIAVETNGTIE------------PPQGIDWICVSPKAGCDLKIKGGQEL------ 149
I +ETNGT+ VS K ++
Sbjct: 109 KGTRHGIYLETNGTLPGNLLEVIDLIDMVSMDFKLPSVSGMPPFWEKHWDFLKIAASRKV 168
Query: 150 --KLVFPQVNVSPENYIGFDFER-------FSLQPMDGPF---------LEENTNLAISY 191
K+V Q E + +QP+ G + E LA+ +
Sbjct: 169 LVKVVVGQNTAHEEIEKSASIIKSVSSNIPMVIQPVTGSDGTLGITASRVLELQKLALKF 228
Query: 192 CFQNPKWRLSVQTHKFIG 209
R+ QTHK IG
Sbjct: 229 LND---VRVIPQTHKVIG 243
>gi|206977517|ref|ZP_03238411.1| radical SAM domain protein [Bacillus cereus H3081.97]
gi|217958918|ref|YP_002337466.1| radical SAM domain protein [Bacillus cereus AH187]
gi|222095075|ref|YP_002529135.1| radical sam domain protein [Bacillus cereus Q1]
gi|206744235|gb|EDZ55648.1| radical SAM domain protein [Bacillus cereus H3081.97]
gi|217067272|gb|ACJ81522.1| radical SAM domain protein [Bacillus cereus AH187]
gi|221239133|gb|ACM11843.1| radical SAM domain protein [Bacillus cereus Q1]
Length = 238
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P+L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFP-----------------QVNVS 159
G+ ID I +SPK Q+L V +
Sbjct: 109 QGSKWQDWLLEIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + + F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPEVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 228
>gi|163742266|ref|ZP_02149654.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10]
gi|161384596|gb|EDQ08977.1| organic-radical-activating protein [Phaeobacter gallaeciensis 2.10]
Length = 246
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 76/239 (31%), Gaps = 49/239 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 12 TTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDSLHA-VDSR 59
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ ++ +E + L+GG P +Q PLI + G+ A ET G
Sbjct: 60 YRDTWAPMATDEVWQEVTRLSGGQPLTVSLSGGNPAIQNFAPLIAQGKEAGYRFACETQG 119
Query: 121 --TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------NVSPENYIG 165
+ +D + +SPK Q+ + ++
Sbjct: 120 SISQPWFAALDTLVLSPKPPSSGHRVDWQKFDHCLAAAKGCDQIVLKIVIFDDCDYDWAR 179
Query: 166 FDFER-----FSLQPMDGPFLE-ENTNLAISYCFQNPKW-------------RLSVQTH 205
+R LQP + + +L + + W R+ Q H
Sbjct: 180 AVAKRLPDLPLYLQPGNPEVDPDKPVDLTAAT--ERLHWLIEKVTADRWFAPRVLPQLH 236
>gi|325978487|ref|YP_004288203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325178415|emb|CBZ48459.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 237
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 84/243 (34%), Gaps = 56/243 (23%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCD-----------YHCDWCDSAFTWDGSEK 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
R D++ + +++ Y L+GG P L L+ L RG +A+ET
Sbjct: 56 PKRMTADEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLV------------FPQVNVSPENYIG 165
G+ + ID + +SPK + L + P + + +
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSKLKKDQITFKIPVFDDADLAFAK 170
Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205
+R+ QP + L+ L +P+W R+ Q H
Sbjct: 171 MIQKRY--QPDVLYLSAGNPEPHANGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|261419199|ref|YP_003252881.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. Y412MC61]
gi|319766015|ref|YP_004131516.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. Y412MC52]
gi|261375656|gb|ACX78399.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. Y412MC61]
gi|317110881|gb|ADU93373.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. Y412MC52]
Length = 244
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+
Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCRWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
++ G + R+ ++GG PLL LI L+++G +AVET
Sbjct: 51 AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
G+ ID + +SPK L + ++ +
Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMDTDWSALDQIIERLQADQSRVRRISLKVVVF 166
>gi|85707174|ref|ZP_01038261.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217]
gi|85668333|gb|EAQ23207.1| hypothetical protein ROS217_16361 [Roseovarius sp. 217]
Length = 240
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 48/237 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ VF R GC+ +C +CD+ ++
Sbjct: 6 RVSEIFGPTIQGEGALIGQPTVFVRTGGCD-----------YRCSWCDSLHA-VESAYRE 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ E L+GG P +Q LI + +G+ A+ET G+
Sbjct: 54 TWVPMSAEAVMAEVVRLSGGRAIMVTLSGGNPAIQPLGALIDLGHAQGYRFAMETQGSVA 113
Query: 122 IEPPQGIDWICVSPKAGCD-------LKIKGGQELKLVFPQVNVSPENYIGFDFER---- 170
+ +D + +SPK L + K + + + + + + R
Sbjct: 114 RDWFAALDMLVLSPKPPSSSMVVDWALFEECVAAAKGAASVLKIVVFDEVDYQWARQVAG 173
Query: 171 ------FSLQP-MDGPFLEENTNLAISY--CFQNPKW-------------RLSVQTH 205
LQP P E+ + + +W ++ Q H
Sbjct: 174 RYPHLPLYLQPGNHTPPPPEDDAATVDQAGIDERMRWLVERVTGDGWFEAKVLPQLH 230
>gi|288905497|ref|YP_003430719.1| radical SAM domain protein [Streptococcus gallolyticus UCN34]
gi|288732223|emb|CBI13788.1| putative radical SAM domain protein [Streptococcus gallolyticus
UCN34]
Length = 237
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 85/243 (34%), Gaps = 56/243 (23%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCD-----------YHCDWCDSAFTWDGSEK 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
R VD++ + +++ Y L+GG P L L+ L RG +A+ET
Sbjct: 56 PKRMTVDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLV------------FPQVNVSPENYIG 165
G+ + ID + +SPK + L + P + + +
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSKLKKDQITFKIPVFDDADLTFAK 170
Query: 166 FDFERFSLQP-----------------MDGPFLEENTNLAISYCFQNPKW---RLSVQTH 205
+R+ QP + L+ L +P+W R+ Q H
Sbjct: 171 MIQKRY--QPDVLYLSAANPEPHANGNIVEHQLDRLRQLW-ETVAADPEWQSVRVLPQLH 227
Query: 206 KFI 208
+
Sbjct: 228 TLL 230
>gi|303229411|ref|ZP_07316201.1| radical SAM domain family protein [Veillonella atypica
ACS-134-V-Col7a]
gi|303230757|ref|ZP_07317504.1| radical SAM domain family protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302514517|gb|EFL56512.1| radical SAM domain family protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302515947|gb|EFL57899.1| radical SAM domain family protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 220
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 83/226 (36%), Gaps = 43/226 (19%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ E+F ++ GEG G + F R CN +C +CDT + +
Sbjct: 7 VIELFSSIDGEGKRQGFLTTFLRLHDCN-----------IRCSYCDTLYSYGPESTFESM 55
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRG--FEIAVETNGT 121
+V +AD+IE+ E +TGGEPLLQ + LI L +R ++ +ETNGT
Sbjct: 56 SVQAVADVIEQL------ENHRITVTGGEPLLQEPAIIELIDELTRRNARYDFNIETNGT 109
Query: 122 I--EPPQGIDWICVSPKAGCDLKIKGG-----------QELKLVFPQVNVSPENYIGFD- 167
I + W K L +K V +
Sbjct: 110 IIPSFHRDNVWFTYDYKTPSSLAEDAMNLDIFKVATPADIIKFVVGSMQDLDRMNEILKT 169
Query: 168 ---FERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + P+ G +E T + Y + R +Q HKFI
Sbjct: 170 YTTEAQIFVSPVWG-NIEGAT--IVDYMKAHDWQNVRFQLQIHKFI 212
>gi|83953730|ref|ZP_00962451.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1]
gi|83841675|gb|EAP80844.1| radical SAM domain protein [Sulfitobacter sp. NAS-14.1]
Length = 236
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 78/242 (32%), Gaps = 47/242 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I E+F T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCD-----------YRCAWCDSMHA-VDP 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ + E + L+GG P +Q PLIQ + G+ A ET
Sbjct: 49 AFRHDWASMSTDAVWNEVQRLSDNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108
Query: 120 GT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------------VNVSPENYI 164
G+ +D + +SPK + + + ++
Sbjct: 109 GSIAKPWFGQLDCLVLSPKPPSSGETVDWAAFDRCVAAGETAAQTVMKIVIFDDADYDWA 168
Query: 165 GFDFERF-----SLQP----------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHK 206
R+ LQP +D L + + + +W RL Q H
Sbjct: 169 RDAATRYPQLPLYLQPGNDEVDPSVAVDQQVLADKLLWLVDKTMAD-RWFTPRLLPQLHV 227
Query: 207 FI 208
+
Sbjct: 228 LL 229
>gi|119386888|ref|YP_917943.1| radical SAM domain-containing protein [Paracoccus denitrificans
PD1222]
gi|119377483|gb|ABL72247.1| preQ(0) biosynthesis protein QueE [Paracoccus denitrificans PD1222]
Length = 235
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 79/240 (32%), Gaps = 45/240 (18%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ ++ +
Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCVWCDSLHA-VESS 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + E + L+GG P +Q PLI ++G+ A ET G
Sbjct: 49 HRHEWRPMSAEAVWAEVRRLSGGQPLTVSLSGGNPAIQDFTPLIALGREQGYRFACETQG 108
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPEN 162
+ + + +SPK ++ +F QV++
Sbjct: 109 SVAQPWFAELSTLVLSPKPPSSGQVVDWDAFDRCLKAGEGAGQRVLKIVIFDQVDLDWAR 168
Query: 163 YIGFDFE--RFSLQPMDGPFLEE----NTNLAIS--YCFQN---PKW---RLSVQTHKFI 208
+ LQP + LA + +N W R+ Q H I
Sbjct: 169 EVAARHPGLPLYLQPGNPETDPALPVDPQALADRLLWLVENTVGRGWLKPRILPQLHVLI 228
>gi|206967568|ref|ZP_03228524.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus cereus AH1134]
gi|206736488|gb|EDZ53635.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus cereus AH1134]
Length = 238
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 81/240 (33%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ +E G + + ++GG P L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF-----------------PQVNVS 159
G+ ID + +SPK +L + +
Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFHKLDAIIQKLAGKDISLKVVVFDDHDFEYA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + + F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPKVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 228
>gi|51948763|gb|AAU14302.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDIM---GQVAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|51948739|gb|AAU14290.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948741|gb|AAU14291.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948743|gb|AAU14292.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948745|gb|AAU14293.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948747|gb|AAU14294.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948749|gb|AAU14295.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948751|gb|AAU14296.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948753|gb|AAU14297.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948755|gb|AAU14298.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948757|gb|AAU14299.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948759|gb|AAU14300.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948761|gb|AAU14301.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948769|gb|AAU14305.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948773|gb|AAU14307.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948775|gb|AAU14308.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948791|gb|AAU14316.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948831|gb|AAU14336.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948833|gb|AAU14337.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948839|gb|AAU14340.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948845|gb|AAU14343.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948847|gb|AAU14344.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948851|gb|AAU14346.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948853|gb|AAU14347.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948855|gb|AAU14348.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948871|gb|AAU14356.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948875|gb|AAU14358.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948883|gb|AAU14362.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
+ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TIQTLDDIM---GQVAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|51948881|gb|AAU14361.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
V L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TVQTLDDIM---GQVAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|254476144|ref|ZP_05089530.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ruegeria sp. R11]
gi|214030387|gb|EEB71222.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ruegeria sp. R11]
Length = 235
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 71/239 (29%), Gaps = 49/239 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MSLRIAEIFGPTIQGEGALIGEPTVFVRTGGCD-----------YRCSWCDSLHA-VDSK 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ D+ E + L+GG P +Q LI + G+ A ET G
Sbjct: 49 FRDTWMPMTTRDVWAEVTHLSGGQPLTVSLSGGNPAIQDFAELIAMGKEAGYRFACETQG 108
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKL------------------VFPQVNVSPEN 162
+I + LK VF +V+
Sbjct: 109 SINQAWFSKLDTLVLSPKPPSSGHKVDWLKFGSCLAAAKDCPNVVLKIVVFDEVDYDWAR 168
Query: 163 YIGFDFER--FSLQPMDGPFLEE-NTNLAISYCFQNPKW-------------RLSVQTH 205
+ + LQP + E +L + +W R+ Q H
Sbjct: 169 VVADRYPELPLYLQPGNPTVDPETPVDLTETT--ARLRWLIDKVTADKWFAPRVLPQLH 225
>gi|75759343|ref|ZP_00739440.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218896375|ref|YP_002444786.1| radical SAM domain protein [Bacillus cereus G9842]
gi|74493175|gb|EAO56294.1| Queuosine biosynthesis protein QueE [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218542694|gb|ACK95088.1| radical SAM domain protein [Bacillus cereus G9842]
Length = 238
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ +E G ++ + ++GG P L ++ + L + G A+ET
Sbjct: 49 SAKNQIRQMTAEDIWDELVAIGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF-----------------PQVNVS 159
G+ ID + +SPK Q+L + +
Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFQKLDAIIQKLAGKDISLKVVVFDDHDFEYA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + + F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPDVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 228
>gi|317129081|ref|YP_004095363.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus cellulosilyticus DSM 2522]
gi|315474029|gb|ADU30632.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus cellulosilyticus DSM 2522]
Length = 242
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 37/223 (16%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + + EIF T+QGEG GR +F R +GC+ C +CD+ F G
Sbjct: 1 MYKFPVLEIFGPTIQGEGMVVGRKTMFVRTAGCD-----------YSCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ +++ G K Y ++GG P L LI L+ ++A+ET
Sbjct: 49 SSKEDIKQLTADEILCRLKKDGGKSFDYVTISGGNPALFSHLDELINLLHSENVKVALET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDL---KIKGGQE---------------LKLVF---PQ 155
G+ ID + +SPK K E LK+V
Sbjct: 109 QGSRWQEWFLKIDDLTLSPKPPSSQMITNWKILDEIIGHLSSNNRLQYTSLKIVIFTNED 168
Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ + + + F LQ + E+N + + KW
Sbjct: 169 LTYAKKIHERFPHIPLYLQVGNEDLDEDNEERLMKKLLEKYKW 211
>gi|51948767|gb|AAU14304.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948815|gb|AAU14328.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948877|gb|AAU14359.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948903|gb|AAU14372.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
gi|51948907|gb|AAU14374.1| putative radical SAM domain-like protein [Pseudomonas viridiflava]
Length = 129
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 22/134 (16%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFTGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVET 118
++ L D++ RY +TGGEPL Q + +PL++ L G+E+++ET
Sbjct: 50 ------TINTLDDIM---GQVAAYRPRYVCVTGGEPLAQPNAIPLLKRLCDEGYEVSLET 100
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 101 SGALDISAVDPRVS 114
>gi|56419512|ref|YP_146830.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426]
gi|56379354|dbj|BAD75262.1| coenzyme PQQ synthesis [Geobacillus kaustophilus HTA426]
Length = 244
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+
Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCRWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETN 119
++ G + R+ ++GG PLL LI L+++G +AVET
Sbjct: 51 AKDEIEQLTADEIWRRLEAIGGRRFRHVTISGGNPLLIAALGELIALLHEKGMRVAVETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
G+ ID + +SPK L + ++ +
Sbjct: 111 GSRWQDWLLDIDDVTLSPKPPSSGMDTDWAALDQIIERLQADQSRVRRISLKVVVF 166
>gi|306833726|ref|ZP_07466852.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
bovis ATCC 700338]
gi|304424063|gb|EFM27203.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
bovis ATCC 700338]
Length = 237
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 82/241 (34%), Gaps = 52/241 (21%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 7 TLPILEIFGPTFQGEGRAIGQKTMFVRTGGCD-----------YHCDWCDSAFTWDGSEK 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
R D++ + +++ Y L+GG P L L+ L RG +A+ET
Sbjct: 56 PKRMTTDEVIEQLDQLGTYD-----YVTLSGGNPCLLANNMAELVAKLKARGVTLAIETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY-------------- 163
G+ + ID + +SPK + L + Q+ +
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLKKDQITFKVPVFDDADLVFAK 170
Query: 164 ---IGFDFERFSLQ---P-------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHKF 207
+ + L P + LE L +P+W R+ Q H
Sbjct: 171 MIQKRYQPDVLYLSAGNPEPHANGNIVEHQLERLRQLW-ETVATDPEWQSVRVLPQLHTL 229
Query: 208 I 208
+
Sbjct: 230 L 230
>gi|167461680|ref|ZP_02326769.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 245
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 78/226 (34%), Gaps = 40/226 (17%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ +C +CD+ F G
Sbjct: 1 MTNIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCSWCDSSFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + + D++EE G K + ++GG P LL L+ L +G A+ET
Sbjct: 49 SGKDQIRMLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAG---------------------CDLKIKGGQELKLVFPQ 155
G+ +D + +SPK LK+V
Sbjct: 109 QGSKWQDWLLAVDDVTLSPKPPSSGMTTDWGMLDKIAEKLRGRMQSHPMQRVSLKVVVFD 168
Query: 156 V---NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ + + LQ + + + +W
Sbjct: 169 DIDFQYAKRVHQRYPLVPMYLQVGNPDIYTADNAKLLEQLLDRYEW 214
>gi|222082946|ref|YP_002542311.1| organic-radical-activating protein [Agrobacterium radiobacter K84]
gi|221727625|gb|ACM30714.1| organic-radical-activating protein [Agrobacterium radiobacter K84]
Length = 279
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CDT +
Sbjct: 44 RVSEIFGPTIQGEGILIGLPTVFVRTGGCD-----------YRCSWCDTLHA-VDSDYRD 91
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
++ + ++ ++ + L+GG P +Q PLI + G+ A+ET G+
Sbjct: 92 QWQPMSVDEIWQDVIRLSGGKPLAVSLSGGNPAIQPLGPLIARGHGEGYSFALETQGSVA 151
Query: 122 IEPPQGIDWICVSPKAG 138
+ +D + +SPK
Sbjct: 152 KDWFADLDTLVLSPKPP 168
>gi|157692046|ref|YP_001486508.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032]
gi|157680804|gb|ABV61948.1| queuosine biosynthesis protein [Bacillus pumilus SAFR-032]
Length = 243
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 90/246 (36%), Gaps = 51/246 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
K + EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 3 KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
D+++E G + + ++GG P LL+ LI L+++G + A+ET
Sbjct: 51 AKHDIQWLHAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEKGIDTALETQ 110
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------------------- 157
G + ID + +SPK +L + ++
Sbjct: 111 GTMYQDWFLKIDDLTISPKPPSSNMKTDFAKLTRIIDELKNGNRLEHASLKVVIFDDHDL 170
Query: 158 -VSPENYIGFDFERFSLQPMDGP-----------FLEENTNLAISYCFQNP---KWRLSV 202
+ + + + F LQ + L + + Q+P + R+
Sbjct: 171 AYAKDVHAKYPELPFYLQVGNDDTTTGDDASLLTHLLKKYEALVDQVAQDPDLNRVRVLP 230
Query: 203 QTHKFI 208
Q H +
Sbjct: 231 QLHTLL 236
>gi|242372943|ref|ZP_04818517.1| organic radical-activating protein [Staphylococcus epidermidis
M23864:W1]
gi|242349427|gb|EES41028.1| organic radical-activating protein [Staphylococcus epidermidis
M23864:W1]
Length = 237
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 34/207 (16%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E+F T+QGEG GR +F R +GC+ +C +CD+ F G
Sbjct: 1 MAKIPVLEVFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ EE G + ++GG P L++ L+ ++ A+ET
Sbjct: 49 SAKEDIRLLSAEEIYEELREVGGDNFNHVTISGGNPALIKGIQDLVDLFEEKNIYTALET 108
Query: 119 NG--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------VNVSPENYIGFDFE 169
G I+ + +SPK L V Q + V N ++F
Sbjct: 109 QGSKFQPWMTQINDLTISPKPPSSTMKPNLDILDSVIEQCVHHTLNLKVVIFNEEDYEFA 168
Query: 170 R----------FSLQPMDGPFLEENTN 186
+ F LQ + P+LE++
Sbjct: 169 KMIHHRYPSIPFYLQ-VGNPYLEDDVE 194
>gi|259419192|ref|ZP_05743109.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Silicibacter sp. TrichCH4B]
gi|259345414|gb|EEW57268.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Silicibacter sp. TrichCH4B]
Length = 235
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 72/241 (29%), Gaps = 47/241 (19%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDSLHA-VESQ 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + + + L+GG P +Q PLI G+ A ET G
Sbjct: 49 YRHSWAPMDTDAVWAKVHKLSGGQPLTVSLSGGNPAIQDFGPLITKGRAAGYRFACETQG 108
Query: 121 --TIEPPQGIDWICVSPKAGCDLKIKGGQELK-----------LVFPQVNVSPENYIGFD 167
+D + +SPK + V V +Y
Sbjct: 109 SIPRPWFADLDTLVLSPKPPSSGENVDWDAFDRCRAIGAGARQQVMKIVIFDETDYQWAR 168
Query: 168 FER-------FSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP P ++ T + + W R+ Q H
Sbjct: 169 EVHRHHSDLALYLQPG-NPEVDPATPVDLQTLANRLGWLTEKAMADGWFAPRILPQLHVL 227
Query: 208 I 208
I
Sbjct: 228 I 228
>gi|222150713|ref|YP_002559866.1| hypothetical protein MCCL_0463 [Macrococcus caseolyticus JCSC5402]
gi|222119835|dbj|BAH17170.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 236
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 18/190 (9%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ EIF T+QGEG GR +F R +GC+ C +CD+ F GT
Sbjct: 1 MKIPVLEIFGPTIQGEGAVIGRKTMFVRTAGCDFS-----------CAWCDSKFTW-DGT 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
+ + E + + ++GG P L++ + L +G E+A+ET
Sbjct: 49 MKDEIEMLLPETIYERLQSIAPNQFNHVTISGGNPALIKNLAGFVSLLQDKGIEVALETQ 108
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP--ENYIGFDFERFSLQP 175
G ID + +SPK +L V +++ + F+ E +
Sbjct: 109 GTKFQSWMTEIDQLTISPKPPSSTMTHDLDQLDAVLHELDSDKVTLKVVIFNDEDYHFSK 168
Query: 176 MDGPFLEENT 185
M T
Sbjct: 169 MIHKRYPHIT 178
>gi|70727187|ref|YP_254103.1| hypothetical protein SH2188 [Staphylococcus haemolyticus JCSC1435]
gi|68447913|dbj|BAE05497.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 238
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 33/191 (17%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG GR +F R +GC+ +C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DGSAKE 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
+ ++ + G + ++GG P L++ L+ ++ A+ET G
Sbjct: 54 DIKLMTAEEIYNQLKKIGGDRFDHVTISGGNPALIKGIQDLVDLFEEKQIYTALETQGSK 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ------------VNVSPENYIGFDF 168
+ I+ + +SPK L V Q + +
Sbjct: 114 FQPWMRQINDLTISPKPPSSNMKPNIDILDSVIEQCIESTLNLKVVIFDDDDYEFAKMIH 173
Query: 169 ER-----FSLQ 174
R F LQ
Sbjct: 174 HRYPNIPFYLQ 184
>gi|94266661|ref|ZP_01290338.1| Radical SAM [delta proteobacterium MLMS-1]
gi|93452708|gb|EAT03259.1| Radical SAM [delta proteobacterium MLMS-1]
Length = 224
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 41/226 (18%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF ++QGE AG +F R +GCNL +C +CD + + G Y
Sbjct: 9 LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
+++ + + E G + +TGGEPLLQ V PL+ L RG ++ +ETNGT
Sbjct: 56 SLEGVLKAMAEVGP-GGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGTRSL 114
Query: 124 ------PPQGIDWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFDFER- 170
+D C + L + E+K V + + ++
Sbjct: 115 ARLPAAVRCIMDIKCPASGMAAHLMPENLHRLTGDDEIKFVIS--DRADYDWAKALLNHH 172
Query: 171 --------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
S P+ + + RL +Q H +
Sbjct: 173 QLTGLGPTLSFSPVTDRLAAADLAAWLLADALPA--RLQLQLHTLL 216
>gi|322373082|ref|ZP_08047618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus sp. C150]
gi|321278124|gb|EFX55193.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus sp. C150]
Length = 238
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 82/242 (33%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ ++ Y L+GG P L L+ L RG +AVET
Sbjct: 57 PTRMTADEVIAALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV------------NVSPENYIG 165
G+ + ID I +SPK + L + Q+ + + ++
Sbjct: 112 GSRWQEWLRDIDQITLSPKPPSSKMEVNLETLDFIVSQLDPDKVTFKVPVFDDADLDFAK 171
Query: 166 FDFERFSLQP-----MDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
ER+ QP G + + Y + R+ Q H
Sbjct: 172 MIQERY--QPDVMFLSAGNPEPKAEGNIVQYQLERLKELWETVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|159900637|ref|YP_001546884.1| radical SAM domain-containing protein [Herpetosiphon aurantiacus
ATCC 23779]
gi|159893676|gb|ABX06756.1| Radical SAM domain protein [Herpetosiphon aurantiacus ATCC 23779]
Length = 230
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 92/239 (38%), Gaps = 54/239 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--QGTKGG 63
+ E++ ++QGEG G F RF CNL +C +CDT + +G K
Sbjct: 3 VMEVYRSVQGEGTLMGVPTTFVRFFACNL-----------RCSWCDTKYSWSVKEGGKWE 51
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
+ LA I +Q R+ VLTGGEP+LQ ++P L Q L G + VETN T+
Sbjct: 52 DLPIATLAQRIADQ------GARHVVLTGGEPMLQRELPALAQTLRAAGHHLTVETNSTL 105
Query: 123 EPPQGIDWI---CVSPK----------------------AGCDLKIKGGQELKLVFPQVN 157
P+ ++ I +SPK K E L
Sbjct: 106 FRPELVELINLWSLSPKLAGANTGMLRLEPLRQFMQLPAEQQQWKFVITGESDLAQLHQF 165
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN---PKW-----RLSVQTHKFI 208
VS QP +G + E + A+ + + P+W R+ Q H I
Sbjct: 166 VSEHQAFAEAQLPIIWQP-EGRWAERDYAHALEWLAERAQLPEWRPFNVRVLPQMHVLI 223
>gi|301052981|ref|YP_003791192.1| radical SAM domain-containing protein [Bacillus anthracis CI]
gi|300375150|gb|ADK04054.1| radical SAM domain protein [Bacillus cereus biovar anthracis str.
CI]
Length = 238
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 86/240 (35%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P LL+ L+ L + G A+ET
Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPVLLKNIGFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER- 170
G+ ID I +SPK Q+L V ++ + + +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYA 168
Query: 171 -----------FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPDVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 228
>gi|30019493|ref|NP_831124.1| organic radical activating protein [Bacillus cereus ATCC 14579]
gi|29895037|gb|AAP08325.1| Organic radical activating enzyme [Bacillus cereus ATCC 14579]
Length = 238
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ +E G + + ++GG P L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF-----------------PQVNVS 159
G+ ID I +SPK Q L + +
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDHDFEYA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + + F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPKVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 228
>gi|149194883|ref|ZP_01871977.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2]
gi|149135042|gb|EDM23524.1| hypothetical protein CMTB2_08312 [Caminibacter mediatlanticus TB-2]
Length = 232
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 34/219 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
L I EIF ++QGEG ++G ++F R GCNL + CD+ + + +
Sbjct: 4 NLLPISEIFYSIQGEGKYSGTPSIFVRVGGCNLTC------PGFGNKGCDSYYA-VDKSY 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG- 120
+ + ++ +E + + V+TGGEP L + G EI +ETN
Sbjct: 57 KNEWENLSIEEIKKEFSKYLKFN-PHLVITGGEPTLYYEKLYPLIEWFSG-EITIETNAT 114
Query: 121 ---TIEPPQGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER---- 170
E + + + + K K + + +++ F +R
Sbjct: 115 IFIDFEKCPKYKDVTFAMSVKLSNSGEEYKKRVNKKAILNISKNAKKSFFKFVIDRDLKE 174
Query: 171 ------------FSLQP--MDGPFLEENTNLAISYCFQN 195
P + LE+N +C +N
Sbjct: 175 EIEDITEGINLEIYCMPLGANREELEKNAPFVFDFCLKN 213
>gi|77919241|ref|YP_357056.1| organic radical activating protein [Pelobacter carbinolicus DSM
2380]
gi|77545324|gb|ABA88886.1| organic radical activating enzyme [Pelobacter carbinolicus DSM
2380]
Length = 253
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/249 (22%), Positives = 82/249 (32%), Gaps = 59/249 (23%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN- 66
EIF ++QGEGG G VF R +GCNL C +CDTDF +
Sbjct: 15 EIFSSIQGEGGLVGCRQVFIRLAGCNLD-----------CAYCDTDFAPQDTCRIEDAPG 63
Query: 67 -----------VDQLADLIEEQWITGEKEGRY-CVLTGGEPLL--QVDVPLIQALNKRGF 112
++ I W + LTGGEPLL Q+ + L +
Sbjct: 64 SGQFRSVTNPVALEVVADILGAWTKRAPGMHHSISLTGGEPLLQGQLLRDWVPVLKEI-L 122
Query: 113 EIAVETNGTIEPP-----QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
I +ETNGT ++W+ + K + +L F ++ ++
Sbjct: 123 PIHLETNGTCPDALAPLLPHLEWVSMDVKLASTTGMPTPWKLHRAFLEIAAQAHVWVKAV 182
Query: 168 FER----------------------FSLQPMDGP-----FLEENTNLAISYCFQNPKWRL 200
LQP E L + + K R+
Sbjct: 183 VCESTPAEEMHDLGRLVHQIAPHVTIFLQPATRQGKVDMSAERLLALQTALSRHHGKVRV 242
Query: 201 SVQTHKFIG 209
QTH F+G
Sbjct: 243 VPQTHVFLG 251
>gi|288931807|ref|YP_003435867.1| radical SAM protein [Ferroglobus placidus DSM 10642]
gi|288894055|gb|ADC65592.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
Length = 224
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 47/241 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK I EIF ++QGEG G +F RF GCNL C +CDT +
Sbjct: 1 MKA-KISEIFYSIQGEGIFCGVRQLFIRFYGCNLN-----------CYYCDTTY-NEDCV 47
Query: 61 KGGRYNVDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
V + ++ ++ I + TGGEPLL D A K+ + +E+
Sbjct: 48 NYAYNEVRKNPVELDYVQRIIDESERIHSVSFTGGEPLLYAD---FIASLKKTKKFYLES 104
Query: 119 NGTIEPPQG--IDWICVSPKAGCDLKIKGGQEL---------------------KLVFP- 154
N T+ + V+ ++ E+ K+V P
Sbjct: 105 NMTLPEKAKKVRFFDVVAGDLKVREAVENYDEVFERTVKCYKILRDTRKRVTFCKIVLPP 164
Query: 155 ----QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+ ++ I F LQP+ G F E L + R+ Q HK++G+
Sbjct: 165 KFNFEEVLNSAMEIKDYVRCFVLQPVFGTFGENILKLQ-EAILEFSDARIIPQVHKYLGV 223
Query: 211 R 211
R
Sbjct: 224 R 224
>gi|312136463|ref|YP_004003800.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
gi|311224182|gb|ADP77038.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
Length = 232
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/249 (21%), Positives = 85/249 (34%), Gaps = 55/249 (22%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK + EIF ++QGEG G+ +F RF+GCNL C +CDT
Sbjct: 1 MKA-PVYEIFSSIQGEGLLVGKRQIFVRFAGCNLD-----------CIYCDTP-KSRDPK 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G ++VD+L ++ LTGGEPLL D F +ETNG
Sbjct: 48 NGKLFSVDELYKSVKSLVTPDLHS---ICLTGGEPLLYADFIKKFLKKCE-FNALLETNG 103
Query: 121 TIEPPQG-----IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------ 169
++ ID+ V K + + G + ++ +N+ + +
Sbjct: 104 SLPDNAKVISKFIDYAAVDIKLPRYITVMGEEIIEKEIETINILMAKKVYTYCKIVVLPS 163
Query: 170 -----------------------RFSLQPMD----GPFLEENTNLAISYCFQNPKWRLSV 202
+ LQP ++ ++ R+
Sbjct: 164 TKVKSLKKVVKKIRDGIVNPLGLQIVLQPSSPLKNWIGKQKRLLKMSEIIGKDFNVRIIP 223
Query: 203 QTHKFIGIR 211
Q HK + R
Sbjct: 224 QIHKILKFR 232
>gi|239826407|ref|YP_002949031.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. WCH70]
gi|239806700|gb|ACS23765.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. WCH70]
Length = 245
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/246 (21%), Positives = 84/246 (34%), Gaps = 51/246 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
K + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+
Sbjct: 5 KKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCRWCDSAFTW-DGS 52
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
+ E + G + ++GG P L+Q L+ L +G IAVET
Sbjct: 53 AKEEIRQMTAEQIWERLYELGGDRFSHVTISGGNPVLIQALEELVVLLKNKGIRIAVETQ 112
Query: 120 GTIEPPQGIDW--ICVSPKAGCDLKIKGGQELKLV-----------FPQVNVSPENYIGF 166
G+ I +SPK L + + V + I F
Sbjct: 113 GSRWQDWLYHIDDITISPKPPSSGMDTDFAMLDHIVGKLAGAGRASHMSLKVVVFDEIDF 172
Query: 167 DFER----------FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSV 202
D+ + F LQ + E + + +W R+
Sbjct: 173 DYAKKVHRRYPDIPFYLQVGNADLAEADDAALRTQLLARLEWLVEKVAQSNELNDVRVLP 232
Query: 203 QTHKFI 208
Q H +
Sbjct: 233 QLHTLL 238
>gi|297568917|ref|YP_003690261.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296924832|gb|ADH85642.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
Length = 241
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/220 (23%), Positives = 75/220 (34%), Gaps = 40/220 (18%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF +LQGE HAG +F R +GCNL +C +CD + + G
Sbjct: 31 VAEIFYSLQGESSHAGYPCIFVRLAGCNL-----------RCVYCDARYTYEEA--GTCR 77
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI-- 122
+ ++ I E +TGGEPLLQ +V L+ AL ++ +ETNGTI
Sbjct: 78 TIAEVMAAIAEL-----PPVSRVEITGGEPLLQEEVYSLLNALLADQRQVLLETNGTISL 132
Query: 123 ---EPPQGIDWICVSPKAGCDLKIKG--------GQELKLVFPQVNVSPE------NYIG 165
P +G + E+K V Y
Sbjct: 133 ARVPAAVHCIMDVKCPGSGMAEHLDRENFRRLTDRDEIKFVLSDRRDYDWARKIINEYQL 192
Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
D P+ + RL +Q H
Sbjct: 193 ADHPHLIFSPVTNRLQPSELAAWLLADALPA--RLQLQLH 230
>gi|47566230|ref|ZP_00237258.1| Organic radical activating enzyme [Bacillus cereus G9241]
gi|47556783|gb|EAL15114.1| Organic radical activating enzyme [Bacillus cereus G9241]
Length = 238
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER- 170
G+ ID I +SPK Q+L + +++ + + +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEYA 168
Query: 171 -----------FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPDVPFFLQVGNDDTKTVDDTMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 228
>gi|194014564|ref|ZP_03053181.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus pumilus ATCC 7061]
gi|194013590|gb|EDW23155.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus pumilus ATCC 7061]
Length = 243
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 51/246 (20%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
K + EIF T+QGEG G+ +F R +GC+ C +CD+ F
Sbjct: 3 KAIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTWNGSA 51
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
K + D+++E G + + ++GG P LL+ LI L++ G + A+ET
Sbjct: 52 KHDIQWL-HAEDIVKELKRIGGQAFSHVTISGGNPALLKQMESLIDLLHEEGIDTALETQ 110
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------------------- 157
G + ID + +SPK +L + ++
Sbjct: 111 GTMYQDWFLKIDDLTISPKPPSSNMKTDFTKLTRIIDELKNGNRLQHASLKVVIFDDHDL 170
Query: 158 -VSPENYIGFDFERFSLQPMDGP-----------FLEENTNLAISYCFQNP---KWRLSV 202
+ + + + F LQ + L + + Q+P + R+
Sbjct: 171 AYAKDVHAKYPELPFYLQVGNDDTTTGDDAYLLTHLLKKYEALVDQVAQDPDLNRVRVLP 230
Query: 203 QTHKFI 208
Q H +
Sbjct: 231 QLHTLL 236
>gi|254512582|ref|ZP_05124648.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhodobacteraceae bacterium KLH11]
gi|221532581|gb|EEE35576.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Rhodobacteraceae bacterium KLH11]
Length = 233
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 73/235 (31%), Gaps = 43/235 (18%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G+ VF R GC+ +C +CD+ + T
Sbjct: 1 MTLRIAEIFGPTVQGEGALIGQPTVFVRTGGCDF-----------RCSWCDSLHA-VDST 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ D+ E L+GG P +Q PLI G+ A ET G
Sbjct: 49 FRQSWKTMSTRDVWTEIQRLSGGRPLTVSLSGGNPAIQDFGPLIGYGLDAGYAFACETQG 108
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQELK---------LVFPQVNVSPENYIGFDFE 169
+ + + +SPK + V V ++ +
Sbjct: 109 SIAKPWFADLAMLVLSPKPPSSGEAMDWAAFDACLDFRPDNTVLKIVIFDDADFQWAEGV 168
Query: 170 R-------FSLQ---PMDGPFLEENTNLA---ISYCFQN---PKW---RLSVQTH 205
LQ P P + N A + + W R+ Q H
Sbjct: 169 ARRYPDLPLYLQPGNPETDPDSPVDLNQATGRLEWLIDKTLSIGWFTPRILPQLH 223
>gi|306824721|ref|ZP_07458065.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
sp. oral taxon 071 str. 73H25AP]
gi|304432932|gb|EFM35904.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
sp. oral taxon 071 str. 73H25AP]
Length = 238
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 80/242 (33%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAELDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + + L G + T + R+ Q H
Sbjct: 172 DIQERYQPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWERVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|291443188|ref|ZP_06582578.1| radical SAM domain-containing protein [Streptomyces roseosporus
NRRL 15998]
gi|291346135|gb|EFE73039.1| radical SAM domain-containing protein [Streptomyces roseosporus
NRRL 15998]
Length = 241
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 83/237 (35%), Gaps = 53/237 (22%)
Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGG 63
+ EIF T+QGEG AGR VF R GCNL C +CDT + +GT
Sbjct: 11 VNEIFGPTVQGEGPSAGRQCVFLRLGGCNLS-----------CHWCDTPYTWDWKGTSDE 59
Query: 64 RYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFE 113
+ D +++EE G V++GGEPL + P+++ L + G
Sbjct: 60 KTAFDPRKELHNRDAGEVVEELLALG---TGLVVISGGEPLSQQRRLRPVLKGLLEAGVT 116
Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS- 172
+ ETNGT+ P I V L G K + P F+
Sbjct: 117 VEFETNGTVVPDDEIITPGVRFNVSPKLAHAGDPASKRIVPAALTKLAQTTDVAFKFVCR 176
Query: 173 ----------------LQPMDGPFLEENTN--------LAISYCFQNPKWRLSVQTH 205
+ P+ +N LA + W LS + H
Sbjct: 177 TTDDLDEVGTLQADFGISPIWIMPEGKNVAHISQHLSSLADEVVRR--GWNLSTRLH 231
>gi|239939759|ref|ZP_04691696.1| radical SAM family protein [Streptomyces roseosporus NRRL 15998]
gi|239986242|ref|ZP_04706906.1| radical SAM family protein [Streptomyces roseosporus NRRL 11379]
Length = 235
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 83/237 (35%), Gaps = 53/237 (22%)
Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGG 63
+ EIF T+QGEG AGR VF R GCNL C +CDT + +GT
Sbjct: 5 VNEIFGPTVQGEGPSAGRQCVFLRLGGCNLS-----------CHWCDTPYTWDWKGTSDE 53
Query: 64 RYNVD--------QLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFE 113
+ D +++EE G V++GGEPL + P+++ L + G
Sbjct: 54 KTAFDPRKELHNRDAGEVVEELLALG---TGLVVISGGEPLSQQRRLRPVLKGLLEAGVT 110
Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS- 172
+ ETNGT+ P I V L G K + P F+
Sbjct: 111 VEFETNGTVVPDDEIITPGVRFNVSPKLAHAGDPASKRIVPAALTKLAQTTDVAFKFVCR 170
Query: 173 ----------------LQPMDGPFLEENTN--------LAISYCFQNPKWRLSVQTH 205
+ P+ +N LA + W LS + H
Sbjct: 171 TTDDLDEVGTLQADFGISPIWIMPEGKNVAHISQHLSSLADEVVRR--GWNLSTRLH 225
>gi|83942510|ref|ZP_00954971.1| radical SAM domain protein [Sulfitobacter sp. EE-36]
gi|83846603|gb|EAP84479.1| radical SAM domain protein [Sulfitobacter sp. EE-36]
Length = 236
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 78/242 (32%), Gaps = 47/242 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I E+F T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MSQLRIAEVFGPTIQGEGALIGEPTVFVRTGGCD-----------YRCAWCDSMHA-VDP 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ + +E + L+GG P +Q PLIQ + G+ A ET
Sbjct: 49 AFRHDWANMSTDAVWQEVQRLSDNTPLTVSLSGGNPAIQDFAPLIQLGHAAGYRFACETQ 108
Query: 120 GT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------------VNVSPENYI 164
G+ +D + +SPK + + + ++
Sbjct: 109 GSIAKPWFGQLDCLVLSPKPPSSGETVDWAAFDRCVAAGETAAQTVMKIVIFDDADYDWA 168
Query: 165 GFDFERF-----SLQP----------MDGPFLEENTNLAISYCFQNPKW---RLSVQTHK 206
R+ LQP +D L + + +W RL Q H
Sbjct: 169 RVAATRYPQLPLYLQPGNDEVDPSVAVDPQVLAGKLLWLVDKTMAD-RWFTPRLLPQLHV 227
Query: 207 FI 208
+
Sbjct: 228 LL 229
>gi|320546946|ref|ZP_08041247.1| ExsD protein [Streptococcus equinus ATCC 9812]
gi|320448348|gb|EFW89090.1| ExsD protein [Streptococcus equinus ATCC 9812]
Length = 237
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 79/240 (32%), Gaps = 50/240 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R GC+ C +CD+DF K
Sbjct: 7 TIPVLEIFGPTFQGEGRAIGQKTMFVRTGGCD-----------YHCAWCDSDFTWNGSEK 55
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
R D++ ++ Y L+GG P L L+ L RG + +ET
Sbjct: 56 PNRMTADEIIAELDRLGTYD-----YVTLSGGNPCLLGASMGELVTKLKARGVTLGIETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI------------- 164
G+ + ID + +SPK + L + Q+ +
Sbjct: 111 GSRWQTWLKDIDQVTLSPKPPSSKMTVNFETLDFIVSQLEKDQHTFKIPVFDDDDLAFAK 170
Query: 165 ----GFDFERFSLQ-----PMDGPFLEEN----TNLAISYCFQNPKW---RLSVQTHKFI 208
+ + L P + E + +P+W R+ Q H +
Sbjct: 171 MIQNRYQPDVLYLSAGNPEPHAAGNIVEAQLNRLRMLWETVAADPEWQSVRVLPQLHTLL 230
>gi|315658944|ref|ZP_07911811.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
lugdunensis M23590]
gi|315496068|gb|EFU84396.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
lugdunensis M23590]
Length = 238
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG GR +F R +GC+ +C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DGSAKD 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
+ + ++ E+ G + ++GG P L++ L+ A+ET G
Sbjct: 54 QIQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGSK 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
I+ + +SPK + L V Q
Sbjct: 114 FQPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQ 148
>gi|224372460|ref|YP_002606832.1| radical SAM domain protein [Nautilia profundicola AmH]
gi|223589672|gb|ACM93408.1| radical SAM domain protein [Nautilia profundicola AmH]
Length = 233
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 38/221 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG-- 59
KL + EIF ++QGEG +AG +VF R GCNL ++ CD+ + +
Sbjct: 5 KLIPVSEIFYSIQGEGKYAGHPSVFVRVGGCNLKCPGFGEKG------CDSYYAVDKSYK 58
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++ +V+++ + + + + V+TGGEP L + G +I VETN
Sbjct: 59 SEWKLMSVEEIKSEVSKYIR----KDTHLVITGGEPTLFYKQLYPLVVWFEG-QITVETN 113
Query: 120 GTIEPPQGID------WICVSPKAGCDLKIKGGQELKLVFP-QVNVSPENYIGFDFER-- 170
T++ +S K + G + K V V +P+++ F ++
Sbjct: 114 TTVDIDFEKYPAYKDVAFAMSVKLSNSAEEYGKRVKKHVIKSYVKNAPKSFFKFVIDKDL 173
Query: 171 --------------FSLQP--MDGPFLEENTNLAISYCFQN 195
P D LE+N +C ++
Sbjct: 174 NNEIKDITAGINAPVYCMPLGADKEELEKNAPFVFGFCLKH 214
>gi|157165265|ref|YP_001466044.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
[Campylobacter concisus 13826]
gi|112801208|gb|EAT98552.1| radical SAM domain protein [Campylobacter concisus 13826]
Length = 251
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 59/213 (27%), Positives = 85/213 (39%), Gaps = 20/213 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDTDFVG 56
K + E FL++QGEG + GR+AVF RF GCNL + + CD+
Sbjct: 3 KELELVEAFLSIQGEGAYQGRLAVFLRFLGCNLNCSGFGVKTRSLKTGEELLGCDSIRAV 62
Query: 57 IQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR---GF 112
+G RY+ D++ L++ E + VLTGGEPL+ L + +
Sbjct: 63 FKGHFHHKRYSTDEILSLVDGLCKGLE-QKPIIVLTGGEPLIWHQNENFINLVRNLLINY 121
Query: 113 EIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
E+ ETNGTI I G L G E K + ++ ++ F +
Sbjct: 122 EVHFETNGTILVDFDKFEIYKNCHFALGVKLANSGVSEQKRINLDAILAIKDNAKSSFLK 181
Query: 171 FSLQPMDGPFLEENTNLAISYCFQN---PKWRL 200
F L D LEE Y P W +
Sbjct: 182 FVLSHFDKSELEEIL-----YIKNRVNLPVWCM 209
>gi|218233066|ref|YP_002366125.1| radical SAM domain protein [Bacillus cereus B4264]
gi|218161023|gb|ACK61015.1| radical SAM domain protein [Bacillus cereus B4264]
Length = 238
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMIVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ +E G + + ++GG P L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTPEDIWDELVAIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVF-----------------PQVNVS 159
G+ ID I +SPK Q L + +
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDHDFEYA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + + F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPKVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 228
>gi|87311106|ref|ZP_01093230.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM
3645]
gi|87286197|gb|EAQ78107.1| hypothetical protein DSM3645_18841 [Blastopirellula marina DSM
3645]
Length = 228
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EI+ ++QGEG G + F R SGCNL +C FCDT + G
Sbjct: 2 RIAEIYRSIQGEGALTGVTSTFVRASGCNL-----------RCWFCDTPHASWKPE-GED 49
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
+V ++ I + + VLTGGEP+L +PL + ++ G I +ET GT+
Sbjct: 50 LSVAEILGRIALL------DCDHVVLTGGEPMLFAEMIPLCEGIHVAGRHITIETAGTLY 103
Query: 124 PPQGIDWICVSPKAGC-------DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
P D + +SPK + + E P+V + + F+ +P
Sbjct: 104 LPLTCDVMSISPKMSNSAPPLDDHPRWRRRHEQTRKAPEVIRQLIDEHAYQFKFVIDRPA 163
Query: 177 DGPFLEENTNL 187
D + +L
Sbjct: 164 DAEEVLRYLDL 174
>gi|42780534|ref|NP_977781.1| radical SAM domain-containing protein [Bacillus cereus ATCC 10987]
gi|42736454|gb|AAS40389.1| radical SAM domain protein [Bacillus cereus ATCC 10987]
Length = 238
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFP-----------------QVNVS 159
G+ ID I +SPK Q+L + +
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFEYA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + + F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPHVPFFLQVGNDDTKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 228
>gi|145219296|ref|YP_001130005.1| radical SAM domain-containing protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205460|gb|ABP36503.1| Radical SAM domain protein [Chlorobium phaeovibrioides DSM 265]
Length = 223
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 78/235 (33%), Gaps = 53/235 (22%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
L I EIF ++QGE +AG F R +GC S CR+CD+ +
Sbjct: 5 LLKISEIFRSIQGESSYAGWPCAFIRLAGC-----------SHNCRYCDSLYARNTE--- 50
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
R ++ +TGGEPL Q L+ L G ++ +ET G
Sbjct: 51 ERLTTREVVSRALALKTE------IIEITGGEPLEQPGVHQLMTELCNTGRKVLLETGGF 104
Query: 122 IEPPQ----------------------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
I ++ I ++ KAG +L + E K+V N
Sbjct: 105 IPVAGIDPRVHKIIDLKPPSSGESGKNCMENITLAFKAGKEL--QKSFEFKMVVADRNDY 162
Query: 160 PE------NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
+ + + G LA + R+ +Q HK +
Sbjct: 163 LWSRDLLRMHPLQKSCTVLMGVVAGELAPA--QLADWILEDGLRVRMQLQLHKLL 215
>gi|310640608|ref|YP_003945366.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2]
gi|309245558|gb|ADO55125.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2]
Length = 265
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 81/240 (33%), Gaps = 51/240 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E+F T+QGEG GR +F R +GC+ C +CD+ F G+
Sbjct: 28 PVLEVFGPTVQGEGMVIGRKTMFVRTAGCD-----------YHCSWCDSAFTW-DGSAKD 75
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
+ D+ +E G + + L+GG P LL LI L +G AVET G+
Sbjct: 76 QIRRLSATDIWQELKSIGGERFSHVTLSGGNPALLPQLGALITLLRSQGIATAVETQGSR 135
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKL-------------------VFPQVNVSPE 161
ID + +SPK + L +F +++
Sbjct: 136 WQEWLYDIDEVTLSPKPPSSGMTTNWEVLDDIVTRLSNQRMAGACSLKVVIFNDTDLAYA 195
Query: 162 NYIGFDFERF--SLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
I + LQ + ENT +W R+ Q H
Sbjct: 196 RTIHERYPHIPLFLQTGNPDVNTENTGQIAESLLHRYEWLIDRVMDDSRLNDVRVLPQLH 255
>gi|228475320|ref|ZP_04060044.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
hominis SK119]
gi|314936991|ref|ZP_07844338.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus hominis subsp. hominis C80]
gi|228270696|gb|EEK12110.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Staphylococcus
hominis SK119]
gi|313655610|gb|EFS19355.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Staphylococcus hominis subsp. hominis C80]
Length = 238
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 16/155 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG GR +F R +GC+ +C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DGSAKD 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
+ D+ + G + + ++GG P L++ L+ ++ A+ET G
Sbjct: 54 DIELLTAQDIYDRLKEIGGNQFDHVTISGGNPALIKGIQDLVDLFEEKNIFTALETQGSK 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
+ I+ + +SPK + + L V Q
Sbjct: 114 FQPWMRQINDLTISPKPPSSNMVPNLEILDSVIEQ 148
>gi|322392672|ref|ZP_08066132.1| ExsD protein [Streptococcus peroris ATCC 700780]
gi|321144664|gb|EFX40065.1| ExsD protein [Streptococcus peroris ATCC 700780]
Length = 238
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGTYD-----YVTLSGGNPALLAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + ++ +
Sbjct: 112 GSRWQTWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSHLDPDKVTFKIPVFNEEDLEFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + + L G + T + R+ Q H
Sbjct: 172 DIQKRYKPDVLYLS--AGNPEPKATGNIVQDQLDRLKELWERIAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|94264593|ref|ZP_01288377.1| Radical SAM [delta proteobacterium MLMS-1]
gi|93454947|gb|EAT05184.1| Radical SAM [delta proteobacterium MLMS-1]
Length = 224
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 86/226 (38%), Gaps = 41/226 (18%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF ++QGE AG +F R +GCNL +C +CD + + G Y
Sbjct: 9 LSEIFYSIQGESTLAGYPCLFIRLAGCNL-----------RCSYCDARYTYEE--PGQSY 55
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE- 123
+++ + + E G + +TGGEPLLQ V PL+ L RG ++ +ETNGT
Sbjct: 56 SLEGVLKAMAEVGP-GGRPVELVEITGGEPLLQEGVYPLLDVLLARGHQVLLETNGTRSL 114
Query: 124 ------PPQGIDWICVS------PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+D C + ++ G E+K V N + ++
Sbjct: 115 ARLPAAVRCIMDIKCPASGMAAHFMPENLHRLTGDDEIKFVIG--NRADYDWAKALLNHH 172
Query: 172 SL---------QPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
L P+ + + RL +Q H +
Sbjct: 173 QLTGLGPTLTFSPVTDRLAAADLAAWLLADALPA--RLQLQLHTLL 216
>gi|322388780|ref|ZP_08062377.1| ExsD protein [Streptococcus infantis ATCC 700779]
gi|321140399|gb|EFX35907.1| ExsD protein [Streptococcus infantis ATCC 700779]
Length = 238
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAELDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGITLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 NIQERYKPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWERVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|15891589|ref|NP_357261.1| radical activating protein [Agrobacterium tumefaciens str. C58]
gi|15160025|gb|AAK90046.1| radical activating protein [Agrobacterium tumefaciens str. C58]
Length = 251
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 15/137 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CDT +
Sbjct: 16 RISEIFGPTIQGEGPLIGLPTVFVRTGGCD-----------YRCSWCDTLHA-VDSEYRD 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + +E L+GG P +Q LI G+ A+ET G+
Sbjct: 64 TWKPMSVEAIWQEVLGLSGGMPLTVSLSGGNPAIQPLGTLIAKGQGEGYRFALETQGSIA 123
Query: 122 IEPPQGIDWICVSPKAG 138
+ +D + +SPK
Sbjct: 124 KDWFADLDHLVLSPKPP 140
>gi|16078438|ref|NP_389257.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309238|ref|ZP_03591085.1| hypothetical protein Bsubs1_07606 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313566|ref|ZP_03595371.1| hypothetical protein BsubsN3_07547 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318488|ref|ZP_03599782.1| hypothetical protein BsubsJ_07481 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322761|ref|ZP_03604055.1| hypothetical protein BsubsS_07587 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321315129|ref|YP_004207416.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5]
gi|81341926|sp|O31677|QUEE_BACSU RecName: Full=7-carboxy-7-deazaguanine synthase; Short=CDG
synthase; AltName: Full=Queuosine biosynthesis protein
queE
gi|2633745|emb|CAB13247.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. subtilis
str. 168]
gi|320021403|gb|ADV96389.1| queuosine biosynthesis enzyme [Bacillus subtilis BSn5]
Length = 243
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 51/243 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGSAKK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
++ E G + ++GG P LL+ I+ L + A+ET G
Sbjct: 54 DIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENNIRAALETQGTV 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI-----------GFDFE 169
+ ID + +SPK + Q+L + + + + +F
Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHAVSLKVVIFNDEDLEFA 173
Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQNPK--------------WRLSVQTH 205
+ F LQ + + I++ + R+ Q H
Sbjct: 174 KTVHKRYPGIPFYLQVGNDDVHTTDDQSLIAHLLGKYEALVDKVAVDAELNLVRVLPQLH 233
Query: 206 KFI 208
+
Sbjct: 234 TLL 236
>gi|196247860|ref|ZP_03146562.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. G11MC16]
gi|196212644|gb|EDY07401.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Geobacillus sp. G11MC16]
Length = 244
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 90/247 (36%), Gaps = 52/247 (21%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + EIF T+QGEG G+ +F R +GC+ +CR+CD+ F G+
Sbjct: 3 RTIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCRWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
D+ + G + R+ ++GG P LL L+ L+++G ++AVET
Sbjct: 51 AKEEIEQLTAEDIWQRLEAIGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQ 110
Query: 120 GTIE--PPQGIDWICVSPKAGC-------------------DLKIKGGQELKLVF---PQ 155
G+ +D + +SPK D LK+V
Sbjct: 111 GSRWQDWLLDVDDVTISPKPPSSGMDTDWAMLDSIIRKLLADQNRTRRVSLKVVVFDEAD 170
Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLA-------ISYCFQN-------PKWRLS 201
+ + E + + F LQ + +TN + + + +
Sbjct: 171 LAYAKEVHRRYPGVPFYLQTGNADVEALDTNALRMKLFDQLDWLVERVAQSDELNDVHVL 230
Query: 202 VQTHKFI 208
Q H +
Sbjct: 231 PQLHTLL 237
>gi|319652978|ref|ZP_08007083.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2]
gi|317395327|gb|EFV76060.1| radical SAM domain-containing protein [Bacillus sp. 2_A_57_CT2]
Length = 243
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 81/247 (32%), Gaps = 52/247 (21%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSSFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ +E G + ++GG P LL+ LI L +I +ET
Sbjct: 49 SAKDSIRQMEPDEIWKELKELGGDGFSFVTISGGNPALLKNLSELISLLKAEKIKICLET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-----------------NVS 159
G+ ID + +SPK L + + +
Sbjct: 109 QGSRWQDWFYEIDELTLSPKPPSSGMKTDFDVLGYIVNNLQTKRKAEQQVSLKIVVFDDK 168
Query: 160 PENYIGFDFER-----FSLQPMD------------GPFLEENTNLAISYCFQN--PKWRL 200
Y +R F LQ + L++ L N ++
Sbjct: 169 DYEYAKNIHKRYPGVPFYLQVGNDDTVTADDRNLLQKLLDKYDWLIEKTIHDNDLTDVKV 228
Query: 201 SVQTHKF 207
Q H +
Sbjct: 229 LPQLHTY 235
>gi|228477559|ref|ZP_04062192.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius
SK126]
gi|228250703|gb|EEK09901.1| pyruvate-formate lyase-activating enzyme [Streptococcus salivarius
SK126]
Length = 247
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 80/240 (33%), Gaps = 50/240 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 17 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 65
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ + ++ Y L+GG P L L+ L RG +AVET
Sbjct: 66 PTRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARGVTLAVETQ 120
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
G+ + ID + +SPK + L + Q++ + FD + +
Sbjct: 121 GSRWQEWLKDIDQVTLSPKPPSSKMEVNMETLDFIVSQLDPDKVTFKVPVFDDDDLAFAK 180
Query: 176 MDGPFLEENTNL-------------AISYCFQNP--------------KWRLSVQTHKFI 208
M + + + + R+ Q H +
Sbjct: 181 MIQERYQPDVMFLSAGNPEPKAEGNIVQHQLDRLKELWETVAADDSWGNVRVLPQLHTLL 240
>gi|289551435|ref|YP_003472339.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis
HKU09-01]
gi|289180966|gb|ADC88211.1| Queuosine Biosynthesis QueE Radical SAM [Staphylococcus lugdunensis
HKU09-01]
Length = 238
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG GR +F R +GC+ +C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGRVIGRKTMFVRTAGCD-----------YRCSWCDSVFTW-DGSAKD 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
+ + ++ E+ G + ++GG P L++ L+ A+ET G
Sbjct: 54 QIQLMSATEIYEKLIEIGGDCFDHVTISGGNPALIKGIQDLVDLFETEHIATALETQGSK 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
I+ + +SPK + L V Q
Sbjct: 114 FQPWMTQINDLTISPKPPSSSMTPNLEVLDQVIAQ 148
>gi|307709658|ref|ZP_07646110.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
SK564]
gi|307619556|gb|EFN98680.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
SK564]
Length = 238
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T I R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIIQDQLDRLKELWERIAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|307707096|ref|ZP_07643893.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
mitis SK321]
gi|307617622|gb|EFN96792.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
mitis SK321]
Length = 238
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T I R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIIQDQLDRLKELWERVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|327198318|ref|YP_004306892.1| QueE [Streptococcus phage Dp-1]
gi|314912620|gb|ADT64011.1| QueE [Streptococcus phage Dp-1]
Length = 264
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G+ +F R GC+ C +CD+ F T+
Sbjct: 24 PIMEIFGPTIQGEGMVIGQKTIFIRTGGCD-----------YHCNWCDSAFTWNGTTEPE 72
Query: 64 RYNVDQLADLIEEQWITGEKE--GRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
+ A I + + E + LTGG P L + +I L + GF+ +ET
Sbjct: 73 YITGKEAASRILKLAFNDKGEQICNHVTLTGGNPALINEPMAKMISILKEHGFKFGLETQ 132
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
G E + + I +SPK + L+ + ++N ++
Sbjct: 133 GTRFQEWFKEVSDITISPKPPSSGMRTNMKILEAIVDRMNDENLDW 178
>gi|260892494|ref|YP_003238591.1| Radical SAM domain protein [Ammonifex degensii KC4]
gi|260864635|gb|ACX51741.1| Radical SAM domain protein [Ammonifex degensii KC4]
Length = 251
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/251 (22%), Positives = 85/251 (33%), Gaps = 59/251 (23%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQG 59
++EIF ++QGEG + G +F RF+GCNL CR+CDT ++
Sbjct: 12 PLREIFSSVQGEGPYVGVRHLFVRFAGCNLT-----------CRYCDTPRDIPATCRVEV 60
Query: 60 TKGGRY--------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNK 109
G ++ +++ L+ LTGGEPLL L+ AL +
Sbjct: 61 VAGRQHFFHLPNPLTPEEVVLLVSNLLRQLRHGA--VALTGGEPLLYPAFLRELLPALRQ 118
Query: 110 RGFEIAVETNGTIEPPQGID---------WICVSPKAGCDLKIKGGQE-----------L 149
G + +ETNGT+ + + G +E L
Sbjct: 119 IGCRVYLETNGTLPYALEEVADLVDVVAMDLKLPSSTGLKPYWSEHEEFLAKLKGKEVIL 178
Query: 150 KLVFPQVNVSPE-----NYIGFDFERFSLQPMDGP---FLEENTNLAI--SYCF-QNPKW 198
K V + E LQP+ F L + +
Sbjct: 179 KAVVSRQATREEVERAGELAEKAGAVLVLQPVTTKNPNFRPSGMRLLEMQEWALGKTSDV 238
Query: 199 RLSVQTHKFIG 209
RL Q HKF G
Sbjct: 239 RLIPQVHKFCG 249
>gi|218288587|ref|ZP_03492864.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1]
gi|218241244|gb|EED08419.1| Radical SAM domain protein [Alicyclobacillus acidocaldarius LAA1]
Length = 250
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 79/239 (33%), Gaps = 53/239 (22%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ EIF T++GEG AG F R CNL +C +CDT +
Sbjct: 24 TLPMVEIFETVEGEGTKAGFPTTFVRVFHCNL-----------RCTWCDTPYSYAPERPA 72
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE----IAVET 118
+ ++A +E LTGGEPL+ + G E + +ET
Sbjct: 73 FHATLREIAQQVEA------FGWPNVCLTGGEPLIHRHKSQLLIEAIAGIEWVRDVHIET 126
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKI-----------------------KGGQELKLVFP- 154
NG I+ + + S + ++ E+K V
Sbjct: 127 NGAIDVRPFVRFRDASTRLREVVRFIVDYKLPASGEESRMIGEHLTSLSERDEVKFVIAD 186
Query: 155 QVNVSPENYIGFDF---ERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + + + + P+ + ++ ++ +L++Q HK I
Sbjct: 187 ERDFARALEVMEAHPTRATILMSPVWETMPPRDL---VALILKHRLRDVKLNLQLHKVI 242
>gi|324325459|gb|ADY20719.1| radical SAM domain-containing protein [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 238
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P L ++ + L + G A+ET
Sbjct: 49 SAKDQIRQMTAEDVWNELVEIGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER- 170
G+ ID I +SPK Q+L + +++ + + +DFE
Sbjct: 109 QGSKWQDWLLQIDEITISPKPPSSTMKTDFQKLDAMIQKLSGKDISLKVVVFDDYDFEYA 168
Query: 171 -----------FSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
F LQ + + + I +W ++ Q H
Sbjct: 169 VKMHERYPDVPFFLQVGNDDTKTVDDTMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 228
>gi|126459256|ref|YP_001055534.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
11548]
gi|126248977|gb|ABO08068.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 216
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/224 (25%), Positives = 87/224 (38%), Gaps = 42/224 (18%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF +LQGEG + G+ AVF R +GC +C +CDT++ G
Sbjct: 2 RVLEIFASLQGEGVNLGKPAVFVRLAGCP-----------IRCVYCDTEYSW-DFNGGVE 49
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121
+ + EE + G + V+TGGEPL+ + L+ L + G + VET+G
Sbjct: 50 MSPGEAVRRAEELGVRG-----HVVVTGGEPLVWMRRGLEELVCGLRRLG-AVEVETSGV 103
Query: 122 I----EPPQGIDWICVSP-------KAGCDLKIKGGQELKLVFPQVNVSPENYI------ 164
E D+ VSP KA ++ F +V+
Sbjct: 104 YAPTPELDACADFYDVSPKLSNAGVKAPLSPFYPKSPKVWFKFVVADVADVEEALAYVRE 163
Query: 165 -GFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRLSVQTH 205
G +R L PM EE+ + I R++ + H
Sbjct: 164 RGIPLDRVMLMPMS-KTPEEHAEVLRRIWDAAVRAGLRVTPRLH 206
>gi|308173345|ref|YP_003920050.1| QueE [Bacillus amyloliquefaciens DSM 7]
gi|307606209|emb|CBI42580.1| QueE [Bacillus amyloliquefaciens DSM 7]
gi|328553728|gb|AEB24220.1| QueE [Bacillus amyloliquefaciens TA208]
gi|328911423|gb|AEB63019.1| queuosine biosynthesis protein QueE [Bacillus amyloliquefaciens
LL3]
Length = 243
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 80/243 (32%), Gaps = 51/243 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGSAKK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
D+ E G + ++GG P LL+ LI L G A+ET G
Sbjct: 54 DIRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDALILLLKDHGVRAALETQGTV 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-----------NYIGFDFE 169
+ I+ + +SPK +L + ++ + N F
Sbjct: 114 YQDWFTMINDLTISPKPPSSGMTTDFAKLDHIVSSLDAAERLSAVSLKVVIFNDEDLQFA 173
Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQNPK--------------WRLSVQTH 205
+ F LQ + + I++ + R+ Q H
Sbjct: 174 KTVHKRYPNIPFYLQVGNDNVHTTDDQALIAHLLGKYEKLVDKVSADADLNLVRVLPQLH 233
Query: 206 KFI 208
+
Sbjct: 234 TLL 236
>gi|149203608|ref|ZP_01880577.1| radical activating protein [Roseovarius sp. TM1035]
gi|149142725|gb|EDM30767.1| radical activating protein [Roseovarius sp. TM1035]
Length = 240
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 77/237 (32%), Gaps = 48/237 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ VF R GC+ +C +CD+ ++
Sbjct: 6 RVSEIFGPTIQGEGALIGQPTVFVRTGGCD-----------YRCVWCDSLHA-VESAYRE 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ E L+GG P +Q LI + RG+ A+ET G+
Sbjct: 54 TWVPMSPEVVLAEVARLSGGRPIMVTLSGGNPAIQPLGALIDLGHARGYRFAMETQGSVA 113
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKL---------------VFPQVNVSPENYIGF 166
+ +D + +SPK VF + + +
Sbjct: 114 RDWFAALDMLVLSPKPPSSGMEVDWALFDDCVAAAKGAASVLKIVVFDEADYEWARAVAG 173
Query: 167 DFER--FSLQP-MDGPFLEENTNLAISY--CFQNPKW-------------RLSVQTH 205
+ + LQP P E+ + +W ++ Q H
Sbjct: 174 RYPQLPLYLQPGNHTPPPPEDDAATVDQAGIDARMRWLVERVTGDGWFDAKVLPQLH 230
>gi|163939249|ref|YP_001644133.1| radical SAM domain-containing protein [Bacillus weihenstephanensis
KBAB4]
gi|163861446|gb|ABY42505.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4]
Length = 238
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 81/240 (33%), Gaps = 47/240 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVLEIFGPTIQGEGMVVGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + D+ E G + + ++GG P LL+ L+ L + G AVET
Sbjct: 49 SAKDQIKQMTPEDIWNELVEIGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFP-----------------QVNVS 159
G+ ID + +SPK L V +
Sbjct: 109 QGSKWQDWLLQIDEVTISPKPPSSTMKTDFHMLDSVIHKLAGKDFSLKVVVFDDQDFEYA 168
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + + F LQ + + + I + +W ++ Q H
Sbjct: 169 VKMHERYPNVPFFLQVGNDDTKTVDDAVLIKKLLEKYEWLIEKAVNCKEMNDAKVLPQLH 228
>gi|212639793|ref|YP_002316313.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1]
gi|212561273|gb|ACJ34328.1| Organic radical activating enzyme [Anoxybacillus flavithermus WK1]
Length = 240
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 49/242 (20%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ + E+F T+QGEG G+ +F R +GC+ +CR+CD+ F G
Sbjct: 1 MEHIPVIEMFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCRWCDSSFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ D+ ++ G + ++GG P LL+ LI L + I +ET
Sbjct: 49 SAKNEVKQMTAEDIWQQLKQLGGDRFNHVTISGGNPALLKGLRALISLLKEHNIRIGLET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV------------SPENYI 164
G++ ID + +SPK L + ++ E++
Sbjct: 109 QGSVWQDWFYDIDDLTISPKPPSSNMKTNFTMLDTIMERLTAHRGHVSLKVVVFDDEDFA 168
Query: 165 GFDFER-------FSLQPMDGPFLEEN--------TNLAISYCF------QNPKWRLSVQ 203
F +Q + E + + R+ Q
Sbjct: 169 YAKHVHQRYPTVPFYVQVGNDHIHEADDVTLRLQLLQKLEWLVEQVVQSNEMNDVRVLPQ 228
Query: 204 TH 205
H
Sbjct: 229 LH 230
>gi|163746924|ref|ZP_02154281.1| Radical SAM [Oceanibulbus indolifex HEL-45]
gi|161380038|gb|EDQ04450.1| Radical SAM [Oceanibulbus indolifex HEL-45]
Length = 235
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 73/241 (30%), Gaps = 47/241 (19%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCD-----------YRCSWCDSLHA-VESQ 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ D+ + + L+GG P +Q PLI+ + A ET G
Sbjct: 49 YRHTWAPMSSEDVWRKVRKLSGGQPLTVSLSGGNPAIQDFGPLIKMGKAADYRFACETQG 108
Query: 121 T--IEPPQGIDWICVSPKAGCDLKIKGGQELK-----------LVFPQVNVSPENYIGFD 167
+ +D + +SPK + V V +Y
Sbjct: 109 SIARPWFADLDTLVLSPKPPSSGEDVDWDAFDACRTIGAKARQQVMKIVIFDEIDYQWAR 168
Query: 168 FER-------FSLQPMDGPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP P ++ T + W R+ Q H
Sbjct: 169 EVHAHHLDIPLYLQPG-NPEVDPATPVDPQALADRLGWLTEMAMADSWFAPRILPQLHVL 227
Query: 208 I 208
I
Sbjct: 228 I 228
>gi|152991323|ref|YP_001357045.1| hypothetical protein NIS_1581 [Nitratiruptor sp. SB155-2]
gi|151423184|dbj|BAF70688.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 252
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 15/207 (7%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG--REQDRLSAQCRFCDTDFVG---- 56
+ + E F ++QGEG G +VF RF GCNL E CD+
Sbjct: 1 MLYLVEDFYSIQGEGKFIGTPSVFFRFGGCNLKCPSFGEYFIQGRIVHGCDSIRAVNREL 60
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI----QALNKRGF 112
Q D+L +++ + + + V+TGGEPL+ + P+ + L + G+
Sbjct: 61 FQSKWKEIGTKDELIEILHSHVEYLDFK-PHIVITGGEPLIYWNDPVFYGFLEYLVEEGY 119
Query: 113 EIAVETNGT--IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ +ETN T I+ + + V L G + K V + + G+ F +
Sbjct: 120 IVTIETNATIVIDFEKYPAYKDVIFAMAVKLANSGEKYEKRVNKKAIEAIAVNTGYSFFK 179
Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPK 197
F+L G + + P+
Sbjct: 180 FTL--DRGSVQMRAYEEIVDIVGEYPE 204
>gi|296329700|ref|ZP_06872185.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674097|ref|YP_003865769.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153198|gb|EFG94062.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412341|gb|ADM37460.1| queuosine biosynthesis enzyme [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 243
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 51/243 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGSAKK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
++ E G + ++GG P LL+ I+ L + A+ET G
Sbjct: 54 DIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENNIRAALETQGTV 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI-----------GFDFE 169
+ ID + +SPK + Q+L + + + + +F
Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLKENNRQHAVSLKVVIFNDEDLEFA 173
Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQNPK--------------WRLSVQTH 205
+ F LQ + + I++ + R+ Q H
Sbjct: 174 KTVHKRYPGIPFYLQVGNDDVHTTDDQSLIAHLLGKYEALVDKVAVDAELNLVRVLPQLH 233
Query: 206 KFI 208
+
Sbjct: 234 TLL 236
>gi|322377478|ref|ZP_08051969.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus sp. M334]
gi|321281678|gb|EFX58687.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus sp. M334]
Length = 238
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAR 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWERVATDDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|110636375|ref|YP_676583.1| radical SAM family protein [Mesorhizobium sp. BNC1]
gi|110287359|gb|ABG65418.1| preQ(0) biosynthesis protein QueE [Chelativorans sp. BNC1]
Length = 246
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/238 (20%), Positives = 76/238 (31%), Gaps = 49/238 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 11 RVAEIFGPTIQGEGPLIGLPTVFVRTGGCD-----------YRCAWCDSLHA-VDTQYRH 58
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + E+ + L+GG P +Q LI G+ A+ET G+
Sbjct: 59 DWEPMTAKAVWEKVQVLSANTPLMVSLSGGNPAIQPLGDLIALGKSSGYRFALETQGSLA 118
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV--------NVSPENYIGFDFER--- 170
E +D + +SPK Q L + + + + F R
Sbjct: 119 REWFSELDVLIISPKPPSSGMEMDWQRLSDCIARAGEGTEVALKIVIFDEADYAFARAVS 178
Query: 171 -------FSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTH 205
LQP + P + I + +W R+ Q H
Sbjct: 179 ARHGGLPLYLQPGNHTPPPADAHYAPIDIEGVMRRMRWLINKVAADAWFSVRVLPQLH 236
>gi|149919125|ref|ZP_01907609.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1]
gi|149820055|gb|EDM79476.1| hypothetical protein PPSIR1_35157 [Plesiocystis pacifica SIR-1]
Length = 261
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
++E F+++QGEG G + F R SGCNL +C +CDT +G
Sbjct: 18 LRVQERFVSIQGEGSLVGVRSSFVRVSGCNL-----------RCVWCDTPRTSWAP-EGE 65
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
R ++D L D W + R+ VLTGGEPLL L L G + +ET G++
Sbjct: 66 RASLDALVD-----WCGAPGQPRHVVLTGGEPLLFPACAELSARLRAAGHHLTIETAGSL 120
Query: 123 EPPQ-GIDWICVSPKAGCDLKI-KGGQELKLVFPQVNVS 159
D + +SPK + E K Q +
Sbjct: 121 WCEGVEADLMSISPKLSHSTPWARAAAEGKPSLAQRHED 159
>gi|307707501|ref|ZP_07643983.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261]
gi|307616453|gb|EFN95644.1| coenzyme PQQ synthesis [Streptococcus mitis NCTC 12261]
Length = 238
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGNYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWERVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|260463745|ref|ZP_05811943.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Mesorhizobium opportunistum WSM2075]
gi|319785229|ref|YP_004144705.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|259030599|gb|EEW31877.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Mesorhizobium opportunistum WSM2075]
gi|317171117|gb|ADV14655.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 244
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/245 (20%), Positives = 83/245 (33%), Gaps = 57/245 (23%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 9 RVSEIFGPTIQGEGVLIGLPTVFIRTGGCD-----------YRCSWCDSLHA-VDNQFRH 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + + + L+GG P +Q LI+ + G+ A+ET +
Sbjct: 57 EWKMMPVDAVWQSVVALSGARPVMVSLSGGNPAIQPFGGLIERGHAEGYRFALETQASVA 116
Query: 122 IEPPQGIDWICVSPKAGCDL---------------KIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK + K LKLV + S +
Sbjct: 117 KDWFAELDVLVLSPKPPSSEMRTDWVAFEACIEAAREKPQVVLKLVI--FDESDYAFAKD 174
Query: 167 DFERF-----SLQPMD---GPFLEENTNLAISY--CFQNPKW-------------RLSVQ 203
RF LQP + EE+ A+ + +W R+ Q
Sbjct: 175 AAARFPSLPVYLQPGNHTPPRRGEED--AAVDLAGIMRRMEWLIEKVTQDRWFEARVLPQ 232
Query: 204 THKFI 208
H +
Sbjct: 233 LHVLL 237
>gi|57505796|ref|ZP_00371721.1| radical SAM domain protein protein [Campylobacter upsaliensis
RM3195]
gi|57015826|gb|EAL52615.1| radical SAM domain protein protein [Campylobacter upsaliensis
RM3195]
Length = 247
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 9/199 (4%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTK 61
+ E FL++QGEG AG +A+F RF+GCN G ++ + + CDT
Sbjct: 2 KVVESFLSIQGEGKFAGLLAIFVRFAGCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEY 61
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVE 117
Y +L + V+TGGEPLL + I+ L + FE+ E
Sbjct: 62 QNTYENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFE 121
Query: 118 TNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
TN +I + G L G + K + + + + F +F L+
Sbjct: 122 TNASIRVDFKKYPLYKKCIFALGVKLSNSGVSKEKRLNYKALKAFKKEAKKSFYKFVLEE 181
Query: 176 MDGPFLEENTNLAISYCFQ 194
E+ +S
Sbjct: 182 EFLSKAEKEIKEILSVVKN 200
>gi|312865269|ref|ZP_07725497.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus downei F0415]
gi|311099380|gb|EFQ57596.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus downei F0415]
Length = 242
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 77/237 (32%), Gaps = 50/237 (21%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 12 KLPILEIFGPTFQGEGRAIGQKTMFIRTGGCD-----------YHCDWCDSAFTWDGSEK 60
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
DQ+ +++ Y L+GG P LQ L+ L RG +AVET
Sbjct: 61 ATPMTSDQVIAELDKLGTYD-----YVTLSGGNPCLQAANMEELVHKLKSRGVTLAVETQ 115
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ ID + +SPK + L + +++ +
Sbjct: 116 GSRWQDWLLDIDQVTLSPKPPSSKMEVNMETLDFIVGKLDSSKVTYKIPIFNDDDLAFAK 175
Query: 161 ENYIGFDFERFSLQPMDG----------PFLEENTNLAISYCFQN--PKWRLSVQTH 205
++ + L + L+ L + R+ Q H
Sbjct: 176 MIQARYNPDVLYLSVGNPEPKAEGDIVRHQLDRLQALWDKVAKDDSWGNVRVLPQLH 232
>gi|15679238|ref|NP_276355.1| coenzyme PQQ synthesis protein III [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622338|gb|AAB85716.1| coenzyme PQQ synthesis protein III [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 247
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E+F ++QGEG GR +F RF+GCNL C +CDT + G
Sbjct: 7 PIVEVFSSIQGEGLLVGRRQIFVRFAGCNLN-----------CSYCDTP-ESRDPSAGRL 54
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
+ +L ++IE +TGGEPLL D + + L + +ETNG++
Sbjct: 55 FTAPELTEIIEGLITPDFHS---ISITGGEPLLYPDF-ITELLEESPHRTLLETNGSLPS 110
Query: 125 PQG 127
Sbjct: 111 NAE 113
>gi|153008343|ref|YP_001369558.1| radical SAM domain-containing protein [Ochrobactrum anthropi ATCC
49188]
gi|151560231|gb|ABS13729.1| Radical SAM domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 246
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/218 (22%), Positives = 75/218 (34%), Gaps = 36/218 (16%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF TLQGEG G VF R GC+ +C +CD+ ++
Sbjct: 11 RIAEIFGPTLQGEGVLIGEPTVFVRTGGCD-----------YRCVWCDSLHA-VESRFRR 58
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E + L+GG P +Q PLI+ G+ A+ET G+
Sbjct: 59 EWKAMSVEAVWGEVTTLSRNKPLTVSLSGGNPAIQPLGPLIEHGKTEGYRFALETQGSVA 118
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQEL-----------KLVFPQVNVSPENYIGFDFER 170
+ +D + +SPK L + V V +Y+
Sbjct: 119 QDWFSALDTLVLSPKPPSSGMDADFDALAVCVEAAGRTPRTVLKFVIFDDADYVFAKDVA 178
Query: 171 -------FSLQP-MDGPFLEENTNLAISY--CFQNPKW 198
LQP P E + AI + +W
Sbjct: 179 SQYSGLPVYLQPGNHTPPPPEAHDAAIDIDGIMRRMEW 216
>gi|89097396|ref|ZP_01170285.1| radical SAM domain protein [Bacillus sp. NRRL B-14911]
gi|89087692|gb|EAR66804.1| radical SAM domain protein [Bacillus sp. NRRL B-14911]
Length = 241
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 85/243 (34%), Gaps = 50/243 (20%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKIPVMEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSSFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
T ++ E G + + ++GG P LL+ LI L K ++ +ET
Sbjct: 49 TGKELIRQMDAEEIWNELKAIGGEGFSFVTISGGNPALLKNLDKLISLLKKENIQLCLET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ----------VNVSPENYIGF 166
G+ ID + +SPK I + L +F + + V + F
Sbjct: 109 QGSRWQDWFYSIDQLTISPKPPSSGMITDFEILDDIFERLADRFTHQVSLKVVIFDENDF 168
Query: 167 DFER----------FSLQPMDGPFLEENTN------------LAISYCF--QNPKWRLSV 202
++ + LQ + N + L + + R+
Sbjct: 169 EYSKKVMKRYPGIPLYLQAGNEHLSAANNDEFLSQQLKKYSWLIEKAMLEEEMKEVRVLP 228
Query: 203 QTH 205
Q H
Sbjct: 229 QLH 231
>gi|291483909|dbj|BAI84984.1| hypothetical protein BSNT_02308 [Bacillus subtilis subsp. natto
BEST195]
Length = 243
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGSAKK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
++ E G + ++GG P LL+ I+ L + A+ET G
Sbjct: 54 DIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDVFIELLKENNIRAALETQGTV 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164
+ ID + +SPK + Q+L + + + +
Sbjct: 114 YQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHA 157
>gi|150377056|ref|YP_001313652.1| radical SAM domain-containing protein [Sinorhizobium medicae
WSM419]
gi|150031603|gb|ABR63719.1| Radical SAM domain protein [Sinorhizobium medicae WSM419]
Length = 245
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ ++ +
Sbjct: 10 RVSEIFGPTIQGEGVLIGLPTVFVRSGGCD-----------YRCSWCDSLHA-VESSYRH 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
++ + +E E L+GG P +Q LI ++ G+ A+ET G+
Sbjct: 58 EWHAMSTEAVWQEIVRLSRGEAVMVSLSGGNPAIQPFGDLIGRGHRNGYRFALETQGSIA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF--------------- 166
E +D + +SPK Q + P+ + F
Sbjct: 118 REWFAELDVLVLSPKPPSSGMETDWQAFDVCLRMAAGKPQTVLKFVVFDEADYAYARAAA 177
Query: 167 ---DFERFSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP + P +++ + + + +W R+ Q H
Sbjct: 178 ARHPHLPVYLQPGNHTPPPSDDKDAPIDLEGVMERMRWLVDATIEDGWFEARVLPQLHVL 237
Query: 208 I 208
I
Sbjct: 238 I 238
>gi|293365938|ref|ZP_06612641.1| ExsD protein [Streptococcus oralis ATCC 35037]
gi|307702341|ref|ZP_07639299.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
oralis ATCC 35037]
gi|322375722|ref|ZP_08050234.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus sp. C300]
gi|291315616|gb|EFE56066.1| ExsD protein [Streptococcus oralis ATCC 35037]
gi|307624144|gb|EFO03123.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
oralis ATCC 35037]
gi|321279430|gb|EFX56471.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus sp. C300]
Length = 238
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTTGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWERVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|20804218|emb|CAD31244.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A]
Length = 245
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 75/241 (31%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 10 RVSEIFGPTIQGEGVLIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDRRFRH 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG--T 121
+ + + ++ + L+GG P +Q LI + G+ A+ET G +
Sbjct: 58 DWEMMSPDAVWQKVIALSGGQPVMVSLSGGNPAIQPLSQLIDRGHGEGYRFALETQGSVS 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG---------------- 165
+ +D + +SPK P+ +
Sbjct: 118 KQWFADLDVLVLSPKPPSSEMTTDWAAFDACLEAAQDKPQMALKLVVFDDDDYAYAKDAA 177
Query: 166 --FDFERFSLQP-MDGPFLEENTNLAISY--CFQNPKW-------------RLSVQTHKF 207
+ LQP P + + I + +W R+ Q H
Sbjct: 178 ARYPQLPVYLQPGNHTPPRPGDEDAFIDMAGVMRRMEWLVEKVTRDRWFEARVLPQLHVL 237
Query: 208 I 208
+
Sbjct: 238 L 238
>gi|254457594|ref|ZP_05071022.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
gi|207086386|gb|EDZ63670.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
Length = 253
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 42/244 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG--REQDRLSAQCR--FCDTDFVGIQ 58
+ + E F ++QGEG + G ++F RF GCN+ ++ S + CDT + +
Sbjct: 1 MLYLVEHFYSIQGEGRYTGVPSLFFRFGGCNMKCEGFGCEEEASDGTKVLGCDTVYAVNK 60
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL--TGGEPLLQVDV----PLIQALNKRGF 112
++ Q + E R + TGGEPL+ + ++ L++ G
Sbjct: 61 EHFSFNWSPIQKTQELLNVLDLYELPQRPVDIVLTGGEPLIYANEGIFVEFLEKLHEEGH 120
Query: 113 EIAVETNG------TIEPPQGIDWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIG 165
+I ETNG P +S K + + +++ + + E +
Sbjct: 121 KITFETNGSIAVDFEKYPIYKECIFALSVKLSNSKEPFRKRVNGDVIYSIASNAKEAFFK 180
Query: 166 FDFE----------------------RFSLQPMDGPF--LEENTNLAISYCFQNPKWRLS 201
F + + P+ G +E NT I +C + S
Sbjct: 181 FSIDADSINLGLDEEIFNITLHSPRTQVYCMPLGGNKAEVEANTEPLIEFCKAK-GYNFS 239
Query: 202 VQTH 205
+ H
Sbjct: 240 DRLH 243
>gi|307705450|ref|ZP_07642305.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
SK597]
gi|307620985|gb|EFO00067.1| pyruvate-formate lyase-activating enzyme [Streptococcus mitis
SK597]
Length = 238
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 81/240 (33%), Gaps = 50/240 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAR 171
Query: 161 ENYIGFDFERFSLQ---P-------MDGPFLEENTNLAISYCFQN--PKWRLSVQTHKFI 208
+ + L P + L+ L + R+ Q H +
Sbjct: 172 GIQERYQPDVLFLSAGNPEPKTTGNIVQDQLDRLKELWERIAADDSWGNVRVLPQLHTLL 231
>gi|154685784|ref|YP_001420945.1| YkvL [Bacillus amyloliquefaciens FZB42]
gi|154351635|gb|ABS73714.1| YkvL [Bacillus amyloliquefaciens FZB42]
Length = 243
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 51/243 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGSAKK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
D+ E G + ++GG P LL+ LI L + G A+ET G
Sbjct: 54 DIRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDALILLLKEHGVRAALETQGTV 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE-----------NYIGFDFE 169
+ I+ + +SPK +L + ++ + N F
Sbjct: 114 YQDWFTMINDLTISPKPPSSGMTTDFAKLDHIVSSLDAAERLNAVSLKVVIFNDEDLQFA 173
Query: 170 R----------FSLQPMDGPFLEENTNLAISYCFQNPK--------------WRLSVQTH 205
+ F LQ + + I++ + R+ Q H
Sbjct: 174 KTVHKRYPNIPFYLQVGNDNVHTTDDRALIAHLLGKYETLVDKVSADSDLNLVRVLPQLH 233
Query: 206 KFI 208
+
Sbjct: 234 TLL 236
>gi|296272038|ref|YP_003654669.1| radical SAM domain-containing protein [Arcobacter nitrofigilis DSM
7299]
gi|296096213|gb|ADG92163.1| Radical SAM domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 249
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 21/205 (10%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDTDFVG 56
+ + EIF T+QGEG + G ++F RF CN E +C CD+ +
Sbjct: 1 MLEVNEIFGPTIQGEGKYVGNPSIFIRFGKCNFRCEGFAVEYETPSGVKKCS-CDSFYA- 58
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK----RGF 112
+ +++ ++I + V+TGGEPLL Q + K G+
Sbjct: 59 VDPAFKDQWHKMNKNEIINQVKKLEPSYKVDIVITGGEPLLYWKDEEFQEILKYYISNGY 118
Query: 113 EIAVETNG-----TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD 167
++ +ETNG + Q +S K L+ K V +
Sbjct: 119 KVTIETNGSLNIDFTKEYQKELIFSMSVKLSNSLEPLK----KRVNEETLKKIITNTKES 174
Query: 168 FERFSLQPMDGPFLEENTNLAISYC 192
+ +F + +E L S
Sbjct: 175 YLKFVISKEFITKAKEEIELISSII 199
>gi|148643115|ref|YP_001273628.1| coenzyme PQQ synthesis protein [Methanobrevibacter smithii ATCC
35061]
gi|148552132|gb|ABQ87260.1| coenzyme PQQ synthesis protein, SAM family [Methanobrevibacter
smithii ATCC 35061]
Length = 232
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 77/248 (31%), Gaps = 55/248 (22%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK I EIF + QGEG G+ +F RF+GCNL C +CDT+ + +
Sbjct: 1 MKA-PIIEIFSSFQGEGLFIGQRQIFVRFAGCNLN-----------CSYCDTNDSKSEKS 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G VD + IE + TGGEP L + + + + +I +ETNG
Sbjct: 49 -GKLMTVDDVLAAIEN---VRTPDCHVISFTGGEPSLYPEF-INEVARQTDLKILLETNG 103
Query: 121 TIEPPQGI----DWICVSPKAGCDLKIK-GGQELKLVFPQVNVSPENYIGFDFERFSL-- 173
T+ D + + K VN+ I + L
Sbjct: 104 TLPEKIDFIEKLDIVSLDIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVVLPS 163
Query: 174 ------QPMDGPFLEEN-----TNLAI--------------------SYCFQNPKWRLSV 202
Q + + I Q +
Sbjct: 164 TKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVSTIP 223
Query: 203 QTHKFIGI 210
Q HK + I
Sbjct: 224 QVHKILNI 231
>gi|116253993|ref|YP_769831.1| hypothetical protein RL4256 [Rhizobium leguminosarum bv. viciae
3841]
gi|115258641|emb|CAK09745.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 247
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 33/194 (17%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 5 TIRVSEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VESAF 52
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
++ + + + L+GG P +Q PLI+ + +G+ A+ET G+
Sbjct: 53 RDQWIPMSTEAVWHKVTELSGGKPLTVSLSGGNPAIQPLRPLIELGHSQGYRFALETQGS 112
Query: 122 --IEPPQGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENY 163
+ +D + +SPK + ++ VF +
Sbjct: 113 VAQAWFRDLDTLVISPKPPSSGMLTDWDQVDNCLQLAAGGPEVALKIVVFDDADYEFAQR 172
Query: 164 IGFDFERF--SLQP 175
G + + LQP
Sbjct: 173 AGQRYPQIPLFLQP 186
>gi|312863321|ref|ZP_07723559.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus vestibularis F0396]
gi|311100857|gb|EFQ59062.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Streptococcus vestibularis F0396]
Length = 238
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 80/240 (33%), Gaps = 50/240 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ + ++ Y L+GG P L L+ L RG +AVET
Sbjct: 57 PTRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---- 173
G+ + ID + +SPK + L + Q++ + F+ L
Sbjct: 112 GSRWQEWLKDIDQVTLSPKPPSSKMEVNMEILDFIVSQLDPDKLTFKVPVFDDADLAFAK 171
Query: 174 ------QP-----MDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHKFI 208
QP G + + + R+ Q H +
Sbjct: 172 MIQERYQPDVMFLSAGNPEPKAEGNIVQHQLDRLKELWETVAADDSWGNVRVLPQLHTLL 231
>gi|32472078|ref|NP_865072.1| radical activating enzyme [Rhodopirellula baltica SH 1]
gi|32397450|emb|CAD72756.1| conserved hypothetical protein-putative radical activating enzyme
[Rhodopirellula baltica SH 1]
Length = 257
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I E F++ QGEG G +VF R SGCNL +C FCDT + + +G R
Sbjct: 32 ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWKP-EGTRQ 79
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
++ L L+ + ++ VLTGGEPL+ V LI L G + +ET GT++P
Sbjct: 80 TIEDLLQLV------AKSGVKHVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 133
Query: 125 PQGIDWICVSPK 136
D + +SPK
Sbjct: 134 GARCDLLSLSPK 145
>gi|315638082|ref|ZP_07893267.1| radical SAM domain protein [Campylobacter upsaliensis JV21]
gi|315481930|gb|EFU72549.1| radical SAM domain protein [Campylobacter upsaliensis JV21]
Length = 247
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 9/199 (4%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTK 61
+ E FL++QGEG AGR+AVF RF+ CN G ++ + + CDT
Sbjct: 2 KVVESFLSIQGEGKFAGRLAVFVRFANCNFNCLGFGVKKQKEGRELVGCDTLRAVFTKEY 61
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVE 117
Y +L + V+TGGEPLL + I+ L + FE+ E
Sbjct: 62 QNTYENLNAKELFLRVLKMAKDLKPIIVITGGEPLLHHKKSEFLKFIKLLLEAKFEVHFE 121
Query: 118 TNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
TN +I + G L G + K + + + + F +F L+
Sbjct: 122 TNASIRVDFKKYPLYKKCVFALGVKLSNSGVSKEKRLNYKALKAFKKEAKKSFYKFVLEE 181
Query: 176 MDGPFLEENTNLAISYCFQ 194
EE +S
Sbjct: 182 EFLSRAEEEIKEILSVVKN 200
>gi|289167418|ref|YP_003445687.1| hypothetical protein smi_0570 [Streptococcus mitis B6]
gi|288906985|emb|CBJ21819.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 238
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PIRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAELVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAR 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWERIAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|306842891|ref|ZP_07475527.1| Radical SAM domain protein [Brucella sp. BO2]
gi|306286914|gb|EFM58434.1| Radical SAM domain protein [Brucella sp. BO2]
Length = 248
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/218 (21%), Positives = 77/218 (35%), Gaps = 36/218 (16%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 13 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 60
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q PLI+ G+ A+ET G+
Sbjct: 61 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLAPLIEHGKAEGYRFALETQGSVA 120
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQ---------------ELKLVF-PQVNVSPENYIG 165
+ +D + +SPK LK V + + + +
Sbjct: 121 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKFVIFDEADYAYARAVS 180
Query: 166 FDFERF--SLQP-MDGPFLEENTNLAISY--CFQNPKW 198
+ +QP P + + AI + +W
Sbjct: 181 ARHPQLPVYVQPGNHTPPPPDAEDAAIDIDGIMRRMEW 218
>gi|254446154|ref|ZP_05059630.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium
DG1235]
gi|198260462|gb|EDY84770.1| radical SAM domain protein, putative [Verrucomicrobiae bacterium
DG1235]
Length = 208
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/202 (24%), Positives = 70/202 (34%), Gaps = 32/202 (15%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---GTKGGRYNVDQLADLIEE 76
GR A F R GC + C +CD+ R + LAD +
Sbjct: 1 MGRSAYFIRLFGCPV-----------HCPWCDSAGTWHPDYVPKNVERVTPEALADAAKA 49
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP- 135
+ V+TGGEP++ L +AL RG +ET+G E DWI +SP
Sbjct: 50 ------SGAEFAVVTGGEPVIHDLKALSEALAARGIGRHLETSGGFEIRGDFDWITLSPK 103
Query: 136 --KAGCDLKIKGGQELKLVFPQVNVSPENYIG------FDFERFSLQPMDGPFLEENTNL 187
K ++ E KL+ N S E +I + L P
Sbjct: 104 WQKEPLVENLEKASEFKLIVEDEN-SIEGWIRSVGGFFVSDKPVWLHPEWSQRGNAAVLE 162
Query: 188 AI-SYCFQNP-KWRLSVQTHKF 207
+I + +R Q HK
Sbjct: 163 SITRTVKELGDPYRAGFQLHKL 184
>gi|222445352|ref|ZP_03607867.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii
DSM 2375]
gi|261350087|ref|ZP_05975504.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM
2374]
gi|222434917|gb|EEE42082.1| hypothetical protein METSMIALI_00980 [Methanobrevibacter smithii
DSM 2375]
gi|288860873|gb|EFC93171.1| coenzyme PQQ synthesis protein III [Methanobrevibacter smithii DSM
2374]
Length = 232
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 79/248 (31%), Gaps = 55/248 (22%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK I EIF + QGEG G+ +F RF+GCNL C +CDT+ + +
Sbjct: 1 MKA-PIIEIFSSFQGEGLFIGQRQIFVRFAGCNLN-----------CNYCDTNDSKSEKS 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G VD++ IE+ + TGGEP L + + + + +I +ETNG
Sbjct: 49 -GKLMTVDEVLAAIEK---VRTPDCHVISFTGGEPSLYPEF-INEVARQTDLKILLETNG 103
Query: 121 TIEPPQGI----DWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSL-- 173
T+ D + + K VN+ I + L
Sbjct: 104 TLPEKIDFIEKLDIVSLDIKLPEHFNNDFDKDIFINEIKSVNLLMAKSIMLYCKVVVLPS 163
Query: 174 ------QPMDGPFLEEN-----TNLAI--------------------SYCFQNPKWRLSV 202
Q + + I Q +
Sbjct: 164 TKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVSTIP 223
Query: 203 QTHKFIGI 210
Q HK + I
Sbjct: 224 QVHKILNI 231
>gi|163754267|ref|ZP_02161390.1| GTPase ObgE [Kordia algicida OT-1]
gi|161326481|gb|EDP97807.1| GTPase ObgE [Kordia algicida OT-1]
Length = 253
Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 85/244 (34%), Gaps = 61/244 (25%)
Query: 1 MKLYSIK------EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
M I EIF ++QGEG + G+ +VF R S CNL C +CDTD+
Sbjct: 1 MTKLKIANLNGKPEIFHSIQGEGKNLGQPSVFIRTSLCNL-----------HCIWCDTDY 49
Query: 55 VG-IQGT------------KGGRYNVDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQVD 100
+ T + + + ++ +EE + + + VLTGGEP++Q+
Sbjct: 50 TWNWEKTRFAHVKDSDPLYEKYKMDEMIISLTLEEIYNEVAKSGCKNIVLTGGEPMMQLQ 109
Query: 101 VP----LIQALNKRGFEIAVETNGTIEPPQGI----DWICVSPKAGCDLKIKGGQE---- 148
+ +ETNGT+ P D VSPK K +E
Sbjct: 110 ELSALMKFFNTKATDYFFEIETNGTLLPDATFDALIDQYNVSPKLANSNNPKKLREKPEA 169
Query: 149 -----------LKLVFPQVNVSPE-----NYIGFDFERFSLQPM--DGPFLEENTNLAIS 190
K V N E ++ L P + L++ I
Sbjct: 170 YQYFSKNEKAVFKFVISSENDLTEVLEICKNYNIPKQKVYLMPEGTNPEALQKKQQWLIE 229
Query: 191 YCFQ 194
C +
Sbjct: 230 ICKK 233
>gi|86740458|ref|YP_480858.1| radical SAM family protein [Frankia sp. CcI3]
gi|86567320|gb|ABD11129.1| Radical SAM [Frankia sp. CcI3]
Length = 251
Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 20/176 (11%)
Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ---GTK 61
+ EIF T+QGEG GR VF R GCNL C +CDT +
Sbjct: 21 VNEIFGPTVQGEGPSTGRRCVFLRLGGCNLT-----------CSWCDTPYTWDWWGVSDT 69
Query: 62 GGRYNVDQLADLIEEQWI---TGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAV 116
G R++ + + + V++GGEPL + + L+ L G E+ +
Sbjct: 70 GRRFDPGRELHAMSAAQVGDRLRGLGSGLVVISGGEPLSQQRRLLGLVTGLVDDGIEVEI 129
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
ETNGT+ P + + V+ L G E + + P+ + F+
Sbjct: 130 ETNGTVAPLEELAESGVAFNVSVKLAHSGVAEPRRLVPEALAAFAGNPSARFKFVC 185
>gi|238018973|ref|ZP_04599399.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748]
gi|237864457|gb|EEP65747.1| hypothetical protein VEIDISOL_00833 [Veillonella dispar ATCC 17748]
Length = 247
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 54/256 (21%), Positives = 78/256 (30%), Gaps = 74/256 (28%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF ++ GEG G + F R CN +C +CDT + +
Sbjct: 3 VIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSTFTDM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-------------------VDVPLIQA 106
V ++AD IE +TGGEPLLQ D P
Sbjct: 52 TVREVADAIESL------GNHRITITGGEPLLQEAAVVELIDELNRRKSAKLEDEPCTDI 105
Query: 107 LNKRGFEIA----------------VETNGTIEPPQGID--WICVSPKAGCDLKIKGG-- 146
+ G ++ +ETNGTI P + W K L K
Sbjct: 106 KSTTGINVSVDAQDVLDSESLYDFNIETNGTIIPSFHRENVWFTYDYKTPSSLAEKSMNL 165
Query: 147 ---------QELKLVFPQVNVSPENYIGFD----FERFSLQPMDGPFLEENTNLAISYCF 193
+K V V + + + P+ G I Y
Sbjct: 166 DIFKVSREQDLIKFVVGSVEDLDCMRHMINQYPTKAQIYVSPVWGKIEAAA---IIDYMN 222
Query: 194 QNP--KWRLSVQTHKF 207
++ R +Q HKF
Sbjct: 223 EHNLQNVRFQLQIHKF 238
>gi|270293087|ref|ZP_06199298.1| ExsD protein [Streptococcus sp. M143]
gi|270279066|gb|EFA24912.1| ExsD protein [Streptococcus sp. M143]
Length = 238
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEINFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWERVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|326203402|ref|ZP_08193266.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
gi|325986222|gb|EGD47054.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
Length = 249
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 56/250 (22%), Positives = 86/250 (34%), Gaps = 66/250 (26%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGG 63
I EIF ++ GEG AG V F R +GCNL +C +CDT + + G
Sbjct: 12 PIIEIFNSVSGEGISAGSVVTFVRAAGCNL-----------RCNYCDTKYSYNELGNGIQ 60
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
D + +++E + + TGGEPL L L +GF++ +ETNG+
Sbjct: 61 VLKPDGIVNILE------SYNCKNVLCTGGEPLELNKAKRYLPLYLASKGFKVRIETNGS 114
Query: 122 IEPPQ-----------------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS----P 160
P +G + +L+ P+ +
Sbjct: 115 CPLYSKTELNDFAVDNISFLTLNYALDVKCPDSGMSNYNIYNENFELLGPEDEIKFIVGT 174
Query: 161 ENYIGFDFERFS--------------LQPMDGPFLEENTNLAISYCFQN--------PKW 198
+ F FE P+ G E ++ +N
Sbjct: 175 RRDLKFAFETIKEYSNILSKTGVTINFLPVFGKL--EAIE-IVNMLKENNAYFEKYGLNV 231
Query: 199 RLSVQTHKFI 208
RLS+Q HKFI
Sbjct: 232 RLSLQIHKFI 241
>gi|315613640|ref|ZP_07888547.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
sanguinis ATCC 49296]
gi|315314331|gb|EFU62376.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptococcus
sanguinis ATCC 49296]
Length = 238
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIVQDQLDRLKELWECVATDDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|11498053|ref|NP_069277.1| hypothetical protein AF0441 [Archaeoglobus fulgidus DSM 4304]
gi|2650186|gb|AAB90793.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 225
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 77/236 (32%), Gaps = 49/236 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---QGTKGGR 64
EIF ++QGEG + G +F RF+GCNL C +CDT T
Sbjct: 7 EIFESIQGEGFYIGVRQLFVRFAGCNLN-----------CYYCDTPKTSENCLDLTANRT 55
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
A+ + Q + TGGEP+LQ A + +E+N T+
Sbjct: 56 LKNPVSAEYV--QGRIDSSKVHSVCFTGGEPMLQ---AEFIASLSKTHPFYLESNMTLPE 110
Query: 125 PQ------------------------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
+ V + K+V P +
Sbjct: 111 KAKKLKFCDYVAGDLKVREAGLKNYDEVFQKTVKCFKVLRNTRRRKTFCKIVLPDKFDAD 170
Query: 161 ENYIGFDFER-----FSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
E + F LQP+ G +E+ L R+ Q HK++G+R
Sbjct: 171 EVLNSAYEIKNYVFGFVLQPVFGSRVEKILKLQ-KRMIDFADTRVIPQVHKYLGVR 225
>gi|312278215|gb|ADQ62872.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
thermophilus ND03]
Length = 238
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 79/240 (32%), Gaps = 50/240 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ + ++ Y L+GG P L L+ L R +AVET
Sbjct: 57 PTRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---- 173
G+ + ID + +SPK + L + Q++ + F+ L
Sbjct: 112 GSRWQEWLREIDQVTLSPKPPSSKMEVNMETLDFIVSQLDPDKLTFKVPVFDDADLAFAK 171
Query: 174 ------QP-----MDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHKFI 208
QP G + + + R+ Q H +
Sbjct: 172 MIQERYQPDVMFLSAGNPEPKAEGNIVQHQLDRLKELWETIAADDSWRNVRVLPQLHTLL 231
>gi|322516971|ref|ZP_08069861.1| ExsD protein [Streptococcus vestibularis ATCC 49124]
gi|322124454|gb|EFX95949.1| ExsD protein [Streptococcus vestibularis ATCC 49124]
Length = 238
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 78/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ + ++ Y L+GG P L L+ L RG +AVET
Sbjct: 57 PTRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAQLVSKLKARGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQEWLKDIDQVTLSPKPPSSKMEVNMETLDFIVSQLDPDKVTFKVPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L + E + + R+ Q H
Sbjct: 172 MIQERYQPDVMFLSAGNPEPKAEGN--IVQHQLNRLKELWETVAADDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|227820048|ref|YP_002824019.1| radical SAM domain protein [Sinorhizobium fredii NGR234]
gi|227339047|gb|ACP23266.1| radical SAM domain protein [Sinorhizobium fredii NGR234]
Length = 242
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 78/241 (32%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 7 RVSEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDSAYRD 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ E + L+GG P +Q LI + G+ A+ET G+
Sbjct: 55 EWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQGSVA 114
Query: 122 IEPPQGIDWICVSPKAGCD---------------LKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK + K +K+V
Sbjct: 115 RDWFAELDMLVLSPKPPSSGLETDWEAFDACLLMARGKPQIAMKIVVFDEADYAYARTAA 174
Query: 167 DFE---RFSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP + P + + + I + +W R+ Q H
Sbjct: 175 ARHPQLPVYLQPGNHTPPPPDDHDAPIDIEGVMERMRWLVDKVIADRWFEARVLPQLHVL 234
Query: 208 I 208
I
Sbjct: 235 I 235
>gi|154175412|ref|YP_001407498.1| FO synthase subunit 2 [Campylobacter curvus 525.92]
gi|153793229|gb|EAU01215.2| FO synthase subunit 2 2 (7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase subunit 2 2) [Campylobacter curvus 525.92]
Length = 256
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 86/208 (41%), Gaps = 18/208 (8%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDTDFVGIQ 58
+ E FL++QGEG + GR+AVF RF GCNL ++ CD+ +
Sbjct: 9 LELVESFLSVQGEGAYQGRLAVFLRFFGCNLNCIGFDVKTRSNKTGEILIGCDSARAVFK 68
Query: 59 GT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113
G K RY+ D++ L++ G K VLTGGEPL+ L+Q L GF+
Sbjct: 69 GHFKSKRYSSDEILSLVKNICK-GLKTRPIVVLTGGEPLIHHKNENFINLVQNLLNLGFD 127
Query: 114 IAVETNGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ ETNGTIE + G L G K + + + F +F
Sbjct: 128 VHFETNGTIEVNFAKFPVYKKCKFALGIKLANSGVSVDKRINVKAIEAICKNAKESFYKF 187
Query: 172 SL-QPMDGPFLEENTNLAIS----YCFQ 194
L P D + L IS +C
Sbjct: 188 VLSSPGDNDLEQILQVLKISDAPVWCMA 215
>gi|36958586|gb|AAQ87054.1| ExsD protein [Sinorhizobium fredii NGR234]
Length = 245
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 78/241 (32%), Gaps = 49/241 (20%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 10 RVSEIFGPTIQGEGALIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDSAYRD 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ ++ E + L+GG P +Q LI + G+ A+ET G+
Sbjct: 58 EWRAMTTDEVWSEVTQLSGGQPVMVSLSGGNPAIQPFGALIARGHAEGYRFALETQGSVA 117
Query: 122 IEPPQGIDWICVSPKAGCD---------------LKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK + K +K+V
Sbjct: 118 RDWFAELDMLVLSPKPPSSGLETDWEAFDACLLMARGKPQIAMKIVVFDEADYAYARTAA 177
Query: 167 DFE---RFSLQPMD---GPFLEENTNLAISYCFQNPKW-------------RLSVQTHKF 207
LQP + P + + + I + +W R+ Q H
Sbjct: 178 ARHPQLPVYLQPGNHTPPPPDDHDAPIDIEGVMERMRWLVDKVIADRWFEARVLPQLHVL 237
Query: 208 I 208
I
Sbjct: 238 I 238
>gi|205373223|ref|ZP_03226027.1| radical SAM domain-containing protein [Bacillus coahuilensis m4-4]
Length = 252
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 35/221 (15%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 3 LNKFPVLEIFGPTVQGEGMVIGQKTMFIRTAGCD-----------YSCSWCDSSFTW-DG 50
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVET 118
+ + ++ E G + + ++GG P LL+ L+ + G + A+ET
Sbjct: 51 SAKEDIRLLSADEIWSELVQVGGECFNHVTISGGNPALLKHLNELLDVFHNHGIQSALET 110
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-------------- 162
G+ ID + +SPK L + ++ V+ +
Sbjct: 111 QGSRWQDWFLDIDDLTLSPKPPSSGMTTDFSILDSIIQKLLVNNKAFSLKVVIFDELDLS 170
Query: 163 -----YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ + LQ + E + N +S + W
Sbjct: 171 YATLVHKRYPQVDLYLQTGNPEITEGDDNKLLSILIERYAW 211
>gi|13474824|ref|NP_106394.1| hypothetical protein mll5796 [Mesorhizobium loti MAFF303099]
gi|14025580|dbj|BAB52180.1| mll5796 [Mesorhizobium loti MAFF303099]
Length = 245
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 10 RVSEIFGPTIQGEGVLIGLPTVFVRTGGCD-----------YRCSWCDSLHA-VDRRFRH 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG--T 121
+ + + ++ + L+GG P +Q LI + G+ A+ET G +
Sbjct: 58 DWEMMSSDAVWQKVIALSSGQPVMVSLSGGNPAIQPLGQLIDRGHGEGYRFALETQGSVS 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK P+ +
Sbjct: 118 KQWFADLDVLVLSPKPPSSEMTTDWAAFDACLEAAQDKPQTALKL 162
>gi|315645295|ref|ZP_07898420.1| radical SAM domain protein [Paenibacillus vortex V453]
gi|315279337|gb|EFU42643.1| radical SAM domain protein [Paenibacillus vortex V453]
Length = 244
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 52/204 (25%), Positives = 80/204 (39%), Gaps = 28/204 (13%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 9 PVLEIFGPTVQGEGLVIGQKTMFVRTAGCD-----------YSCSWCDSSFTW-DGSAKN 56
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
+ +E G + ++GG P L++ L+ L+ +G + +ET G+
Sbjct: 57 EIKQLSAQTIYDELNSLGGTTFEHVTISGGNPALIKNIGYLVDLLHDKGIRVGLETQGSR 116
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDFERFSLQPMDGP 179
ID + VSPK I L V +N SP E I
Sbjct: 117 WQDWMADIDDLTVSPKPPSSGMITDWDRLDGVIKNLNNSPNEICIKVVI----------- 165
Query: 180 FLEENTNLAISYCFQNPKWRLSVQ 203
F E++ AI + P RL +Q
Sbjct: 166 FDEDDLQYAIKVHKRYPHMRLVLQ 189
>gi|51244018|ref|YP_063902.1| hypothetical protein DP0166 [Desulfotalea psychrophila LSv54]
gi|50875055|emb|CAG34895.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 212
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 83/215 (38%), Gaps = 35/215 (16%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF ++QGEG GR A F R SGC + C +CDT G
Sbjct: 8 VHEIFTSIQGEGPLMGRPASFLRLSGC----------VEPLCPWCDTKQAW---GPGKTI 54
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTI 122
+V+++A + R C++TGGEP LQ + L + L G EI ET+G +
Sbjct: 55 SVEEVASRLIAL------GNRLCIITGGEPFLQWESGLNLLERLLLTEGIEIQYETSGKV 108
Query: 123 EPPQGID-WICVSPK------AGCDLKIKGGQELKLVFPQVNVSPENYI---GFDFERFS 172
P + SPK + K V + +I D +R
Sbjct: 109 LIPADCRGFKVCSPKYLANIWHYLPENSERADCFKFVAGDELKPVQEFITKHNLDQDRVW 168
Query: 173 LQPMDGPFLEENT--NLAISYCFQNPKWRLSVQTH 205
+ PM E+ T +C ++ + S + H
Sbjct: 169 IMPMGTGRDEQLTRSPKIWEFCVKH-HYNFSPRLH 202
>gi|323488449|ref|ZP_08093696.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2]
gi|323397956|gb|EGA90755.1| hypothetical protein GPDM_03875 [Planococcus donghaensis MPA1U2]
Length = 235
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 35/194 (18%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F
Sbjct: 1 MKIPVMEIFGPTVQGEGMVMGQKTMFVRTAGCD-----------YSCSWCDSKFTW---D 46
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETN 119
G Q AD+IEE G + ++GG P L L+ +++G+++AVET
Sbjct: 47 GTGTSVSKQPADIIEELIHIGGSNFSHVTISGGNPALHKGIGELVDLCHQQGWKVAVETQ 106
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELK---------------LVFPQVNVSPEN 162
+I ID I +SPK +L ++F Q + S
Sbjct: 107 ASIWQEWMPTIDDITLSPKPPSSGMKTDFAKLDLFLEKLQTANVSLKVVIFDQDDFSYAE 166
Query: 163 YIGFDFER--FSLQ 174
++ + F LQ
Sbjct: 167 FLHQRYPHVPFFLQ 180
>gi|331265893|ref|YP_004325523.1| hypothetical protein SOR_0520 [Streptococcus oralis Uo5]
gi|326682565|emb|CBZ00182.1| conserved hypothetical protein [Streptococcus oralis Uo5]
Length = 238
Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ +++ Y L+GG P L L+ L +RG +AVET
Sbjct: 57 PTRMTADEVIAALDKLGSYD-----YVTLSGGNPAILAANMAQLVTKLKERGVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------VSP 160
G+ + ID + +SPK + L + Q++ +
Sbjct: 112 GSRWQNWLKDIDQVTLSPKPPSSKMEVNFETLDFIVSQLDPDKVTFKIPVFDDADLAFAK 171
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--------------KWRLSVQTHK 206
+ + L G + T + R+ Q H
Sbjct: 172 GIQERYQPDVLFLS--AGNPEPKATGNIVQDQLNRLKELWERVATDDSWGNVRVLPQLHT 229
Query: 207 FI 208
+
Sbjct: 230 LL 231
>gi|299541811|ref|ZP_07052134.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1]
gi|298725549|gb|EFI66190.1| coenzyme PQQ synthesis-like protein [Lysinibacillus fusiformis ZC1]
Length = 242
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 78/244 (31%), Gaps = 51/244 (20%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCD-----------YSCSWCDSSFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVET 118
+ ++ E G + ++GG P L LI L + +I VET
Sbjct: 49 SGKHLIVQMTAEEIWSELKRLGGNGFSFVTISGGNPALNPNLAELIAILKENDIKIGVET 108
Query: 119 NGTIEPPQGIDW--ICVSPKAGCDLKIKGGQELKLVFPQV-------------------- 156
G+ + + +SPK L +F ++
Sbjct: 109 QGSRWQKWMYEIDELTISPKPPSSGMTTDYSVLSYIFEKLKDRNSNHHVSLKIVVFNQED 168
Query: 157 -NVSPENYIGFDFERFSLQPMDGPF-----LEENTNLAISY--CFQN-------PKWRLS 201
+ + + + + F LQ + + NL Y ++
Sbjct: 169 YDYAKQIHHRYPMIPFYLQVGNDDLTATDNSQLMMNLLDKYRALIDRVMKDEDLRDVKVL 228
Query: 202 VQTH 205
Q H
Sbjct: 229 PQLH 232
>gi|327543167|gb|EGF29602.1| radical SAM domain protein [Rhodopirellula baltica WH47]
Length = 272
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I E F++ QGEG G +VF R SGCNL +C FCDT + + +G R
Sbjct: 47 ISETFVSRQGEGELTGTESVFIRTSGCNL-----------RCWFCDTPYASWKP-EGTRQ 94
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
++ L L+ E +Y VLTGGEPL+ V LI L G + +ET GT++P
Sbjct: 95 TIEDLLQLVAE------SGVKYVVLTGGEPLIAKGIVSLIDQLRSAGNHVTIETAGTVDP 148
Query: 125 PQGIDWICVSPK 136
D + +SPK
Sbjct: 149 GARCDLLSLSPK 160
>gi|126651679|ref|ZP_01723882.1| radical SAM domain protein [Bacillus sp. B14905]
gi|126591628|gb|EAZ85734.1| radical SAM domain protein [Bacillus sp. B14905]
Length = 242
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 51/244 (20%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + EIF T+QGEG G+ +F R +GC+ C +CD+ F G
Sbjct: 1 MSKVPVIEIFGPTIQGEGMVVGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVET 118
+ ++ E G + ++GG P L ++ + A+ + +I VET
Sbjct: 49 SGKHLIVQMTAGEIWSELKRLGGHGFSFVTISGGNPALYPNLEALIAILKENDIKIGVET 108
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-------------------- 156
G+ ID + +SPK L +F ++
Sbjct: 109 QGSRWQNWMYDIDELTISPKPPSSGMTIDHSVLADIFEKLKGRNRNHNISLKIVVFNQED 168
Query: 157 -NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK--------------WRLS 201
+ + + + F F LQ + + + I+ + ++
Sbjct: 169 YDFAKQIHHRFPRIPFYLQVGNDDLTTIDNSRLINDLLEKYHALIGRVMKDDELKDVKVL 228
Query: 202 VQTH 205
Q H
Sbjct: 229 PQLH 232
>gi|291533826|emb|CBL06939.1| Organic radical activating enzymes [Megamonas hypermegale ART12/1]
Length = 249
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/254 (24%), Positives = 97/254 (38%), Gaps = 64/254 (25%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-------- 57
+ EIF ++QGEG + G +F R GCN C +CDTD +
Sbjct: 8 VSEIFSSIQGEGKYVGCRQLFIRLIGCN-----------MDCPYCDTDKLAHSNLVPCVL 56
Query: 58 ---QGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR 110
+G +G N L D++ ++ +TGGEPLL + L + L
Sbjct: 57 EKCEGYEGDLELKNPLDLNDIMPYINYRLQQPHHSISITGGEPLLYPQIILELAKNLKPL 116
Query: 111 GFEIAVETNGT-----IEPPQGIDWICVSPKAGCDL---KIKGGQEL------KLVFPQV 156
+ +ETNGT + ID I + K D+ + +E K V+ ++
Sbjct: 117 SIPLFLETNGTLVKQLAQVIDEIDIISMDMKLPSDIGKAYWQEHEEFLKLASKKDVYVKI 176
Query: 157 NVSPENYIGFDFER-------------FSLQPMD--GPFLEENTNLAISY------CFQN 195
VS E+ + DFE+ LQP+ G E + + +N
Sbjct: 177 VVSNESTVE-DFEKALSIIKNIDENILLVLQPITPLGGLHEAPPEKMLKWQTRAMQVLKN 235
Query: 196 PKWRLSVQTHKFIG 209
R+ QTHK +
Sbjct: 236 --VRVIPQTHKMMN 247
>gi|297617391|ref|YP_003702550.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
gi|297145228|gb|ADI01985.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
Length = 243
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/255 (24%), Positives = 95/255 (37%), Gaps = 62/255 (24%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK Y + EI ++QGEG AG +F RF GCNL +C +CDT +
Sbjct: 1 MKAY-LSEITESIQGEGTLAGSRQIFLRFCGCNL-----------RCPYCDTVGSLSKTP 48
Query: 61 KGGRY-------------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA- 106
+ N ++D+++ T + R+ LTGGEPLL D A
Sbjct: 49 SCKIFLKPGSKNDFREYANPLSISDVVKA---TANFDTRWVSLTGGEPLLWADYLKRLAP 105
Query: 107 -LNKRGFEIAVETNGT-----IEPPQGIDWICVSPKAGCD------LKIKGGQEL---KL 151
L +G+ + +ETNGT ++ + I + K K EL +
Sbjct: 106 ILVSKGYRMLLETNGTLVENLVDILEFTAVISMDFKLPSAIGIDLFPVHKRFLELAACRP 165
Query: 152 VFPQVNVSP-----------ENYIGFDFE-RFSLQPMDGPFLEENTN------LAISYCF 193
V+ +V V+P G D LQP+ + L +
Sbjct: 166 VYVKVVVTPSTEPWEIGEVARIIAGVDATIPLVLQPVSLVTSQVAVQAEKLFDLQLDALK 225
Query: 194 QNPKWRLSVQTHKFI 208
R+ Q HK++
Sbjct: 226 HLEDVRVIPQIHKYL 240
>gi|55820876|ref|YP_139318.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
LMG 18311]
gi|55822792|ref|YP_141233.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
CNRZ1066]
gi|116627685|ref|YP_820304.1| putative coenzyme PQQ synthesis protein [Streptococcus thermophilus
LMD-9]
gi|55736861|gb|AAV60503.1| hypothetical protein, coenzyme PQQ synthesis homologue
[Streptococcus thermophilus LMG 18311]
gi|55738777|gb|AAV62418.1| hypothetical protein, coenzyme PQQ synthesis homologue
[Streptococcus thermophilus CNRZ1066]
gi|116100962|gb|ABJ66108.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
thermophilus LMD-9]
Length = 238
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 77/240 (32%), Gaps = 50/240 (20%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R +GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTAGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETN 119
R D++ + ++ Y L+GG P L L+ L R +AVET
Sbjct: 57 PTRMTADEVIEALDALGTYD-----YVTLSGGNPALLAANMAELVSKLKARDVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI--GFDFERFSLQP 175
G+ + ID + +SPK + L + Q++ + FD +
Sbjct: 112 GSRWQEWLREIDQVTLSPKPPSSKMEVNMETLDFIVSQLDPDKLTFKVPVFDDADLAFAK 171
Query: 176 MDGPFLEENTNL-------------AISYCFQNP--------------KWRLSVQTHKFI 208
M + + + R+ Q H +
Sbjct: 172 MIQKRYQPDVMFLSAGNPEPKAEGNIVQNQLDRLKELWETVAADDSWGNVRVLPQLHTLL 231
>gi|172058910|ref|YP_001815370.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Exiguobacterium sibiricum 255-15]
gi|171991431|gb|ACB62353.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Exiguobacterium sibiricum 255-15]
Length = 238
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 80/235 (34%), Gaps = 51/235 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 11 PVLEIFGPTFQGEGRSIGQKTMFVRTGGCD-----------YSCAWCDSAFTWDGSEKPD 59
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
D++ ++ G + ++GG PLL L+ AL RG ++VET G+
Sbjct: 60 LLTADEILAQLDALGSYG-----HVTISGGNPLLHASIGTLVDALKSRGITMSVETQGSY 114
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVF-----------------PQVNVSPENY 163
I+ + +SPK L + F ++ +
Sbjct: 115 WQNWVLDIEDVTISPKPPSSGMTVDYDRLDVFFKRLPEQQRAVKIVIFDEADLDFAAAIS 174
Query: 164 IGFDFERFSLQPMDGPFLEENTNLA------ISYCFQN-------PKWRLSVQTH 205
+ + L + EE T +A + ++ R+ Q H
Sbjct: 175 DRYALKTLYLSLGNPDPAEEGT-IAPRMLSDLKTLWERVAADERFNHARVLPQLH 228
>gi|311067888|ref|YP_003972811.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942]
gi|310868405|gb|ADP31880.1| queuosine biosynthesis enzyme [Bacillus atrophaeus 1942]
Length = 243
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 16/159 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 6 PVLEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCSWCDSAFTW-DGSAKK 53
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG-- 120
D+ E G + ++GG P LL+ I L ++ A+ET G
Sbjct: 54 DIRWMTAEDIYSELKEIGGDAFSHVTISGGNPALLKQLDSFITLLKEQNIRTALETQGTV 113
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
E ID + +SPK ++L + +
Sbjct: 114 YQEWFTLIDDLTISPKPPSSGMTTDFKKLDHILTSLKDE 152
>gi|322383448|ref|ZP_08057228.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321152249|gb|EFX45075.1| queuosine biosynthesis enzyme-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 240
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 76/219 (34%), Gaps = 40/219 (18%)
Query: 8 EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
EIF T+QGEG G+ +F R +GC+ +C +CD+ F G+ +
Sbjct: 3 EIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YRCSWCDSSFTW-DGSGKDQIR 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE-- 123
+ D++EE G K + ++GG P LL L+ L +G A+ET G+
Sbjct: 51 MLSPEDIVEELKRLGGKRFSHVTISGGNPVLLSQMGKLVSLLQSQGIRTAIETQGSKWQD 110
Query: 124 PPQGIDWICVSPKAG---------------------CDLKIKGGQELKLVFPQV---NVS 159
+D + +SPK LK+V +
Sbjct: 111 WLLAVDDVTLSPKPPSSGMTTDWGMLDKIAEKLRGRMQSHPMQRVSLKVVVFDDIDFQYA 170
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ + LQ + + + +W
Sbjct: 171 KRVHQRYPLVPMYLQVGNPDIYTADNAKLLEQLLDRYEW 209
>gi|310639673|ref|YP_003944431.1| coenzyme pqq synthesis-like protein [Paenibacillus polymyxa SC2]
gi|309244623|gb|ADO54190.1| Coenzyme PQQ synthesis-like protein [Paenibacillus polymyxa SC2]
Length = 237
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 87/243 (35%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M + E+F T+QGEG G +F R GC+ +C +CD+ F G
Sbjct: 1 MSKLPVIELFGPTIQGEGSVIGLKTMFVRLYGCD-----------YKCSWCDSAFTW-DG 48
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117
+ ++I++ G Y ++GG P L LI L+KR +I VE
Sbjct: 49 SSKSSIQRLTSLEIIDKLNSIGLDGCTYVTISGGNPALYNEPLYDLISELHKRSKKIIVE 108
Query: 118 TNGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-----------------V 158
T G+I +D + +SPK L + L+ +F +
Sbjct: 109 TQGSIWKDWFNDVDILTISPKPPSSLMTTDWKVLRFIFANLQHSKVSLKVVIFDETDYLF 168
Query: 159 SPENYIGFDFERFSLQP----------MDGPFLEENTNLAISYCFQNPK---WRLSVQTH 205
+ + + F LQ + G L + + +P+ R+ Q H
Sbjct: 169 AKKIQVLFPDIPLYLQVGNAEVTRSECIAGQLLNK-LEWLFNLVINDPELQTARVLPQLH 227
Query: 206 KFI 208
I
Sbjct: 228 TLI 230
>gi|297584920|ref|YP_003700700.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus selenitireducens MLS10]
gi|297143377|gb|ADI00135.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus selenitireducens MLS10]
Length = 243
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/224 (20%), Positives = 78/224 (34%), Gaps = 38/224 (16%)
Query: 1 MK-LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M + EIF T+QGEG AGR +F R +GC+ C +CD+ F
Sbjct: 1 MTETIPVLEIFGPTIQGEGMVAGRKTMFVRTAGCD-----------YACSWCDSAFTW-D 48
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVE 117
G+ + + E + ++GG P LL+ I L ++ ++A+E
Sbjct: 49 GSAKDEIVQMNKDAIWQALNEEAEGLFSHVTISGGNPALLKNLGSFITLLKEKAIDVALE 108
Query: 118 TNGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-----------VNVSPENYI 164
T G++ ID + +SPK L + + + V +
Sbjct: 109 TQGSVWQDWFTTIDDLTISPKPPSSRMETDFGVLDDIMTRLREAGRSSQVSLKVVIFDEE 168
Query: 165 GFDFER----------FSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ R F LQ + + + + +W
Sbjct: 169 DLAYARRVKTRYPDVPFYLQVGNDDTVTDEDKTLRDHLMDRYEW 212
>gi|308067859|ref|YP_003869464.1| Organic radical activating enzyme [Paenibacillus polymyxa E681]
gi|305857138|gb|ADM68926.1| Organic radical activating enzyme [Paenibacillus polymyxa E681]
Length = 287
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E+F T+QGEG GR +F R +GC+ C +CD+ F G+
Sbjct: 23 PVLEVFGPTVQGEGMVIGRKTMFVRTAGCD-----------YHCSWCDSAFTW-DGSAKD 70
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
+ D+ +E G + + L+GG P LL LI L +G AVET G+
Sbjct: 71 QIRRLSATDIWQELKAIGGERFSHVTLSGGNPALLPQLGELITLLRSQGIATAVETQGSR 130
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
ID + +SPK L + ++
Sbjct: 131 WQEWLYDIDEVTLSPKPPSSGMTTNWGVLDDIVARL 166
>gi|217033120|ref|ZP_03438583.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128]
gi|298736112|ref|YP_003728637.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8]
gi|216945163|gb|EEC23856.1| hypothetical protein HPB128_8g11 [Helicobacter pylori B128]
gi|298355301|emb|CBI66173.1| 6-pyruvoyltetrahydropterin 2'-reductase [Helicobacter pylori B8]
Length = 251
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/211 (21%), Positives = 78/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS---AQCRFCDTDFVGI- 57
+ E F +LQGEG + G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTPFNDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T + L + +E + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNDPKPLIERLEGLTP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYRKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSVHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + T I QN RLS+
Sbjct: 179 VL------ESQNATQSIIE--IQNLLKRLSL 201
>gi|313683431|ref|YP_004061169.1| radical sam domain protein [Sulfuricurvum kujiense DSM 16994]
gi|313156291|gb|ADR34969.1| Radical SAM domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 252
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 40/233 (17%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA----QCRFCDTDFVGI- 57
+ + E F ++QGEG + G ++F RF GCNL R SA + CDT +
Sbjct: 1 MLYLVEHFYSVQGEGKYTGVPSLFFRFGGCNLKCEGFGCRESAPDGSEVLGCDTVYAVDR 60
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113
+G +++L LI VLTGGEPL+ + P I+ L G
Sbjct: 61 KGFGELWMEIEELQSLIWIMNGYRLPPHVDVVLTGGEPLIYANEPIFVEFIEYLIAHGHR 120
Query: 114 IAVETNGTIEPPQGID----------WICVSPKAGCDLKIKGGQELKLVFPQVNVS---- 159
+ ETN TI P + +S K + + S
Sbjct: 121 VTFETNATIAPDFKRYPFYAQATYALSVKLSNSGEPLEKRVKPEAYGTIIAHAKESFFKF 180
Query: 160 ---------------PENYIGFDFERFSLQPMDGPF--LEENTNLAISYCFQN 195
E + P+ G +E N I +C +
Sbjct: 181 TVDEPSLVSHIESEIDEIIAPHPYTPVYCMPLGGDKAHIEANCEAVIEFCKRR 233
>gi|317178717|dbj|BAJ56505.1| hypothetical protein HPF30_0408 [Helicobacter pylori F30]
Length = 251
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 15/205 (7%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ---CRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDETLTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T + L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYHEPKSLIERLEDLAP--NYKNFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNP 196
L + ++ + Q P
Sbjct: 179 VL---ESKNAAQSIAEIQNLLKQLP 200
>gi|296109842|ref|YP_003616791.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
gi|295434656|gb|ADG13827.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
Length = 234
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 83/240 (34%), Gaps = 43/240 (17%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I EIF ++ GEG + GR +F RF CNL +R + + R V
Sbjct: 2 ITEIFSSIMGEGKYIGRRYIFIRFPKCNLNCIYCDERKNYKNR----VEVEPGSGVFEER 57
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
+ + D+++E + TGGEPLL L + L K+GF +E+NGT+
Sbjct: 58 EIRDVKDIVKEVERLKTDDLFAISFTGGEPLLFDKLDELNKLLKKKGFRTHLESNGTLPE 117
Query: 125 ---PQGIDWICVSPKAGCDLKIKGGQE----------------LKLVFPQVNVSPE-NYI 164
I I + K + + K+V N E +
Sbjct: 118 RLVFTDIGSIDIKLKGHIPNYKEVYNKELESIKILYENGVDVYAKVVILSSNTVEEIEKV 177
Query: 165 GFDFERF-----SLQP---------MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
D LQP + + + A Y ++Q HK++ I
Sbjct: 178 AKDLSEIGSILLCLQPVTPTKDIKGVSKKVIFKMMEKAGKYV----DVMTTIQMHKYMKI 233
>gi|86149669|ref|ZP_01067899.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597314|ref|ZP_01100549.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|218561841|ref|YP_002343620.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85839937|gb|EAQ57196.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190375|gb|EAQ94349.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359547|emb|CAL34331.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|315927801|gb|EFV07127.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315928774|gb|EFV08047.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
305]
Length = 247
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN + + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|57237168|ref|YP_178180.1| radical SAM domain-containing protein [Campylobacter jejuni RM1221]
gi|57165972|gb|AAW34751.1| radical SAM domain protein [Campylobacter jejuni RM1221]
gi|284925453|gb|ADC27805.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315057600|gb|ADT71929.1| Queuosine Biosynthesis QueE Radical SAM [Campylobacter jejuni
subsp. jejuni S3]
Length = 247
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN + + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEINFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|86136125|ref|ZP_01054704.1| radical SAM domain protein [Roseobacter sp. MED193]
gi|85826999|gb|EAQ47195.1| radical SAM domain protein [Roseobacter sp. MED193]
Length = 206
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 15/140 (10%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
I EIF T+QGEG G VF R GC+ +C +CD+ +
Sbjct: 1 MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDF-----------RCNWCDSLHA-VDSE 48
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + + L+GG P +Q PLI G+ A ET G
Sbjct: 49 YRHSWAPMTAEAVWDRVRQLSGDRPLTVSLSGGNPAIQDFGPLIAMGRAAGYRFACETQG 108
Query: 121 T--IEPPQGIDWICVSPKAG 138
+ +D + +SPK
Sbjct: 109 SIARPWFADLDTLVLSPKPP 128
>gi|283955607|ref|ZP_06373100.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter
jejuni subsp. jejuni 1336]
gi|283792832|gb|EFC31608.1| LOW QUALITY PROTEIN: radical SAM domain protein [Campylobacter
jejuni subsp. jejuni 1336]
Length = 247
Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 86/226 (38%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN ++S + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNNKTLIGCDTMRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYETLNANELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLNAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|124008813|ref|ZP_01693501.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina
ATCC 23134]
gi|123985604|gb|EAY25489.1| coenzyme PQQ synthesis protein, conjectural [Microscilla marina
ATCC 23134]
Length = 250
Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 59/206 (28%), Positives = 78/206 (37%), Gaps = 40/206 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----------- 56
EIF T+QGEG G+ VF R S CNL C +CDTD+
Sbjct: 11 EIFYTIQGEGKSLGKPTVFIRSSLCNL-----------HCIWCDTDYTWNWKNTPYPHVF 59
Query: 57 IQGTKGGRYN-VDQLADLIEEQWI--TGEKEGRYCVLTGGEPLL----QVDVPLIQALNK 109
Q +Y+ +Q+ +L Q I + VLTGGEPLL V++
Sbjct: 60 DQTPGYEKYDKKEQIVELSTAQIIEEIAPYACKNLVLTGGEPLLQQKAWVELMAQLRKKD 119
Query: 110 RGFEIAVETNGTIEPPQGI----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
G+ VETNGT+ P D VSPK +E + SP+ +
Sbjct: 120 AGYWFEVETNGTLLPSSEFDALIDQYNVSPKLENSNNSMKIREKPEAYAFFRQSPKAWFK 179
Query: 166 FDFERFSLQPMDGPFLEENTNLAISY 191
F + LEE L Y
Sbjct: 180 FVIAQ-------QADLEEVLELIKKY 198
>gi|294851212|ref|ZP_06791885.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp.
NVSL 07-0026]
gi|294819801|gb|EFG36800.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Brucella sp.
NVSL 07-0026]
Length = 280
Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 45 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 92
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 93 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 152
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 153 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 197
>gi|325969441|ref|YP_004245633.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
gi|323708644|gb|ADY02131.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 218
Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 22/140 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ E+F + QGEG HAG AVF R + CNL +C +CDT + + G G
Sbjct: 3 VVEVFRSWQGEGPHAGEEAVFLRLARCNL-----------RCVWCDTKYSWLGGVSMG-- 49
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+ + G E ++ V+TGGEPLL L+ + RG+ + VETNGT+
Sbjct: 50 ----IDAVFRRLIEVGGDEIKHLVITGGEPLLWWRELRQLLIIVKGRGWFVEVETNGTLR 105
Query: 124 PPQGIDWI---CVSPKAGCD 140
P + +D++ VS K
Sbjct: 106 PGELLDYVDEFNVSSKLSNS 125
>gi|256059945|ref|ZP_05450130.1| Radical SAM domain protein [Brucella neotomae 5K33]
gi|261323917|ref|ZP_05963114.1| radical SAM domain-containing protein [Brucella neotomae 5K33]
gi|261299897|gb|EEY03394.1| radical SAM domain-containing protein [Brucella neotomae 5K33]
Length = 251
Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 16 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 64 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 124 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPHTVLKF 168
>gi|222824418|ref|YP_002575992.1| radical SAM domain protein [Campylobacter lari RM2100]
gi|222539639|gb|ACM64740.1| radical SAM domain protein [Campylobacter lari RM2100]
Length = 249
Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 19/204 (9%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG ++G +A+F RF+GCN G ++++ S CDT
Sbjct: 3 VVETFLSIQGEGKYSGNLAIFVRFAGCNFNCVGFGVKKEKDSKILLGCDTIRAVFTKEFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y L +E V+TGGEPLL I L + F + ET
Sbjct: 63 TCYKTYTSVKLFDEVLKLANSRKAIVVITGGEPLLNYQNKDFLCFINLLLENDFMVHFET 122
Query: 119 NGTIE--------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
N +IE + + V K K E K + + + +++ F ++
Sbjct: 123 NASIEIDFEKYPLYKKCYFALGVKLSNSGVKKEKRINE-KALKAFKHYAKDSFYKFVLDK 181
Query: 171 FSLQPMDGPFLEENTNLAISYCFQ 194
LQ + L E N + C
Sbjct: 182 DFLQ--ESKALNE-INEILQICEN 202
>gi|78043751|ref|YP_359801.1| radical SAM domain-containing protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995866|gb|ABB14765.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 238
Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 91/249 (36%), Gaps = 63/249 (25%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------FVGI 57
I EIF +LQGEG +AG +F RFSGCNL C +CDT+ F
Sbjct: 4 IVEIFPSLQGEGLYAGVSTLFIRFSGCNLN-----------CSYCDTEDAREKRERFTVT 52
Query: 58 QGTKG-----GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110
+ ++L +++ E + LTGGEPLL + L+
Sbjct: 53 KEDGSLLEFLNPVTPEKLVEILRENYDFTYFPQ--LALTGGEPLLHASFLKEFLPKLSYP 110
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL--------------KLVFPQV 156
G E+ +ETNGT+ V + E K V+ ++
Sbjct: 111 G-EVLLETNGTLPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEASRKKVYVKM 169
Query: 157 NVSPE----------NYIGFDFERF--SLQPM-----DGPFLEENTNLAISYCFQNPKWR 199
+SPE N I + LQP+ FL + +A+ + R
Sbjct: 170 VISPEVQDSEFNGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLWD---VR 226
Query: 200 LSVQTHKFI 208
+ Q HK +
Sbjct: 227 IIPQVHKLL 235
>gi|254779534|ref|YP_003057640.1| hypothetical protein HELPY_0917 [Helicobacter pylori B38]
gi|254001446|emb|CAX29441.1| Conserved hypothetical protein [Helicobacter pylori B38]
Length = 251
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T + L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNDPKPLIERLEDLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYRKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEKESKRIHLKALQNILNNAKSVHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + I QN RLS+
Sbjct: 179 VL------ESQNAAQSIIE--IQNLLKRLSL 201
>gi|157414477|ref|YP_001481733.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
81116]
gi|157385441|gb|ABV51756.1| hypothetical protein C8J_0157 [Campylobacter jejuni subsp. jejuni
81116]
gi|307747120|gb|ADN90390.1| Radical SAM domain protein [Campylobacter jejuni subsp. jejuni M1]
gi|315931973|gb|EFV10926.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
327]
Length = 247
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN + + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|305432704|ref|ZP_07401864.1| radical SAM domain protein [Campylobacter coli JV20]
gi|304444213|gb|EFM36866.1| radical SAM domain protein [Campylobacter coli JV20]
Length = 247
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 12/201 (5%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG ++G++A+F RF+GCN G + + + CDT
Sbjct: 3 LVESFLSIQGEGKYSGKLAIFMRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFN 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y + ++L + + V+TGGEPL+ + P IQAL K FE+ E+
Sbjct: 63 EEYEILNASELFKRVLDLKKDFNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFES 122
Query: 119 NGTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
NG+IE + + L+ G + K + ++Y F +F L
Sbjct: 123 NGSIELDFEKYPFYKECVFALSVKLQNSGMGKEKRLNFNALKGFKHYAKDSFYKFVL--- 179
Query: 177 DGPFLEENTNLAISYCFQNPK 197
+ LE + + + P
Sbjct: 180 NSSQLESLSLEILEILEKAPN 200
>gi|148926329|ref|ZP_01810013.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145844721|gb|EDK21826.1| hypothetical protein Cj8486_0156c [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 247
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN + + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYKTLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|291279399|ref|YP_003496234.1| hypothetical protein DEFDS_1008 [Deferribacter desulfuricans SSM1]
gi|290754101|dbj|BAI80478.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 231
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 84/243 (34%), Gaps = 48/243 (19%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--- 57
M +KEIF ++QGEG + G +F RF+GCN C CDT++
Sbjct: 1 MSKAFVKEIFKSVQGEGKYVGARQLFIRFAGCN-----------INCVGCDTNYTVDRYF 49
Query: 58 ---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGF 112
D L +L+ + LTGGEPL+ +Q L G
Sbjct: 50 LCCDKKYENPVTPDNLFNLVVNNFDLNLFHS--VSLTGGEPLIYCDFLKLFLQYLKNAGV 107
Query: 113 EIAVETNGTI-----EPPQGIDWICVSPKA----GCDLKIKGGQELKLV----------- 152
+ET+G I E +D I V K G + G +LK +
Sbjct: 108 RTFLETSGLIVDSILELEDYLDIISVDLKLKEVFGVEFNRDGIIKLKDINEKVYFKIVVG 167
Query: 153 ----FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR--LSVQTHK 206
++ + G E + +D F + + C+ + Q HK
Sbjct: 168 ENLPLEKIENTIHLIKGIGVEELYIHFIDNKFNYSLLDKILDLCYYH-NVMAYFIPQVHK 226
Query: 207 FIG 209
IG
Sbjct: 227 LIG 229
>gi|228995355|ref|ZP_04155040.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus pseudomycoides DSM 12442]
gi|228764397|gb|EEM13260.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus pseudomycoides DSM 12442]
Length = 232
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 49/235 (20%)
Query: 7 KEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ +
Sbjct: 1 MEIFGPTIQGEGMVIGQKTMFIRTAGCD-----------YSCSWCDSAFTW-DGSTKEQI 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE- 123
++ E G + + ++GG P+L ++ + + + G A+ET G+
Sbjct: 49 RQMAPEEIWNELVGIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQ 108
Query: 124 -PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------- 170
ID + +SPK L V ++ + + +DFE
Sbjct: 109 EWLLQIDEVTISPKPPSSKMKTDFTMLDSVIHKLERKDFSLKVVVFEDYDFEYAVKVHKR 168
Query: 171 -----FSLQPMDG---------------PFLEENTNLAISYCFQNPKWRLSVQTH 205
F LQ + E A+ C + ++ Q H
Sbjct: 169 YPQVPFFLQVGNDDTKTVDDAALIKNLLQKYERLIEKAVQ-CKEMNDAKVLPQLH 222
>gi|14521605|ref|NP_127081.1| coenzyme PQQ synthesis protein III related [Pyrococcus abyssi GE5]
gi|5458824|emb|CAB50311.1| Radical SAM family protein [Pyrococcus abyssi GE5]
Length = 254
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 69/259 (26%)
Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
EIF + QGEGG GR +F RF+GC+L +C +CD+ I +K
Sbjct: 8 EIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDL-----------RCSWCDSK-AFIDASKV 55
Query: 63 GRY---------------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQ 105
R+ N L ++I+ + TGGEP LQ+ L++
Sbjct: 56 KRWRIEVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMK 115
Query: 106 ALNKRGFEIAVETNGTIEPP----------QGIDWICVSPKAGCDLKIKGGQEL------ 149
L + GF+ +ET+G +D S KA D + +E+
Sbjct: 116 ELKEVGFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRIL 175
Query: 150 ---------KLVFPQ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY----- 191
KLV Q NV + ++QP + + L + Y
Sbjct: 176 KGAGARVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPREPIDIP-MQKLMLLYNEASR 234
Query: 192 CFQNPKWRLSVQTHKFIGI 210
LS Q HK++ +
Sbjct: 235 ILGRKNVGLSFQVHKYLKV 253
>gi|153951290|ref|YP_001397418.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938736|gb|ABS43477.1| radical SAM domain protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 247
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN + + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYETLSTNELLKRVIKLKQGFNPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|304315357|ref|YP_003850504.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis
str. Marburg]
gi|302588816|gb|ADL59191.1| predicted glycyl radical-activating enzyme [Methanothermobacter
marburgensis str. Marburg]
Length = 244
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E+F ++QGEG G+ +F RF+GCNL C +CDT + G
Sbjct: 4 PIMEVFSSIQGEGLLVGKRQIFIRFAGCNLN-----------CSYCDTP-ESRDPSCGEE 51
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
+ DQL ++E +TGGEPLL D + + L + +ETNG++
Sbjct: 52 LSADQLLGMVENLVTPDFHS---LSITGGEPLLYPDF-IREFLEDSPWSALLETNGSLPA 107
Query: 125 PQ 126
Sbjct: 108 SA 109
>gi|118580205|ref|YP_901455.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
2379]
gi|118502915|gb|ABK99397.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
Length = 249
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 83/255 (32%), Gaps = 59/255 (23%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
I EIF ++QGEG AGR +F R + CNL +C +CDT F
Sbjct: 5 LPIAEIFSSIQGEGYLAGRRQIFIRLTRCNL-----------ECSYCDTGFGEGESCLVE 53
Query: 55 VGIQGTKGGRYN----VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
+ +D+L D++ + LTGGEPLL + R
Sbjct: 54 NSPGSNVFEHFPRAVGLDRLMDILNAWTWALPRAHHSISLTGGEPLLFAPLLSDWLPRLR 113
Query: 111 GF-EIAVETNGTIEPPQGIDW-----ICVSPKAGCDLKI----------------KGGQE 148
G + +ETNGT+ G + + K
Sbjct: 114 GILPVHLETNGTLPIELGRIIRLVDYVSMDMKLPSTAACGGELWDTHRRFLETARGKNVS 173
Query: 149 LKLVFPQVNVSPENYIGFDF-------ERFSLQPMDGPFL------EENTNLAISYCFQN 195
+K+V + + + E LQP+ P +L +
Sbjct: 174 VKIVVGEQSDAAEIEQVCRIIAQIRPDTPLFLQPLSLPDSHCGISAAHLLHLQALAAARL 233
Query: 196 PKWRLSVQTHKFIGI 210
R+ Q HK +G+
Sbjct: 234 SDVRVIPQMHKLMGV 248
>gi|145554191|gb|ABP68894.1| unknown [Bacillus sp. PL-12]
Length = 258
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 51/242 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ EIF T+QGEG G+ +F R +GC+ C +CD+ F G+
Sbjct: 21 PVMEIFGPTIQGEGMVIGQKTMFVRTAGCD-----------YSCAWCDSSFTW-DGSGKD 68
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
++ E G Y ++GG P L++ L++ L + I +ET G+
Sbjct: 69 LVRQMDADEVWRELKALGGDGFTYVTISGGNPALIKNLSGLVELLKENQISICLETQGSK 128
Query: 123 E--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV----------------NVSPENYI 164
ID + +SPK + L + + + +
Sbjct: 129 WQDWFLEIDALTLSPKPPSSGMETDFEVLDQIVECLKENGSLKNASLKIVVFDAVDYEFA 188
Query: 165 GFDFER-----FSLQPMDGPFLEENT-----------NLAISYCF---QNPKWRLSVQTH 205
+R F LQ + E+ I+ + R+ Q H
Sbjct: 189 KLVHQRYPDLAFFLQVGNDDLATEDQVNLMSSLVDKYEWLINKVMCDVEMNNVRVLPQLH 248
Query: 206 KF 207
+
Sbjct: 249 VY 250
>gi|86151465|ref|ZP_01069680.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123765|ref|YP_004065769.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841812|gb|EAQ59059.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017487|gb|ADT65580.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 247
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN + + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSLLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|254700612|ref|ZP_05162440.1| Radical SAM domain protein [Brucella suis bv. 5 str. 513]
gi|261751121|ref|ZP_05994830.1| radical SAM domain-containing protein [Brucella suis bv. 5 str.
513]
gi|261740874|gb|EEY28800.1| radical SAM domain-containing protein [Brucella suis bv. 5 str.
513]
Length = 251
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 16 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 64 EWKPMSVEAIWHEVTTLSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 124 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168
>gi|306843411|ref|ZP_07476012.1| Radical SAM domain protein [Brucella sp. BO1]
gi|306276102|gb|EFM57802.1| Radical SAM domain protein [Brucella sp. BO1]
Length = 247
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 12 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 59
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 60 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 120 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164
>gi|256112302|ref|ZP_05453223.1| Radical SAM domain protein [Brucella melitensis bv. 3 str. Ether]
gi|265993735|ref|ZP_06106292.1| radical SAM domain-containing protein [Brucella melitensis bv. 3
str. Ether]
gi|262764716|gb|EEZ10637.1| radical SAM domain-containing protein [Brucella melitensis bv. 3
str. Ether]
Length = 251
Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 16 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 64 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 124 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168
>gi|23502822|ref|NP_698949.1| radical activating enzyme [Brucella suis 1330]
gi|62290822|ref|YP_222615.1| radical activating protein [Brucella abortus bv. 1 str. 9-941]
gi|82700734|ref|YP_415308.1| proline-rich extensin:radical SAM family protein [Brucella
melitensis biovar Abortus 2308]
gi|161619892|ref|YP_001593779.1| radical SAM domain-containing protein [Brucella canis ATCC 23365]
gi|163843996|ref|YP_001628400.1| radical SAM domain-containing protein [Brucella suis ATCC 23445]
gi|225853410|ref|YP_002733643.1| radical SAM domain-containing protein [Brucella melitensis ATCC
23457]
gi|254694602|ref|ZP_05156430.1| Radical SAM domain protein [Brucella abortus bv. 3 str. Tulya]
gi|254696227|ref|ZP_05158055.1| Radical SAM domain protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254704982|ref|ZP_05166810.1| Radical SAM domain protein [Brucella suis bv. 3 str. 686]
gi|254731145|ref|ZP_05189723.1| Radical SAM domain protein [Brucella abortus bv. 4 str. 292]
gi|256045575|ref|ZP_05448455.1| Radical SAM domain protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256158470|ref|ZP_05456368.1| Radical SAM domain protein [Brucella ceti M490/95/1]
gi|256253889|ref|ZP_05459425.1| Radical SAM domain protein [Brucella ceti B1/94]
gi|256263110|ref|ZP_05465642.1| radical SAM domain-containing protein [Brucella melitensis bv. 2
str. 63/9]
gi|256370376|ref|YP_003107887.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915]
gi|260169391|ref|ZP_05756202.1| queuosine biosynthesis protein QueE [Brucella sp. F5/99]
gi|260546089|ref|ZP_05821829.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038]
gi|260562886|ref|ZP_05833372.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
str. 16M]
gi|260567544|ref|ZP_05838014.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40]
gi|260758876|ref|ZP_05871224.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260760600|ref|ZP_05872943.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|261214926|ref|ZP_05929207.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
gi|261221026|ref|ZP_05935307.1| radical SAM domain-containing protein [Brucella ceti B1/94]
gi|261755683|ref|ZP_05999392.1| radical SAM domain-containing protein [Brucella suis bv. 3 str.
686]
gi|261758913|ref|ZP_06002622.1| radical SAM domain-containing protein [Brucella sp. F5/99]
gi|265991999|ref|ZP_06104556.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
str. Rev.1]
gi|265996986|ref|ZP_06109543.1| radical SAM domain-containing protein [Brucella ceti M490/95/1]
gi|23348846|gb|AAN30864.1| radical activating enzyme, putative [Brucella suis 1330]
gi|62196954|gb|AAX75254.1| hypothetical radical activating enzyme [Brucella abortus bv. 1 str.
9-941]
gi|82616835|emb|CAJ11931.1| Proline-rich extensin:Radical SAM [Brucella melitensis biovar
Abortus 2308]
gi|161336703|gb|ABX63008.1| Radical SAM domain protein [Brucella canis ATCC 23365]
gi|163674719|gb|ABY38830.1| Radical SAM domain protein [Brucella suis ATCC 23445]
gi|225641775|gb|ACO01689.1| Radical SAM domain protein [Brucella melitensis ATCC 23457]
gi|256000539|gb|ACU48938.1| queuosine biosynthesis protein QueE [Brucella microti CCM 4915]
gi|260096196|gb|EEW80072.1| radical SAM domain-containing protein [Brucella abortus NCTC 8038]
gi|260152902|gb|EEW87994.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
str. 16M]
gi|260157062|gb|EEW92142.1| radical SAM domain-containing protein [Brucella suis bv. 4 str. 40]
gi|260669194|gb|EEX56134.1| radical SAM domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260671032|gb|EEX57853.1| radical SAM domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260916533|gb|EEX83394.1| radical SAM domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
gi|260919610|gb|EEX86263.1| radical SAM domain-containing protein [Brucella ceti B1/94]
gi|261738897|gb|EEY26893.1| radical SAM domain-containing protein [Brucella sp. F5/99]
gi|261745436|gb|EEY33362.1| radical SAM domain-containing protein [Brucella suis bv. 3 str.
686]
gi|262551454|gb|EEZ07444.1| radical SAM domain-containing protein [Brucella ceti M490/95/1]
gi|263003065|gb|EEZ15358.1| radical SAM domain-containing protein [Brucella melitensis bv. 1
str. Rev.1]
gi|263093011|gb|EEZ17161.1| radical SAM domain-containing protein [Brucella melitensis bv. 2
str. 63/9]
gi|326409973|gb|ADZ67038.1| radical SAM domain-containing protein [Brucella melitensis M28]
Length = 251
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 16 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 64 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 124 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168
>gi|86153735|ref|ZP_01071938.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|121613080|ref|YP_999885.1| radical SAM domain-containing protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167004851|ref|ZP_02270609.1| hypothetical protein Cjejjejuni_00920 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|85842696|gb|EAQ59908.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87250333|gb|EAQ73291.1| radical SAM domain protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 247
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG + G++A+F RF+GCN + + CDT
Sbjct: 3 LVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ESYETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENPEFIKFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGI------DWICVSPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF----- 166
NG+IE +S K +K K + N + +++ F
Sbjct: 123 NGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDAN 182
Query: 167 ---------------DFERFSLQPM--DGPFLEENTNLAISYCFQN 195
+ PM + L++N +C +N
Sbjct: 183 TLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKN 228
>gi|254713614|ref|ZP_05175425.1| Radical SAM domain protein [Brucella ceti M644/93/1]
gi|254716032|ref|ZP_05177843.1| Radical SAM domain protein [Brucella ceti M13/05/1]
gi|261217800|ref|ZP_05932081.1| radical SAM domain-containing protein [Brucella ceti M13/05/1]
gi|261321352|ref|ZP_05960549.1| radical SAM domain-containing protein [Brucella ceti M644/93/1]
gi|260922889|gb|EEX89457.1| radical SAM domain-containing protein [Brucella ceti M13/05/1]
gi|261294042|gb|EEX97538.1| radical SAM domain-containing protein [Brucella ceti M644/93/1]
Length = 243
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 8 RISEIFSPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 56 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 115
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 116 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 160
>gi|225628173|ref|ZP_03786208.1| Radical SAM domain protein [Brucella ceti str. Cudo]
gi|237816336|ref|ZP_04595329.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Brucella abortus str. 2308 A]
gi|225616998|gb|EEH14045.1| Radical SAM domain protein [Brucella ceti str. Cudo]
gi|237788403|gb|EEP62618.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Brucella abortus str. 2308 A]
gi|326539690|gb|ADZ87905.1| radical SAM domain protein [Brucella melitensis M5-90]
Length = 252
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 17 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 64
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 65 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 124
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 125 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 169
>gi|254718024|ref|ZP_05179835.1| Radical SAM domain protein [Brucella sp. 83/13]
gi|265982972|ref|ZP_06095707.1| radical SAM domain-containing protein [Brucella sp. 83/13]
gi|306839805|ref|ZP_07472606.1| Radical SAM domain protein [Brucella sp. NF 2653]
gi|264661564|gb|EEZ31825.1| radical SAM domain-containing protein [Brucella sp. 83/13]
gi|306405160|gb|EFM61438.1| Radical SAM domain protein [Brucella sp. NF 2653]
Length = 247
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 12 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 59
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 60 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIEHGKAEGYRFALETQGSVA 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 120 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164
>gi|307721837|ref|YP_003892977.1| hypothetical protein Saut_1922 [Sulfurimonas autotrophica DSM
16294]
gi|306979930|gb|ADN09965.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
16294]
Length = 252
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 90/243 (37%), Gaps = 41/243 (16%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSG----REQDRLSAQCRFCDTDFVGIQ 58
+ + E F ++QGEG + G ++F RF GCN+ +E A+ CDT + +
Sbjct: 1 MIYLVEHFYSIQGEGKYVGTPSLFFRFGGCNMKCEGFGCKETASDGAEVLGCDTVYAVNK 60
Query: 59 GTK-GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI----QALNKRGFE 113
+++ +L+ + E VLTGGEPL+ + + + L ++G +
Sbjct: 61 EHFLQNWIPINKAQELLSILSLYDLPEAVDIVLTGGEPLIYANDEIFVDFLEVLVEQGHQ 120
Query: 114 IAVETNG------TIEPPQGIDWICVSPKAGC-----------DLKIKGGQELKLVFPQV 156
I ETNG P +S K ++ K F +
Sbjct: 121 ITFETNGSLAVDFEKYPVYKECVFALSIKLSNSGEPLNKRLRGNVIYNIASNAKDAFFKF 180
Query: 157 NVSPENYIGFDFE------------RFSLQPMDG--PFLEENTNLAISYCFQNPKWRLSV 202
++ E+ E + P+ G LEENT I +C + S
Sbjct: 181 SIDKESINIALEEEIESVTIHSPQTKVYCMPVAGSKKELEENTEPLIEFCKAK-GYNFSD 239
Query: 203 QTH 205
+ H
Sbjct: 240 RLH 242
>gi|320530179|ref|ZP_08031249.1| radical SAM domain protein [Selenomonas artemidis F0399]
gi|320137612|gb|EFW29524.1| radical SAM domain protein [Selenomonas artemidis F0399]
Length = 243
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 87/252 (34%), Gaps = 65/252 (25%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF----------- 54
I EIF ++QGEG + G VF R GCNL C +CDT+
Sbjct: 5 IIEIFSSIQGEGKYVGCRQVFVRLEGCNLD-----------CTYCDTENEIGRHPTCMVE 53
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
+ +++ +A L+ + + G+ +TGGEPLL VP I+AL +R
Sbjct: 54 MPAGSHELHSYANPLSIETVAALVAQ--VAGDVPHHSLSVTGGEPLLH--VPFIRALKER 109
Query: 111 -GFEIAVETNGTIEPPQGIDWICVSPKAGC-------------------DLKIKGGQELK 150
I +ETNGT+ CVS + ++ +K
Sbjct: 110 VPLPIFLETNGTLHDALARCIDCVSYISMDIKLPGVLLHPVWDAHARFLEIARTKDVYVK 169
Query: 151 LVFPQVNVSPENYIGFDFER-------FSLQPMDG------PFLEENTNLAISYCFQN-P 196
+V E LQP+ P L + P
Sbjct: 170 VVVAAETREDEVRTAARMVAETAPDVLLILQPVTPYGGCTAPTPARLLALQ-QIALVHVP 228
Query: 197 KWRLSVQTHKFI 208
R+ QTH+ +
Sbjct: 229 DVRVIPQTHRMM 240
>gi|290580634|ref|YP_003485026.1| hypothetical protein SmuNN2025_1108 [Streptococcus mutans NN2025]
gi|254997533|dbj|BAH88134.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 238
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 81/237 (34%), Gaps = 50/237 (21%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 8 KLPVLEIFGPTFQGEGRAIGQKTMFVRTGGCD-----------YHCDWCDSAFTWDGSEK 56
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
DQ+ + +++ Y L+GG P L L++ L KR +AVET
Sbjct: 57 PTMMTSDQIIEALDKLGTYD-----YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQ 111
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------VSPENYIGFDFER 170
G+ + ID + +SPK Q L + ++ + + F +
Sbjct: 112 GSRWQEWLKAIDQVTLSPKPPSSKMKVNLQTLDFIVSNLDPQKVTYKIPIFDEADLKFAQ 171
Query: 171 ----------FSLQ-----PMDGPFLEENTNLAISYCFQNP-------KWRLSVQTH 205
L P + +N + +++ R+ Q H
Sbjct: 172 MIQGRYQPDVLYLSVGNPEPKSSGDIVQNQLKRLKKLWEHIAQDDSWGNVRVLPQLH 228
>gi|298250150|ref|ZP_06973954.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ktedonobacter racemifer DSM 44963]
gi|297548154|gb|EFH82021.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Ktedonobacter racemifer DSM 44963]
Length = 247
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 6 IKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I E+F T+QGEG G+ VF R GC+ +C+ CDT + + G
Sbjct: 9 ISELFGCTIQGEGALIGKPTVFVRTGGCD-----------YRCQRCDTLYAVL-PEHRGE 56
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT--I 122
+ ++ + L+GG P +Q L+ + G+ A+ET G+
Sbjct: 57 WQQMTTQEVFAQVRELAHNRPILVTLSGGNPAMQPLEELLDLGHTEGYTFAIETQGSIAQ 116
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQ 147
+D++ +SPKA +
Sbjct: 117 PWFAKLDYLTLSPKAPGMQNPQPTN 141
>gi|150401262|ref|YP_001325028.1| radical SAM domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013965|gb|ABR56416.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
Length = 248
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 77/250 (30%), Gaps = 51/250 (20%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR--EQDRLSAQCRFCDTDFVGIQGTKGG 63
I E+F ++ GEG GR +F RF GC L E + CR + V G
Sbjct: 2 ISEVFSSIMGEGKFIGRRYIFIRFKGCPLNCIYCDEYTKNDMPCR---VEEVSGSGIFKE 58
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
N + +LIE + TGGEPLL LN G + +E+NG
Sbjct: 59 YINTAENNNLIEIINKIKTPDLFAISFTGGEPLLYADKIKEYSDILNDLGHKTHLESNGM 118
Query: 122 IE---PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF------------ 166
I + K D ++ ++ S E
Sbjct: 119 FPDKINYFDYSSIDIKLKEHFDFNNFNSKKYDELYNNELKSIEKLYNLGSDVYGKVVIME 178
Query: 167 ------------------DFERFSLQPMDG-----PFLEENTNLAISYCFQNPKWRLSV- 202
D +QP+ ++N + C + SV
Sbjct: 179 NTTPETVEQVAKDLSDIGDDIILCIQPVSPFKDIKSPSQQNLLKIMEVCGNHLG--DSVI 236
Query: 203 ---QTHKFIG 209
Q HK++G
Sbjct: 237 CTSQIHKYLG 246
>gi|294498043|ref|YP_003561743.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus megaterium QM B1551]
gi|294347980|gb|ADE68309.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus megaterium QM B1551]
Length = 243
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 16/157 (10%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ EIF T+QGEG GR +F R +GC+ C +CD+ F G+
Sbjct: 3 NTIPVLEIFGPTIQGEGMVVGRKTMFVRTAGCD-----------YSCSWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
+ E G + + ++GG P L++ L++ L+ G + A+ET
Sbjct: 51 AKNDIRQLTAEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQ 110
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
G + ID + +SPK L L +
Sbjct: 111 GSRYQDWFLKIDDLTISPKPPSSLMKTNFSVLDDIIE 147
>gi|210135123|ref|YP_002301562.1| radical SAM domain-containing protein [Helicobacter pylori P12]
gi|210133091|gb|ACJ08082.1| radical SAM domain-containing protein [Helicobacter pylori P12]
Length = 251
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/250 (18%), Positives = 86/250 (34%), Gaps = 47/250 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
+ T + L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNDPKPLIERLEDLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYRQK 118
Query: 116 V----ETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKL 151
+ E+NG+I +S K L+ + + K
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEKESKRINLKALQNILNNAKSAHFKF 178
Query: 152 VFPQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLS 201
V N + + L P+ + L++N ++ +RLS
Sbjct: 179 VLESQNAAQSITEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKH-GFRLS 237
Query: 202 VQTHKFIGIR 211
+ H IR
Sbjct: 238 DRLH----IR 243
>gi|22298438|ref|NP_681685.1| hypothetical protein tll0895 [Thermosynechococcus elongatus BP-1]
gi|22294618|dbj|BAC08447.1| tll0895 [Thermosynechococcus elongatus BP-1]
Length = 301
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/261 (19%), Positives = 75/261 (28%), Gaps = 64/261 (24%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------ 57
+ EIF +QGEG + G +F R +GC+L +C +CD+
Sbjct: 52 LPLVEIFSAIQGEGANVGCRQIFIRLAGCDL-----------RCTYCDSAHTWFVPSHAL 100
Query: 58 -QGTKGGRY----NVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQ--VDVPLIQALN 108
+ G R+ A I E + LTGGEPLL + L
Sbjct: 101 IEKQTGDRHFQTVPNPVSAAHILEAVQRLNTPPIHDSISLTGGEPLLHAATLARFLPLLK 160
Query: 109 KR-GFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKG----------GQ 147
+ +ET G G+D S C G +
Sbjct: 161 AHSSLPLYLETGGHHPEALQLILPYLDSVGMDIKLPSVSGECHWSAHGVFLRLCDRAPVE 220
Query: 148 ELKLVFPQVNVSPENYIGF--------DFERFSLQPMDGPFLEENTN-----LAISY--- 191
V P + LQP+ T + +
Sbjct: 221 VFCKVIVSRTTDPADLDRLSALVASVNPHIPIFLQPVTPVGTGRCTPPPTPDQVLKWQGQ 280
Query: 192 CFQNP-KWRLSVQTHKFIGIR 211
R+ QTHKF+G R
Sbjct: 281 LKTRLTHVRVVPQTHKFLGQR 301
>gi|254707503|ref|ZP_05169331.1| Radical SAM domain protein [Brucella pinnipedialis M163/99/10]
gi|254708957|ref|ZP_05170768.1| Radical SAM domain protein [Brucella pinnipedialis B2/94]
gi|256030484|ref|ZP_05444098.1| Radical SAM domain protein [Brucella pinnipedialis M292/94/1]
gi|261314986|ref|ZP_05954183.1| radical SAM domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261316456|ref|ZP_05955653.1| radical SAM domain-containing protein [Brucella pinnipedialis
B2/94]
gi|265987526|ref|ZP_06100083.1| radical SAM domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|261295679|gb|EEX99175.1| radical SAM domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261304012|gb|EEY07509.1| radical SAM domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|264659723|gb|EEZ29984.1| radical SAM domain-containing protein [Brucella pinnipedialis
M292/94/1]
Length = 251
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 16 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 64 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGTLIKHGKAEGYRFALETQGSVA 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 124 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168
>gi|291547693|emb|CBL20801.1| Organic radical activating enzymes [Ruminococcus sp. SR1/5]
Length = 149
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M Y + E F+++ GEG AG +A F RF GCNL C +CDT + G
Sbjct: 1 MSTYQVVEKFVSINGEGRRAGELAAFIRFKGCNLQ-----------CSYCDTSWANEPGC 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVET 118
+ R +++ I E + LTGGEPLL+ + + L + +ET
Sbjct: 50 ESERLTEEEILSWIRET------GVKNVTLTGGEPLLRKGMEELIEAILEDPSQRVEIET 103
Query: 119 NGTIEPPQGIDWICVSP 135
NG+++ V P
Sbjct: 104 NGSVDLKPYHILKNVRP 120
>gi|154149121|ref|YP_001405929.1| radical SAM domain-containing protein [Campylobacter hominis ATCC
BAA-381]
gi|153805130|gb|ABS52137.1| radical SAM domain protein [Campylobacter hominis ATCC BAA-381]
Length = 247
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL-----WSGREQDRLSAQCRFCDTDFVGI 57
+ S+ E F ++QGEG AGR+AVF RF+GCNL + + R CDT +
Sbjct: 1 MLSLVESFASIQGEGKFAGRLAVFFRFAGCNLNCAGFNCELKSPKTGEILRGCDTIRA-V 59
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFE 113
+ + ++ L+++ + V+TGGEPLL P I + KR FE
Sbjct: 60 KTAHFDYEKISTVSQLLDKIGTNFKNSLPIIVITGGEPLLNYANPLFYEFIDEILKRNFE 119
Query: 114 IAVETNG 120
+ ETNG
Sbjct: 120 VHFETNG 126
>gi|317177720|dbj|BAJ55509.1| hypothetical protein HPF16_0912 [Helicobacter pylori F16]
Length = 251
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + ++ + Q LS+
Sbjct: 179 VL---ESKNAAQSIAEIKNLLKQ-----LSL 201
>gi|20094254|ref|NP_614101.1| organic-radical-activating enzyme [Methanopyrus kandleri AV19]
gi|19887288|gb|AAM02031.1| Organic-radical-activating enzyme [Methanopyrus kandleri AV19]
Length = 252
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 83/248 (33%), Gaps = 58/248 (23%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55
++ E+FL+LQGEG G F RFSGCNL +C +CD
Sbjct: 13 LNVYEVFLSLQGEGKFVGEPQAFVRFSGCNL-----------RCAYCDEPASRSSRRRAL 61
Query: 56 --GIQGTKGGRYNVDQLADLIEEQWI---TGEKEGRYCVLTGGEPLLQV---DVPLIQAL 107
+ G V + + E + E LTGGEPL+Q LI+ L
Sbjct: 62 IRRVSGEVELELPVPCGPEDVVEVLVELEDLEDTFGTVSLTGGEPLVQPWGALKELIERL 121
Query: 108 NKRGFEIAVETNGTIEPPQ---GIDWICVSPKAGCDLKIKGGQEL------------KLV 152
+RGF + +ETN ++ VS + V
Sbjct: 122 RERGFRVLLETNASLPDRAPLIDELADVVSADVKLPSHGPNMDDFPDRCLRFLERISAEV 181
Query: 153 FPQVNVSPENY-----------IGFDFERFSLQPMDGP--FLEENTNLAISYCFQNPKWR 199
+ +V + E E LQP G LE+ LA N R
Sbjct: 182 YAKVVLVDEECYQHAESALKGLHRLGVEPIYLQPATGSEHDLEDLWELAG---LVNADVR 238
Query: 200 LSVQTHKF 207
+ Q HK
Sbjct: 239 VLPQVHKL 246
>gi|24379363|ref|NP_721318.1| hypothetical protein SMU.916c [Streptococcus mutans UA159]
gi|24377290|gb|AAN58624.1|AE014932_7 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 243
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 50/237 (21%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ EIF T QGEG G+ +F R GC+ C +CD+ F K
Sbjct: 13 KLPVLEIFGPTFQGEGRAIGQKTMFVRTGGCD-----------YHCDWCDSAFTWDGSEK 61
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETN 119
DQ+ + +++ Y L+GG P L L++ L KR +AVET
Sbjct: 62 PTMMTSDQIIEALDKLGTYD-----YVTLSGGNPCLLAANMAQLVRKLKKRQVTLAVETQ 116
Query: 120 GTIE--PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---------VSPENYIGFDF 168
G+ + ID + +SPK Q L + ++ + E+ + F
Sbjct: 117 GSRWQEWLKAIDQVTLSPKPPSSKMKVNLQTLDFIVSNLDPQKVTYKIPIFDEDDLKFAQ 176
Query: 169 --------ERFSLQ-----PMDGPFLEENTNLAISYCFQNP-------KWRLSVQTH 205
+ L P + +N + +++ R+ Q H
Sbjct: 177 MIQGRYQPDVLYLSVGNPEPKASGDIVQNQLKRLKELWEHIAQDDSWGNVRVLPQLH 233
>gi|229002868|ref|ZP_04160744.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock3-17]
gi|229008542|ref|ZP_04165969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock1-4]
gi|228752737|gb|EEM02338.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock1-4]
gi|228758393|gb|EEM07564.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock3-17]
Length = 232
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 49/235 (20%)
Query: 7 KEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ +
Sbjct: 1 MEIFGPTIQGEGMVIGQKTMFIRTAGCD-----------YSCSWCDSAFTW-DGSTKEQI 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE- 123
++ E G + + ++GG P+L ++ + + + G A+ET G+
Sbjct: 49 RQMAPEEIWNELVEIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQ 108
Query: 124 -PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------- 170
ID + +SPK L + ++ + + +DFE
Sbjct: 109 EWLLQIDEVTISPKPPSSKMKTDFTMLDSIIHKLVRKDFSLKVVVFEDYDFEYAVKVHKR 168
Query: 171 -----FSLQPMDG---------------PFLEENTNLAISYCFQNPKWRLSVQTH 205
F LQ + E A+ C + ++ Q H
Sbjct: 169 YPQVPFFLQVGNDDTKTVDDAALIKNLLQKYERLIEKAVQ-CKEMNDAKVLPQLH 222
>gi|229917714|ref|YP_002886360.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Exiguobacterium sp. AT1b]
gi|229469143|gb|ACQ70915.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Exiguobacterium sp. AT1b]
Length = 236
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/238 (21%), Positives = 83/238 (34%), Gaps = 51/238 (21%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ E+F T QGEG G+ +F R +GC+ +C +CD+ F K
Sbjct: 9 PVLEVFGPTFQGEGRAIGQKTMFVRTAGCD-----------YRCSWCDSAFTWDGSEKPD 57
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG-- 120
D++ ++ + Y ++GG PLL L+ L KRG +AVET G
Sbjct: 58 MLTADEVIARLDALGMYD-----YVTISGGNPLLIAAMEDLVVKLKKRGVTLAVETQGSR 112
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF-----------------PQVNVSPENY 163
+ ID + +SPK ++L + + + E
Sbjct: 113 YQDWLTQIDDVTLSPKPPSSGMKTNWEQLDAIVERLRPEQTTFKVAVFDEADLAYAKEVQ 172
Query: 164 IGFDFERFSLQ---PMDGPFLE-------ENTNLAISYCFQNPKW---RLSVQTHKFI 208
+ + L P G + L ++P W R+ Q H +
Sbjct: 173 QRYSPDVMYLSAGNPEPGADGDITDAQLRRLKQLWED-VARDPSWQSVRVLPQLHTLL 229
>gi|152991808|ref|YP_001357529.1| hypothetical protein SUN_0212 [Sulfurovum sp. NBC37-1]
gi|151423669|dbj|BAF71172.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 252
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 86/249 (34%), Gaps = 45/249 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59
++ + E F ++QGEG +AG + F R GCNL G + CDT F
Sbjct: 1 MFYLTEQFFSIQGEGKYAGVPSYFLRTGGCNLSCPGFGATYEVDGEIRYGCDTYFAVDSA 60
Query: 60 TKGGRYNVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGFE 113
VD L++ T V+TGGEPL+ ++ L RG
Sbjct: 61 YAKSWKKVDDSRILVDRLQEEFTQIGYAPDVVITGGEPLMYHSDSVFYEVVSWLVDRGVR 120
Query: 114 IAVETNGTIEPPQG--IDWICVSPKAGCDLKIKGGQELKLVFPQV-----NVSPENYIGF 166
I ETNGTIE + L G K V PQ + S E ++ F
Sbjct: 121 ITFETNGTIEIDFDAFPAYKACVFALSLKLANSGEPASKRVIPQALKNLQSYSKETFLKF 180
Query: 167 DFER----------------------FSLQPM--DGPFLEENTNLAISYCFQNPKWRLSV 202
++ P+ + +N +C ++ +R S
Sbjct: 181 TIDKELVETTAFEEINEIRKILPELEVFCMPVGESRDTIWKNDRAVFEFCMKH-NFRYSD 239
Query: 203 QTHKFIGIR 211
+ H IR
Sbjct: 240 RLH----IR 244
>gi|29566198|ref|NP_817766.1| gp5 [Mycobacterium phage Rosebush]
gi|109521763|ref|YP_655685.1| gp5 [Mycobacterium phage Qyrzula]
gi|29424923|gb|AAN01847.1| gp5 [Mycobacterium phage Rosebush]
gi|91980707|gb|ABE67425.1| gp5 [Mycobacterium phage Qyrzula]
Length = 237
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI--Q 58
+ + E+F TLQGEG +AG F R GCNL C +CDT + +
Sbjct: 6 SVLPVSELFGPTLQGEGPYAGVTVQFLRLMGCNLS-----------CSWCDTPYTWDARE 54
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR----GFEI 114
+ D+++ V++GGEPLL QA+ + G E+
Sbjct: 55 HDLNAETTLLAWPDIVDALLP-----DTPLVISGGEPLLHQKHSAFQAVLQHAWRKGCEV 109
Query: 115 AVETNGTIEP----PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
+ETNGT+ P G VSPK +G Q+ + +++
Sbjct: 110 HIETNGTLAPLAATVSGTTVFAVSPKLSHAGPHRGRQDAAIADGWADLA 158
>gi|255658308|ref|ZP_05403717.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
gi|260849626|gb|EEX69633.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
Length = 251
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 79/253 (31%), Gaps = 64/253 (25%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF------------- 54
EIF ++QGEG + G VF R GCNL C +CDT+
Sbjct: 10 EIFSSIQGEGKYVGCRQVFVRLEGCNLD-----------CSYCDTENKPGSHPACQVETA 58
Query: 55 --VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110
T + A +I E TGGEPLL ++ L
Sbjct: 59 AGSRTFATIKNPMTASETAAVIANLL--REVPHEAVSFTGGEPLLHAAFIRAVVLQLRAL 116
Query: 111 G--FEIAVETNGTIEPP-----QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP--- 160
G ++ +ETNGT+ D I + K + +
Sbjct: 117 GQPCKVFLETNGTLYRELASILDITDIISMDIKLPSIVSRPQWEAHARFLELARTKDLYV 176
Query: 161 -----ENYIGFDFER-------------FSLQPMDG-----PFLEENTNLAISYCFQNPK 197
+FE+ F +QP+ E S+ ++ K
Sbjct: 177 KLVVSAETTKEEFEKSVALLEEQAPDALFIIQPVTPYGGCKAASPEKILACQSHALKHLK 236
Query: 198 -WRLSVQTHKFIG 209
R+ QTHK IG
Sbjct: 237 DVRVIPQTHKMIG 249
>gi|317012742|gb|ADU83350.1| hypothetical protein HPLT_04740 [Helicobacter pylori Lithuania75]
Length = 251
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T + L + +E + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNDPKPLIERLENLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYRKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + + +F
Sbjct: 119 IPLCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILDNAKSVHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + I QN +LS+
Sbjct: 179 VL------ESQNAAQSIIE--IQNLLKQLSL 201
>gi|319957590|ref|YP_004168853.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511]
gi|319419994|gb|ADV47104.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511]
Length = 253
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQG 59
++ + E FL++QGEG +AG + F R GCNL G E D + CDT F +
Sbjct: 1 MFWLTEKFLSIQGEGRYAGVPSYFLRTGGCNLHCPGFGAEYDVEGEKRYGCDTWFSVDRA 60
Query: 60 TKGGRYNVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQVDVPLIQAL----NKRGFE 113
V+ A L+EE + V+TGGEPL+ P + +RG +
Sbjct: 61 FAARWQAVESAAPLLEEMDRAFLEIGYLPHVVITGGEPLIYAADPAFYEVVEGLVERGVQ 120
Query: 114 IAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
I ETNGT+ + + + + L G + + + P+V + + G F +F
Sbjct: 121 ITFETNGTVAPDFLRYGAYKACTFALSVKLSNSGEPKERRIHPEVLRTIASEAGEAFLKF 180
Query: 172 SL 173
+L
Sbjct: 181 TL 182
>gi|269798253|ref|YP_003312153.1| radical SAM protein [Veillonella parvula DSM 2008]
gi|269094882|gb|ACZ24873.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
Length = 247
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/256 (19%), Positives = 80/256 (31%), Gaps = 74/256 (28%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF ++ GEG G + F R CN +C +CDT + +
Sbjct: 3 VIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSVFTEM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--------------------------- 98
++A++IE +TGGEPLLQ
Sbjct: 52 TAAEVANVIESL------GNHRITITGGEPLLQEAAVVELIDELNRRKAETMQDNTSGQA 105
Query: 99 --------VDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQ- 147
+ LN ++ +ETNGTI + W K L +
Sbjct: 106 GSTCIIDIDKFDKREMLNDSLYDFNIETNGTIIPSFHRDNVWFTYDYKTPSSLAEESMNV 165
Query: 148 ELKLVFPQVNV------SPENYIGFD--------FERFSLQPMDGPFLEENTNLAISYCF 193
++ V + ++ SPE+ + + P+ G + I Y
Sbjct: 166 DIFKVATERDLIKFVVGSPEDLDCMRRIIEQYPTVAQIYVSPVWGQIEPAS---IIDYMK 222
Query: 194 QNP--KWRLSVQTHKF 207
R +Q HKF
Sbjct: 223 AYNLQNVRFQLQIHKF 238
>gi|255321816|ref|ZP_05362966.1| FO synthase subunit 2 2 [Campylobacter showae RM3277]
gi|255300920|gb|EET80187.1| FO synthase subunit 2 2 [Campylobacter showae RM3277]
Length = 254
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 72/205 (35%), Gaps = 14/205 (6%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDR-----LSAQCRFCDT-DFV 55
++ E FL++QGEG +GR+A+F RF+GCNL R CDT V
Sbjct: 1 MSLNLVESFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRTVSPKTGETLTGCDTIRAV 60
Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV----DVPLIQALNKRG 111
+ I + + V+TGGEPLL + + G
Sbjct: 61 FTGHFSYQKITRADELIKIIQNLSANLRRKPIVVITGGEPLLHHKNQILLDFLNFATSEG 120
Query: 112 FEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+E ETNGTIE G I L+ G E + + + + F
Sbjct: 121 YEAHFETNGTIEVDFGKFEIYKKCRFAVSVKLENSGESEARRINQVALKAIKQNSAGSFY 180
Query: 170 RFSLQPMDGPFLEENTNL--AISYC 192
+F L + + C
Sbjct: 181 KFVLDKKSAEDGSAIAQISRILELC 205
>gi|283955402|ref|ZP_06372901.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp.
jejuni 414]
gi|283793162|gb|EFC31932.1| hypothetical protein C414_000450084 [Campylobacter jejuni subsp.
jejuni 414]
Length = 254
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 12/201 (5%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---RLSAQCRFCDTDFVGIQGTKG 62
+ E FL++QGEG ++G++A+F RF+GCN + CDT
Sbjct: 3 LVESFLSIQGEGKYSGKLAIFMRFAGCNFNCLGFNVKILKNDKILTGCDTIRAVFTKDFK 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVET 118
Y +L++ + V+TGGEPL+ + P IQ L K FEI E+
Sbjct: 63 ENYETLNANELLKRVIKLKQNFDPIIVITGGEPLIHYENPEFINFIQMLLKNKFEIHFES 122
Query: 119 NGTIEPPQGID--WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
NG+IE + L+ G ++ K + + + +N F +F L
Sbjct: 123 NGSIEIDFDKYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNCTKDSFYKFVL--- 179
Query: 177 DGPFLEENTNLAISYCFQNPK 197
D L+ + + P
Sbjct: 180 DAKTLDNSFLEINEILKEAPN 200
>gi|313673522|ref|YP_004051633.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
19672]
gi|312940278|gb|ADR19470.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
19672]
Length = 237
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 86/240 (35%), Gaps = 48/240 (20%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
IKE+F ++QGEG + G + +F RFSGC S C+ CDTD+
Sbjct: 12 IKEVFTSIQGEGKYVGALQLFVRFSGC-----------SIGCKGCDTDYSFTDSFDFNGT 60
Query: 66 NVDQLADLIEEQW-----ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
+V E +TGGEPLLQ D LI L G+ I +ET
Sbjct: 61 SVLSNPIKPERLACIIYDHIKPNSIHSISITGGEPLLQKDFLKELIFYLKGYGYRIFLET 120
Query: 119 NGTI-----EPPQGIDWICVSPKAGC--------DLKIKGGQELKLVFPQVNVSPENYIG 165
+G E +D I + K G D K E+K + + +N +
Sbjct: 121 SGFFIDRLNEVGDMVDIISLDFKLGESFGVEFSLDEIRKIKDEIKNKI-YIKIVIKNNLD 179
Query: 166 F-------------DFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLSVQTHKFIGIR 211
F + F L D + + Y + N Q HK + I+
Sbjct: 180 FVVGRKILDGLALLNKTEFYLHFYDNCI--KINQGIMDYFYSNGVDVFYVPQLHKLLEIK 237
>gi|295703393|ref|YP_003596468.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus megaterium DSM 319]
gi|294801052|gb|ADF38118.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Bacillus megaterium DSM 319]
Length = 243
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 16/157 (10%)
Query: 2 KLYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ EIF T+QGEG GR +F R +GC+ C +CD+ F G+
Sbjct: 3 NTIPVLEIFGPTIQGEGMVVGRKTMFVRTAGCD-----------YSCSWCDSAFTW-DGS 50
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETN 119
+ E G + + ++GG P L++ L++ L+ G + A+ET
Sbjct: 51 AKNDIRQLTAEQIWTELKEIGGECFDHVTISGGNPALIKAIGSLVELLHSHGVKAALETQ 110
Query: 120 G--TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
G + ID + +SPK L L +
Sbjct: 111 GSRYQDWFLKIDDLTISPKPPSSLMKTNFAVLDDIIE 147
>gi|254690112|ref|ZP_05153366.1| Radical SAM domain protein [Brucella abortus bv. 6 str. 870]
gi|256258366|ref|ZP_05463902.1| Radical SAM domain protein [Brucella abortus bv. 9 str. C68]
gi|260755651|ref|ZP_05867999.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str.
870]
gi|260884676|ref|ZP_05896290.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297247208|ref|ZP_06930926.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Brucella abortus bv. 5 str. B3196]
gi|260675759|gb|EEX62580.1| radical SAM domain-containing protein [Brucella abortus bv. 6 str.
870]
gi|260874204|gb|EEX81273.1| radical SAM domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297174377|gb|EFH33724.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Brucella abortus bv. 5 str. B3196]
Length = 251
Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 16 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 64 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKFEGYRFALETQGSVA 123
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 124 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 168
>gi|223038702|ref|ZP_03608995.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267]
gi|222880104|gb|EEF15192.1| FO synthase subunit 2 2 [Campylobacter rectus RM3267]
Length = 254
Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 12/184 (6%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL-----SAQCRFCDT-DFV 55
++ E FL++QGEG +GR+A+F RF+GCNL R CDT V
Sbjct: 1 MSLNLVENFLSIQGEGASSGRLAIFLRFAGCNLNCAGFGVRAISPKTGETLVGCDTVRAV 60
Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV----DVPLIQALNKRG 111
+ + I + ++ V+TGGEPLL + + G
Sbjct: 61 FTGHFSYQKISRADELAKITQNLSVNLRQKPILVITGGEPLLHHKNRILLDFLDFATSEG 120
Query: 112 FEIAVETNGTIEPPQGIDWI--CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+E ETNGTIE I L+ G E + + + + F
Sbjct: 121 YEPHFETNGTIEVDFARFEIYKKCRFAVSVKLENSGESEARRINATALKAIKQNAAGSFY 180
Query: 170 RFSL 173
+F L
Sbjct: 181 KFVL 184
>gi|18311650|ref|NP_558317.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum
str. IM2]
gi|18159047|gb|AAL62499.1| coenzyme PQQ synthesis protein, conjectural [Pyrobaculum aerophilum
str. IM2]
Length = 222
Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 74/223 (33%), Gaps = 40/223 (17%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ EIF +LQGEG + GR AVF R +GC +C +CDT + G
Sbjct: 8 RVLEIFASLQGEGINLGRPAVFVRLAGCP-----------IRCIYCDTKYSW-DFNAGVE 55
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGT 121
V+++ + G EPL+ L AL G + VET+G
Sbjct: 56 MGVEEIVAKALALSVVGHVVVTGG-----EPLIWQRRGLEELACALRALG-SVEVETSGA 109
Query: 122 IEPPQ----GIDWICVSPKAGCDLKIKGGQE---------LKLVFPQVNVSPENY----- 163
P +D+ VSPK K V + E
Sbjct: 110 YPPTPELDRCVDFYDVSPKLSNAGVKAPFSPFYASSPKAWFKFVVSNADDVEEVERFVVA 169
Query: 164 IGFDFERFSLQPMDGPFLEENTNL-AISYCFQNPKWRLSVQTH 205
G R L PM E L I +R++ + H
Sbjct: 170 YGIPRGRVFLMPMAESPEEHGEALRRIWDAAVRGGFRVTPRLH 212
>gi|15645550|ref|NP_207726.1| hypothetical protein HP0934 [Helicobacter pylori 26695]
gi|2314068|gb|AAD07976.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 251
Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 18/200 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA 115
+ + L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKTSWDYYNEPKPLIERLEDLAP--NYKDFDFILTGGEPSLYFNNPILISVLEHFYRQK 118
Query: 116 V----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ E+NG+I + L +E K + + + N +F
Sbjct: 119 IPLCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISY 191
L + I
Sbjct: 179 VL------ESQNAAQSIIEI 192
>gi|261838307|gb|ACX98073.1| hypothetical protein KHP_0871 [Helicobacter pylori 51]
Length = 251
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLAP--NYKNFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + ++ + Q LS+
Sbjct: 179 VL---ESKNAAQSIAEIQNLLKQ-----LSL 201
>gi|207091722|ref|ZP_03239509.1| hypothetical protein HpylHP_00921 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 251
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 43/244 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ + + L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKTSWDYYNDPKPLIERLEDLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKL 151
+ VE+NG+I +S K L+ + + K
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKF 178
Query: 152 VFPQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLS 201
V N + + L P+ L++N ++ +RLS
Sbjct: 179 VLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTTNKELDKNLKTLAPLAIEH-GFRLS 237
Query: 202 VQTH 205
+ H
Sbjct: 238 DRLH 241
>gi|148559581|ref|YP_001259791.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Brucella ovis ATCC 25840]
gi|148370838|gb|ABQ60817.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Brucella ovis ATCC 25840]
Length = 247
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ +C +CD+ ++
Sbjct: 12 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRCAWCDSLHA-VESRFRH 59
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 60 EWKPISVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 119
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 120 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 164
>gi|315586878|gb|ADU41259.1| radical SAM domain protein [Helicobacter pylori 35A]
Length = 251
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLAP--NYKNFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + ++ + Q LS+
Sbjct: 179 VL---ESKNAAQSIAEIQNLLKQ-----LSL 201
>gi|222055915|ref|YP_002538277.1| radical SAM protein [Geobacter sp. FRC-32]
gi|221565204|gb|ACM21176.1| Radical SAM domain protein [Geobacter sp. FRC-32]
Length = 249
Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 63/253 (24%), Positives = 92/253 (36%), Gaps = 66/253 (26%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-----TDFVGIQGTKG 62
E+F ++QGEG G VF RFSGCNL C +CD T + ++ T G
Sbjct: 10 EVFSSIQGEGLLVGLRQVFIRFSGCNLT-----------CSYCDTEPDRTQYCQLESTPG 58
Query: 63 GR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLL-QVDVPLIQALNKRGF 112
R VD+L +L+ W G + +TGGEPLL + + +
Sbjct: 59 RRDFFQVENPVPVDRLVNLV-SGWQRGWPGIHHSISITGGEPLLCHQLLQELLPALRHYL 117
Query: 113 EIAVETNGTIE-----PPQGIDWICVSPK----AGCDLKIKGGQELKLVFPQVNVSPENY 163
I +ETNG + +D++ + K +G + +E + +
Sbjct: 118 PIYLETNGILHGQLAQLLDHVDYVSMDIKLPSTSGYTDLWQAHEEFLRLAASKKTYVKTV 177
Query: 164 IGFDFE------------------RFSLQPM---------DGPFLEENTNLAISYCFQNP 196
IG D E LQP + E A Y +
Sbjct: 178 IGTDTEDWEIIRTAELVAAIDSRIPLILQPFTDLKGRVNLSAIRMLEMQETANRYLQE-- 235
Query: 197 KWRLSVQTHKFIG 209
R+ QTHKFIG
Sbjct: 236 -VRIIPQTHKFIG 247
>gi|317011141|gb|ADU84888.1| hypothetical protein HPSA_04520 [Helicobacter pylori SouthAfrica7]
Length = 251
Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 86/248 (34%), Gaps = 43/248 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL G E CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFGCETLLNDEILTGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE---- 113
K ++ + LIE + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKTSWDYYNEPSSLIERLVNLAPSYKDFDFILTGGEPSLHFNNPILTSVLEHFYHKKIP 120
Query: 114 IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKLVF 153
+ VE+NG+I +S K L+ + + K V
Sbjct: 121 LFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSTHFKFVL 180
Query: 154 PQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQ 203
N + + L P+ L++N ++ +RLS +
Sbjct: 181 DSQNAAQSIIEIKSLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIEH-GFRLSDR 239
Query: 204 THKFIGIR 211
H IR
Sbjct: 240 LH----IR 243
>gi|158314658|ref|YP_001507166.1| radical SAM domain-containing protein [Frankia sp. EAN1pec]
gi|158110063|gb|ABW12260.1| Radical SAM domain protein [Frankia sp. EAN1pec]
Length = 243
Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 84/233 (36%), Gaps = 46/233 (19%)
Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F T QGEG AG+ A+F R S CNL C +CD R
Sbjct: 20 VVERFGPTFQGEGPTAGQQALFLRLSACNLS-----------CAWCDEPHTW----DRNR 64
Query: 65 YNVDQLADLIEE---QWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
++VD ++ + + + V+TGGEPLLQ PL+ AL + G ++ +ETN
Sbjct: 65 FDVDAHSERLSQRTLLGWALDSPVTRVVVTGGEPLLQQAALFPLVAALAQAGRQVEIETN 124
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE---------- 169
GT+ P + + L ++ + P + F+
Sbjct: 125 GTVAPTAEMVEVVERFTVSPKLSGSRVAAVRRIVPAALTAFAGCGKAVFKFVISADGEID 184
Query: 170 -------RFSLQPMD-------GPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
RF L P+ P + + W LS + H +
Sbjct: 185 EIAELEGRFGLSPVWAMPEGTDEPSVLAGMRRLAEIALER-GWNLSPRLHVLL 236
>gi|303244776|ref|ZP_07331105.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
gi|302484817|gb|EFL47752.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
Length = 246
Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 81/246 (32%), Gaps = 45/246 (18%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR--EQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF ++ GEG GR +F RF GC L E + + CR + + G
Sbjct: 2 ISEIFSSIMGEGKFIGRRYIFVRFKGCPLNCIYCDEHVKDNLICR---VEEIPGSGEFKE 58
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
+++ LI+ + TGGEPLL + L+ G++ +E+NG
Sbjct: 59 YDDINDNDKLIDVINKLKTPDLFAISFTGGEPLLYADKIKEYSKILHNLGYKTHLESNGM 118
Query: 122 IEPPQGI------------DWICVSPKAGCDLKIKGGQELKLVFP--------------- 154
++ + + L + +K ++
Sbjct: 119 YPDRITFFDYASIDIKLLEHFVNMDIETYTKLYKNELKSIKKLYDLGSDVYAKVVIMGNT 178
Query: 155 ---QVNVSPENYIGFDFERFSLQPMDG----PFLEENTNL--AISYCFQNPKWRLSV--Q 203
V ++ +QP+ N L + C + K + Q
Sbjct: 179 NPKVVENIAKDLSDIGDIMLCIQPVSSCLNIKTTPTNKKLLDIMELCGAHLKDNVICTSQ 238
Query: 204 THKFIG 209
HK++G
Sbjct: 239 MHKYLG 244
>gi|118474370|ref|YP_891426.1| radical SAM domain-containing protein [Campylobacter fetus subsp.
fetus 82-40]
gi|261886249|ref|ZP_06010288.1| radical SAM domain-containing protein [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|118413596|gb|ABK82016.1| radical SAM domain protein [Campylobacter fetus subsp. fetus 82-40]
Length = 241
Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 46/239 (19%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGR-----EQDRLSAQCRFCDT-DFVG 56
+ ++ E F ++QGEG +GR ++F R GCNL + + CDT V
Sbjct: 1 MVNVVEYFTSVQGEGKFSGRYSLFIRLGGCNLSCKGFGVKIKSPKTGEILVGCDTIKAVQ 60
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGF 112
+ + +++ + L +L++E V+TGGEPLL + IQ ++ +
Sbjct: 61 TEHFEHNKFDFEALVNLVKETEFK-----PLIVITGGEPLLWYKDEDLIKFIQWCFEQNY 115
Query: 113 EIAVETNGTIEPPQGIDWI------CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
E+ ETNG+I + VS K + K + + + + + + F
Sbjct: 116 EVHFETNGSIFVDFDKFKVYKKCKFAVSVKLAISGEPKSKRINQKALQAIFANADAFYKF 175
Query: 167 DFER----------------FSLQPM--DGPFLEENTNLAISYCFQN-------PKWRL 200
R P+ + L +N +C +N RL
Sbjct: 176 VICRSELGEINEILELQNGEVWCMPLGKNISELSKNAKRVAEFCIKNGFNYSDRLHVRL 234
>gi|315452915|ref|YP_004073185.1| Radical SAM domain protein [Helicobacter felis ATCC 49179]
gi|315131967|emb|CBY82595.1| Radical SAM domain protein [Helicobacter felis ATCC 49179]
Length = 242
Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 85/237 (35%), Gaps = 36/237 (15%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQ 58
E F +LQGEG G+ A+F R GCN G + D + CD+ +
Sbjct: 1 MTLPFVESFYSLQGEGSCVGQPAIFIRLGGCNFKCTGFGVQSDIEGKKVLGCDSAYAIYP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEI 114
K N Q +L+++ VLTGGEP L P ++ L KRG I
Sbjct: 61 NAKWQYLNSTQ--ELLDKLPPFNSNRPPLIVLTGGEPSLHFKNPILLEALEILLKRGHGI 118
Query: 115 AVETNG----TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP---------------Q 155
VE+NG PP +SPK + + L+ +
Sbjct: 119 WVESNGSVFFDFNPPLDSLHFTLSPKLSFAQEKTPLKPLQHILDHALEVVFKFVLHCPTD 178
Query: 156 VNVSPENYIGFDFER---FSLQPM--DGPFLEENTNLAISYCFQN---PKWRLSVQT 204
V+ F++ L P+ D L+E N C ++ RL +Q
Sbjct: 179 VDEVQVLLKQLRFKKPLLIYLMPLATDMQTLQEGLNSLAGVCLEHGYSLGQRLHIQL 235
>gi|308062249|gb|ADO04137.1| hypothetical protein HPCU_04900 [Helicobacter pylori Cuz20]
Length = 251
Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 15/205 (7%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNP 196
L + ++ + Q P
Sbjct: 179 VL---ESKNAAQSIIEIQNLLKQLP 200
>gi|189424905|ref|YP_001952082.1| radical SAM protein [Geobacter lovleyi SZ]
gi|189421164|gb|ACD95562.1| Radical SAM domain protein [Geobacter lovleyi SZ]
Length = 254
Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 55/251 (21%), Positives = 85/251 (33%), Gaps = 58/251 (23%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-----IQG 59
+ EIF +LQGEG AG +F RF GCNL C FCDTDF ++
Sbjct: 12 PLVEIFSSLQGEGVLAGYRQIFVRFPGCNLD-----------CSFCDTDFEAQTACRVET 60
Query: 60 TKG--------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKR 110
T G +++ L +I +TGGEP+L D+
Sbjct: 61 TPGSGQFQELAQPVSLETLLGIITRWCKQLPNAHHSISITGGEPMLHADLLARWLPELNI 120
Query: 111 GFEIAVETNGTIEP-----PQGIDWICVSPKAG----CDLKIKGGQELKLVFPQVNVSPE 161
I +ETNGT+ + +D I + K + + + + +VS +
Sbjct: 121 LLPIHLETNGTLPEALPRLIEHLDVISMDIKLPGSAATPELWQEHKRFLEIALERDVSVK 180
Query: 162 --------NYIGFDFER----------FSLQPMDGPFL------EENTNLAISYCFQNPK 197
+ F +QP+ G E +
Sbjct: 181 VIVGELTTEQELLKACKLVAELDDEIPFIIQPVTGRDGRVAVAPERLMQFQAVAAKRLCD 240
Query: 198 WRLSVQTHKFI 208
R+ Q H+F+
Sbjct: 241 VRVLPQMHRFL 251
>gi|313894807|ref|ZP_07828367.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976488|gb|EFR41943.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 243
Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 56/252 (22%), Positives = 83/252 (32%), Gaps = 65/252 (25%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD---------FVG 56
I EIF ++QGEG + G VF R GCNL C +CDT+ V
Sbjct: 5 IIEIFSSIQGEGKYVGCRQVFVRLEGCNLD-----------CTYCDTEKEIGRHPTCVVE 53
Query: 57 IQGTKGGRYNVDQLADL----IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR-G 111
+ ++ + + + G +TGGEPLL VP I+AL+ R
Sbjct: 54 MPAGSHELHSYENPLSIETVAALAAQVAGGVPHHSLSVTGGEPLLH--VPFIRALSARIP 111
Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGC-------------------DLKIKGGQELKLV 152
I +ETNGT+ CVS + + +K+V
Sbjct: 112 LPIFLETNGTLYEALAHCIDCVSYISMDIKLPGVLSHPVWDAHARFLKIARTKDVYVKVV 171
Query: 153 FPQVNVSPENYIGFDFER-------FSLQPM---------DGPFLEENTNLAISYCFQNP 196
E LQP+ L +A++
Sbjct: 172 VAAETEDDEVRTAARMVADTAPDVPLILQPVTPYGGCTAPTPARLLALQQIALAEVKD-- 229
Query: 197 KWRLSVQTHKFI 208
R+ QTH+ +
Sbjct: 230 -VRVIPQTHRMM 240
>gi|317182232|dbj|BAJ60016.1| hypothetical protein HPF57_0942 [Helicobacter pylori F57]
Length = 251
Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 15/205 (7%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEKESKRINLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNP 196
L + ++ + Q P
Sbjct: 179 VL---ESKNAAQSIIEIQNLLKQLP 200
>gi|261839719|gb|ACX99484.1| hypothetical protein HPKB_0901 [Helicobacter pylori 52]
Length = 251
Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/250 (19%), Positives = 85/250 (34%), Gaps = 47/250 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLAP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKL 151
+ VE+NG+I +S K L+ + + K
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSVHFKF 178
Query: 152 VFPQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLS 201
V N + + L P+ L++N ++ +RLS
Sbjct: 179 VLDSQNAAQSIVEIQNLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIEH-GFRLS 237
Query: 202 VQTHKFIGIR 211
+ H IR
Sbjct: 238 DRLH----IR 243
>gi|208434836|ref|YP_002266502.1| hypothetical protein HPG27_882 [Helicobacter pylori G27]
gi|208432765|gb|ACI27636.1| hypothetical protein HPG27_882 [Helicobacter pylori G27]
Length = 251
Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/250 (18%), Positives = 84/250 (33%), Gaps = 47/250 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ + L + +E + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKTSWDYYNEPKPLIERLENLAP--NYKHFDFILTGGEPSLYFNNPILLSVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKL 151
+ VE+NG+I +S K L+ + + K
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSAHFKF 178
Query: 152 VFPQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLS 201
V N + + L P+ L++N ++ +RLS
Sbjct: 179 VLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTTNKELDKNLKTLAPLAIKH-GFRLS 237
Query: 202 VQTHKFIGIR 211
+ H IR
Sbjct: 238 DRLH----IR 243
>gi|229099948|ref|ZP_04230870.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-29]
gi|228683493|gb|EEL37449.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-29]
Length = 233
Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 16/168 (9%)
Query: 8 EIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
EIF T+QGEG G+ +F R +GC+ C +CD+ F G+ +
Sbjct: 3 EIFGPTIQGEGMVIGQKTMFIRTAGCD-----------YSCSWCDSAFTW-DGSAKEQVR 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE-- 123
++ E G + + ++GG P+L ++ + + + G A+ET G+
Sbjct: 51 QMAPEEIWNELVEIGGENFSHVTISGGNPVLLKNIQFLLTVLKENGIRTAIETQGSKWQE 110
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
I+ + +SPK L V ++ + FE +
Sbjct: 111 WLLQIEEVTISPKPPSSKMKTDFTMLDSVIHKLERKDFSLKVVVFEEY 158
>gi|325958051|ref|YP_004289517.1| Radical SAM domain-containing protein [Methanobacterium sp. AL-21]
gi|325329483|gb|ADZ08545.1| Radical SAM domain protein [Methanobacterium sp. AL-21]
Length = 233
Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 80/250 (32%), Gaps = 56/250 (22%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK +I E+F + QGEG GR +F RFSGCNL C +CDT
Sbjct: 1 MKT-NINEVFSSFQGEGTLIGRRQIFVRFSGCNLD-----------CSYCDTP-ESRNPQ 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
G + D+L + TGGEPLL + + + L + F+ +ETNG
Sbjct: 48 YGELISTDELYSKVNSIITPDFHS---ISFTGGEPLLHSNF-IKKFLEEYEFKSMLETNG 103
Query: 121 TIEPPQGI-----DWICVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERF--- 171
T+ D++ + K L L + + + I +
Sbjct: 104 TLPAELNKIAHLLDYVSLDIKLPEHGASNNYADILDLELKSIKLLRDEEINTYIKVVVMP 163
Query: 172 --------------------------SLQPMDG-PFLEENTNLAISY---CFQNPKWRLS 201
LQP+ + T +
Sbjct: 164 QTEVELISSIASRIADEVEKTSELVMVLQPVSPITVWADGTQKLFELSEVAGKYIDVLTI 223
Query: 202 VQTHKFIGIR 211
Q HK + ++
Sbjct: 224 PQVHKLLNVK 233
>gi|308183085|ref|YP_003927212.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4]
gi|308065270|gb|ADO07162.1| hypothetical protein HPPC_04700 [Helicobacter pylori PeCan4]
Length = 251
Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLTP--NYKHFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEKESKRINLKALQNILNNAKSVHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + ++ + Q LS+
Sbjct: 179 VL---ESKNAAQSIAEIKNLLKQ-----LSL 201
>gi|308184717|ref|YP_003928850.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180]
gi|308060637|gb|ADO02533.1| hypothetical protein HPSJM_04750 [Helicobacter pylori SJM180]
Length = 251
Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 83/248 (33%), Gaps = 43/248 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPL----IQALNKRGFE 113
+ ++ LIE + +LTGGEP L + P+ ++ + +
Sbjct: 61 KFQTSWDYYNEPKPLIERLVNLAPSYKDFDFILTGGEPSLYFNNPILLSVLEHFHHKKIP 120
Query: 114 IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKLVF 153
+ VE+NG+I +S K L+ + + K V
Sbjct: 121 LFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSAHFKFVL 180
Query: 154 PQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQ 203
N + + L P+ L++N ++ +RLS +
Sbjct: 181 DSQNAAQSIAEIQSLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIKH-GFRLSDR 239
Query: 204 THKFIGIR 211
H IR
Sbjct: 240 LH----IR 243
>gi|317009590|gb|ADU80170.1| radical SAM domain-containing protein [Helicobacter pylori India7]
Length = 251
Score = 97.7 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 47/250 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS---AQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTPFNDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T + L + + + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNDPKPLIERLVNLAP--SYKDFDFILTGGEPSLYFNNPILLSVLEHFYRKK 118
Query: 114 --IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKL 151
+ VE+NG+I +S K L+ + + K
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKF 178
Query: 152 VFPQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLS 201
V N + + L P+ + L++N ++ +RLS
Sbjct: 179 VLDSQNAAQSITEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKH-GFRLS 237
Query: 202 VQTHKFIGIR 211
+ H IR
Sbjct: 238 DRLH----IR 243
>gi|85373083|ref|YP_457145.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter
litoralis HTCC2594]
gi|84786166|gb|ABC62348.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter
litoralis HTCC2594]
Length = 245
Score = 97.7 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 79/233 (33%), Gaps = 47/233 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYN 66
EIF ++QGEG AG F R S CNL C +CDT + +G +
Sbjct: 15 EIFASVQGEGLSAGAPVAFVRLSRCNL-----------ACVWCDTAYTWHFEGDTRPHRS 63
Query: 67 VDQLADLIEE--------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
+ + + V+TGGEPL+Q + +ET
Sbjct: 64 GETFERKANQVSLDPADVAERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVEIET 123
Query: 119 NGTIEPPQGIDW----ICVSPK-------AGCDLKIKGGQE--------LKLVFPQVNVS 159
NGT + P +D VSPK A L + K V + +
Sbjct: 124 NGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITERLDSYALDDRAFFKFVIAEPSDV 183
Query: 160 PE-----NYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E +R L P D L E + C ++ +R+S + H
Sbjct: 184 EEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEH-GFRMSDRLH 235
>gi|188527756|ref|YP_001910443.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470]
gi|188143996|gb|ACD48413.1| hypothetical protein HPSH_04915 [Helicobacter pylori Shi470]
Length = 251
Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPQSLIERLEDLTP--NYKNFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFNPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + ++ + Q LS+
Sbjct: 179 VL---ESKNATQSIAEIQNLLKQ-----LSL 201
>gi|108563339|ref|YP_627655.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1]
gi|107837112|gb|ABF84981.1| hypothetical protein HPAG1_0914 [Helicobacter pylori HPAG1]
Length = 251
Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 85/248 (34%), Gaps = 43/248 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGIQ 58
+ E F +LQGEG + G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKNIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV- 116
K ++ LIE + +LTGGEP L + P++ ++ + + +
Sbjct: 61 KFKTSWDYYNEPKPLIERLVNLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKIP 120
Query: 117 ---ETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKLVF 153
E+NG+I +S K L+ + + K V
Sbjct: 121 LCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKFVL 180
Query: 154 PQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQ 203
N + + L P+ + L++N ++ +RLS +
Sbjct: 181 ESQNAAQSIIEIQNLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIEH-GFRLSDR 239
Query: 204 THKFIGIR 211
H IR
Sbjct: 240 LH----IR 243
>gi|242398853|ref|YP_002994277.1| Organic radical activating enzyme, radical SAM superfamily
[Thermococcus sibiricus MM 739]
gi|242265246|gb|ACS89928.1| Organic radical activating enzyme, radical SAM superfamily
[Thermococcus sibiricus MM 739]
Length = 251
Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/260 (20%), Positives = 84/260 (32%), Gaps = 67/260 (25%)
Query: 6 IKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------- 53
+ EIF + QGEGG GR +F RF+GC+L C +CD+
Sbjct: 3 LVEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDLK-----------CWWCDSANYIIASK 51
Query: 54 -----FVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLI 104
+ T Y N +++ + TGGEP LQ L+
Sbjct: 52 VPKWRYEVEPFTGKFEYKPNPANFEEVVSAILHLDTGDIHSISYTGGEPTLQTRNLSTLM 111
Query: 105 QALNKRGFEIAVETNGTIEP---------------------PQGIDWICVSPKAGCDLKI 143
+ +++ GF+ +ETNG+ DW + K ++I
Sbjct: 112 KKMHELGFKNFLETNGSRPERINDIAHLVDYASVDIKDATARATEDWKNLVLKEVESIRI 171
Query: 144 KGGQELKLVF--------PQVNVSPENYIGFDFERFSLQP-----MDGPFLEENTNLAIS 190
+K + +V + +QP M L N A
Sbjct: 172 LKRSGVKTYAKLVVTQNTKEEDVKWYAKLLKGQAPIVIQPREPIEMSQTQLMRLYNTAAK 231
Query: 191 YCFQNPKWRLSVQTHKFIGI 210
LS Q HK++ +
Sbjct: 232 -IMGRENVGLSFQVHKYLNV 250
>gi|317180219|dbj|BAJ58005.1| hypothetical protein HPF32_0423 [Helicobacter pylori F32]
Length = 251
Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/250 (19%), Positives = 85/250 (34%), Gaps = 47/250 (18%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILYDEILMGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLTP--NYKNFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKL 151
+ VE+NG+I +S K L+ + + K
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSVHFKF 178
Query: 152 VFPQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLS 201
V N + + L P+ L++N ++ +RLS
Sbjct: 179 VLESKNAAQSIIEIQNLLKQLSLKNNEIFLMPLGTTNKELDKNLKTLAPLAIKH-GFRLS 237
Query: 202 VQTHKFIGIR 211
+ H IR
Sbjct: 238 DRLH----IR 243
>gi|217033986|ref|ZP_03439409.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10]
gi|216943619|gb|EEC23067.1| hypothetical protein HP9810_883g56 [Helicobacter pylori 98-10]
Length = 251
Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/211 (20%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLAP--NYKNFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSVHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + I QN +LS+
Sbjct: 179 VL------ESKNAAQSIIE--IQNLLKQLSL 201
>gi|325996217|gb|ADZ51622.1| Queuosine biosynthesis protein [Helicobacter pylori 2018]
gi|325997811|gb|ADZ50019.1| Queuosine biosynthesis protein [Helicobacter pylori 2017]
Length = 251
Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 84/248 (33%), Gaps = 43/248 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE---- 113
K ++ LIE + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKIP 120
Query: 114 IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKLVF 153
+ VE+NG+I +S K L+ + + K V
Sbjct: 121 LFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSAHFKFVL 180
Query: 154 PQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQ 203
N + + L P+ L++N ++ +RLS +
Sbjct: 181 ESQNAAQSIAEIQSLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIEH-GFRLSDR 239
Query: 204 THKFIGIR 211
H IR
Sbjct: 240 LH----IR 243
>gi|322418702|ref|YP_004197925.1| Radical SAM domain-containing protein [Geobacter sp. M18]
gi|320125089|gb|ADW12649.1| Radical SAM domain protein [Geobacter sp. M18]
Length = 250
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 66/257 (25%), Positives = 87/257 (33%), Gaps = 67/257 (26%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGI 57
+ E F ++QGEG G VF RFSGCNL C FCDT D +
Sbjct: 7 PLVECFSSIQGEGVLVGLRQVFLRFSGCNLN-----------CSFCDTPGMTAVPDECLL 55
Query: 58 QGTKGGR--------YNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALN 108
+ T G R ++++A LIE W + +TGGEPLL +
Sbjct: 56 ELTPGRRDFFKVPNPVTLERVATLIES-WTAAWPGIHHSISVTGGEPLLFGTLLEEWLPV 114
Query: 109 KRGF-EIAVETNGTIEPPQGIDW---------ICVSPKAGCDLKIKGGQEL--------- 149
R F I +ETNGT+ I + +GC +
Sbjct: 115 LRKFLPIYLETNGTLPEALAPLIPHLDSVGMDIKLPSSSGCPELWDQHRAFLELAAMKEV 174
Query: 150 --KLVFPQVNVSPEN------YIGFDFE-RFSLQPMDGPFLEENT--------NLAISYC 192
K+V Q E D E LQPM S
Sbjct: 175 FVKIVVDQSTQDWEIQRSCAMIAAVDPEIPLILQPMTRENGSIGITPLRTLELQELTSPL 234
Query: 193 FQNPKWRLSVQTHKFIG 209
+ R+ QTHKF+G
Sbjct: 235 KE---VRVIPQTHKFMG 248
>gi|253701563|ref|YP_003022752.1| radical SAM protein [Geobacter sp. M21]
gi|251776413|gb|ACT18994.1| Radical SAM domain protein [Geobacter sp. M21]
Length = 251
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 84/254 (33%), Gaps = 61/254 (24%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--- 61
+ E F ++QGEG G VF R +GCNL C FCDT + +
Sbjct: 8 PLVECFSSIQGEGVLVGLRQVFLRLAGCNLN-----------CSFCDTPGMSETPKECLL 56
Query: 62 ---GGRYNVDQLA--------DLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQA-LN 108
GR + ++ + E W G + +TGGEPLL +
Sbjct: 57 ELTPGRRDFFRVPNPVGLERVATLLESWTAGWPGIHHSISVTGGEPLLYAAELKEWLPVL 116
Query: 109 KRGFEIAVETNGTIEP-----PQGIDWICVSPK----AGCDLKIKGGQEL---------- 149
+ + +ETNGT+ +D+I + K +GC +
Sbjct: 117 RTLLPVYLETNGTLPDQLAPLMPHLDYIGMDFKLPSTSGCTPLWDAHRAFLETASKTRVF 176
Query: 150 -KLVFPQVNVSPENYIGFDF-------ERFSLQPMDGPFL------EENTNLAISYCFQN 195
K+V Q E LQPM L C
Sbjct: 177 VKIVVDQGTEDWEIERSCQLIMAVNPGIPLILQPMTLANGTVALPALRMLELQ-ELCSGL 235
Query: 196 PKWRLSVQTHKFIG 209
+ R+ QTHKF+G
Sbjct: 236 NEVRVIPQTHKFMG 249
>gi|307637623|gb|ADN80073.1| Queuosine Biosynthesis protein [Helicobacter pylori 908]
Length = 251
Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 84/248 (33%), Gaps = 43/248 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE---- 113
K ++ LIE + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKIP 120
Query: 114 IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKLVF 153
+ VE+NG+I +S K L+ + + K V
Sbjct: 121 LFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSAHFKFVL 180
Query: 154 PQVNVSP--------ENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQ 203
N + + L P+ L++N ++ +RLS +
Sbjct: 181 ESQNAAQSIAEIQSLLKQLSLKNNEIFLMPLGTTNNELDKNQKTLAPLAIEH-GFRLSDR 239
Query: 204 THKFIGIR 211
H IR
Sbjct: 240 LH----IR 243
>gi|109947617|ref|YP_664845.1| hypothetical protein Hac_1082 [Helicobacter acinonychis str.
Sheeba]
gi|109714838|emb|CAJ99846.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 251
Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 86/248 (34%), Gaps = 43/248 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL G + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGFE 113
K ++ LIE + +LTGGEP L + P+ ++ +++
Sbjct: 61 KFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIP 120
Query: 114 IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKLVF 153
+ VE+NG+I +S K L+ + + K V
Sbjct: 121 LFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRINLKALQNILDNAKSVHFKFVL 180
Query: 154 PQVNV--------SPENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQ 203
N S + L P+ + L+ + + ++ +RLS +
Sbjct: 181 DSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLKIIAPLAIEH-GFRLSDR 239
Query: 204 THKFIGIR 211
H IR
Sbjct: 240 LH----IR 243
>gi|322667095|gb|EFY63267.1| hypothetical protein SEEM507_17615 [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
Length = 81
Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
Y I E+F TLQGEG G A+F R GC + C +CDT +
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDK 46
>gi|212223604|ref|YP_002306840.1| organic radical activating enzyme [Thermococcus onnurineus NA1]
gi|212008561|gb|ACJ15943.1| organic radical activating enzyme [Thermococcus onnurineus NA1]
Length = 253
Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 59/266 (22%), Positives = 92/266 (34%), Gaps = 70/266 (26%)
Query: 1 MKLYSIK-EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD- 53
MKL I E+F + QGEGG GR +F RF+GC+L C +CD+
Sbjct: 1 MKL--IMAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDLN-----------CVWCDSKE 47
Query: 54 -----------FVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-- 98
+ T Y N L ++++ + TGGEP LQ
Sbjct: 48 FIDASKVLRWRYEVEPFTGKFEYKPNPASLGEVVDAILRLDTGDIHSISYTGGEPTLQVR 107
Query: 99 VDVPLIQALNKRGFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQE 148
L++ +++ GF +ET+G + ID + KA D K +E
Sbjct: 108 PLKALMERMHELGFSNFLETHGGLPELIKEVAHLTDYASIDIKDETAKATEDWKALVLRE 167
Query: 149 LKLVFPQVNVSPENYIGFDFER-------------------FSLQP-----MDGPFLEEN 184
++ + E Y + +QP + P L E
Sbjct: 168 VESIRILKEAGAETYAKLVVTKDTKIENVRWYASLLKGLAPLVIQPREPIDISQPKLMEF 227
Query: 185 TNLAISYCFQNPKWRLSVQTHKFIGI 210
A + LS Q HK++ +
Sbjct: 228 YREA-ALIMGRKNVGLSFQVHKYLNV 252
>gi|119715336|ref|YP_922301.1| radical SAM domain-containing protein [Nocardioides sp. JS614]
gi|119535997|gb|ABL80614.1| Radical SAM domain protein [Nocardioides sp. JS614]
Length = 246
Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 22/187 (11%)
Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF TLQGEG AG+ A F R CNL C +CDT + ++
Sbjct: 22 ISEIFGPTLQGEGPSAGKSAAFVRLGACNL-----------ACVWCDTSYTW-DSSRYDL 69
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTI 122
+ E V+TGGEP LQ +A+ + G + +ET+G++
Sbjct: 70 ASELVAKPTAEVADKALSFGVPLVVITGGEPALQAVEAARLAEAVTRSGSAVELETSGSL 129
Query: 123 EPPQ---GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
+ I VSPK + V ++V P + + F P +
Sbjct: 130 PLGPLADAVRLIVVSPKLANAGGRPQARLRWPVLEAISVLPHSVLKF----VVASPEELA 185
Query: 180 FLEENTN 186
++E T+
Sbjct: 186 EVDEITS 192
>gi|15611935|ref|NP_223586.1| hypothetical protein jhp0868 [Helicobacter pylori J99]
gi|4155435|gb|AAD06440.1| putative [Helicobacter pylori J99]
Length = 251
Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 84/248 (33%), Gaps = 43/248 (17%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE---- 113
K ++ LIE + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKIP 120
Query: 114 IAVETNGTIEPPQGID----WICVSPKAGCDLKIKGGQ----------------ELKLVF 153
+ VE+NG+I +S K L+ + + K V
Sbjct: 121 LFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSVHFKFVL 180
Query: 154 PQVNVS--------PENYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQ 203
N + + L P+ L++N ++ +RLS +
Sbjct: 181 ESQNAAHSIAEIQSLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIEH-GFRLSDR 239
Query: 204 THKFIGIR 211
H IR
Sbjct: 240 LH----IR 243
>gi|134299611|ref|YP_001113107.1| radical SAM domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134052311|gb|ABO50282.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
Length = 247
Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/255 (24%), Positives = 93/255 (36%), Gaps = 68/255 (26%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------FVGIQGT 60
EIF ++QGEG + G +F RF+GCN +C FCDT + ++ T
Sbjct: 7 VEIFSSVQGEGPYVGLRQIFIRFAGCN-----------WKCAFCDTPTNPRPEYFTMEKT 55
Query: 61 KGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
G R ++L++LI++ + LTGGEPL+ D L+ AL
Sbjct: 56 PGQRDFIQVANPVKPERLSELIKQYYNLSHHHS--ISLTGGEPLIYHDYITRLVPALQGT 113
Query: 111 GFEIAVETNGTIEP-----PQGIDWICVSPKAGCDLK----IKGGQELKLVFPQVNV--- 158
I +ETNGT+ + I + K K + +E V Q +V
Sbjct: 114 RKGIYLETNGTLPEELASVINLCNMISMDIKLESATKEKTPWELHREFLKVASQRDVYVK 173
Query: 159 --------------SPENYIGFDFE-RFSLQPMD---GPFLEEN------TNLAISYCFQ 194
+ E D QP+ G N LA+S
Sbjct: 174 IVVSNKTNSHELERAIEIIQSIDPNIELVFQPVTPKGGVLPPTNDSILRFQELALSAIK- 232
Query: 195 NPKWRLSVQTHKFIG 209
R+ QTH +G
Sbjct: 233 --NVRVIPQTHLMMG 245
>gi|327400839|ref|YP_004341678.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
SNP6]
gi|327316347|gb|AEA46963.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
Length = 238
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 80/242 (33%), Gaps = 55/242 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK---G 62
I+EIF ++QGEG G +F RF+ CNL C +CDT T G
Sbjct: 14 IREIFESIQGEGILVGVRQLFVRFARCNLN-----------CIYCDTPTDSTDCTNHITG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + + E + LTGGEPLL D A + +ETN ++
Sbjct: 63 EKLPNPVSREYVSEFFDRNVHS---ICLTGGEPLLYAD---FIASLPKTRPFYLETNMSL 116
Query: 123 EPPQ---GIDWICVSPKAGCDLKIKGGQEL---------------------KLVFPQVNV 158
+ + G +EL K V P+
Sbjct: 117 PEMAKKLTHVDFVAGDFKVREAIVDGYEELVENTVRCFRILRNREDRLTFCKFVLPERFD 176
Query: 159 SPENYIGF-----DFERFSLQPMDGPFLEENTNLAISY---CFQN--PKWRLSVQTHKFI 208
+ E E F LQP+ G + + + R+ Q HK++
Sbjct: 177 AEEVINNAISVENYVECFILQPVFG-TSKRGIETILELQKVLMEKVCVDVRVIPQVHKYL 235
Query: 209 GI 210
G+
Sbjct: 236 GV 237
>gi|197117706|ref|YP_002138133.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem]
gi|197087066|gb|ACH38337.1| 7-carboxy-7-deazaguanine synthase [Geobacter bemidjiensis Bem]
Length = 251
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/253 (21%), Positives = 85/253 (33%), Gaps = 59/253 (23%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK--- 61
+ E F ++QGEG G VF R +GCNL C FCDT + +
Sbjct: 8 PLVECFSSIQGEGVLVGLRQVFLRLAGCNLN-----------CSFCDTPGMSETPKECLL 56
Query: 62 ---GGRYNVDQLA--------DLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQA-LN 108
GR + ++ + E W G + +TGGEPLL +
Sbjct: 57 ELTPGRRDFFKVPNPVGLERVATLLESWTEGWPGIHHSISVTGGEPLLYAKELKEWLPVL 116
Query: 109 KRGFEIAVETNGT-----IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ-------- 155
+ + +ETNGT +D+I + K + F +
Sbjct: 117 RTLLPVYLETNGTLAHQLAPLMPHLDYIGMDFKLPSTSGCVNLWDAHRAFLETASKTSVF 176
Query: 156 ----VNVSPENYIGFDFER----------FSLQPM---DGPFLEENTNLAI--SYCFQNP 196
++ S E++ + LQPM G + C
Sbjct: 177 VKIVIDQSTEDWEIERSCQMIMAVNPGIPLILQPMTLGSGAVALPALRMLELQELCSGLN 236
Query: 197 KWRLSVQTHKFIG 209
+ R+ QTHKF+G
Sbjct: 237 EVRVIPQTHKFMG 249
>gi|308063762|gb|ADO05649.1| hypothetical protein HPSAT_04565 [Helicobacter pylori Sat464]
Length = 251
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGI- 57
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP 60
Query: 58 --QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-- 113
+ T L + +E+ + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFKETWDYYNEPKSLIERLEDLTP--NYKNFDFILTGGEPSLYFNNPILISVLEHFYHKK 118
Query: 114 --IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ VE+NG+I + L +E K + + + N +F
Sbjct: 119 IPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEENKRINLKALQNILNNAKSTHFKF 178
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
L + ++ + Q LS+
Sbjct: 179 VL---ESKNATQSIAEIQNLLKQ-----LSL 201
>gi|282850491|ref|ZP_06259870.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
gi|282579984|gb|EFB85388.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
Length = 251
Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/260 (21%), Positives = 85/260 (32%), Gaps = 78/260 (30%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
+ EIF ++ GEG G + F R CN +C +CDT + +
Sbjct: 3 VIEIFASIDGEGSRQGLLTTFLRLHDCN-----------IRCSYCDTTYSYGIDSVFTEM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRG------------ 111
V ++AD+IE +TGGEPLLQ V LI LN+R
Sbjct: 52 TVAEVADVIESL------GNHRITITGGEPLLQEAAVVELIDELNRRKALKIQDSPSSQS 105
Query: 112 -------------------------FEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIK 144
++ +ETNGTI + W K L +
Sbjct: 106 DLTRINDVDKDVDKFDKRKIPNISYYDFNIETNGTIIPSFHRDNVWFTYDYKTPSSLAEE 165
Query: 145 GGQ-ELKLVFPQVNV------SPENYIGFD--------FERFSLQPMDGPFLEENTNLAI 189
++ V + ++ SPE+ + + P+ G + I
Sbjct: 166 SMNIDIFKVATERDLIKFVVGSPEDLDCMRRIISKYSTVAQIYVSPVWGQIEAAS---II 222
Query: 190 SYCF--QNPKWRLSVQTHKF 207
Y R +Q HKF
Sbjct: 223 DYMKTYNLQNVRFQLQIHKF 242
>gi|317473656|ref|ZP_07932945.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
gi|316898946|gb|EFV20971.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
Length = 173
Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
M+++ I E F+++ GEG AGR+++F R GCNL C +CDT + +
Sbjct: 1 MEVFKIAESFVSINGEGKKAGRLSMFIRLRGCNLN-----------CSYCDTKWAISKKG 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVET 118
+ +++ +++E LTGGEPLL ++ + E+ +ET
Sbjct: 50 EAELMTAAEVSQMVKE------SGVDLVTLTGGEPLLDENISELIGGILSLPKMELEIET 103
Query: 119 NGTIEPPQ 126
NG+I
Sbjct: 104 NGSIPIRP 111
>gi|169831395|ref|YP_001717377.1| radical SAM domain-containing protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169638239|gb|ACA59745.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 246
Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 76/243 (31%), Gaps = 40/243 (16%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--QCRFCDTDFVGIQGTKG 62
+ E+F ++QGEG + G +F RF+GCNL A +CR +T +
Sbjct: 6 PVTEVFTSVQGEGPYLGCRHMFVRFAGCNLQCAYCDTPAPAGRRCRVENTPGRRVFTWYP 65
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA--LNKRGFEIAVETNG 120
V L D LTGGEPLL D + G +ETNG
Sbjct: 66 NPVTVQMLLDWTSRAV---APHFHALALTGGEPLLHADFLESFLVGFREYGGRCYLETNG 122
Query: 121 TIEPPQGI-----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG---------F 166
T+ D + + K + F + ++
Sbjct: 123 TLPEAMKRLARLVDIVAMDVKLPSMTGFPFPEAEHRRFLEAIGPAHAFVKVVVGSETTDA 182
Query: 167 DFERFS-------------LQPMDGPFL------EENTNLAISYCFQNPKWRLSVQTHKF 207
+ + LQP+ E + + P R+ Q H+
Sbjct: 183 ELDAVCALLSAGAGRTMLVLQPVTPVSGVRPAPPERLLEMQERCLARLPDVRVIPQVHRT 242
Query: 208 IGI 210
+G+
Sbjct: 243 LGV 245
>gi|322378511|ref|ZP_08052961.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1]
gi|322380522|ref|ZP_08054704.1| organic radical activating enzyme [Helicobacter suis HS5]
gi|321147051|gb|EFX41769.1| organic radical activating enzyme [Helicobacter suis HS5]
gi|321149072|gb|EFX43522.1| hypothetical protein HSUHS1_0174 [Helicobacter suis HS1]
Length = 246
Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGT 60
+ E F +LQGEG G+ +VF R GCN G + S + CD+ +
Sbjct: 3 LPLVETFYSLQGEGSCVGQPSVFIRLGGCNFKCVGFGVKSMIDSKEVVGCDSAYAVYPNA 62
Query: 61 KGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEIA 115
K + +L +E + VLTGGEP L + + +Q L+ RG I
Sbjct: 63 KWSYLKSAQELLTRLEPLIYPSTLP--HIVLTGGEPSLHFNNLILLEALQVLHTRGHTIW 120
Query: 116 VETNG----TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
VE+NG + P +SPK K K + +N + E F
Sbjct: 121 VESNGSVFFEFKAPLNTLHFTLSPKLAFAQTFKDYS--KPLQNILNHAKEIVFKF 173
>gi|115378070|ref|ZP_01465248.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1]
gi|115364909|gb|EAU63966.1| radical activating enzyme [Stigmatella aurantiaca DW4/3-1]
Length = 194
Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 43/205 (20%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
F R +GC+L +C +CD++F G R Q+ + ++
Sbjct: 3 CAFVRLTGCHL-----------RCTYCDSEFAFR---GGTRMPNAQVVEQVKALRT---- 44
Query: 84 EGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSP 135
+TGGEPLLQ V PL++AL G + +ET+G I+ + +D S
Sbjct: 45 --PMVEITGGEPLLQPGVYPLMEALLAEGLTVLLETSGAIDVRLVPPAVHKIVDMKTPSS 102
Query: 136 KAGCDLKIKGG------QELKLVFPQVNVSPENYIGFDFERF-------SLQPMDGPFLE 182
++ E+K V + +
Sbjct: 103 GESDRNDVRNFSSMNARDEMKFVIGSREDYEWSKALIAEHGLATKPFAMLFSTVFDKLHP 162
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKF 207
LA R +Q HK+
Sbjct: 163 R--ELAEWVIADRLPVRFQLQMHKY 185
>gi|317014342|gb|ADU81778.1| hypothetical protein HPGAM_04815 [Helicobacter pylori Gambia94/24]
Length = 251
Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 14/198 (7%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRL---SAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE---- 113
+ + LIE + +LTGGEP L + P++ ++ + +
Sbjct: 61 KFQTSWDYYSEPKPLIERLVNLAPNYKDFDLILTGGEPSLYFNNPILLSVLEHFYHKKIP 120
Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ VE+NG+I + L QE K + + + N+ +F L
Sbjct: 121 LFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNHAKSVHFKFVL 180
Query: 174 QPMDGPFLEENTNLAISY 191
+ T I
Sbjct: 181 ------ESQNATQSIIEI 192
>gi|18977649|ref|NP_579006.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638]
gi|18893373|gb|AAL81401.1| hypothetical protein PF1277 [Pyrococcus furiosus DSM 3638]
Length = 254
Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 52/259 (20%), Positives = 88/259 (33%), Gaps = 69/259 (26%)
Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------- 52
EIF + QGEGG GR +F RF+GC+L +C +CD+
Sbjct: 8 EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56
Query: 53 DFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQA 106
+ G++ N + ++I+ + TGGEP LQ+ L++
Sbjct: 57 KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116
Query: 107 LNKRGFEIAVETNGTIEP----------PQGIDWICVSPKAGCDLKIKGGQEL------- 149
+ G++ +ET+G +D S A D + E+
Sbjct: 117 AKELGYDNFLETHGGHPHLIKKIAYLTDYASVDIKDESANATKDWRKLVVNEIASTKILK 176
Query: 150 --------KLVFPQ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY------ 191
KLV + NV + +QP + + + +
Sbjct: 177 EAGAKVYVKLVVTRETRIENVRWYAEMLKGIAPMVIQPKEPMDMP--IKKVMDFYNVAAK 234
Query: 192 CFQNPKWRLSVQTHKFIGI 210
LS Q HK++G+
Sbjct: 235 IMGKKNVSLSFQVHKYLGV 253
>gi|109947611|ref|YP_664839.1| hypothetical protein Hac_1076 [Helicobacter acinonychis str.
Sheeba]
gi|109714832|emb|CAJ99840.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 230
Score = 95.3 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 8/180 (4%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQ 58
+ E F +LQGEG G+ ++F R GCNL G + CD+ +
Sbjct: 1 MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHP 60
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPL----IQALNKRGFE 113
K ++ LIE + +LTGGEP L + P+ ++ +++
Sbjct: 61 KFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIP 120
Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ VE+NG+I + L + +E K + + + + +F L
Sbjct: 121 LFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRINLKALQNILDNAKSVHFKFVL 180
>gi|85707657|ref|ZP_01038723.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
NAP1]
gi|85689191|gb|EAQ29194.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
NAP1]
Length = 245
Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 56/179 (31%), Gaps = 20/179 (11%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---------IQ 58
EIF ++QGEG G F R S CNL C +CDT +
Sbjct: 15 EIFASIQGEGPSMGTPVAFIRLSRCNL-----------ACTWCDTAYTWRFEGDNRPHRD 63
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
G + R + + V+TGGEPL+Q E+ +ET
Sbjct: 64 GIEYERKANQVALSPAKAAAKIAVLGQKRLVITGGEPLMQCGPLADMLAILPDIEVEIET 123
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
NGT ID L G + + F+ +P D
Sbjct: 124 NGTTRASAHIDIRVDQYNVSPKLAHSGNDASLALIAERLDDYAADPRAFFKFVIAEPGD 182
>gi|323701737|ref|ZP_08113408.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
gi|323533273|gb|EGB23141.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
Length = 247
Score = 94.6 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 89/261 (34%), Gaps = 68/261 (26%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV----- 55
M + ++EIF ++QGEG + G VF RF+GCN W C +CDT
Sbjct: 1 MPVAYLQEIFSSVQGEGPYVGCRQVFIRFAGCN-WC----------CAYCDTPTEPQPAT 49
Query: 56 -GIQGTKGGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLI 104
++ + G R Q+A++I + + LTGGEPLL LI
Sbjct: 50 CVVEKSPGYRDFVNLANPMTPGQVAEIIRQYYNLSWHHS--VSLTGGEPLLHTEYIKDLI 107
Query: 105 QALNKRGFEIAVETNGTIEP-----PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
+ L I +ETNGT+ GID I + K +L F +V
Sbjct: 108 KHLPSTRRGIFLETNGTLPDRLTEVITGIDIISMDVKLSSATGTPTPWDLHRHFIKVARQ 167
Query: 160 PENYIGF----------------------DFERFSLQPMDGPFLEEN---------TNLA 188
E Y+ LQP+ A
Sbjct: 168 RELYVKIVVTAETKVEELQKAGELLQELAPQAVLILQPVTPNCGVIAPPVSRVLYLQEQA 227
Query: 189 ISYCFQNPKWRLSVQTHKFIG 209
+ R+ QTH +G
Sbjct: 228 LKIIK---NVRVIPQTHLMMG 245
>gi|149187035|ref|ZP_01865342.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
SD-21]
gi|148829324|gb|EDL47768.1| coenzyme PQQ synthesis protein, conjectural [Erythrobacter sp.
SD-21]
Length = 244
Score = 94.6 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 73/233 (31%), Gaps = 47/233 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---------Q 58
EIF ++QGEG GR F R S CNL C +CDT +
Sbjct: 14 EIFASVQGEGPSVGRPVAFMRLSRCNL-----------ACVWCDTAYTWHFEGDNRPHRD 62
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
G R D E + V+TGGEPLLQ + +ET
Sbjct: 63 GVTFERKANQVTLDEEEVAARITQLGQDRLVITGGEPLLQAQALAKLLDLLPDISVEIET 122
Query: 119 NGTIEPPQGIDW----ICVSPKAGCDLK-------IKGGQE--------LKLVFPQVNVS 159
NGT + P +D VSPK + K V +
Sbjct: 123 NGTTKAPPRLDIRIDQFNVSPKLAHSGNPADLALLPERLDAYATDPRAFFKFVIADPSDV 182
Query: 160 PE-----NYIGFDFERFSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E + F L P D L C ++ +R+S + H
Sbjct: 183 DEVLALRDRYRFRSGHVFLMPEGTDSETLRAREKWLAELCLKH-GFRMSDRLH 234
>gi|95929552|ref|ZP_01312294.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
gi|95134249|gb|EAT15906.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
Length = 251
Score = 94.2 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 53/251 (21%), Positives = 79/251 (31%), Gaps = 63/251 (25%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
+ E+F ++QGEG G VF R +GCNL C +CDTDF
Sbjct: 9 LPVVELFSSIQGEGPLVGCRQVFLRLAGCNLD-----------CAYCDTDFQPSKCARIE 57
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY----CVLTGGEPLLQVDVPLIQA-LNK 109
+ + + + T + + + LTGGEPLL +
Sbjct: 58 TQPGSEQFLYWENPLESTRLLAHLSTWKHQQPHLHHSLSLTGGEPLLHAEALKAWLPQLS 117
Query: 110 RGFEIAVETNGTIEP-----PQGIDWICVSPK----AGCDLKIKGGQELKLVFPQ----- 155
F I +ETNGT+ ++W+ + K G E V +
Sbjct: 118 TLFPIQLETNGTLPQALQLVIDQVEWVVMDIKLESQTGEPTPWAQHGEFLRVAVKRSCCV 177
Query: 156 -------------VNVSPENYIGFDFERFSLQPM--------DGPFLEENTNLAISYCFQ 194
V + LQP +G L + L Q
Sbjct: 178 KLVVGPGTSESELVQAAQLVRDNAPDSEVFLQPCTVAGQCSLNGRILLQWQALIAE---Q 234
Query: 195 NPKWRLSVQTH 205
+ R+ QTH
Sbjct: 235 GVRVRVVPQTH 245
>gi|57641133|ref|YP_183611.1| organic radical activating protein [Thermococcus kodakarensis KOD1]
gi|57159457|dbj|BAD85387.1| organic radical activating enzyme, radical SAM superfamily
[Thermococcus kodakarensis KOD1]
Length = 253
Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 67/258 (25%)
Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT----DFVGIQ 58
E+F + QGEGG GR +F RF+GC+L C +CD+ D +
Sbjct: 7 EVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------HCAWCDSREYIDASRVS 55
Query: 59 GTKGG----------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106
+ R N + +++E + TGGEP LQ + L++
Sbjct: 56 SWRYEVKPFTGRFEYRPNPASVEEVVEAVLRLDTGDIHSISYTGGEPTLQVKPLMALMER 115
Query: 107 LNKRGFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQELKLV---- 152
+ + GF+ +ET+G + +D S KA D K +E++ +
Sbjct: 116 MKELGFDNFLETHGGLPELIRDVAPLTDYASVDIKDESAKATEDWKGLVLREVESIRILK 175
Query: 153 ---------------FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY-----C 192
NV + +QP + + + L Y
Sbjct: 176 EAGAKTYAKLVVTSETKVENVQWYASLLKGLAPLVIQPREPIEVSQA-KLMEFYREAARI 234
Query: 193 FQNPKWRLSVQTHKFIGI 210
LS Q HK++ +
Sbjct: 235 MGRKNVGLSFQVHKYLNV 252
>gi|292669396|ref|ZP_06602822.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
gi|292648957|gb|EFF66929.1| radical SAM domain protein [Selenomonas noxia ATCC 43541]
Length = 243
Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 60/254 (23%), Positives = 88/254 (34%), Gaps = 69/254 (27%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-------DFVGIQ 58
I EIF ++QGEG + G +F R GCNL C +CDT ++
Sbjct: 5 IIEIFSSIQGEGKYVGCRQIFVRLEGCNLD-----------CTYCDTENEIGRHPHCMVE 53
Query: 59 GTKG--------GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
G + + A++I I G+ +TGGEPLL VP I+ L
Sbjct: 54 EDAGSHALISYENPLSAQRTAEIIAR--IVGDVPHHSLSMTGGEPLLH--VPFIRELAAH 109
Query: 111 -GFEIAVETNGT-----IEPPQGIDWICVSPKAGCDLKIKGGQEL---------KLVFPQ 155
+ +ETNGT E ID I + K L + K V+ +
Sbjct: 110 VHLPLFLETNGTLDQALAECIDCIDIISMDIKLPDVLSVPVWDAHARFLAVARAKDVYVK 169
Query: 156 VNVSPENYIG------------FDFERFSLQPM---------DGPFLEENTNLAISYCFQ 194
+ V+ E LQP+ L LA+ +
Sbjct: 170 IVVAAETADDDIVTAARIVADTAPETLLILQPVTPYGGCTAPTPEHLLAFQRLALRHVSD 229
Query: 195 NPKWRLSVQTHKFI 208
R+ QTH+ +
Sbjct: 230 ---VRIIPQTHRMM 240
>gi|319789546|ref|YP_004151179.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
gi|317114048|gb|ADU96538.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
Length = 219
Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 87/239 (36%), Gaps = 50/239 (20%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
+ +I E F+++QGEG G A F R C S CRFCDT + +
Sbjct: 1 MITICETFVSVQGEGLTVGTPAFFIRTGKC-----------SVGCRFCDTKYSW---SSR 46
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG---FEIAVETN 119
R +V++L E + ++TGGEPL + ++P + KR ++ VET
Sbjct: 47 ERKSVEELVAEAERA------GFQTVIVTGGEPLEEEELPHLLTALKRAKPVKQVIVETC 100
Query: 120 GTIEPPQGIDWI--CVSPKAGCD------------LKIKGGQELKL------VFPQVNVS 159
G + +SPK LK ELK ++
Sbjct: 101 GHTFRDDLPRNVRLVLSPKPPSMGVPFPFESVKAFLKHYREVELKFTLFNGEDLKRIKEF 160
Query: 160 PENYIGFDFERFSLQPMDGPFLE--ENTNLAISYC-----FQNPKWRLSVQTHKFIGIR 211
E G QP++ P + + + +R+ Q HK IG++
Sbjct: 161 IEESEGLLPSPVVFQPLETPLEDYGKTCKRVAQMLLSDGELRKLPFRVIPQVHKLIGLK 219
>gi|148264177|ref|YP_001230883.1| radical SAM domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146397677|gb|ABQ26310.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
Length = 250
Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/250 (23%), Positives = 88/250 (35%), Gaps = 59/250 (23%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT------DFVGIQGTK 61
E+F ++QGEG G +F R GCN C +CDT +F ++GT
Sbjct: 10 ELFSSIQGEGMLVGLRQIFIRLCGCNFT-----------CNYCDTESNVSVEFCQMEGTP 58
Query: 62 GGRYNVDQLADLIEEQ-------WITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF- 112
G R + + E+ W G + +TGGEPLL ++ R F
Sbjct: 59 GRRDFIQVKNPVALERLTCLISGWQRGWPGIHHSISITGGEPLLHYELLQEWLPVLREFL 118
Query: 113 EIAVETNGTIEPPQGIDW---------ICVSPKAGCDLKIKGGQELKLVFPQVNV----- 158
I +ETNG + I + +GC K + + NV
Sbjct: 119 PIYLETNGVLHKELSQVISHIDHVGMDIKIPSTSGCADLWKDHEAFLRIAAAKNVFVKAV 178
Query: 159 ---SPENYIGFDFERF----------SLQPMDGPFLE------ENTNLAISYCFQNPKWR 199
+ E++ LQP+ P + + L + + R
Sbjct: 179 IGNNTEDWEIIKASEIIASIDNAIPLILQPLTNPDGKIDIAPVKMLELQETASIFLKEVR 238
Query: 200 LSVQTHKFIG 209
+ QTHKFIG
Sbjct: 239 IIPQTHKFIG 248
>gi|213617522|ref|ZP_03372348.1| radical SAM domain protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 59
Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
Y I E+F TLQGEG G A+F R GC + C +CDT +
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHTWDK 46
>gi|158335495|ref|YP_001516667.1| radical SAM domain-containing protein [Acaryochloris marina
MBIC11017]
gi|158305736|gb|ABW27353.1| radical SAM domain protein [Acaryochloris marina MBIC11017]
Length = 256
Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/257 (21%), Positives = 86/257 (33%), Gaps = 64/257 (24%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT----- 60
+ EIF +QGEG + G +F RF GC+L +C FCD+ +
Sbjct: 9 LVEIFSAIQGEGLNVGTRQIFIRFGGCDL-----------RCHFCDSAHTWTPKSSCQIE 57
Query: 61 ------KGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQ---VDVPLIQALNK 109
RY I E + G + LTGGEPLLQ + L +
Sbjct: 58 KTPGCRDFARYPNPVTLPQILEWVQDQDLPGMHDSISLTGGEPLLQVAFLQNLLPLLRQQ 117
Query: 110 RGFEIAVETNGTIE---------------------------PPQGIDWICVSPKAGCDLK 142
I +ET G PQ + + +A D+
Sbjct: 118 TSLPIYLETGGHHPEALDPLLPHLDSVGMDLKLPSVSGENHWPQHRQSLELCHQAHIDVF 177
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERF-SLQPMDG-----PFLEENTNLAISY---CF 193
K K +P++ + + LQP+ P + +++
Sbjct: 178 CKLIISEKTDWPELVQAAQMVADISPTVLMFLQPVTPLTAQHPVQPPTPDQVLAWQGQLK 237
Query: 194 Q-NPKWRLSVQTHKFIG 209
Q + R+ QTHKF+G
Sbjct: 238 QMGRQIRVVPQTHKFLG 254
>gi|118577062|ref|YP_876805.1| organic radical activating enzyme [Cenarchaeum symbiosum A]
gi|118195583|gb|ABK78501.1| organic radical activating enzyme [Cenarchaeum symbiosum A]
Length = 238
Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 57/244 (23%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
EIF +++GEG G +F R +GC C +CDT+ + G + +
Sbjct: 8 EIFTSIEGEGVLFGTKTLFVRLAGCPF-----------GCYYCDTEEA-LPADSGEEHTM 55
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVETNGTIEP- 124
++ +I++ + + TGGEPL+Q + A + G +E++
Sbjct: 56 EEACRMIDDAIQPNTYKVNF---TGGEPLVQHEAVAGMARHVQSSGVPTYLESSCYDADR 112
Query: 125 ----PQGIDWICVSPKAGCDLKIKGGQELKLV-------FPQVNVSPENYIGF------- 166
ID + V K ++ GQ ++V V++ E YI
Sbjct: 113 FRTVIPHIDIVKVEFKTADSAFVEEGQHPRIVRSATECLRAAVDLGRETYIKVVAGEGTK 172
Query: 167 ------------------DFERFSLQPMDGPFLEENTNLAISYCFQNP---KWRLSVQTH 205
D F +QP+ GP L + P K R+ Q H
Sbjct: 173 PGPFAELVGGIFSEVSNDDISGFVIQPVTGPGAPTLDALLELHDIVRPYSNKVRVIPQLH 232
Query: 206 KFIG 209
K IG
Sbjct: 233 KAIG 236
>gi|39996820|ref|NP_952771.1| radical SAM domain-containing protein [Geobacter sulfurreducens
PCA]
gi|39983708|gb|AAR35098.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
gi|298505829|gb|ADI84552.1| 7-carboxy-7-deazaguanine synthase [Geobacter sulfurreducens KN400]
Length = 250
Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/251 (21%), Positives = 87/251 (34%), Gaps = 61/251 (24%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------ 61
E+F ++QGEG G VF RF GCNL C +CDT G
Sbjct: 10 EVFSSVQGEGMLIGLRQVFIRFRGCNLT-----------CDYCDTP-AGTPAEPCRIEQT 57
Query: 62 ---------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA-LNKRG 111
++D++A L+E +TGGEPLL+ D+ + + +
Sbjct: 58 PGRRDFVPADNPVSLDRVAALVEGWQRGWPGVHDSISITGGEPLLRHDILMQWLPVLREH 117
Query: 112 FEIAVETNGTIEPPQGIDW---------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
+ +ETNG + G+ I + +GC ++ + +
Sbjct: 118 LPVYLETNGVMHAALGLVINHVDIIGMDIKIPSTSGCTDLWDDHRQFLEIANTRRAFIKI 177
Query: 163 YIGFDFE------------------RFSLQPMD------GPFLEENTNLAISYCFQNPKW 198
+G + E LQP+ G + L C +
Sbjct: 178 VVGEETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELACRYLAEV 237
Query: 199 RLSVQTHKFIG 209
R+ QTH+F+G
Sbjct: 238 RIIPQTHRFMG 248
>gi|157738262|ref|YP_001490946.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018]
gi|157700116|gb|ABV68276.1| radical SAM domain protein [Arcobacter butzleri RM4018]
Length = 254
Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 27/214 (12%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWS---GREQDRLSAQCRF-CDTDFVG- 56
+ I EIF T+QGEG G ++F RF CN G + S ++ CD+ +
Sbjct: 1 MLEINEIFGPTIQGEGKLVGTPSIFIRFGKCNFSCTGFGVVYETPSGIKKYACDSYYAVD 60
Query: 57 --IQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVD-VPLIQALN---K 109
+ T + + + ++ T + V+TGGEPLL + + L +
Sbjct: 61 KEFKDTWTKYQSYNDIVAEVDNLISTYNYNYKIDIVITGGEPLLYWNKKEFQKLLKHYIE 120
Query: 110 RGFEIAVETNGTIEPPQGIDW-----ICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN-Y 163
G ++ +ETN ++ D+ +S K L+ + K ++ + ++ Y
Sbjct: 121 NGHKVTIETNASLNINFEFDYQKEILFSMSVKLSNSLEPLNKRINKNTLVKILENTKDSY 180
Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
+ F + L + I PK
Sbjct: 181 MKFVIGKDFL--------NKAKTEIIEILKDIPK 206
>gi|315636551|ref|ZP_07891787.1| radical SAM domain protein [Arcobacter butzleri JV22]
gi|315479200|gb|EFU69897.1| radical SAM domain protein [Arcobacter butzleri JV22]
Length = 191
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 3 LYSIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSG-----REQDRLSAQCRFCDTDFVG 56
+ I EIF T+QGEG G ++F RF CN E +C CD+ +
Sbjct: 1 MLEINEIFGPTIQGEGKLVGTPSIFIRFGKCNFSCTGFGVIYETPSGIKKCA-CDSYYAV 59
Query: 57 ---IQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVD-VPLIQALN--- 108
+ T + + + ++ T + V+TGGEPLL + + L
Sbjct: 60 DKEFKDTWTKYQSYNDIVAEVDNLISTYNYNYKIDIVITGGEPLLYWNKKEFQKLLKHYI 119
Query: 109 KRGFEIAVETN 119
+ G ++ +ETN
Sbjct: 120 ENGHKVTIETN 130
>gi|220910548|ref|YP_002485859.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
gi|219867159|gb|ACL47498.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
Length = 268
Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/258 (20%), Positives = 84/258 (32%), Gaps = 64/258 (24%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------- 57
+ E+F +QGEG + G +F RF+ C+L +C FCD+
Sbjct: 20 PLVEVFSAIQGEGLNVGTRQIFIRFAQCDL-----------RCHFCDSAHTWYSRPTCQI 68
Query: 58 QGTKGGR----YNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQ---VDVPLIQALN 108
+ + G R Y D + + LTGGEPLLQ + L Q
Sbjct: 69 EQSPGQRDFQTYPNPVTIDQLLAWVKDLHGPHLHDSISLTGGEPLLQSQFLQRLLPQLRE 128
Query: 109 KRGFEIAVETNGTIE---------------------------PPQGIDWICVSPKAGCDL 141
G + +ET G +++ AG ++
Sbjct: 129 TIGLPLYLETGGHRPQELQQVLAWLDLVGMDIKLPSASGENYWTAHAEFLRCCHTAGVEV 188
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQPMDG----PFLEENTNLAI----SYC 192
K + ++ + E D LQP+ P + T + + C
Sbjct: 189 FCKLILSQQTEAEELEQTTELIASIDPAIPLILQPVTPLGNKPQILAPTPAQVLHWQALC 248
Query: 193 FQNPK-WRLSVQTHKFIG 209
K R+ QTHK IG
Sbjct: 249 KTRLKQVRVIPQTHKMIG 266
>gi|254412243|ref|ZP_05026018.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
gi|196181209|gb|EDX76198.1| radical SAM domain protein [Microcoleus chthonoplastes PCC 7420]
Length = 269
Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 56/264 (21%), Positives = 86/264 (32%), Gaps = 74/264 (28%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-------- 56
+ E+F +QGEG + G +F R + C+L +C FCD+
Sbjct: 19 RLIELFSAIQGEGRNVGTRQLFIRLALCDL-----------RCHFCDSQNTWAVPNLASV 67
Query: 57 -------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-- 107
T VDQL +E Q G E +TGGEPLLQ P ++
Sbjct: 68 EQTPGHRDFETHPNPVTVDQLLAWVERQNYPGLHES--ISITGGEPLLQ--APFLREFLP 123
Query: 108 ---NKRGFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQE------ 148
++ G I +ET G G+D S
Sbjct: 124 VVQHRTGLPIYLETGGHRPEQLAQILPYLNSIGMDMKLPSVSGEECWHAHRQFLQVCGDA 183
Query: 149 -----LKLVFPQVNVSPENYIGFDFER-------FSLQPMDGPFLEENTNLA-------I 189
+KL+ Q + E + + LQP+ + + +
Sbjct: 184 DVEVFVKLIIAQTTNTAELELAAELVAACNPSIPVFLQPVTPLAQPHHAPMIPPTPTQVL 243
Query: 190 SY---CFQNPK-WRLSVQTHKFIG 209
+ ++ K R+ QTHK IG
Sbjct: 244 EWQALMKRHLKSVRVIPQTHKMIG 267
>gi|328885752|emb|CCA58991.1| Queuosine Biosynthesis QueE Radical SAM [Streptomyces venezuelae
ATCC 10712]
Length = 238
Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 3 LYSIKEIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
+ E F T+QGEG G A F R + CNL C CDT + T+
Sbjct: 10 RLRVSEKFGGTVQGEGPSTGVPACFIRLALCNL-----------ICSPCDTPYTW-DTTR 57
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
++ E ++ V+TGGEPL+Q+ L++ L G + +ETN
Sbjct: 58 FDLRKEAHYENVEELLAWALDQPEDLVVVTGGEPLIQMAGLTELVKGLRAAGRTVEIETN 117
Query: 120 GTIEPPQ----GIDWICVSPKAGC 139
GTI P + + VSPK
Sbjct: 118 GTIAPSEALVAAGPYFNVSPKLSR 141
>gi|17986377|ref|NP_539011.1| radical SAM domain protein ExsD [Brucella melitensis bv. 1 str.
16M]
gi|17981967|gb|AAL51275.1| exsd protein [Brucella melitensis bv. 1 str. 16M]
Length = 243
Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 15/165 (9%)
Query: 5 SIKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
I EIF T+QGEG G VF R GC+ + +CD ++
Sbjct: 8 RISEIFGPTIQGEGVLIGEPTVFVRTGGCD-----------YRWAWCDNLHA-VESRFRH 55
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT-- 121
+ + + E +K L+GG P +Q LI+ G+ A+ET G+
Sbjct: 56 EWKPMSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVA 115
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ +D + +SPK L P + F
Sbjct: 116 KDWFSRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 160
>gi|325279462|ref|YP_004252004.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM
20712]
gi|324311271|gb|ADY31824.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712]
Length = 267
Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 83/226 (36%), Gaps = 45/226 (19%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+QGEG G ++F R +GCNL + + CD+ + Q + +V+ +
Sbjct: 33 TVQGEGKLCGIPSLFVRLAGCNLQCHWQTSDGLS--SPCDSAYAAYQLKDTRQVSVEAIY 90
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ---VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ + R+ VLTGGEPLLQ + + + F + +ETN T+ P+
Sbjct: 91 TTLLQ----NAGPIRHIVLTGGEPLLQVKELKALCQKLKSDYRFHLTLETNATLFDPELA 146
Query: 129 DWI---CVSPKAGCDL------------------------KIKGGQELKLVFPQVNVSPE 161
+I +SPK + + +LK V+ E
Sbjct: 147 RYIDLFSLSPKLSSSYTGASPLSIQRLNPECIQQYISSARQYQKDFQLKFVYACDEDIDE 206
Query: 162 NYIGF------DFERFSLQPMDG--PFLEENTNLAISYCFQNPKWR 199
+ L P+ G + N + YC +N WR
Sbjct: 207 IQQLLSVLQAWKNDDILLMPLGGTPEIMRRNMRKTLEYCIRN-GWR 251
>gi|332158894|ref|YP_004424173.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2]
gi|331034357|gb|AEC52169.1| hypothetical protein PNA2_1254 [Pyrococcus sp. NA2]
Length = 254
Score = 91.9 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/265 (21%), Positives = 94/265 (35%), Gaps = 67/265 (25%)
Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCD---- 51
M + E+F + QGEGG GR +F RF+GC+L +C +CD
Sbjct: 1 MVKLILAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCFYCDSSQF 49
Query: 52 -------TDFVGIQGTKGG---RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99
T V I+ G + N + ++++ + TGGEP LQ+
Sbjct: 50 LSPLNVKTWRVEIEPFSGKFEYKKNPASVEEVVKVVLSLDTGDIHSISYTGGEPTLQIKG 109
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP----------PQGIDWICVSPKAGCDLKIKGGQEL 149
L+ + GF+ +ET+G +D S KA + K +E+
Sbjct: 110 LRILMDRMKSLGFDNFLETHGGHPNLIREIAELVDYASVDIKDESSKAYGNWKDLVLREV 169
Query: 150 KLVFPQVNVSPENYIGFDFER-------------------FSLQP-----MDGPFLEENT 185
+ + + E Y R +QP + FL +
Sbjct: 170 ESIKILKDAGAEVYAKLVVTRDTKLENVRWYAELLRGLAPLVIQPAEPINISMKFLMKLY 229
Query: 186 NLAISYCFQNPKWRLSVQTHKFIGI 210
N ++ LS Q HK++G+
Sbjct: 230 NE-VARIMGKKNVGLSFQVHKYLGV 253
>gi|48478135|ref|YP_023841.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM
9790]
gi|48430783|gb|AAT43648.1| 6-pyruvoyltetrahydropterin 2'-reductase [Picrophilus torridus DSM
9790]
Length = 249
Score = 91.9 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 48/232 (20%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQ-------------DRLSAQCRF-C 50
+ ++F ++QGEG +AG+ A F RF CNL+ G E+ + S + C
Sbjct: 4 RLVDLFYSIQGEGRYAGKPAFFIRFPECNLFCGLEKPLKPGNYDQEYINNLKSVNAGWVC 63
Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-----VDVPLIQ 105
DT + + G + +++ + D I V TGGEPL+ + +
Sbjct: 64 DTMAQWL--SNGFQIDINDIVDYISRL----SSGSYNIVFTGGEPLINRSNILKIIDAVN 117
Query: 106 ALNKRGFEIAVETNGTIEPPQGIDW-ICVSPKAGCDLKIKGGQE---------------L 149
+ N + + +ETNGT+EP + +S K + +
Sbjct: 118 SKNLKPYIYEIETNGTMEPIEDDSISYNISLKLSGSGMKRSKRINGNIIRKYLLLKNTWW 177
Query: 150 KLVFPQVNVSPE-----NYIGFDFERFSLQPMDGPFLE--ENTNLAISYCFQ 194
K V +N + E + G + P E +N+ I C +
Sbjct: 178 KFVISNINDAMEAIEIMDEYGIKRDSVYFMPAAFSRDELVKNSVEVIEMCKE 229
>gi|78222867|ref|YP_384614.1| radical SAM family protein [Geobacter metallireducens GS-15]
gi|78194122|gb|ABB31889.1| Radical SAM [Geobacter metallireducens GS-15]
Length = 250
Score = 91.9 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 59/249 (23%), Positives = 89/249 (35%), Gaps = 59/249 (23%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI------QGTK 61
E+F ++QGEG G VF RF GCNL C +CDT + T
Sbjct: 10 EVFSSVQGEGMLIGLRQVFVRFRGCNLT-----------CDYCDTPTEITAEPCLVEQTP 58
Query: 62 GGR--------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF- 112
G R +D++ LI+ +TGGEPLL V R
Sbjct: 59 GRRDFVPTANPVALDRIVSLIDGWQRGWPGVHHSISITGGEPLLSHTVLSAWLPELRNIL 118
Query: 113 EIAVETNGTIEPPQGIDW---------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
+ +ETNG + G+ I + +GC + + + NV +
Sbjct: 119 PVYLETNGIMHSVLGLLIDHIDIIGMDIKIPSTSGCTGLWDDHRSFLQIAARKNVFVKII 178
Query: 164 IGFDFERF------------------SLQPMDGP--FLEENTNLAISY----CFQNPKWR 199
+G + E + LQP+ P + N A+ + C + R
Sbjct: 179 VGDETEEWEIIRASELIAAINSHIPLILQPVTEPGGRVGINPVRALEFQEIACRHLDEVR 238
Query: 200 LSVQTHKFI 208
+ QTHKF+
Sbjct: 239 IIPQTHKFM 247
>gi|14590526|ref|NP_142594.1| hypothetical protein PH0635 [Pyrococcus horikoshii OT3]
gi|3257042|dbj|BAA29725.1| 254aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 254
Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 79/271 (29%)
Query: 1 MKLYSIKEIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV 55
M + E+F + QGEGG GR +F RF+GC+L +C +CD+
Sbjct: 1 MVKLILAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDL-----------RCIWCDSSQ- 48
Query: 56 GIQGTKGGRY---------------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
I +K ++ N + ++++ + TGGEP LQ++
Sbjct: 49 FIDASKVKKWRIEVEPFSGRFEYRENPASIDEVVDAILKLDTGDLHSISYTGGEPTLQIE 108
Query: 101 VPL--IQALNKRGFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQE 148
++ + GF+ +ET+G +D S +A D + +E
Sbjct: 109 GLYILMERMKGLGFDNFLETHGGHPELIKRVSYLTDYASVDIKDESARASRDWRGLVLKE 168
Query: 149 L---------------KLVFPQ----VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
+ KLV + NV + ++QP +E ++++
Sbjct: 169 VESIKILKEAGAKVYAKLVVTRETKLENVKWYANLLKGVAPLAIQP------KEPMDISM 222
Query: 190 SYCFQ----------NPKWRLSVQTHKFIGI 210
Y + LS Q HK++ +
Sbjct: 223 EYLMKLYREAARIMGKKNVGLSFQVHKYLKV 253
>gi|315230412|ref|YP_004070848.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus
MP]
gi|315183440|gb|ADT83625.1| queuosine biosynthesis QueE-like protein [Thermococcus barophilus
MP]
Length = 255
Score = 91.5 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/266 (19%), Positives = 85/266 (31%), Gaps = 69/266 (25%)
Query: 2 KLYSIK--EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
Y + EIF + QGEGG GR +F RF+GC+L +C +CD+
Sbjct: 1 MSYRLILAEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCVWCDSRQ 49
Query: 55 --------------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-- 98
G + N L ++++ + TGGEP LQ
Sbjct: 50 FIDASKVLQWRYEIEPFSGEFKYKPNPATLDEVVDVILSLDTGDVHSISYTGGEPTLQIK 109
Query: 99 VDVPLIQALNKRGFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQE 148
L++ ++ GF+ +ET+G +D S +A + E
Sbjct: 110 PLKALMEKSSELGFKNFLETHGGFPERIAEIAHLVDYASVDIKDESARATGAWRDLVMME 169
Query: 149 LKLVFPQVNVSPENYIGFDFER-------------------FSLQPMD-----GPFLEEN 184
++ + + Y + +QP + L E
Sbjct: 170 VESIKILRKAGAKVYAKLVVTKDTKLENIEWYASLLEGSAPLVIQPKEPIDLTQKQLMEF 229
Query: 185 TNLAISYCFQNPKWRLSVQTHKFIGI 210
A LS Q HK++ +
Sbjct: 230 YKAAAK-ILGRENVGLSFQVHKYLNV 254
>gi|34419518|ref|NP_899531.1| conserved hypothetical protein [Vibrio phage KVP40]
gi|34333199|gb|AAQ64354.1| conserved hypothetical protein [Vibrio phage KVP40]
Length = 293
Score = 91.5 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 34/155 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWS-GREQDRLSAQCRF----------------- 49
E+F ++QGEG + G+ ++F RF GCNL G Q+ + + +
Sbjct: 7 EMFYSIQGEGKYTGQASLFFRFWGCNLECHGFGQEDPTNKDTWVLDFKDYDPKANNVTSV 66
Query: 50 ---------CDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
CD+ + + + V + + + E+ + V+TGGEP++
Sbjct: 67 EDLPVWTRGCDSSYTWAKKYAHLASKSEVADVCEAMLEKLPNRVWGDIHWVITGGEPMMN 126
Query: 99 V-----DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ ++ + +ETNGT E
Sbjct: 127 QAQIIEMMNYFIKIDNYPKHVTIETNGTRELKPEF 161
>gi|326388331|ref|ZP_08209927.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM
19370]
gi|326207063|gb|EGD57884.1| radical SAM family protein [Novosphingobium nitrogenifigens DSM
19370]
Length = 248
Score = 91.5 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 67/176 (38%), Gaps = 26/176 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E+F +LQGEG GR +VF R S CNL CR+CDT + +
Sbjct: 14 ELFASLQGEGASLGRPSVFVRLSRCNL-----------ACRWCDTAYTWRFSGDNRPHRD 62
Query: 68 DQLADLIEEQWITGE---------KEGRYCVLTGGEPLLQ-----VDVPLIQALNKRGFE 113
D + Q E V+TGGEPLLQ + ++A N+
Sbjct: 63 DIAFERTANQITADEGDIATRILAFGVPRLVVTGGEPLLQAPALARMIAAVRAGNEA-MH 121
Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
I +ETNG++ P +D + L G + P+ + F+
Sbjct: 122 IEIETNGSVAPTPALDALIDQYNVSPKLAHSGNPADLALIPERLAAWAADPRAYFK 177
>gi|167630604|ref|YP_001681103.1| radical sam domain protein, putative [Heliobacterium modesticaldum
Ice1]
gi|167593344|gb|ABZ85092.1| radical sam domain protein, putative [Heliobacterium modesticaldum
Ice1]
Length = 246
Score = 91.5 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 82/255 (32%), Gaps = 69/255 (27%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---------G 56
+ EI ++ QGEG G VF RF GCNL C +CDT
Sbjct: 10 LVEIMVSAQGEGPWIGCRQVFLRFFGCNLS-----------CSYCDTPGSRGPRPSACRI 58
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQ--VDVPLIQALNKRGF 112
+ +++ + ++ LTGGEPLL LI L +
Sbjct: 59 EKEPGSSLFDLWENPVTVDRVAEYLCHTVPIHSVSLTGGEPLLHVEFIQQLIPLLGAQRP 118
Query: 113 EIAVETNGTIEP-----PQGIDWICVSPKAGCDLKIKGGQ-------------------- 147
++ +ETNGT+ +D++ + K D +
Sbjct: 119 DLYLETNGTLPEQLALIVDDLDYVSMDLKTPLDNHWDLHRLFLRIASRKKGYVKIVITPT 178
Query: 148 -ELKLVFPQVNVSPENYIGFDFERFSLQPMDGP-----------FLEENTNLAISYCFQN 195
L +V + E F LQP+ G + LAI +
Sbjct: 179 TALDVVQRAAAIIEEEAPHFP---LVLQPVTGKTGLPLTVPGHLLNLQGAALAI-----H 230
Query: 196 PKWRLSVQTHKFIGI 210
R+ Q H +GI
Sbjct: 231 RDVRIIPQVHPILGI 245
>gi|254173693|ref|ZP_04880365.1| organic radical activating enzyme, radical SAM superfamily
[Thermococcus sp. AM4]
gi|214032385|gb|EEB73215.1| organic radical activating enzyme, radical SAM superfamily
[Thermococcus sp. AM4]
Length = 253
Score = 91.1 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 52/257 (20%), Positives = 83/257 (32%), Gaps = 65/257 (25%)
Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------- 52
E+F + QGEGG GR +F RF+GC+L C +CD+
Sbjct: 7 EVFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLN-----------CAWCDSREYIDASRVS 55
Query: 53 --DFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQA 106
+ T Y N L +++E + TGGEP LQ L++
Sbjct: 56 RWRYEVEPFTGKFEYRPNPASLDEVVEAVTRLDTGDIHSISYTGGEPTLQVKPLKALMEE 115
Query: 107 LNKRGFEIAVETNGTIEP---------------------PQGIDWICVSPKAGCDLKIKG 145
+ GF+ +ET+G + DW + + ++I
Sbjct: 116 MKSLGFDNFLETHGGLPELIREVAHLTDYASVDIKDETAKATEDWRSLVLREVESIRILK 175
Query: 146 GQELKLVFPQV--------NVSPENYIGFDFERFSLQPMDGPF--LEENTNLAIS--YCF 193
K+ V NV + +QP + E+ L
Sbjct: 176 EAGAKVYAKLVVTSETKLENVRWYAELLRGLAPLVIQPREPIEIGQEKLMELYREAALIL 235
Query: 194 QNPKWRLSVQTHKFIGI 210
LS Q HK++ +
Sbjct: 236 GRKNVGLSFQVHKYLNV 252
>gi|298491364|ref|YP_003721541.1| radical SAM domain-containing protein ['Nostoc azollae' 0708]
gi|298233282|gb|ADI64418.1| Radical SAM domain protein ['Nostoc azollae' 0708]
Length = 265
Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/270 (18%), Positives = 77/270 (28%), Gaps = 83/270 (30%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT---- 60
+ E+F +QGEG + G +F RF C+L +C FCD+ +
Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFGLCDL-----------RCHFCDSAHTWDAPSLCKI 60
Query: 61 -----------KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-----VDVPLI 104
L +E Q + + LTGGEPLL +P +
Sbjct: 61 ELSPGLRDFEMHSNPIPPATLIKWVERQNLPFLHDS--ISLTGGEPLLHAPFLAQFLPEV 118
Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVS--------PKAGCDLKIKGGQELKLVFPQV 156
+A I +ET G + + P + +E + +
Sbjct: 119 RAQ--TNLPIYLETGGHRPDQLAMILPYLDSVGMDLKLPSVSGETHWTEHKEFLQICFEA 176
Query: 157 NVSP---------------ENYIGFDFER-----FSLQPM-----DGPFLE--------- 182
N+ E E LQP+ F
Sbjct: 177 NLDIFVKIIVSQRTDPGELERSALLVAEVGQDIPIFLQPVTPLAESQQFSSVPVEAPAPQ 236
Query: 183 ---ENTNLAISYCFQNPKWRLSVQTHKFIG 209
E L + + R+ QTHK +
Sbjct: 237 QVLEWQALMKKFVK---QVRVIPQTHKMLN 263
>gi|56963892|ref|YP_175623.1| organic radical activating enzyme [Bacillus clausii KSM-K16]
gi|56910135|dbj|BAD64662.1| organic radical activating enzyme [Bacillus clausii KSM-K16]
Length = 217
Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 48/223 (21%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R GC+ +CR+CD+ F K + +++ IE
Sbjct: 2 IGQKTMFVRTGGCD-----------YRCRWCDSAFTWDGSEKSEPLSAEEI---IERLDS 47
Query: 80 TGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNG--TIEPPQGIDWICVSPK 136
E + ++GG P + L+ LN++G A+ET G +D + VSPK
Sbjct: 48 LCENGYSHVTISGGNPAIHKGIGELVALLNEKGVATAIETQGSIFQCWINRVDEVTVSPK 107
Query: 137 AGCDLKIKGGQELKLVFPQV------------NVSPENYIGFDFER-----FSLQPMDGP 179
+L L Q+ + + Y +R F LQ +
Sbjct: 108 PPSSGMETDWTKLDLFLQQLQAPAVSLKVVVFDDADYQYAKHVHKRYPTVPFYLQTGNED 167
Query: 180 FLEE-----------NTNLAISYCFQNP---KWRLSVQTHKFI 208
F E+ + + R+ Q H ++
Sbjct: 168 FAEKEDPRFLEKRMGAYEALVEKALADKEMNNVRVLPQLHTWL 210
>gi|325294503|ref|YP_004281017.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064951|gb|ADY72958.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 224
Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 52/238 (21%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I E+F +LQGEG G + F R SGC S C++CDT + KG +
Sbjct: 7 ISELFTSLQGEGLDLGAPSFFIRISGC-----------SIGCKYCDTKYSW---KKGKLW 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNGTI 122
++D L + + I ++TGGEP+ + ++ ++ + +I +ET G I
Sbjct: 53 DIDSLVKEVLKSKI------PEVIVTGGEPVEEKNLSILIKRLSDLETVRKITLETCGHI 106
Query: 123 EPPQGID---WICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS---- 172
I +SPK G D + ++ + QV + Y D E
Sbjct: 107 FRDDLKYPKLKIVLSPKPPTMGVDFPTETLEKFLTTYEQVYIKFAAYDQKDLEVIKEFAY 166
Query: 173 -----------LQPMDGPFLEENT--NLAISYCFQNPKW------RLSVQTHKFIGIR 211
+QP++ PF + + + K+ ++ Q HK IG++
Sbjct: 167 KNKNLIRAPIVIQPLEVPFEDYSYTSKRIFELVISDRKFINDFEIKIIPQIHKLIGLK 224
>gi|240103382|ref|YP_002959691.1| Radical SAM protein [Thermococcus gammatolerans EJ3]
gi|239910936|gb|ACS33827.1| Radical SAM protein [Thermococcus gammatolerans EJ3]
Length = 253
Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 90/266 (33%), Gaps = 70/266 (26%)
Query: 1 MKLYSIK-EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-- 52
MKL I E+F + QGEGG GR +F RF+GC+L C +CD+
Sbjct: 1 MKL--IMAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDLN-----------CAWCDSRE 47
Query: 53 ----------DFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-- 98
+ T Y N +L D+++ + TGGEP LQ
Sbjct: 48 YIDPSRVSRWRYEVEPFTAKFEYKPNPAELEDVVDAVLRLDTGDIHSISYTGGEPTLQVK 107
Query: 99 VDVPLIQALNKRGFEIAVETNGTIEP---------------------PQGIDWICVSPKA 137
L++ + GF+ +ET+G + DW + +
Sbjct: 108 PLKALMERMKSLGFDNFLETHGGLPELIEEVAPLTDYASVDIKDETARATEDWRSLVLRE 167
Query: 138 GCDLKIKGGQELKLVFPQV--------NVSPENYIGFDFERFSLQP-----MDGPFLEEN 184
++I +K+ V NV + +QP + L +
Sbjct: 168 VESIRILREAGVKVYAKLVVTPETKIENVRWYAELLKGLAPLVIQPREPIEICQRRLMDL 227
Query: 185 TNLAISYCFQNPKWRLSVQTHKFIGI 210
A + LS Q HK++ +
Sbjct: 228 YREA-ALILGRKNVGLSFQVHKYLNV 252
>gi|298675035|ref|YP_003726785.1| radical SAM domain-containing protein [Methanohalobium evestigatum
Z-7303]
gi|298288023|gb|ADI73989.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
Length = 239
Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/249 (20%), Positives = 81/249 (32%), Gaps = 59/249 (23%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I EIF ++QGEG + G VF RF GCNL C++CDT + +
Sbjct: 4 PISEIFCSVQGEGPYVGVRQVFVRFIGCNLQ-----------CQYCDTQREYVDFCRFEE 52
Query: 65 YNVDQLADLI--------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
+LI + I LTGGEPL+ D ++ + +
Sbjct: 53 NPGSDEFELIPNPLDVNTVAESIESFSSVHSVSLTGGEPLIHADFIKNLQISA---PLYL 109
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-------FE 169
E+N T+ VS D+KI E + + +++ F
Sbjct: 110 ESNMTLPEMAKKVKDKVSF-VSGDVKIINEFECDDFETHIEKTIDSFKILKTTESRDCFC 168
Query: 170 RF-------------------------SLQPMDGPFLEENTNLAISYCFQNP----KWRL 200
+ LQP+ + + + Q ++
Sbjct: 169 KIVVLENTKIEYVLDIMDKISDYISGAILQPVTQGYNRPSVQHLLQIQKQLLDKGINTKV 228
Query: 201 SVQTHKFIG 209
QTHK +G
Sbjct: 229 IPQTHKMLG 237
>gi|260887262|ref|ZP_05898525.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
gi|330838981|ref|YP_004413561.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
gi|260863324|gb|EEX77824.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
gi|329746745|gb|AEC00102.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
Length = 241
Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/247 (20%), Positives = 76/247 (30%), Gaps = 55/247 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---------VG 56
I EIF ++QGEG + G VF RF+GCN +C FCDT F
Sbjct: 5 ILEIFSSIQGEGKYIGARQVFLRFAGCN-----------IKCSFCDTAFQPAASCRVEAI 53
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKRGFEI 114
+ + + R+ LTGGEPLL + ++
Sbjct: 54 PGCGEYEELPNPLSVQEVAARIRAFVVPVRHHSISLTGGEPLLHATF-IRALASEVNVPF 112
Query: 115 AVETNG-----TIEPPQGIDWICVSPKAGC--------------DLKIKGGQELKLVFPQ 155
+ETNG +I + K L +K+V +
Sbjct: 113 FLETNGTLYEEMASILDITSYISMDIKLPSVTGKSLWEEHRRFLRLLHNHDTYVKIVVAE 172
Query: 156 VNVSPENYIGFDFER-------FSLQP------MDGPFLEENTNLAISYCFQNPKWRLSV 202
E F +QP + P ++ +L R+
Sbjct: 173 NTEEEEFQEAVHLVAHIAPQILFVIQPATPFGSVHAPTAKKLLHLQEEAAEHLANVRVIP 232
Query: 203 QTHKFIG 209
Q H+ +G
Sbjct: 233 QAHRMMG 239
>gi|238926278|ref|ZP_04658038.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
gi|238885958|gb|EEQ49596.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
Length = 248
Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 80/248 (32%), Gaps = 57/248 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQG----- 59
I EIF ++QGEG + G VF R GCNL C +CDTD G
Sbjct: 10 IIEIFSSIQGEGKYVGCRQVFLRLEGCNLN-----------CTYCDTDSKAGTHPNCVVE 58
Query: 60 TKGGRYNVDQLADLI-------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGF 112
G Y++ + I + +TGGEPLL A +
Sbjct: 59 EGAGTYHLVPYPNPISPERAAELVALAAAGVPHQALSITGGEPLLHASFIRALAPHVH-L 117
Query: 113 EIAVETNGTIEPPQGIDWICV----------SPKAGCDLKIKGGQ----ELKLVFPQVNV 158
I +ETNGT+ CV S A ++K + ++ V
Sbjct: 118 PIYLETNGTLYAELKKCIDCVAGISMDIKLPSVTAHPVWDAHVRFLEIAKVKDTWIKIVV 177
Query: 159 SPEN------------YIGFDFERFSLQP------MDGPFLEENTNLAISYCFQNPKWRL 200
+ E+ LQP P E+ + + R+
Sbjct: 178 AAESPDSEIDTAVRLVADTAPETMLILQPVTPCGGCMKPSSEQLLKWQETALRRLANVRV 237
Query: 201 SVQTHKFI 208
QTH+ +
Sbjct: 238 IPQTHRMM 245
>gi|126642575|ref|YP_001085559.1| putative organic radical activating enzyme [Acinetobacter baumannii
ATCC 17978]
gi|126388459|gb|ABO12957.1| putative organic radical activating enzyme [Acinetobacter baumannii
ATCC 17978]
Length = 124
Score = 89.6 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
QGE +G VF R +GC L +C +CDT + G R +++ + +
Sbjct: 2 QGEANASGLPTVFIRLTGCPL-----------RCSYCDTTYSF---EGGERLSLEHIIET 47
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWIC 132
E + + Y +TGGEPL Q + + +Q L GF++++ET+G ++ + +
Sbjct: 48 AE------KYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVSRVDPRVS 101
>gi|315645649|ref|ZP_07898773.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus vortex V453]
gi|315279127|gb|EFU42437.1| 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
[Paenibacillus vortex V453]
Length = 224
Score = 89.6 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/224 (18%), Positives = 77/224 (34%), Gaps = 50/224 (22%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GR +F R +GC+ +C +CD+ F G+ + D+ +E +
Sbjct: 3 VGRKTMFVRTAGCD-----------YRCSWCDSAFTW-DGSAKDSISHMSADDIWQELYR 50
Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + L+GG P LL L+ L++ G +AVET G+ +D + +SPK
Sbjct: 51 LGGERFDHVTLSGGNPALLSQLGSLVNELHRHGITVAVETQGSRWQDWLNEVDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVN--------------VSPEN-------YIGFDFERFSLQP 175
+L + +++ + + + F LQ
Sbjct: 111 PPSSGMATDWGKLDDIISRLSGRPPGRSFSLKVVVFDDHDLAYAETVHERYPNVPFYLQT 170
Query: 176 MDGPFLEENTNLAISYCFQNPK--------------WRLSVQTH 205
+ +T +S+ + R+ Q H
Sbjct: 171 GNPDVGTGDTTTLVSHLLDRYEQLVEAVMLSDRLNDVRVLPQLH 214
>gi|326774406|ref|ZP_08233671.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
gi|326654739|gb|EGE39585.1| Radical SAM domain protein [Streptomyces cf. griseus XylebKG-1]
Length = 244
Score = 88.8 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 77/242 (31%), Gaps = 46/242 (19%)
Query: 4 YSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
++EIF + QGEG GR A F RF CNL C CD+
Sbjct: 15 LPVQEIFGPVPQGEGPFMGRRACFVRFGRCNL-----------HCPPCDSKATWDSSRYD 63
Query: 63 GRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
R + + I + VLTGGEPL+ Q L EI VETN
Sbjct: 64 LRQTCPPRTVEDIAQTAAAHGAGSGITVLTGGEPLMWQRSTAWAQLLQDLPGEIHVETNA 123
Query: 121 TIEPPQGID----WICVSPKAGC--------------------DLKIKGGQELKLVFPQV 156
TI VSPK G +L +G K V +
Sbjct: 124 TIAADPVTTGRVAHFSVSPKIGRMGGADPEKKRLVPTALESFAELARQGRAVFKFVAGDI 183
Query: 157 NVSPE-----NYIGFDFERFSLQPMDGPFLEENTN--LAISYCFQNPKWRLSVQTHKFIG 209
E +R + P+ T + + + LS + H +G
Sbjct: 184 GEVDEAAQVVRIFQLPQDRVWIMPLGDDAASWATAGGDIADHVM-HLGFNLSGRLHLTLG 242
Query: 210 IR 211
+R
Sbjct: 243 VR 244
>gi|304437068|ref|ZP_07397031.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370019|gb|EFM23681.1| radical SAM domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 248
Score = 88.8 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 53/250 (21%), Positives = 79/250 (31%), Gaps = 61/250 (24%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK---- 61
I EIF T+QGEG + G VF R GCNL C +CDT+
Sbjct: 10 IIEIFSTVQGEGKYVGCRQVFLRLEGCNL-----------HCSYCDTNSAVGMHPDCVVE 58
Query: 62 -----------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR 110
+ + A+L+E + +TGGEPLL A +
Sbjct: 59 EGAGTYHLVPYPNPISPQRAAELVE--IAAAGVPHQALNITGGEPLLHAAFIHALAPHVH 116
Query: 111 GFEIAVETNGTIEPPQGIDWICV-----SPKAGCDLKIKGGQE--------------LKL 151
I +E+NGT+ CV K +K+
Sbjct: 117 -LPIYLESNGTLHEELKKCVDCVAGISMDIKLPSATTHPVWDAHVRFLEIAKAKDTWVKI 175
Query: 152 VFP------QVNVSPENYIGFDFER-FSLQPMDG------PFLEENTNLAISYCFQNPKW 198
V +V+ + E LQP+ P E+ + +
Sbjct: 176 VVAGESPDGEVDTAIRLVADIAPETMLILQPVTPYGGCTKPSPEQLLAWQENALRRLAHV 235
Query: 199 RLSVQTHKFI 208
R+ QTH+ +
Sbjct: 236 RVIPQTHRMM 245
>gi|289667003|ref|ZP_06488078.1| putative radical activating enzyme [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 90
Score = 88.8 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
I EIFL+LQGE AG VF R +GC L +C +CDT + G
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPL-----------RCLYCDTAYAFH---GG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
+ +D + + R+ +TGG P
Sbjct: 63 EWHEIDAIVAEVAR------HGVRHVCVTGGPP 89
>gi|87200860|ref|YP_498117.1| radical SAM family protein [Novosphingobium aromaticivorans DSM
12444]
gi|87136541|gb|ABD27283.1| Radical SAM [Novosphingobium aromaticivorans DSM 12444]
Length = 247
Score = 88.4 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 69/202 (34%), Gaps = 45/202 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E+F +LQGEG GR +VF R S CNL CR+CDT + +
Sbjct: 13 EVFSSLQGEGPGMGRPSVFVRLSRCNL-----------ACRWCDTAYTWRFAGDNRPHRD 61
Query: 68 DQLADLIEEQWITGE---------KEGRYCVLTGGEPLLQ----VDVPLIQALNKRGFEI 114
+ + Q + E V+TGGEPLLQ + + + +
Sbjct: 62 EVAFEKAGNQLVMSEEDTAALILVHPEDRLVITGGEPLLQGAALARLVALLKAERPALHV 121
Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ETNGT+ L + Q NVSP+ + +L
Sbjct: 122 EIETNGTVAVHP---------------------ALDPLVDQFNVSPKLSHSGNPAELALL 160
Query: 175 PMDGPFLEENTNLAISYCFQNP 196
P + + +P
Sbjct: 161 PERLEAWARDPRAWFKFVVADP 182
>gi|329940403|ref|ZP_08289684.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
griseoaurantiacus M045]
gi|329300464|gb|EGG44361.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
griseoaurantiacus M045]
Length = 247
Score = 88.4 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 60/159 (37%), Gaps = 22/159 (13%)
Query: 6 IKEIF----LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG-- 59
+ E F T QGEG G A+F R S CNL R CDT +
Sbjct: 21 VAECFGTEVPTFQGEGPSCGHPALFIRLSRCNLTCTR-----------CDTKYTWDWSRF 69
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
+A L+ V+TGGEPL+Q VPLI+ L G I E
Sbjct: 70 DPHEESTRQSVAGLVA---WATSSPVELVVITGGEPLIQQARLVPLIRGLIAVGKRIEFE 126
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
TNGTI P + V L G +E K + P
Sbjct: 127 TNGTIAPTPELAADGVRFNVSPKLASFGVKETKSIVPAA 165
>gi|213422146|ref|ZP_03355212.1| hypothetical protein Salmonentericaenterica_32183 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 43
Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV 55
Y I E+F TLQGEG G A+F R GC + C +CDT
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPV-----------GCAWCDTKHT 43
>gi|317052127|ref|YP_004113243.1| Radical SAM domain-containing protein [Desulfurispirillum indicum
S5]
gi|316947211|gb|ADU66687.1| Radical SAM domain protein [Desulfurispirillum indicum S5]
Length = 240
Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 78/247 (31%), Gaps = 52/247 (21%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ------G 59
I+E+F ++QGEG GR +F R GCNL C +CDT I
Sbjct: 5 IQEMFWSVQGEGPRCGRPQLFVRLHGCNLT-----------CSYCDTPASLIPRAPQSFP 53
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL---IQALNKRGFEIAV 116
G + ++ +TGGEPL Q D E+ +
Sbjct: 54 WHGRTVPNPVPLEFLQTLVAPELPFVESVSITGGEPLCQGDFVAAFGRWLCQDMAMEVLL 113
Query: 117 ETNGTIE---PPQGIDWICVSPKAGCDLKIKG------------------GQELKLVFPQ 155
ETNGT + VS + K++
Sbjct: 114 ETNGTFPGWLKENTDSFSLVSADLKFPWAQQHRDTAGELLDFLQSRQQSCQDSCKIICDD 173
Query: 156 VNVSPENYIGFDFER------FSLQPM-----DGPFLEENTNLAISYCFQNPKWRLSVQT 204
++ ++ LQP+ +EE+ L +Y + + L Q
Sbjct: 174 AFLACASHWLDHMVERGARFPVVLQPLTAADGSCRGVEESMKLVRTYTERGLRIWLIPQM 233
Query: 205 HKFIGIR 211
H +G++
Sbjct: 234 HHLLGVQ 240
>gi|294496219|ref|YP_003542712.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
gi|292667218|gb|ADE37067.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
Length = 239
Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 49/251 (19%), Positives = 70/251 (27%), Gaps = 60/251 (23%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-- 58
M+ + EIF +QGEG + G F RF GCNL C +CDT
Sbjct: 1 METKPVSEIFCAVQGEGPYVGVRQAFVRFVGCNLD-----------CSYCDTPLDEPDHC 49
Query: 59 -------GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRG 111
+ + + A IEE LTGGEPLL
Sbjct: 50 LFEKVPGSGEFEKLSPMLCASDIEE-RTRAFVNLHSVSLTGGEPLLH---AEFIRGLDLP 105
Query: 112 FEIAVETNGTIEPPQGI--------------------------------DWICVSPKAGC 139
+ +ETN T+ I + +
Sbjct: 106 APVYLETNMTLPEKAAIVKDSVDYVAGDVKLPEEFEGSNFVEHLERTYKCFRTLQSNQHR 165
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
D K +V E + LQP+ + +S + +
Sbjct: 166 DCFCKIVVTSSTKPAEVMDVVEQISDYISCVV-LQPVTQHTGATDIRTILSLQENLLEIK 224
Query: 200 ---LSVQTHKF 207
+ QTHK
Sbjct: 225 NTLIIPQTHKM 235
>gi|147921309|ref|YP_684877.1| hypothetical protein RCIX33 [uncultured methanogenic archaeon RC-I]
gi|110620273|emb|CAJ35551.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length = 245
Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 49/256 (19%), Positives = 82/256 (32%), Gaps = 68/256 (26%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
MK ++EIF+++QGEG + G F RF CNL +C +CDT
Sbjct: 1 MKA-PVREIFVSVQGEGPYVGYRQAFVRFPKCNL-----------ECLYCDTAKDWDSNK 48
Query: 57 ----IQGTKGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVDVPLIQALNKR 110
+ G + ++ E++ + LTGGEPLL I+ L
Sbjct: 49 KCMVEKTPGSGDFAEEENPITPGRLLTIAERDPKIHSISLTGGEPLLY--GSFIKELKGA 106
Query: 111 GFEIAVETN-----GTIEPPQGIDWICVSPKAGCDLKIKGGQELKL-------------- 151
+ + +ETN G + + + K K E
Sbjct: 107 KYPLYLETNMTLPEGAKDVKDVVKIVSGDFKLKAHCDFKNQYEKYFNATARSFSILRRTS 166
Query: 152 -------VFPQVNVSPENYIGFDFE------RFSLQP---------MDGPFLEENTNLAI 189
+ ++ E+ + + LQP + F+ + A+
Sbjct: 167 FRDCFCKIIVTPDLEKEDLMHALDQIKGTISALVLQPVTPVGPVGQVSPKFVLDLQTAAM 226
Query: 190 SYCFQNPKWRLSVQTH 205
R+ QTH
Sbjct: 227 DVVED---VRVIPQTH 239
>gi|111222166|ref|YP_712960.1| mycobacteriophage protein Gp5 [Frankia alni ACN14a]
gi|111149698|emb|CAJ61390.1| Mycobacteriophage protein Gp5 [Frankia alni ACN14a]
Length = 221
Score = 87.6 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
QGEG AGR+A F R GCNL C +CDT + G R+++
Sbjct: 2 QGEGPAAGRLATFVRLGGCNLS-----------CSWCDTSYTW----DGARFDLRTEITS 46
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEPPQ--- 126
+ I + V+TGGEPLL + P L++ L ++ I VETNGT+ P
Sbjct: 47 TAVETIAAKVTTDLVVITGGEPLLHQERPGWTALLRTLTQQQRAIHVETNGTVRPTPMSL 106
Query: 127 -GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+ VSPK +G Q +L ++ ++ + ++E
Sbjct: 107 QHVAMWVVSPKLRNAGTHRGRQRARLATEWPALAAQHDGRAHLKIVC---EGADDVQEAA 163
Query: 186 NLAISY 191
LA +
Sbjct: 164 RLAERW 169
>gi|289674681|ref|ZP_06495571.1| radical SAM family protein [Pseudomonas syringae pv. syringae
FF5]
Length = 76
Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 1 MK-LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M+ I EIF +LQGE AG VF R +GC L +C++CD+ + G
Sbjct: 1 MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPL-----------RCQYCDSAYAFSGG 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
+ L D+ RY +TGG P
Sbjct: 50 ------TIQTLDDI---LGQVASYRPRYVCVTGGAP 76
>gi|20092988|ref|NP_619063.1| hypothetical protein MA4197 [Methanosarcina acetivorans C2A]
gi|19918305|gb|AAM07543.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 255
Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/254 (22%), Positives = 82/254 (32%), Gaps = 67/254 (26%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
SIKEIF ++QGEG + G F RFSGCNL C +CDT+F +
Sbjct: 10 SIKEIFCSVQGEGPYVGVRQAFVRFSGCNLN-----------CNYCDTNFENLGTCDYEI 58
Query: 65 YNVDQLADLI--------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
+ + + I E + K+ LTGGEPLL D K + +
Sbjct: 59 IEGNGIFEKIPNPINVEKLESLLQPFKKLHSVSLTGGEPLLHAD---FIEKLKLPVPLYL 115
Query: 117 ETNGTIEPP-----QGIDWICVSPKAGCDLKIKGGQELKLVF------------------ 153
E+N T+ + I ++ K L+ + +
Sbjct: 116 ESNMTLPEQARKLRENITYVAGDFKLPEALREIRPETRDMHVENTIKCFSLLKKNKLRDC 175
Query: 154 -----------PQVNVSPENYIGFDFERFSLQPM----DGPFLEENTNLAISYCFQNPK- 197
P+ V I D LQP T ++ + K
Sbjct: 176 FCKIVVGRDTRPETVVLAAEAIASDVSCIILQPETPVGSAVRTPRFTQASVQTILKLQKT 235
Query: 198 ------WRLSVQTH 205
R+ QTH
Sbjct: 236 LLELADTRIIPQTH 249
>gi|186684456|ref|YP_001867652.1| radical SAM domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186466908|gb|ACC82709.1| Radical SAM domain protein [Nostoc punctiforme PCC 73102]
Length = 265
Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/268 (18%), Positives = 78/268 (29%), Gaps = 79/268 (29%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT---- 60
+ E+F +QGEG + G +F RF+ C+L +C FCD+
Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFALCDL-----------RCHFCDSAHTWNAPATCRI 60
Query: 61 -------KGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQ-----VDVPLIQA 106
++ ++ E + LTGGEPLL +P ++A
Sbjct: 61 ERSPGLRDFEIHSNPVPLPILIEWVEQQNLPCLHDSISLTGGEPLLHAPFLTQFLPQVRA 120
Query: 107 LNKRGFEIAVETNGT----------IEPPQGIDWICVSPKAGCDLKIK----------GG 146
+ G I +ET G G+D+ S +
Sbjct: 121 I--TGLPIYLETGGHRSEQLAMILPYLDSVGMDFKLPSVSGESHWQEHAKFLQLCHDSYL 178
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS---------------- 190
+ N P + P FL+ T LA+S
Sbjct: 179 NVFVKIIVSQNTDPGELERSASLVAKVSPDIPVFLQPVTPLAVSEQFSSILMLAPTPDQV 238
Query: 191 ---------YCFQNPKWRLSVQTHKFIG 209
+ R+ QTHK +
Sbjct: 239 LTWQALMKGFIK---HVRVIPQTHKMLN 263
>gi|282163368|ref|YP_003355753.1| hypothetical protein MCP_0698 [Methanocella paludicola SANAE]
gi|282155682|dbj|BAI60770.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 243
Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 82/254 (32%), Gaps = 66/254 (25%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG---- 56
MK I+EIF++ QGEG + G +F RF CNL +C++CDT
Sbjct: 1 MKS-PIREIFVSAQGEGPYVGYRQLFVRFPKCNL-----------ECQYCDTPKDWSSES 48
Query: 57 ---IQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGF 112
++ G D + E + LTGGEPLL I+ L F
Sbjct: 49 KCRVESKPGEFVEYDNPFSSEHLLSVIKLYERIHSVSLTGGEPLLY--AKFIKELKTSKF 106
Query: 113 EIAVETN-----GTIEPPQGIDWICVSPKAGCDLKIKGGQELKL---------------- 151
+ +E+N G E + ++ K KG E
Sbjct: 107 PLYLESNMTLPEGAKEVKDVVKYVSGDFKLKDQCDFKGHYEKYFNDTARSFSILRQTSFR 166
Query: 152 -----VFPQVNVSPENYIGFD------FERFSLQPM---------DGPFLEENTNLAISY 191
+ ++ E+ + LQP+ L E + A+
Sbjct: 167 DCFCKIIVSEDIDREDMMHAVDQIKDCITELILQPVTPTGGVEAASSKLLLELQDKALEK 226
Query: 192 CFQNPKWRLSVQTH 205
R+ QTH
Sbjct: 227 VE---NVRIIPQTH 237
>gi|119513185|ref|ZP_01632233.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414]
gi|119462172|gb|EAW43161.1| hypothetical protein N9414_13008 [Nodularia spumigena CCY9414]
Length = 265
Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/264 (15%), Positives = 76/264 (28%), Gaps = 71/264 (26%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT---- 60
+ E+F +QGEG + G +F RF+ C+L +C FCD+
Sbjct: 12 RLIEVFSAIQGEGLNVGTRQLFIRFALCDL-----------RCHFCDSAHTWNAPATCRI 60
Query: 61 -------KGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQ--VDVPLIQALNK 109
++ ++ + + LTGGEPLL + +
Sbjct: 61 ELTPGLRDFEIHSNPVSLPILIQWVERQNLPCLHDSISLTGGEPLLHAAFLKEFLPQVRS 120
Query: 110 R-GFEIAVETNGTIE-----------------------------PPQGIDWICVSPKAGC 139
I +E+ G +C +
Sbjct: 121 LTNLPIYLESGGHRPEQLAMVLPYLDSVGMDLKLPSVSGESLWTEHTNFLQLCFNTHLEV 180
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM----------DGPFLEENTNLAI 189
+KI + + + + D LQP+ + P L +
Sbjct: 181 FVKIIISDNTDPAELERSAAMVADVSPDIP-IFLQPVTPLAASEQLTETPVLAPAPEKVL 239
Query: 190 SY--CFQN--PKWRLSVQTHKFIG 209
+ + P+ R+ QTHK +
Sbjct: 240 MWQALMKQFVPQVRVIPQTHKMLN 263
>gi|291277034|ref|YP_003516806.1| hypothetical protein HMU08200 [Helicobacter mustelae 12198]
gi|290964228|emb|CBG40077.1| putative hypothetical protein [Helicobacter mustelae 12198]
Length = 286
Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/283 (19%), Positives = 86/283 (30%), Gaps = 77/283 (27%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR---FCDTDFVGI 57
M++ I EIF +LQGEG G +VF R CNL +RL + CD+ +
Sbjct: 1 MQILKISEIFYSLQGEGSAIGMPSVFVRVGLCNLRCKGFGERLRYRGEEILGCDSIYAAN 60
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEK---------------------------------- 83
+ + +LI +
Sbjct: 61 PKFQEEWREFESSKELISAIFAAVCGNLGSSVDAALRGEAGDFSSAQVGGDALLEAPEPL 120
Query: 84 EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
VLTGGEP L P I+ R I+VE+NG++ + G
Sbjct: 121 PPFDIVLTGGEPSLYFQNPALLGAIEFFLARHHRISVESNGSVLFAFTPLLERLHFTLGI 180
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIG-------FDFE----------------------R 170
L G +E K + + ++ D +
Sbjct: 181 KLSNSGEREQKRLNFPAIQNILDHAASVVLKFVLDAKMCQDGSALKEIDAILSQISGSYE 240
Query: 171 FSLQPM--DGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGIR 211
L PM + +N + C + ++LS + H IR
Sbjct: 241 VYLMPMGSSIETINQNIKAILPLCLKR-GYKLSDRLH----IR 278
>gi|114776301|ref|ZP_01451346.1| radical activating enzyme family protein [Mariprofundus
ferrooxydans PV-1]
gi|114553131|gb|EAU55529.1| radical activating enzyme family protein [Mariprofundus
ferrooxydans PV-1]
Length = 196
Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 65/208 (31%), Gaps = 41/208 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
F R +GC L +C +CDT I G +D + ++++
Sbjct: 1 MACTFIRLAGCPL-----------RCTYCDTPQA-IPFDSGEWMQIDDIVTDVQKR---- 44
Query: 82 EKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE----PPQGIDWICVSPK 136
++TGGEPL + L+ L G E+ +ET+G P + +
Sbjct: 45 --NRPLVLVTGGEPLAQRHCSELLSELLALGCEVQLETSGAYPLASLPVGVRRIVDLKTP 102
Query: 137 AGCDLKIKG---------GQELKLVFPQVNVSPENYIGFDFERF-------SLQPMDGPF 180
+ + G E+K+V + R L G
Sbjct: 103 GSGEAERNRLDNLSCLCAGDEIKMVLTSRADYQWAAAMIEQHRLGQGDVPVLLSAAWGSL 162
Query: 181 LEENTNLAISYCFQNPKWRLSVQTHKFI 208
E L RL +Q HK I
Sbjct: 163 KAE--ELCQWMLDDRLPARLQLQLHKVI 188
>gi|302531820|ref|ZP_07284162.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
sp. AA4]
gi|302440715|gb|EFL12531.1| 7-cyano-7-deazaguanosine biosynthesis protein QueE [Streptomyces
sp. AA4]
Length = 237
Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 56/213 (26%), Positives = 74/213 (34%), Gaps = 40/213 (18%)
Query: 6 IKEIF-LTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
+ E F T+QGEG GR AVF R CNL CDT + T+
Sbjct: 12 VAERFGPTVQGEGPSIGRRAVFIRLMNCNLTCKN-----------CDTPYTW-DRTRFDL 59
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
+A + + + V+TGGEPL+Q L Q L G E+ VETNGTI
Sbjct: 60 DAEGTVASISDLLAWVTVQSVDLVVITGGEPLMQQRSLTALAQGLADAGLEVEVETNGTI 119
Query: 123 -EPPQGIDWIC---VSPKAGCDLKIKGGQE-----------------LKLV---FPQVNV 158
P + W+ VSPK + K V ++
Sbjct: 120 VPAPDLLAWVTRFNVSPKLSSFGAGMPISKRIKGRVLGHFAASGLAVFKFVVSSIADLDE 179
Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
E D + P +G EE T
Sbjct: 180 ITELVADHDLAPVYVMP-EGRTAEEVTRRLAEI 211
>gi|296284595|ref|ZP_06862593.1| coenzyme PQQ synthesis protein, conjectural [Citromicrobium
bathyomarinum JL354]
Length = 208
Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYN 66
EIF ++QGEG AG F R S CNL C +CDT + G + +
Sbjct: 22 EIFASVQGEGPSAGEPTAFVRLSRCNL-----------ACVWCDTAYTWHFAGDERPHRS 70
Query: 67 VDQLADLIEE--------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
+ R V+TGGEP+LQ + +ET
Sbjct: 71 GQTFDRKANQVTLEVEDVAARIAALGQRRLVVTGGEPMLQAPALAQLLALLPDVTVEIET 130
Query: 119 NGTIEPPQGIDW 130
NGT P
Sbjct: 131 NGTAFPRPSSKC 142
>gi|229120981|ref|ZP_04250223.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus 95/8201]
gi|228662641|gb|EEL18239.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus 95/8201]
Length = 220
Score = 84.9 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFP-----------------QVNVSPENYIGFDFERFSLQPMDGP 179
Q+L V + + + + + F LQ +
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFDYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 210
>gi|91773249|ref|YP_565941.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
6242]
gi|91712264|gb|ABE52191.1| Fe-S protein, radical SAM family [Methanococcoides burtonii DSM
6242]
Length = 238
Score = 84.9 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 68/245 (27%), Gaps = 56/245 (22%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD--------FVG 56
I EIF ++QGEG H G F RF GCNL C +CDT+ F
Sbjct: 4 PISEIFCSVQGEGPHVGVRQAFVRFIGCNLN-----------CSYCDTEPADPSVCMFER 52
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
G+ + L + + LTGGEPLL D + + +
Sbjct: 53 TPGSNSFENIPNPLVTSQVSELLGNYGNIHSVSLTGGEPLLHAD---FISKMDIPHLLYL 109
Query: 117 ETNGTIEPPQGIDWICVSPKAG-------------------------------CDLKIKG 145
E+N T+ VS +G
Sbjct: 110 ESNMTLPHMAEKIKDKVSYVSGDIKLIDEFEGEDLVTHLEQTIECFRTLRQTKDRECFCK 169
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY---CFQNPKWRLSV 202
K P + I LQP+ + + +
Sbjct: 170 LVVTKDTVPDDVYRMVDAISDYVSCVVLQPVTQNNFSSGIEFLLQLQKNLLDSVDTLIIP 229
Query: 203 QTHKF 207
QTHK
Sbjct: 230 QTHKM 234
>gi|159905256|ref|YP_001548918.1| radical SAM domain-containing protein [Methanococcus maripaludis
C6]
gi|159886749|gb|ABX01686.1| Radical SAM domain protein [Methanococcus maripaludis C6]
Length = 242
Score = 84.9 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 57/250 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------GIQG 59
I+E+F ++ GEG G+ +F RF C L C +CD +
Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPLD-----------CIYCDEPNAPGGTARVEEI 50
Query: 60 TKGGRYN--VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
+ G + ++ +LIE + TGGEPLL + L ++G++
Sbjct: 51 SGSGEFTEYLELDHELIETIEKLRTPDLFAVSFTGGEPLLYSNKIKKYSEILKQKGYKTF 110
Query: 116 VETNGTIEPP-QGIDWICVSPKAGCDLKIKGGQ--------ELKL--------------- 151
+E+NG G D+ + K + K EL+
Sbjct: 111 LESNGMFPEKLDGYDYASIDIKLPEHFENKDDDFWYDLYTKELETIERLYLAGTDVYAKI 170
Query: 152 -VFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQNPKWR 199
VF + + I D + +QP+ + T ++ C +
Sbjct: 171 VVFEETSEELIERIARDLSKIGNITLCIQPVSPTDRIKATTSKKKIFELMAICGRYVDVM 230
Query: 200 LSVQTHKFIG 209
+ Q HK++G
Sbjct: 231 CTPQIHKWMG 240
>gi|270157549|ref|ZP_06186206.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|289164069|ref|YP_003454207.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150]
gi|269989574|gb|EEZ95828.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|288857242|emb|CBJ11067.1| hypothetical protein LLO_0725 [Legionella longbeachae NSW150]
Length = 291
Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 52/205 (25%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--V 67
F TLQGEG G A F R + CNL C FCDT F + + +
Sbjct: 27 FFTLQGEGPFRGHPAYFIRLAKCNL-----------ACSFCDTYF---DSGEWRNFTSLL 72
Query: 68 DQLADLIEEQWITGEKEGRYC----------VLTGGEP-LLQVDVPLIQALNKRGFEIAV 116
++ +IE+ + V+TGGEP L Q + +
Sbjct: 73 EEADQVIEDFFKNRNLPPPSWAQGLTKKMVLVITGGEPSLQQNLSAFLDIAQPYFQSTQI 132
Query: 117 ETNGTI--EPPQGIDWICVSPK------------AGCDLKIKGGQELKLV---------- 152
E+NG + VSPK ++ LK V
Sbjct: 133 ESNGICVLSDLPKSTTLVVSPKCLEKEGKVIRYLKPNPKMLERADCLKFVISAPEDNQYA 192
Query: 153 -FPQVNVSPENYIGFDFERFSLQPM 176
+ + + + ++ + PM
Sbjct: 193 PYSDIPLWAHEWAKKRNKKIFISPM 217
>gi|75906966|ref|YP_321262.1| radical SAM family protein [Anabaena variabilis ATCC 29413]
gi|75700691|gb|ABA20367.1| Radical SAM [Anabaena variabilis ATCC 29413]
Length = 264
Score = 84.6 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/262 (17%), Positives = 74/262 (28%), Gaps = 68/262 (25%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT---- 60
+ E+F +QGEG + G +F RF+ C+L +C FCD+
Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRI 60
Query: 61 -------KGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQ--VDVPLIQALNK 109
+ + E + LTGGEPLL + +
Sbjct: 61 ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDSISLTGGEPLLHAPFLQEFLPKVRS 120
Query: 110 R-GFEIAVETNGTI--------EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV---- 156
G I +ET G + P + + + +
Sbjct: 121 LTGLPIYLETGGHRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCHSQSETF 180
Query: 157 --NVSPENYIGFDFERFSL-----QPMDGPFLEENTNLAISY------------------ 191
+ + ER +L P FL+ T LA S
Sbjct: 181 VKIIISHRTDLAELERAALLVADVSPEIPVFLQPVTPLAESDQFSQTPALAPAPADVLTW 240
Query: 192 ---CFQNPK-WRLSVQTHKFIG 209
+ K R+ QTHK +
Sbjct: 241 QTSMKRFLKYVRVVPQTHKMLN 262
>gi|229160394|ref|ZP_04288392.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus R309803]
gi|228623118|gb|EEK79946.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus R309803]
Length = 220
Score = 84.6 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDIWNELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVFP-----------------QVNVSPENYIGFDFERFSLQPMDGP 179
Q+L V + + + + F LQ +
Sbjct: 111 PPSSTMHTDFQKLDAVIQKLAGKDISLKVVVFDDSDFEYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAINCKAMNDAKVLPQLH 210
>gi|301167425|emb|CBW27007.1| putative radical SAM domain protein [Bacteriovorax marinus SJ]
Length = 233
Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 87/245 (35%), Gaps = 57/245 (23%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK + I I+ +GEG H G +F RF GC + C CD+
Sbjct: 1 MKSFLINSIYPATEGEGVHIGTPQIFVRFQGC-----------AIGCLNCDSKDTWD--F 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAV 116
G + +D++ IE+ G + + +TGG+PL L+ L +RG+ I +
Sbjct: 48 TGRNWTLDEVLGAIED---AGGERIKRVSITGGDPLHPSHTEQVSLLVSTLKERGYFINI 104
Query: 117 ETNGTI---EPPQGIDWICVSPKAGCDLKIKGGQELKLVFP------QVNVSPENYIGFD 167
E GT E ID+I K Q L + Q+ E F+
Sbjct: 105 EAAGTRVVDEIFNKIDFISFDFKTPSTGVKTRVQNLNKLIQNYPNKFQIKAVVETREDFE 164
Query: 168 FERFSLQPMDGPFLEENTNLAISYCF--------QNP--------KW--------RLSVQ 203
+ L N +L+ +C + P KW R+ Q
Sbjct: 165 ATLD----IYNELLSMNESLSFPWCLTPSYNLNEEFPLERFRNVIKWNEEGGSIFRVIGQ 220
Query: 204 THKFI 208
HK++
Sbjct: 221 QHKWL 225
>gi|150402999|ref|YP_001330293.1| radical SAM domain-containing protein [Methanococcus maripaludis
C7]
gi|150034029|gb|ABR66142.1| Radical SAM domain protein [Methanococcus maripaludis C7]
Length = 242
Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 79/250 (31%), Gaps = 57/250 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58
I+E+F ++ GEG G+ +F RF C L C +CD T V
Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPLD-----------CIYCDEPNTPGGTARVEEV 50
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
G +L + + E + TGGEPLL + + L +G++
Sbjct: 51 SGSGDFTEYLELENELIEIIEKLRTPDLFAVSFTGGEPLLYPNKIKQYSEILKHKGYKTF 110
Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE------------- 161
+E+NG D+ + K + K ++ + + E
Sbjct: 111 LESNGMFPERLDSYDYASIDIKLPEHFENKDDDFWYNLYSKELETIERLYLAGTDVYAKI 170
Query: 162 ----------------NYIGFDFERFSLQPMDGPFLEENTN------LAISYCFQNPKWR 199
+ +QP+ + T ++ C +
Sbjct: 171 VVFEETSEELIERIARDLSKIGNITLCIQPVSPTDRIKATTSKKKIFELMAICGRYVDVM 230
Query: 200 LSVQTHKFIG 209
+ Q HK++G
Sbjct: 231 CTPQIHKWMG 240
>gi|17231653|ref|NP_488201.1| hypothetical protein alr4161 [Nostoc sp. PCC 7120]
gi|17133296|dbj|BAB75860.1| alr4161 [Nostoc sp. PCC 7120]
Length = 264
Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/262 (18%), Positives = 73/262 (27%), Gaps = 68/262 (25%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT---- 60
+ E+F +QGEG + G +F RF+ C+L +C FCD+
Sbjct: 12 RLVEVFSAIQGEGLNVGTRQIFIRFAFCDL-----------RCHFCDSAHTWNAPASCRI 60
Query: 61 -------KGGRYNVDQLADLIEEQWITGEKEGRY--CVLTGGEPLLQ--VDVPLIQALNK 109
+ + E + LTGGEPLL + +
Sbjct: 61 ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDSISLTGGEPLLHAPFLQEFLPKVRS 120
Query: 110 R-GFEIAVETNGTIE----------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV 158
G I +ET G G+D S + +
Sbjct: 121 LTGLPIYLETGGHRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCLTQSETF 180
Query: 159 SP----ENYIGFDFERFSL-----QPMDGPFLEENTNLAISY------------------ 191
+ ER +L P FL+ T LA S
Sbjct: 181 VKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPADVLTW 240
Query: 192 ---CFQNPK-WRLSVQTHKFIG 209
+ K R+ QTHK +
Sbjct: 241 QASMKRFLKYVRVVPQTHKMLN 262
>gi|134046626|ref|YP_001098111.1| radical SAM domain-containing protein [Methanococcus maripaludis
C5]
gi|132664251|gb|ABO35897.1| Radical SAM domain protein [Methanococcus maripaludis C5]
Length = 242
Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 74/250 (29%), Gaps = 57/250 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58
I+E+F ++ GEG G+ +F RF C L C +CD T V
Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPLD-----------CIYCDEPNAPGGTARVEEV 50
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
G +L + + + TGGEPLL + L +G++
Sbjct: 51 SGSGDFMEYLELEHELIDIIEKLRTPDLFAVSFTGGEPLLYSNKIKQYSEILKHKGYKTF 110
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL------------------------ 151
+E+NG + E
Sbjct: 111 LESNGMFPERLDSYDYASIDIKLPEHFENKEDEFWYDLYSKELETIERLYLAGTDVYAKI 170
Query: 152 -VFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQNPKWR 199
VF + + I D + +QP+ + T ++ C +
Sbjct: 171 VVFEETSEELIERIARDLSKIGNITLCIQPVSPTDKIKATTSKKKLFELMAICGRYVDVM 230
Query: 200 LSVQTHKFIG 209
+ Q HK++G
Sbjct: 231 CTPQIHKWMG 240
>gi|229100293|ref|ZP_04231179.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-29]
gi|229114880|ref|ZP_04244293.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock1-3]
gi|228668572|gb|EEL24001.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock1-3]
gi|228683123|gb|EEL37115.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-29]
Length = 220
Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ L+ L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFP-----------------QVNVSPENYIGFDFERFSLQPMDGP 179
Q+L V + + + + F LQ +
Sbjct: 111 PPSSGMKTDYQKLDAVIQKLAGKDISLKVVVFDDRDFEYAVKMHERYPSVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKKMNDAKVLPQLH 210
>gi|228914013|ref|ZP_04077635.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228926472|ref|ZP_04089544.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|229090395|ref|ZP_04221638.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-42]
gi|229183635|ref|ZP_04310858.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BGSC 6E1]
gi|228599878|gb|EEK57475.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BGSC 6E1]
gi|228692978|gb|EEL46696.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-42]
gi|228833296|gb|EEM78861.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228845618|gb|EEM90647.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 220
Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q+L V ++ + + +DFE F LQ +
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 210
>gi|228907074|ref|ZP_04070938.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis IBL 200]
gi|228852578|gb|EEM97368.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis IBL 200]
Length = 220
Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVT 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQNWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
Q+L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFQKLDAIIQKLAGKDISLKVVVFDDHDFEYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|228945040|ref|ZP_04107401.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228814709|gb|EEM60969.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
Length = 220
Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q+L V ++ + + +DFE F LQ +
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPDVPFFLQVGNED 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 210
>gi|229195638|ref|ZP_04322404.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus m1293]
gi|228587887|gb|EEK45939.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus m1293]
Length = 220
Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q+L V ++ + + +DFE F LQ +
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 210
>gi|229138128|ref|ZP_04266726.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-ST26]
gi|228645473|gb|EEL01707.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-ST26]
Length = 220
Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFP-----------------QVNVSPENYIGFDFERFSLQPMDGP 179
Q+L V + + + + F LQ +
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPEVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNNAKVLPQLH 210
>gi|73667685|ref|YP_303700.1| hypothetical protein Mbar_A0135 [Methanosarcina barkeri str.
Fusaro]
gi|72394847|gb|AAZ69120.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 258
Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 22/130 (16%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR 64
I+E+F ++QGEG + G F RFSGCNL C +CDTDF +
Sbjct: 10 PIREVFCSVQGEGPYVGARQAFVRFSGCNLN-----------CNYCDTDFSNPGTCNYEQ 58
Query: 65 YNVDQLADLIEE-------QWITGEKEGRY-CVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
+ + I+ + + + LTGGEPL+ D + +
Sbjct: 59 VEGSGIFEKIKNPVSISQLESMIRPFNKLHSVSLTGGEPLMHAD---FIEKLNLTSPLYL 115
Query: 117 ETNGTIEPPQ 126
E+N T+
Sbjct: 116 ESNMTLPEQA 125
>gi|229189524|ref|ZP_04316540.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus ATCC 10876]
gi|228593969|gb|EEK51772.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus ATCC 10876]
Length = 220
Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
+L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFHKLDAIIQKLAGKDISLKVVVFDDHDFEYAVKMHERYPKVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|229016691|ref|ZP_04173624.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH1273]
gi|229022903|ref|ZP_04179423.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH1272]
gi|228738438|gb|EEL88914.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH1272]
gi|228744599|gb|EEL94668.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH1273]
Length = 220
Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMSAEDIWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ L+ L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
Q+L V + + + + F LQ +
Sbjct: 111 PPSSAMHTDFQKLDDVIQKLAGKDISLKVVVFDDQDFEYAVKMHGRYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNCKEMNDAKVLPQLH 210
>gi|228932724|ref|ZP_04095596.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228826929|gb|EEM72691.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 220
Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P+L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q+L V ++ + + +DFE F LQ +
Sbjct: 111 PPSSTMNTDFQKLDDVIQKLAGKDISLKVVVFDDYDFEYAVKMHECYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 210
>gi|228900023|ref|ZP_04064259.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis IBL 4222]
gi|228964405|ref|ZP_04125519.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228795262|gb|EEM42754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228859637|gb|EEN04061.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis IBL 4222]
Length = 220
Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKNQIRQMTAEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G ++ + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGEKFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
Q+L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFQKLDAIIQKLAGKDISLKVVVFDDHDFEYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|228951823|ref|ZP_04113921.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228807746|gb|EEM54267.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar kurstaki str. T03a001]
Length = 220
Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
+L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFHKLDAIIEKLAGKDISLKVVVFDDHDFEYAVKMHERYPKVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKNLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|229068993|ref|ZP_04202286.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus F65185]
gi|229078627|ref|ZP_04211184.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock4-2]
gi|229177849|ref|ZP_04305222.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus 172560W]
gi|228605640|gb|EEK63088.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus 172560W]
gi|228704697|gb|EEL57126.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock4-2]
gi|228714105|gb|EEL65987.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus F65185]
Length = 220
Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
+L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFHKLDAIIQKLAGKDISLKVVVFDDHDFEYAVKMHERYPKVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKNLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|228984517|ref|ZP_04144694.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228775220|gb|EEM23609.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 220
Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q+L + +++ + + +DFE F LQ +
Sbjct: 111 PPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 210
>gi|138894535|ref|YP_001124988.1| organic radical activating protein [Geobacillus thermodenitrificans
NG80-2]
gi|134266048|gb|ABO66243.1| Organic radical activating enzyme [Geobacillus thermodenitrificans
NG80-2]
Length = 225
Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 79/228 (34%), Gaps = 51/228 (22%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ +CR+CD+ F G+ D+ +
Sbjct: 3 IGQKTMFVRTAGCD-----------YRCRWCDSAFTW-DGSAKEEIEQLTAEDIWQRLEA 50
Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + R+ ++GG P LL L+ L+++G ++AVET G+ +D + +SPK
Sbjct: 51 IGGRRFRHVTISGGNPLLLAALGELVALLHEKGVQVAVETQGSRWQDWLLDVDDVTISPK 110
Query: 137 AGC-------------------DLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSLQ 174
D LK+V + + E + + F LQ
Sbjct: 111 PPSSGMDTDWAMLDSIIRKLLADQNRTRRVSLKVVVFDEADLAYAKEVHRRYPGVPFYLQ 170
Query: 175 PMDGPFLEENTNLA-------ISYCFQN-------PKWRLSVQTHKFI 208
+ +TN + + + + Q H +
Sbjct: 171 TGNADVEALDTNALRMKLFDQLDWLVERVAQSDELNDVHVLPQLHTLL 218
>gi|229155009|ref|ZP_04283123.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus ATCC 4342]
gi|228628567|gb|EEK85280.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus ATCC 4342]
Length = 220
Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 75/220 (34%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q+L + +++ + + +DFE F LQ +
Sbjct: 111 PPSSTMKTDFQKLDAIIQKLSGKDISLKVVVFDDYDFEYAVKMHERYPDVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIEKAVNRKEMNNAKVLPQLH 210
>gi|228938557|ref|ZP_04101165.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228971436|ref|ZP_04132062.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228978049|ref|ZP_04138428.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis Bt407]
gi|228781710|gb|EEM29909.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis Bt407]
gi|228788303|gb|EEM36256.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228821155|gb|EEM67172.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326939066|gb|AEA14962.1| organic radical activating protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 220
Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
Q+L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFQKLDAIIQKLAGKDISLKVVVFDDHDFEYAVKMHERYPGVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|229029113|ref|ZP_04185211.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH1271]
gi|228732211|gb|EEL83095.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH1271]
Length = 220
Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
Q+L V + + + + F LQ +
Sbjct: 111 PPSSAMNTDFQKLDAVIQKLAGKDISLKVVVFDDQDFEYAVKMHERYPNVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|229172081|ref|ZP_04299646.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus MM3]
gi|228611424|gb|EEK68681.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus MM3]
Length = 220
Score = 82.3 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/220 (20%), Positives = 75/220 (34%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDVWNELVE 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQP-MDG 178
Q+L V ++ + + +DFE F LQ D
Sbjct: 111 PPSSAMNTDFQKLDAVIQKLAGKDISLKVVVFDDYDFEYAVNMHERYPDVPFFLQVGNDD 170
Query: 179 PFLEENTNLAISY-------------CFQNPKWRLSVQTH 205
++T L C + ++ Q H
Sbjct: 171 TKTVDDTMLIKKLLDKYEWLIDKAVNCKEMNNAKVLPQLH 210
>gi|229043184|ref|ZP_04190907.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH676]
gi|228726146|gb|EEL77380.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH676]
Length = 220
Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q L + ++ + + +DFE F LQ +
Sbjct: 111 PPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPKVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|167043382|gb|ABZ08085.1| putative Radical SAM superfamily protein [uncultured marine
crenarchaeote HF4000_ANIW141O9]
Length = 237
Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 46/250 (18%), Positives = 79/250 (31%), Gaps = 58/250 (23%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK I EIF +++GEG G +F R +GC C +CDT +
Sbjct: 1 MKT-RIFEIFTSIEGEGILYGTKTLFVRLAGCP-----------YSCFYCDTLDA-LPLD 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
G Y++ + +LI+ + + TGGEPL+Q + L + + RG +E+
Sbjct: 48 SGKEYSITEACNLIDTSLQDNTYKVNF---TGGEPLIQYEAVYELAKHVKARGLPTYLES 104
Query: 119 NGTIEPP-----QGIDWICVSPK---AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
ID++ + K + K ++ + S E +
Sbjct: 105 ACFDSKKFLYVLPSIDFVKIEFKTIDSEFIDKKHYPNLIRNTLECLQASIEAKKTTYIKT 164
Query: 171 FSLQPMDGPFLEENTNLAISYC-FQNP-------------------------------KW 198
+ +E +N +
Sbjct: 165 VISSKTELSSFKELLEQIFKIVSKENISGFIIQPTTSISEPPLEQLLEFYDNVYPYYDEV 224
Query: 199 RLSVQTHKFI 208
R+ Q HK I
Sbjct: 225 RVVPQLHKII 234
>gi|57866337|ref|YP_187967.1| exsD protein [Staphylococcus epidermidis RP62A]
gi|57636995|gb|AAW53783.1| exsD protein [Staphylococcus epidermidis RP62A]
Length = 212
Score = 81.9 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 33/190 (17%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
F R +GC+ +C +CD+ F G+ + ++ + G
Sbjct: 2 FVRTAGCD-----------YRCSWCDSAFTW-DGSAKEDIKLMTAEEIYDALLEIGGHRF 49
Query: 86 RYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG--TIEPPQGIDWICVSPKAGCDLK 142
+ ++GG P L++ L+ + A+ET G ID + +SPK
Sbjct: 50 NHVTISGGNPALIKGIQELVDLFEDKHIYTALETQGSRFQSWMTQIDDLTISPKPPSSGM 109
Query: 143 IKGGQELKLVFPQ------------VNVSPENYIGFDFER-----FSLQPMDGPFLEENT 185
+ L V Q + + ++ R F LQ + P+L++N
Sbjct: 110 KTNLEILDSVINQCTFHSLNLKVVIFDDADYDFAKLIHHRYPNIPFYLQ-VGNPYLDDNV 168
Query: 186 NLAISYCFQN 195
+ +
Sbjct: 169 DQHTDKLLER 178
>gi|228957714|ref|ZP_04119458.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|229126759|ref|ZP_04255771.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-Cer4]
gi|229144046|ref|ZP_04272462.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-ST24]
gi|229149643|ref|ZP_04277874.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus m1550]
gi|296502023|ref|YP_003663723.1| organic radical activating protein [Bacillus thuringiensis BMB171]
gi|228633853|gb|EEK90451.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus m1550]
gi|228639443|gb|EEK95857.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-ST24]
gi|228656699|gb|EEL12525.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-Cer4]
gi|228801957|gb|EEM48830.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|296323075|gb|ADH06003.1| organic radical activating protein [Bacillus thuringiensis BMB171]
Length = 220
Score = 81.9 bits (201), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
Q L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDHDFEYAVKMHERYPKVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|229108898|ref|ZP_04238502.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock1-15]
gi|228674554|gb|EEL29794.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock1-15]
Length = 220
Score = 81.5 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ +E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTPEDIWDELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLFILKENGMRTAIETQGSKWQDWLLQIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVF-----------------PQVNVSPENYIGFDFERFSLQPMDGP 179
Q L + + + + + F LQ +
Sbjct: 111 PPSSTMKTDFQRLDAIIQKLAGKDISLKVVVFDDHDFEYAVKMHERYPKVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|228920154|ref|ZP_04083503.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228839610|gb|EEM84902.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 220
Score = 81.1 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIRQMTAEDIWSELVA 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P L ++ + L + G A+ET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPALLKNIEFLLSILKENGMRTAIETQGSKWQDWLLEIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPEN-----YIGFDFER------------FSLQPMDGP 179
Q+L + ++ + + +DFE F LQ +
Sbjct: 111 PPSSTMKTDFQKLDAMIQKLAGKDISLKVVVFDDYDFEYAVKMHERYPKVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I +W ++ Q H
Sbjct: 171 TKTVDDAMLIKKLLDKYEWLIDKAVNCKEMNDAKVLPQLH 210
>gi|254361906|ref|ZP_04978039.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213]
gi|153093447|gb|EDN74435.1| hypothetical protein MHA_1513 [Mannheimia haemolytica PHL213]
Length = 55
Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 3 LYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ I EIF +LQGEG + G A+F RF CNL C +CDT++ +
Sbjct: 9 RFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLT-----------CPWCDTNYNQFEQW 55
>gi|150399835|ref|YP_001323602.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
gi|150012538|gb|ABR54990.1| Radical SAM domain protein [Methanococcus vannielii SB]
Length = 242
Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 74/250 (29%), Gaps = 57/250 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------GIQG 59
I+E+F ++ GEG G+ +F RF C L C +CD +
Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKQCPLD-----------CIYCDEPNTPEGMARVEEI 50
Query: 60 TKGGRYN--VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
G + +D +LI+ + TGGEPLL + L+ +G++
Sbjct: 51 PGSGLFTEYLDIDNELIQIIENLRTPDLFAVSFTGGEPLLYSQKIKEYSKILHDKGYKTF 110
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172
+E+NG + E + + + +
Sbjct: 111 LESNGMFPEKLSSYDYASIDIKLPEHFKDCDMEFWHELYRKELETIERLYYAKCNVYAKI 170
Query: 173 ---------------------------LQPMDGP------FLEENTNLAISYCFQNPKWR 199
+QP+ ++ ++ C +
Sbjct: 171 VVFEETSVELLEQIARDLSKIGDITLSIQPVTPTGDIIKTVSKKKIFEIMAICGRYVDVI 230
Query: 200 LSVQTHKFIG 209
+ Q HK++G
Sbjct: 231 CTPQIHKWMG 240
>gi|229102041|ref|ZP_04232754.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-28]
gi|228681428|gb|EEL35592.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus Rock3-28]
Length = 213
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 46/214 (21%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
F R +GC+ C +CD+ F G+ + D+ E G +
Sbjct: 2 FIRTAGCD-----------YSCSWCDSAFTW-DGSAKDQIRQMPAEDIWNELVEIGGENF 49
Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPKAGCDLK 142
+ ++GG P+L ++ L+ L + G A+ET G+ ID I +SPK
Sbjct: 50 SHVTISGGNPVLLKNIESLLSILKENGMRTAIETQGSKWQDWLLQIDEITISPKPPSSGM 109
Query: 143 IKGGQELKLVFP-----------------QVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
Q+L V + + + + F LQ + +
Sbjct: 110 KTDYQKLDAVIQKLAGKDISLKVVVFDDRDFEYAVKMHERYPSVPFFLQVGNDDTKTVDD 169
Query: 186 NLAISYCFQNPKW--------------RLSVQTH 205
+ I +W ++ Q H
Sbjct: 170 AMLIKKLLDKYEWLIEKAVNCKKMNDAKVLPQLH 203
>gi|297619956|ref|YP_003708061.1| Radical SAM domain protein [Methanococcus voltae A3]
gi|297378933|gb|ADI37088.1| Radical SAM domain protein [Methanococcus voltae A3]
Length = 247
Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 77/255 (30%), Gaps = 62/255 (24%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
I+E+F ++ GEG + G+ +F RF C L C +CD K
Sbjct: 2 IREVFSSIMGEGKYIGKRFIFVRFKKCPLN-----------CIYCDEPNTAEGIPKVEYI 50
Query: 66 N--------VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
+ D LIE + TGGEPL+ L ++G++
Sbjct: 51 SGSDVIKEVPDLQNCLIETIDELKTPDLFAISFTGGEPLVYSKYIETYAPKLREKGYKTF 110
Query: 116 VETNGTIE------PPQGIDWICVSPKAGCDLKIKGGQ-------ELK------------ 150
+E+NG I + D K + ELK
Sbjct: 111 LESNGMFPEAVKDAKYYDYASIDIKLPEHFDNVNKVIEWEDLYKKELKTIENLYKNGTEV 170
Query: 151 --LVFPQVNVSPENYIGFDFE-------RFSLQPMDG-------PFLEENTNLAISYCFQ 194
V N S E + +QP+ P ++ + C +
Sbjct: 171 YAKVVIFENTSNELIEKIAKDISNIGNITLCIQPITPIKGLDIKPPAQKKIFKIMELCGK 230
Query: 195 NPKWRLSVQTHKFIG 209
+ Q HK++
Sbjct: 231 YTDVMFTPQIHKWMN 245
>gi|169828572|ref|YP_001698730.1| coenzyme PQQ synthesis-like protein [Lysinibacillus sphaericus
C3-41]
gi|168993060|gb|ACA40600.1| coenzyme PQQ synthesis-like protein [Lysinibacillus sphaericus
C3-41]
Length = 224
Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 73/224 (32%), Gaps = 50/224 (22%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ ++ E
Sbjct: 3 VGQKTMFVRTAGCD-----------YSCSWCDSSFTW-DGSGKHLIVQMTAEEIWAELKR 50
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G Y ++GG P L ++ + A+ + ++AVET G+ ID + +SPK
Sbjct: 51 LGGNGFSYVTISGGNPALYANLEALIAILKENNIKVAVETQGSRWQNWMYDIDELTISPK 110
Query: 137 AGCDL------------------KIKGGQELKLVF---PQVNVSPENYIGFDFERFSLQP 175
A LK+V + + + + F F LQ
Sbjct: 111 APSSGMTTEYSVLVDIFGKLRLRNSHHHISLKIVVFTQEDYDFAKQIHHQFPTIPFYLQV 170
Query: 176 -------MDGPFLEENT-----NLAISYCF--QNPKWRLSVQTH 205
D L +N L S + ++ Q H
Sbjct: 171 GNDDLTTNDNSRLMKNLLDKYHALIDSVLKDEELKDVKVLPQLH 214
>gi|329766234|ref|ZP_08257792.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137293|gb|EGG41571.1| radical SAM domain-containing protein [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 237
Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/251 (19%), Positives = 83/251 (33%), Gaps = 58/251 (23%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK+ + EIF +++GEG G +F R +GC C +CDT +
Sbjct: 1 MKV-RLFEIFTSVEGEGILYGTKTLFVRLAGCPFT-----------CFYCDTK-ESLPLD 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G Y++++ LI+ + + TGG+PL+Q + L + + + +E+
Sbjct: 48 SGQEYSIEEACTLIDSNLKNQTYKVNF---TGGDPLIQHEAVAELAKHIQTKKIPTYLES 104
Query: 119 NG-------------------------------TIEPPQGIDWICVSPKAGC------DL 141
+ E C+ G +
Sbjct: 105 SCFDSDRFNHVLPFFDIVKIEFKTKDSDFVDLKHYERLIDNAMKCLKLSVGSKKTTYIKI 164
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK---W 198
+ +L+ VN D + F +QP G L Y P
Sbjct: 165 VVSSKTKLEDFKDLVNKIFNIISKKDIDGFIIQPTYGIAEPSLDLLLNLYDIVYPHYIDV 224
Query: 199 RLSVQTHKFIG 209
++ Q HKFIG
Sbjct: 225 KVVPQLHKFIG 235
>gi|254497309|ref|ZP_05110117.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12]
gi|254353537|gb|EET12264.1| hypothetical protein LDG_1789 [Legionella drancourtii LLAP12]
Length = 291
Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 69/205 (33%), Gaps = 52/205 (25%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F TLQGEG + G A F R + CNL C FCDT F + ++
Sbjct: 27 FFTLQGEGPYRGHPAYFIRLAKCNL-----------ACSFCDTYF---DSGEWRSFSSLL 72
Query: 70 LADLIEE------------QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAV 116
+ + W G + V+TGGEP LQ +V A +R F+ +
Sbjct: 73 VEADVVIAEFFKQRNLPIPAWGQGVAKKIVLVITGGEPSLQNNVSAFLAEAQRYFQYTQI 132
Query: 117 ETNGTI--EPPQGIDWICVSPK------------AGCDLKIKGGQELKLVFPQVNVSP-- 160
E+NGT + VSPK + LK V V P
Sbjct: 133 ESNGTSVLSDLPPSTTLVVSPKCLEKNGAAVRYLEPNVKMLARADYLKFVMSAPEVEPYL 192
Query: 161 ---------ENYIGFDFERFSLQPM 176
+ ++ + PM
Sbjct: 193 PYSEIPVWAHQWAAQTNKQVFISPM 217
>gi|167950638|ref|ZP_02537712.1| Radical SAM domain protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 136
Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRV-AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
M I EIF +LQGE AG A+ R S +CDT++
Sbjct: 7 MARLRISEIFYSLQGESRTAGLSTALVLRL----------NRLPSYVVSYCDTEYAF--- 53
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVET 118
+ G + + D +E R +TGGEPL + L+ +L ++G E+++ET
Sbjct: 54 SGGEWMELAAVLDQVER------SAARRICVTGGEPLAQTACIELLDSLLEQGCEVSLET 107
Query: 119 NGTIEPPQGIDWIC 132
+G ++ +
Sbjct: 108 SGALDISAVDPRVS 121
>gi|6066247|gb|AAF03232.1|AF156097_12 ORF12 [Pyrococcus furiosus]
Length = 218
Score = 79.2 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 8 EIFLTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT---------- 52
EIF + QGEGG GR +F RF+GC+L +C +CD+
Sbjct: 8 EIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDL-----------RCTYCDSRKYIDPRSVK 56
Query: 53 DFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQA 106
+ G++ N + ++I+ + TGGEP LQ+ L++
Sbjct: 57 KYRVEVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEK 116
Query: 107 LNKRGFEIAVETNGTIEP 124
+ G++ +ET+G
Sbjct: 117 AKELGYDNFLETHGGHPH 134
>gi|229010738|ref|ZP_04167935.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides DSM 2048]
gi|228750412|gb|EEM00241.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides DSM 2048]
Length = 220
Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/220 (18%), Positives = 70/220 (31%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIKQMTPEDIWNELVE 50
Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P LL+ L+ L + G AVET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVFP-----------------QVNVSPENYIGFDFERFSLQPMDGP 179
L V + + + + F LQ +
Sbjct: 111 PPSSTMKTDFHMLDSVIHKLAGKDFSLKVVVFDDQDFEYAVKMHERYPNVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I + +W ++ Q H
Sbjct: 171 TKTVDDAVLIKKLLEKYEWLIEKAVNCKEMNDAKVLPQLH 210
>gi|125973026|ref|YP_001036936.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
ATCC 27405]
gi|256004823|ref|ZP_05429798.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
DSM 2360]
gi|281417236|ref|ZP_06248256.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
JW20]
gi|125713251|gb|ABN51743.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
ATCC 27405]
gi|255991273|gb|EEU01380.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
DSM 2360]
gi|281408638|gb|EFB38896.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
JW20]
gi|316940739|gb|ADU74773.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
DSM 1313]
Length = 238
Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 29/197 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F TL G G F F GC L +C +C G Y
Sbjct: 11 ESFGTLDGPGIR------FVVFMQGCPL-----------RCIYCHNRDTW-DVNAGSEYT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
Q+ D + + + G +TGGEP+LQ D + + ++G A++TNG +
Sbjct: 53 PRQVIDEMMKYIDYIKVSGGGITVTGGEPVLQADFVAEVFRLAKEQGVHTALDTNGFADI 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMD 177
+ I + D+K + K++ N + + + + R+ L P
Sbjct: 113 EKVERLIKYTDLVLLDIKHAREDKHKIITGVSNEKIKRFALYLSDQGVPIWIRYVLVPGY 172
Query: 178 GPFLEENTNLAISYCFQ 194
E++ +A + +
Sbjct: 173 T-DDEDDLKMAADFIKK 188
>gi|229057068|ref|ZP_04196460.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH603]
gi|229132239|ref|ZP_04261095.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-ST196]
gi|229166276|ref|ZP_04294035.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH621]
gi|228617221|gb|EEK74287.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH621]
gi|228651177|gb|EEL07156.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus BDRD-ST196]
gi|228720209|gb|EEL71788.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus cereus AH603]
Length = 220
Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 46/220 (20%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + D+ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSAFTW-DGSAKDQIKQMTPEDIWNELVE 50
Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P LL+ L+ L + G AVET G+ ID + +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNMQFLLSILKENGMRTAVETQGSKWQDWLLQIDEVTISPK 110
Query: 137 AGCDLKIKGGQELKLVFP-----------------QVNVSPENYIGFDFERFSLQPMDGP 179
Q L V + + + + F LQ +
Sbjct: 111 PPSSTMKTDFQMLDSVIHKLAGKDFSLKVVVFDDQDFEYAVKMHERYPNVPFFLQVGNDD 170
Query: 180 FLEENTNLAISYCFQNPKW--------------RLSVQTH 205
+ + I + +W ++ Q H
Sbjct: 171 TKTVDDAVLIKKLLEKYEWLIEKAVNCKEMNDAKVLPQLH 210
>gi|161527549|ref|YP_001581375.1| radical SAM domain-containing protein [Nitrosopumilus maritimus
SCM1]
gi|160338850|gb|ABX11937.1| Radical SAM domain protein [Nitrosopumilus maritimus SCM1]
Length = 237
Score = 78.0 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/251 (19%), Positives = 79/251 (31%), Gaps = 58/251 (23%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
MK+ + EIF +++GEG G +F R +GC C +CDT +
Sbjct: 1 MKV-RLFEIFTSVEGEGILYGTKTLFVRLAGCPFT-----------CFYCDTK-ESLPLD 47
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVET 118
G Y+++ LI+ + + TGG+PL+Q + A + ++ +E+
Sbjct: 48 SGTEYSIEDANQLIDSNLKNQTYKVNF---TGGDPLIQHQAVALLAKHIQEKKIPTYLES 104
Query: 119 NG-------------------------------TIEPPQGIDWICVSPKAGCDLKIKG-- 145
+ E G C+
Sbjct: 105 SCFDIDRFNHVLPFIDIVKIEFKTKDSDFVDSQHYEKLIGHTMKCLESSVSAKKITYIKV 164
Query: 146 ----GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK---W 198
+ VN + D + F +QP G L Y P
Sbjct: 165 VVSSKTKPDDFTQLVNQIFDIVSKDDIDGFIIQPTYGVAEPSLDLLLSLYDIVFPHYNEV 224
Query: 199 RLSVQTHKFIG 209
++ Q HKFIG
Sbjct: 225 KVVPQLHKFIG 235
>gi|332179391|gb|AEE15080.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
Length = 216
Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 88/239 (36%), Gaps = 57/239 (23%)
Query: 3 LYSIKEIFLTLQGE------GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
+ +I IF ++ GE G R GCNL +CR+CDT
Sbjct: 1 MIAIHSIFESISGEVGFMPQGSW----CTIVRLQGCNL-----------RCRWCDTKD-S 44
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIA 115
++D++ D + + ++TGGEPL+Q + LI L +R +
Sbjct: 45 QSIEAKYMLSIDEVIDRCKNHKV---------LITGGEPLIQEETLKLIDRLIERHHFVQ 95
Query: 116 VETNGTIEPPQGIDWIC------VSPKAGCDLKIKGGQELKLVFPQVNVSPE---NYIGF 166
+ETNG+I P G C P +G ++ +E + + V + +
Sbjct: 96 IETNGSIFLPSGYSSDCGWVVDYKGPSSGMMDRMPSFEEFIDNWIEHRVIVKLVVDNSKE 155
Query: 167 DFERFS--LQPMDGPFLEENTNL---------AISYCFQN-----PKWRLSVQTHKFIG 209
D E L M G F + L +++ + S+Q HK +G
Sbjct: 156 DLEFVFQILSKMYGLFQFAISPLDAKGEKILDIVNFIRERDEKLLGDLIFSIQMHKVVG 214
>gi|21226857|ref|NP_632779.1| hypothetical protein MM_0755 [Methanosarcina mazei Go1]
gi|20905160|gb|AAM30451.1| conserved protein [Methanosarcina mazei Go1]
Length = 255
Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 22/127 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E+F ++QGEG + G F RFSGCNL C +CDT+F R
Sbjct: 13 EVFCSVQGEGPYVGMRQAFVRFSGCNLS-----------CNYCDTNFRNPGTYDYERVEG 61
Query: 68 DQLADLI--------EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ + + E + K+ LTGGEPLL D + +E+N
Sbjct: 62 SGVFEKVSNPVNIEKLESMLQPFKDLHSVSLTGGEPLLHAD---FIEKLNLSVPLYLESN 118
Query: 120 GTIEPPQ 126
T+
Sbjct: 119 MTLPEQA 125
>gi|228990442|ref|ZP_04150407.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus pseudomycoides DSM 12442]
gi|229004193|ref|ZP_04161994.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock1-4]
gi|228757054|gb|EEM06298.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock1-4]
gi|228768968|gb|EEM17566.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus pseudomycoides DSM 12442]
Length = 220
Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 48/221 (21%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + ++ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSSFTW-DGSAKEQIRQMTPEEIWSELVE 50
Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P LL+ + L ++ A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIDDFLSLLQEKQIRTAIETQGSKWQEWLLHIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQV-----------------NVSPENYIGFDFERFSLQP---- 175
L V ++ + + + + F LQ
Sbjct: 111 PPSSQMKTDFIMLDSVIERLAGKDFSLKVVVFDDHDFEYAIKVHERYPHVPFFLQVGNDD 170
Query: 176 ---MDGPFLEEN--------TNLAISYCFQNPKWRLSVQTH 205
+D L N A+ +C + ++ Q H
Sbjct: 171 TKTVDDAILIRNLLQKYEWLIEKAV-HCKEMNDAKVLPQLH 210
>gi|228996543|ref|ZP_04156182.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock3-17]
gi|228763175|gb|EEM12083.1| 7-cyano-7-deazaguanosine (PreQ0) biosynthesis protein QueE
[Bacillus mycoides Rock3-17]
Length = 220
Score = 75.3 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 48/221 (21%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G+ +F R +GC+ C +CD+ F G+ + ++ E
Sbjct: 3 VGQKTMFIRTAGCD-----------YSCAWCDSSFTW-DGSAKEQIRQMTPEEIWSELVE 50
Query: 80 TGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPK 136
G + + ++GG P LL+ + L ++ A+ET G+ ID I +SPK
Sbjct: 51 IGGENFSHVTISGGNPVLLKNIDDFLSLLQEKQIRTAIETQGSKWQEWLLHIDEITISPK 110
Query: 137 AGCDLKIKGGQELKLVFPQV-----------------NVSPENYIGFDFERFSLQP---- 175
L V ++ + + + + F LQ
Sbjct: 111 PPSSQMKTDFIMLDSVIERLAGKDFSLKVVVFDDHDFEYAIKVHKRYPHVPFFLQVGNDD 170
Query: 176 ---MDGPFLEEN--------TNLAISYCFQNPKWRLSVQTH 205
+D L N A+ +C + ++ Q H
Sbjct: 171 TKTVDDAILIRNLLQKYEWLIEKAV-HCKEMNDAKVLPQLH 210
>gi|225376505|ref|ZP_03753726.1| hypothetical protein ROSEINA2194_02147 [Roseburia inulinivorans DSM
16841]
gi|225211677|gb|EEG94031.1| hypothetical protein ROSEINA2194_02147 [Roseburia inulinivorans DSM
16841]
Length = 278
Score = 75.3 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 30/182 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R VF F GC +C++C + G
Sbjct: 22 ETFGTVDGPGV---RFVVF--FQGCP-----------MRCQYCHNPDTW-KIEDGEEMTA 64
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D++ D E + TGGEP+LQ+D L ++G ++T+G + P
Sbjct: 65 DEIIDRFERNRSF--YQTGGITATGGEPMLQLDFLTELFTKAKEKGIHTCLDTSGIMFPK 122
Query: 126 QGIDWICVSPKA---------GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
+ S + +++ ++L V V + ++ + ++ + QP
Sbjct: 123 KHTGTDQNSEREISLTGISENMASDRMEKIEQLMSVTDLVMLDIKHINDEEHQKLTGQPN 182
Query: 177 DG 178
Sbjct: 183 SN 184
>gi|45357640|ref|NP_987197.1| radical SAM domain-containing protein [Methanococcus maripaludis
S2]
gi|45047200|emb|CAF29633.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 242
Score = 74.5 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 46/250 (18%), Positives = 80/250 (32%), Gaps = 57/250 (22%)
Query: 6 IKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD-------TDFVGIQ 58
I+E+F ++ GEG G+ +F RF C L C +CD T V
Sbjct: 2 IREVFSSIMGEGKFIGKRFIFVRFKECPLD-----------CIYCDEPNAPGGTARVEEI 50
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
++ + E + TGGEPL+ + L +G++
Sbjct: 51 SGSCEFMEYLEIEHELIEIIEKLRTPDLFAVSFTGGEPLVYSNKIKEYSEILKHKGYKTF 110
Query: 116 VETNGTIE-PPQGIDWICVSPKAGCDLKIKGGQ--------ELKL--------------- 151
+E+NG D+ + K + K EL+
Sbjct: 111 LESNGMFPERLGSYDYASIDIKLPEHFENKDDDFWYGLYKKELETIERLYLAGTDVYAKI 170
Query: 152 -VFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTN------LAISYCFQNPKWR 199
VF + + I D + +QP+ + T ++ C +
Sbjct: 171 VVFEETSEELIERIAIDLSKIGNITLCIQPVSPTDKIKTTTSKKKIFELMAICGKYVDVM 230
Query: 200 LSVQTHKFIG 209
+ Q HK++G
Sbjct: 231 CTPQIHKWMG 240
>gi|229543199|ref|ZP_04432259.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1]
gi|229327619|gb|EEN93294.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1]
Length = 245
Score = 74.5 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 34/206 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R VF GC L +C+FC + +G +V
Sbjct: 11 ESFGTVDGPGI---RYVVF--TQGCPL-----------RCKFCHNPDTW-KINEGNEMSV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+++ + + + G ++GGEPLL +D + L +A + G A++T G
Sbjct: 54 EEIMSDVRDYLPFIKASGGGITVSGGEPLLHLDFLIELFKACKEIGVHTAIDTAGGCFSR 113
Query: 126 QGIDWICVSPKAGC------DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD-- 177
+ D+K ++ K + N ++ + ++ P+
Sbjct: 114 SLRFMEKLDELMKYTNLVLLDIKHIDPEKHKWLTGMSNEHILDFARYLADKHI--PVWIR 171
Query: 178 -----GPFLEENTNLAISYCFQNPKW 198
EE+ + P
Sbjct: 172 HVLVPSVDSEEDLQKTSDFIHSLPNV 197
>gi|239628873|ref|ZP_04671904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519019|gb|EEQ58885.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 255
Score = 71.5 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 33/174 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G +F SGC +C +C G
Sbjct: 10 VESFGTVDGPGIRM---VIF--LSGCP-----------MRCLYCHNPDTW-DPKGGNPMT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ E+ +K ++GGEPL+Q+ L +A R ++T+G
Sbjct: 53 VEEILAQFEQARPFYKKG--GITVSGGEPLMQIRFVTELFEAARARNIHTCLDTSG---- 106
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
++ + + L V V + ++ + + QP D
Sbjct: 107 --------ITFNPSSEGIMAMFDRLMAVTDLVMLDIKHIDPEEHIKLCAQPQDN 152
>gi|257459146|ref|ZP_05624265.1| radical SAM domain protein [Campylobacter gracilis RM3268]
gi|257443531|gb|EEV18655.1| radical SAM domain protein [Campylobacter gracilis RM3268]
Length = 321
Score = 71.5 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 5 SIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWS-----GREQDRLSAQCRFCDT 52
+ E FL++QGEG +AGR+A F RF+GCNL R + R CDT
Sbjct: 2 RLVESFLSIQGEGKYAGRLAFFFRFAGCNLRCAGFGGERVSPKTGEILRGCDT 54
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 46/147 (31%), Gaps = 31/147 (21%)
Query: 80 TGEKEGRYCVLTGGEPLLQVDV----PLIQALNKRGFEIAVETNGTIEPPQGID------ 129
+ ++TGGEP+L I L RG+E+ ETNGTI
Sbjct: 156 AKLHQKPIIIITGGEPMLHHKEALFYEFICELLARGYEVHFETNGTILVDFEKFPAYKSS 215
Query: 130 WICVSPKAGCDLKIKGGQE----------------LKLVF-PQVNVSPENYIGFDFE--R 170
VSPK + + + K V P+ + PE
Sbjct: 216 VFAVSPKLSNSAEPRERRLNFAALRNLKQNAKDSFYKFVISPEFDAQPEIREILAACESE 275
Query: 171 FSLQP--MDGPFLEENTNLAISYCFQN 195
P D LE + +C +N
Sbjct: 276 VYCMPRGADRRELESGAQFCVDFCLKN 302
>gi|168335509|ref|ZP_02693590.1| pyruvate formate-lyase activating enzyme [Epulopiscium sp. 'N.t.
morphotype B']
Length = 243
Score = 71.1 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 32/189 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC L +C++C +G+ G +
Sbjct: 8 VESCGTVDGPGI---RYIIF--TQGCPL-----------RCQYCHNPDTW-KGSDGEEMD 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D L I + ++ ++GGEPLLQ + + + + K+G ++T+G I
Sbjct: 51 SDALVKEILKYKAYMDRSNGGITISGGEPLLQREFVTDIFKKVKKKGIHTCIDTSGFIPL 110
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ D + + D+K K V V+ E + F ++ N
Sbjct: 111 DKIGDILDYTDLVLLDIKSYNPAIYKKV---TGVALEPTLKFA----------QELMKRN 157
Query: 185 TNLAISYCF 193
+ I Y
Sbjct: 158 IPVWIRYVL 166
>gi|289423463|ref|ZP_06425265.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus
anaerobius 653-L]
gi|289156097|gb|EFD04760.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus
anaerobius 653-L]
Length = 243
Score = 71.1 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 66/203 (32%), Gaps = 31/203 (15%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M I E F T+ G G F F GC L +CRFC
Sbjct: 1 MTKGRIHSYETFGTVDGPGIR------FVLFTQGCPL-----------RCRFCHNRDTWE 43
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
G G D++ D + E G ++GGE LQ D + + K G
Sbjct: 44 TG-IGTEMTPDEVIDEYMKYKTYYETSGGGITVSGGEASLQADFVTEVFRLAKKNGVHTC 102
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------ 169
++T+G +E + + + + DLK + K + + + E
Sbjct: 103 LDTSGFVEIDKIKELLDYTDLVLLDLKHMDPERSKWLTGASSEKAMQLARYLDERNIPVW 162
Query: 170 -RFSLQPMDGPFLEENTNLAISY 191
R L P EN L +
Sbjct: 163 LRHVLIPG-ITDSRENLELMADF 184
>gi|154500609|ref|ZP_02038647.1| hypothetical protein BACCAP_04282 [Bacteroides capillosus ATCC
29799]
gi|150270498|gb|EDM97807.1| hypothetical protein BACCAP_04282 [Bacteroides capillosus ATCC
29799]
Length = 253
Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G R VF F GC +C +C G
Sbjct: 12 VESFGTVDGPGI---RFVVF--FQGCP-----------MRCLYCHNPDTW-GTEGGTEMT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD+L + G TGGEPLLQ+ L A ++G ++T+G +
Sbjct: 55 VDELLAAYQRNK--GFYRQGGITATGGEPLLQLPFLTELFTAAKEQGIHTCLDTSGIVYR 112
Query: 125 PQG 127
P
Sbjct: 113 PDH 115
>gi|320535961|ref|ZP_08036025.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
F0421]
gi|320147188|gb|EFW38740.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
F0421]
Length = 239
Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 61/202 (30%), Gaps = 30/202 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G R VF GC L +C++C Q
Sbjct: 7 HESFGTVDGPGI---RYVVF--LQGCPL-----------RCKYCHNCDTWFQKDAKFVET 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
++ + I + +TGGEPL+Q + L + K G A++T+G
Sbjct: 51 AEETFEKIIKYKRFIRSG--GVTVTGGEPLMQPEYVCELFKLCKKEGIHTAIDTSGIYLN 108
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD------- 177
+ + V+ D K E L V P + PM
Sbjct: 109 DAVREALKVTDLVLLDYKA-ADPETHLELTGVPQQPILNFLAYLCEIN-MPMWIRHVVIP 166
Query: 178 -GPFLEENTNLAISYCFQNPKW 198
E+ S+ P
Sbjct: 167 GITDKPEDLEKIASFIKTLPNV 188
>gi|284122655|ref|ZP_06386869.1| radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829337|gb|EFC33735.1| radical SAM domain protein [Candidatus Poribacteria sp. WGA-A3]
Length = 164
Score = 69.2 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 53/161 (32%), Gaps = 25/161 (15%)
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
L ++++ +TGGEPL Q LI L + FE+ +ET+G I+
Sbjct: 1 MSLEAVVDQ---VKGYGCSLVEVTGGEPLAQPAAFELITRLCEERFEVLIETSGAIDVAP 57
Query: 127 GIDWICV-------------SPKAGCDLKIKGGQELKLVFPQVNVSP------ENYIGFD 167
+ + I+ ++K V + Y +
Sbjct: 58 VDPRASIILDVKCPGSEMDDRMRWENLQAIRQKDQVKFVIGDRCDYDWAVEVVKRYRLTE 117
Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
P+ G +E LA RL VQ HKFI
Sbjct: 118 KCPVLFSPVFG--AQELQPLAEWLLQDRLPVRLQVQLHKFI 156
>gi|160937727|ref|ZP_02085087.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC
BAA-613]
gi|158439372|gb|EDP17124.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC
BAA-613]
Length = 259
Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 39/176 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G +F SGC +C +C G
Sbjct: 18 ESFGTVDGPGIRM---VIF--LSGCP-----------MRCLYCHNPDTW-DPKGGSPMTA 60
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
+++ D E+ +K ++GGEPL+Q+ L + K G ++T+G P
Sbjct: 61 EEILDQYEQARPFYKKG--GITVSGGEPLMQIGFVTELFEKAKKSGIHTCLDTSGITFNP 118
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE---RFSLQPMDG 178
+ + ++ + D + + QP D
Sbjct: 119 GSQAVMA---------------HFDRLLASTDLILLDIKHIDPKEHVKLCAQPQDN 159
>gi|257452751|ref|ZP_05618050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
gi|257466612|ref|ZP_05630923.1| pyruvate formate-lyase activating enzyme [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917767|ref|ZP_07914007.1| pyruvate formate-lyase activating enzyme [Fusobacterium
gonidiaformans ATCC 25563]
gi|317059292|ref|ZP_07923777.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
gi|313684968|gb|EFS21803.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
gi|313691642|gb|EFS28477.1| pyruvate formate-lyase activating enzyme [Fusobacterium
gonidiaformans ATCC 25563]
Length = 241
Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 48/177 (27%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
MK Y I E F T G G F GC L +CR+C
Sbjct: 1 MKAY-INSFESFGTKDGPGIR------FVLFLQGCPL-----------RCRYCHNVDAWN 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
Y +++ + + + ++GGEPLLQ D Q +K G A
Sbjct: 43 LQHPNYIYTSEEILEEVNRVKVFLTGG---ITISGGEPLLQADFVKEFFQLCHKNGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
++T+G I +++K V + ++ + D E++
Sbjct: 100 LDTSGYI----------------------FTEKVKEVLEETDLVLLDLKHIDSEKYY 134
>gi|210623576|ref|ZP_03293902.1| hypothetical protein CLOHIR_01852 [Clostridium hiranonis DSM 13275]
gi|210153446|gb|EEA84452.1| hypothetical protein CLOHIR_01852 [Clostridium hiranonis DSM 13275]
Length = 246
Score = 68.8 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 65/205 (31%), Gaps = 33/205 (16%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E F T+ G G R VF GC L +C++C +
Sbjct: 1 MVKGRIHSIETFGTVDGPGI---RYIVF--LQGCPL-----------RCKYCHNRDTWNK 44
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAV 116
G +++ + E G +GGE Q L + K G +
Sbjct: 45 -NGGTEKTAEEVVQDALKYKTYMEFSGGGLTASGGEATAQPEFLYELFKEAKKNGLNTCL 103
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP-QVNVSPENYIGFDFERFSLQP 175
+T+G + + ++ DLK ++ K + +N + E D + P
Sbjct: 104 DTSGCTKATDIAHILELTDTVLLDLKHLIPEDAKSLAGIDINSAIEFAKYLDEKNI---P 160
Query: 176 MDG--------PFLEENTNLAISYC 192
+ EEN N +
Sbjct: 161 VWIRHVLVPGVTDSEENLNKMGEFV 185
>gi|302874687|ref|YP_003843320.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
743B]
gi|302577544|gb|ADL51556.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
743B]
Length = 240
Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/212 (22%), Positives = 69/212 (32%), Gaps = 38/212 (17%)
Query: 1 MKLYSIKEIFLT---LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M + + F + L G G R VF GCNL +C +C
Sbjct: 1 MTVGRVH-SFESMGLLDGPGI---RNIVF--LQGCNL-----------RCLYCHNPDTW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
G Y +QL I EK G +GGEPLLQ + ++ + G A
Sbjct: 43 ACNGGTEYTPEQLLKKIVRFKPYFEKSGGGVTFSGGEPLLQYNFLIEALKLCKENGIHTA 102
Query: 116 VETNG-----TIEPPQGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYIG 165
++T G E + D + + K ++K K E K + S
Sbjct: 103 IDTAGVGMGNYEEVLKYTDLVLLDIKHYDEIKYKEITGRDNSEFKKFLEALKNSNSKVWI 162
Query: 166 FDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
R + P E+ L Y P+
Sbjct: 163 ----RHVVVPGINDTKEDVLALC-EYIKDIPR 189
>gi|150389978|ref|YP_001320027.1| pyruvate formate-lyase activating enzyme [Alkaliphilus
metalliredigens QYMF]
gi|149949840|gb|ABR48368.1| pyruvate formate-lyase activating enzyme [Alkaliphilus
metalliredigens QYMF]
Length = 248
Score = 68.0 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R +F F GC L +C++C G V
Sbjct: 11 ETFGTVDGPGI---RYIIF--FQGCPL-----------RCKYCHNRDTW-DLQGGKEMTV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
D++ I++ G ++GGEP LQ+ L+ + K A++T+G +
Sbjct: 54 DEVISDIKKYIPFMVSSGGGVTISGGEPTLQMEFLTALLLEIKKLNLHTAIDTSGFVH 111
>gi|330721755|gb|EGG99747.1| Queuosine Biosynthesis QueE Radical SAM [gamma proteobacterium
IMCC2047]
Length = 164
Score = 68.0 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 23/153 (15%)
Query: 77 QWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNG-------TIEPPQGI 128
+ R+ +TGGEPL + L+ L R +++++ET+G + +
Sbjct: 7 LGEVDKYASRHVTVTGGEPLAQPKVLKLLAELCDRDYQVSLETSGAVTLEGVDQRVVKVM 66
Query: 129 DWICVSPKAGCDLKIKG------GQELKLVFPQVNVSPENYIGFD-------FERFSLQP 175
D + + + ++K V + D + P
Sbjct: 67 DLKTPASQECHRNLYENIDLLNTHDQVKFVICDRQDYDWAKMQIDQYSLTERVDEVLFSP 126
Query: 176 MDGPFLEENTNLAISYCFQNPKWRLSVQTHKFI 208
G LA + R +Q HK++
Sbjct: 127 SHGEL--TGAQLAEWILDDGLQVRFQLQLHKYL 157
>gi|326202609|ref|ZP_08192477.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens
DSM 2782]
gi|325987193|gb|EGD48021.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens
DSM 2782]
Length = 240
Score = 68.0 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 29/196 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC L +C++C Y
Sbjct: 11 ETFGTVDGPGIR------FIVFLKGCPL-----------RCKYCHNRDAWS-SEGAKLYT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
++ + + E ++GGEPL+Q D L + + G AV+T+G +
Sbjct: 53 PQEVMKELLKYKNFIEASHGGITVSGGEPLIQQDFVRELFKLCREAGIHTAVDTSGYVNV 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMD 177
+ + + DLK ++ + N + + + E R+ L P
Sbjct: 113 EDVKETLEYTDLVLLDLKQANAKKHLDLTGVENERIKLFTSYLGEIGKPVWIRYVLVPGY 172
Query: 178 GPFLEENTNLAISYCF 193
EE+ A +Y
Sbjct: 173 T-DNEEDLLAAYNYLK 187
>gi|220929980|ref|YP_002506889.1| pyruvate formate-lyase activating enzyme [Clostridium
cellulolyticum H10]
gi|220000308|gb|ACL76909.1| pyruvate formate-lyase activating enzyme [Clostridium
cellulolyticum H10]
Length = 240
Score = 68.0 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 29/196 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC L +C++C Y+
Sbjct: 11 ETFGTVDGPGIR------FIVFLKGCPL-----------RCKYCHNRDAWS-SEGAKLYS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
++ I++ + ++GGEPL+Q + L + + G AV+T+G +
Sbjct: 53 PQEVLKEIQKYRNFIDASHGGITVSGGEPLIQHEFVKELFKLCREAGIHTAVDTSGYVNV 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMD 177
D + + DLK Q+ + N + + + E R+ L P
Sbjct: 113 EDVKDTLEYTDLVLLDLKQANAQKHLELTGVENKRIKLFTTYLGEIGKPVWIRYVLIPGY 172
Query: 178 GPFLEENTNLAISYCF 193
EE+ A +Y
Sbjct: 173 T-DGEEDLLAAYNYLK 187
>gi|294337988|emb|CBJ93826.1| hypothetical phage protein [Campylobacter phage CP220]
gi|294338182|emb|CBJ94219.1| hypothetical phage protein [Campylobacter phage CPt10]
Length = 264
Score = 67.6 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 78/240 (32%), Gaps = 60/240 (25%)
Query: 8 EIFL-TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCR----------FCDT---- 52
E F T+QGEG + AVF R +GCN C CDT
Sbjct: 14 EFFGDTIQGEGPRL-KSAVFVRVAGCNNTCK------GFGCSAVAPDGSAVTGCDTIRAV 66
Query: 53 --DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK- 109
F ++ + D + + K + +LTGGEPLL + +IQ
Sbjct: 67 SPKFKSQWKYFDNFKDLTSIIDPLVAFKNSEIKHTKDIILTGGEPLLYWNTNVIQDFLAY 126
Query: 110 ---RGFEIAVETNG-----TIEPPQGIDWICVSPKAGCDLKIKG---------------- 145
R +I +ETN + Q +S K C + K
Sbjct: 127 YISRKHQITIETNASLDIEFFKEYQKEIMFSMSVKLSCSGEPKKKRINIKTISKILENCP 186
Query: 146 GQELKLVFP----QVNVSPENYIGFD---FERFSLQPMDGPFLE---ENTNLAISYCFQN 195
LK V + + I +D + L PM G E +NT C ++
Sbjct: 187 KSYLKFVVNPETWDTDYAEIKEILYDLPIYTEVYLMPM-GETRELQIKNTPFVFEKCAEH 245
>gi|304315595|ref|YP_003850740.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777097|gb|ADL67656.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 242
Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 29/203 (14%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M + I E T+ G G R VF GC +C +C
Sbjct: 1 MVMGKIHSIETCGTVDGPGV---RYVVFM--QGC-----------LLRCAYCHNPDTWH- 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAV 116
G + D++ + ++ + G LTGGEP LQ L + L A+
Sbjct: 44 LNDGKEASTDEIFNDVKRYIPYMKASGGGVTLTGGEPTLQVEFCTDLFKKLKAENIHTAI 103
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------- 169
+T+G ++ + + + + D+K E K + N + + +
Sbjct: 104 DTSGFVDIEKVEELVKYTDLFLLDIKHIDDDEHKKLTGVSNRKTLKFAKYLSDIDKKVWI 163
Query: 170 RFSLQPMDGPFLEENTNLAISYC 192
R + P +EE LA +
Sbjct: 164 RHVIVPGITDDMEEIKKLA-DFV 185
>gi|302384753|ref|YP_003820575.1| pyruvate formate-lyase activating enzyme [Clostridium
saccharolyticum WM1]
gi|302195381|gb|ADL02952.1| pyruvate formate-lyase activating enzyme [Clostridium
saccharolyticum WM1]
Length = 257
Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 26/177 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G +F GC +C++C + G
Sbjct: 9 ESFGTVDGPGVRM---VIF--LQGCP-----------MRCQYCHNPDTW-KMAGGTPMTA 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
++L E G TGGEPL+Q+D L +A K+ ++T+G +
Sbjct: 52 EELLKQFES--SRNFYRGGGITATGGEPLMQLDFVTELFEAAKKKDIHTCLDTSGVMFHR 109
Query: 126 QGIDWICVSPK--AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ---PMD 177
G D++ + DL + + + +V N DF R+ Q P+
Sbjct: 110 NGPDYLNKIDRLLEHTDLVMLDIKHMDDPKHKVLTGQSNENILDFARYLSQKEIPVW 166
>gi|330506424|ref|YP_004382852.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
gi|328927232|gb|AEB67034.1| radical SAM domain protein [Methanosaeta concilii GP-6]
Length = 185
Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GR A+F R SGCNL CDTD L + E
Sbjct: 1 MGRPALFIRLSGCNLNCEG-----------CDTDLK------------PSLDLSVLELLK 37
Query: 80 TGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP----QGIDWICV 133
E +G+ ++TGGEP + V LI L RG EI +E+NGT P + I V
Sbjct: 38 RIEGQGKRVIITGGEPTLQMNELVDLICRLYSRGMEIHIESNGTNTIPLDILEKICCAVV 97
Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
SPK G D + V + + ++ + E L P+
Sbjct: 98 SPKRGSDFNLGFWANKSNVHLKFVLGKPDWCWNEKELKQLIPI 140
>gi|229918072|ref|YP_002886718.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sp. AT1b]
gi|229469501|gb|ACQ71273.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sp. AT1b]
Length = 238
Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 47/210 (22%)
Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M + + E F T+ G G F F GC L +C +C
Sbjct: 1 MTMGYVHSVESFGTVDGPGIR------FIVFLQGCAL-----------RCLYCHNADTW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
K + + + E ++GG+PL Q L++ K G
Sbjct: 43 DFKKNNHRSAEDVIQEALSYRPFMEASKGGITISGGDPLAQPEFLEALLREAKKHGLHTT 102
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF-----DFER 170
++T+G + PP + LV + ++ +
Sbjct: 103 LDTSGALRPPNLDAIL---------------DHTDLVLLDIKHIDDDMCKKLTGRSNANT 147
Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPKWRL 200
+L E T + I + P W L
Sbjct: 148 LAL---AEHLSERGTKMWIRHVLV-PGWTL 173
>gi|295402436|ref|ZP_06812389.1| pyruvate formate-lyase activating enzyme [Geobacillus
thermoglucosidasius C56-YS93]
gi|312112710|ref|YP_003991026.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1]
gi|294975527|gb|EFG51152.1| pyruvate formate-lyase activating enzyme [Geobacillus
thermoglucosidasius C56-YS93]
gi|311217811|gb|ADP76415.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1]
Length = 249
Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 26/188 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R +F GC +C++C G G V
Sbjct: 9 ESCGTVDGPGL---RYVIF--TQGC-----------VLRCQYCHNADTWEIGK-GKEMTV 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+++ D ++ ++GGEPLLQ+D + L +A K G A++++G
Sbjct: 52 EEIIDDVKTYLPFINASNGGITVSGGEPLLQIDFLIELFKACKKLGIHTAIDSSGGCYTT 111
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+ S + + + + L ++ + + LQ E+N
Sbjct: 112 EA------SFQQKLNELLSYTDLILLDLKHIDEKKHRKLTGKTNKHILQ-FAQFLSEKNV 164
Query: 186 NLAISYCF 193
+ I +
Sbjct: 165 PVWIRHVL 172
>gi|223986638|ref|ZP_03636631.1| hypothetical protein HOLDEFILI_03953 [Holdemania filiformis DSM
12042]
gi|223961386|gb|EEF65905.1| hypothetical protein HOLDEFILI_03953 [Holdemania filiformis DSM
12042]
Length = 143
Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 23/135 (17%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E F T+ G G R+ VF GC +CR+C
Sbjct: 1 MSEGRIHSLESFGTVDGPGV---RLVVFV--QGCP-----------MRCRYCHNPDTWR- 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAV 116
G + ++ + G ++GGEPL L+ L A + G +
Sbjct: 44 SEGGQTMSAAEILQTYKRN--EAFYRGGGITVSGGEPLGQLKFVTELFAAAKQAGIHTCL 101
Query: 117 ETNGTIEPPQGIDWI 131
+T+G + P +
Sbjct: 102 DTSGILFDPSHPEEF 116
>gi|213418906|ref|ZP_03351972.1| hypothetical protein Salmonentericaenterica_14054 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 76
Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 144 KGGQELKLV------FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
+ E+K ++ +LQP+ E+ T L I C
Sbjct: 6 ERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-N 62
Query: 198 WRLSVQTHKFIGI 210
WRLS+QTHK++ I
Sbjct: 63 WRLSMQTHKYLNI 75
>gi|160880951|ref|YP_001559919.1| pyruvate formate-lyase activating enzyme [Clostridium
phytofermentans ISDg]
gi|160429617|gb|ABX43180.1| pyruvate formate-lyase activating enzyme [Clostridium
phytofermentans ISDg]
Length = 250
Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 25/165 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R VF GC +C++C + G +V
Sbjct: 9 ESFGTVDGPGI---RFVVF--LQGCP-----------MRCQYCHNPDTW-ELNGGTLRSV 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+ + + + +TGGEPLLQ++ L + K+G ++T+G P
Sbjct: 52 EDILKEYDSYKEFLKGG--GITVTGGEPLLQLEFVTELFEEAKKKGIHTCIDTSGITFRP 109
Query: 126 QGI----DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ V+ D+K + K + N + + F
Sbjct: 110 ADKEKYLPLLKVTDLVMLDIKQMNAIKHKELTGHDNANILEFARF 154
>gi|269123081|ref|YP_003305658.1| pyruvate formate-lyase activating enzyme [Streptobacillus
moniliformis DSM 12112]
gi|268314407|gb|ACZ00781.1| pyruvate formate-lyase activating enzyme [Streptobacillus
moniliformis DSM 12112]
Length = 247
Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 32/202 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T G G F GC L +C +C
Sbjct: 13 ESFGTKDGPGIR------FVLFLQGCPL-----------RCLYCHNVDTWNLKDHKRLMT 55
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+++ I + + ++GGEPLLQ D + L + + G ++T+G I
Sbjct: 56 PEEVFKEIMKVRGFIKTG--GVTVSGGEPLLQSDFIIELFKLCKEAGIHTCIDTSGYIFT 113
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP--------ENYIGFDFERFSLQPM 176
+ I ++ D+K ++ K V VN++P E+ + R+ L P
Sbjct: 114 EKSKQAIELADLVMLDIKHIDQEKYK-VLTSVNLAPTLKMADYLESINKPVWLRYVLVPG 172
Query: 177 DGPFLEENTNLAISYCFQNPKW 198
++ + YC +
Sbjct: 173 Y-SDDPKDLDNWAKYCSKFKNV 193
>gi|323705233|ref|ZP_08116809.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535659|gb|EGB25434.1| pyruvate formate-lyase activating enzyme [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 242
Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 29/203 (14%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M + I E T+ G G R VF GC L +C +C
Sbjct: 1 MVMGKIHSIETCGTVDGPGI---RYVVFM--QGCPL-----------RCAYCHNPDTW-D 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
+ G + D++ + ++ + G LTGGEP LQ + L + L A+
Sbjct: 44 YSCGKEVSTDEIFNDVKRYIPYMKASGGGVTLTGGEPTLQPEFCEDLFKKLKASFIHTAL 103
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------- 169
+T+G ++ + + + + D+K + K + N + + +
Sbjct: 104 DTSGYVDIDKVKELVKYTDLFLLDIKHIDDEGHKKLTGVSNRKTLEFAKYISDEGKKMWI 163
Query: 170 RFSLQPMDGPFLEENTNLAISYC 192
R + P +EE LA +
Sbjct: 164 RHVIVPGITDDMEEIKKLA-DFV 185
>gi|225016811|ref|ZP_03706003.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum
DSM 5476]
gi|224950479|gb|EEG31688.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum
DSM 5476]
Length = 266
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 21/119 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G R VF GC L +C FC G G +
Sbjct: 36 VESFGAVDGPGI---RFVVF--LQGCPL-----------RCLFCHNPDTW-DGKAGREVS 78
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIE 123
+L D I +K L+GGEPLL Q +++ + G AV+T+G I
Sbjct: 79 AQELVDEILTYRNYIKKG--GVTLSGGEPLLQAQFTAEVLRLCKENGLHTAVDTSGCIP 135
>gi|187935671|ref|YP_001886761.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum B
str. Eklund 17B]
gi|187723824|gb|ACD25045.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum B
str. Eklund 17B]
Length = 236
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC S +C++C G Y ++L
Sbjct: 15 VDGPGIRV---VVF--FQGC-----------SLRCKYCHNPDTWTY-DGGDEYTPEELVK 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
IE + +GGEPL Q + +++ ++G ++T+G
Sbjct: 58 KIERYKTYFKSSNGGVTFSGGEPLRQPEFLLEVLKLCKEKGIHTCLDTSGFGIGDYNEIL 117
Query: 131 ICVSP 135
CV
Sbjct: 118 KCVDL 122
>gi|239828671|ref|YP_002951295.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70]
gi|239808964|gb|ACS26029.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. WCH70]
Length = 249
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 26/188 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R +F GC +C++C G G V
Sbjct: 9 ETCGTVDGPGL---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEMTV 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+++ D ++ G ++GGEPLLQ+D + L +A K G A++++G
Sbjct: 52 EEIIDDVKTYLPFINASGGGITVSGGEPLLQIDFLIELFKACKKLGIHTAIDSSGGCYTA 111
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+ S + + + + L ++ + + LQ E+N
Sbjct: 112 EA------SFQQKLNELLSYTDLILLDLKHIDEKKHRKLTGKTNQHILQ-FARFLSEKNV 164
Query: 186 NLAISYCF 193
+ I +
Sbjct: 165 PVWIRHVL 172
>gi|317060665|ref|ZP_07925150.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
gi|313686341|gb|EFS23176.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
Length = 242
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 54/177 (30%), Gaps = 47/177 (26%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M I E F T G G F GC L +CR+C
Sbjct: 1 MMKAYINSFESFGTKDGPGIR------FVLFLQGCPL-----------RCRYCHNVDTWN 43
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
Y +++ + ++GGEPLLQ D Q +K G A
Sbjct: 44 LQHPNYIYTAEEILQEVNR---VRAFLTGGVTVSGGEPLLQADFVKEFFQLCHKNGIHTA 100
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
++T+G I ++ K V + ++ + D E++
Sbjct: 101 LDTSGYI----------------------FTEKSKEVLEETDLVLLDIKHIDPEKYY 135
>gi|260589643|ref|ZP_05855556.1| pyruvate formate-lyase 1-activating enzyme [Blautia hansenii DSM
20583]
gi|331083074|ref|ZP_08332191.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 6_1_63FAA]
gi|260539883|gb|EEX20452.1| pyruvate formate-lyase 1-activating enzyme [Blautia hansenii DSM
20583]
gi|330405076|gb|EGG84613.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 250
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R+ VF GC +C +C KG V
Sbjct: 13 ETFGTVDGPGI---RLVVF--LQGCP-----------MRCLYCHNPDTW-APKKGQSMTV 55
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
+++ ++ E+ G + +TGGEPL+Q++ L QA + ++T+G
Sbjct: 56 EEILEIYEKNK--GFYQNGGITVTGGEPLMQLEFVTALFQAAKSKNIHTCLDTSG 108
>gi|52080502|ref|YP_079293.1| putative pyruvate formate-lyase-activating enzyme [Bacillus
licheniformis ATCC 14580]
gi|52785882|ref|YP_091711.1| hypothetical protein BLi02131 [Bacillus licheniformis ATCC 14580]
gi|319645536|ref|ZP_07999768.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2]
gi|52003713|gb|AAU23655.1| putative Pyruvate formate-lyase-activating enzyme [Bacillus
licheniformis ATCC 14580]
gi|52348384|gb|AAU41018.1| putative protein [Bacillus licheniformis ATCC 14580]
gi|317392422|gb|EFV73217.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2]
Length = 252
Score = 66.1 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R VF GC +C+FC GT G + V
Sbjct: 9 ETFGTVDGPGI---RYVVF--TQGC-----------LMRCQFCHNADTWEIGT-GKQMTV 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
++ ++ + G ++GGEPLLQ+ + L +A G A++++G
Sbjct: 52 SEIVQDVQHYLPFIQSSGGGITVSGGEPLLQLPFLIELFKACKSLGIHTALDSSGGC 108
>gi|225386322|ref|ZP_03756086.1| hypothetical protein CLOSTASPAR_00065 [Clostridium asparagiforme
DSM 15981]
gi|225047601|gb|EEG57847.1| hypothetical protein CLOSTASPAR_00065 [Clostridium asparagiforme
DSM 15981]
Length = 249
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 33/173 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G +F SGC +C +C G V
Sbjct: 9 ESFGTVDGPGIRM---VIF--LSGCP-----------MRCLYCHNPDTW-DPKGGTPMTV 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+QL + + ++GGEPL + L +A KRG ++T+G
Sbjct: 52 EQLLNQYDNARHF--YRKGGITVSGGEPLTQIGFVTELFEAAKKRGIHTCLDTSG----- 104
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
V+ + + L V V + ++ + + QP D
Sbjct: 105 -------VTFRPDSAGVREKFDRLAAVTDLVLLDIKHIDPQEHLKLCGQPQDN 150
>gi|262382718|ref|ZP_06075855.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
2_1_33B]
gi|262295596|gb|EEY83527.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
2_1_33B]
Length = 244
Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 25/135 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG- 56
M I E F T+ G G F F GC L C +C
Sbjct: 1 MIKGKIHSLESFGTVDGPGIR------FVVFMQGCPLR-----------CLYCHNPDTWN 43
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
+G + +L + + +TGGEPLLQ + ++G
Sbjct: 44 PKGKVKYQMTPGELLTEVLRYKSFIARG--GVTVTGGEPLLQPEFLKEFFRLCQEQGLHT 101
Query: 115 AVETNGTIEPPQGID 129
A++T+G + + +
Sbjct: 102 ALDTSGFVCTSKAWE 116
>gi|257463063|ref|ZP_05627465.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
Length = 241
Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 48/177 (27%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
MK Y I E F T G G F GC L +CR+C
Sbjct: 1 MKAY-INSFESFGTKDGPGIR------FVLFLQGCPL-----------RCRYCHNVDTWN 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
Y +++ + ++GGEPLLQ D Q +K G A
Sbjct: 43 LQHPNYIYTAEEILQEVNR---VRAFLTGGVTVSGGEPLLQADFVKEFFQLCHKNGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
++T+G I ++ K V + ++ + D E++
Sbjct: 100 LDTSGYI----------------------FTEKSKEVLEETDLVLLDIKHIDPEKYY 134
>gi|213585771|ref|ZP_03367597.1| hypothetical protein SentesTyph_32677 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 58
Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I C WRLS+QTHK++ I
Sbjct: 3 IEALDELLATLSDDKPRVIALQPISQK--EDATRLCIETCIAR-NWRLSMQTHKYLNI 57
>gi|150009974|ref|YP_001304717.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
distasonis ATCC 8503]
gi|255012762|ref|ZP_05284888.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7]
gi|256838769|ref|ZP_05544279.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
D13]
gi|298374331|ref|ZP_06984289.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19]
gi|301307860|ref|ZP_07213816.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3]
gi|149938398|gb|ABR45095.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
distasonis ATCC 8503]
gi|256739688|gb|EEU53012.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
D13]
gi|298268699|gb|EFI10354.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19]
gi|300834203|gb|EFK64817.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3]
Length = 244
Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 25/135 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG- 56
M I E F T+ G G F F GC L C +C
Sbjct: 1 MIKGKIHSLESFGTVDGPGIR------FVVFMQGCPLR-----------CLYCHNPDTWN 43
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEI 114
+G + +L + + +TGGEPLLQ + ++G
Sbjct: 44 PKGKVKYQMTPGELLTEVLRYKSFIARG--GVTVTGGEPLLQPEFLKEFFRLCQEQGLHT 101
Query: 115 AVETNGTIEPPQGID 129
A++T+G + + +
Sbjct: 102 ALDTSGFVCTSKAWE 116
>gi|307690701|ref|ZP_07633147.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
743B]
Length = 229
Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 64/197 (32%), Gaps = 34/197 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
L G G R VF GCNL +C +C G Y +QL
Sbjct: 4 LDGPGI---RNIVF--LQGCNL-----------RCLYCHNPDTW-ACNGGTEYTPEQLLK 46
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG-----TIEPP 125
I EK G +GGEPLLQ + ++ + G A++T G E
Sbjct: 47 KIVRFKPYFEKSGGGVTFSGGEPLLQYNFLIEALKLCKENGIHTAIDTAGVGMGNYEEVL 106
Query: 126 QGIDWICVSPKAGCDLKIKG-----GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
+ D + + K ++K K E K + S R + P
Sbjct: 107 KYTDLVLLDIKHYDEIKYKEITGRDNSEFKKFLEALKNSNSKVWI----RHVVVPGINDT 162
Query: 181 LEENTNLAISYCFQNPK 197
E+ L Y P+
Sbjct: 163 KEDVLALC-EYIKDIPR 178
>gi|257470672|ref|ZP_05634762.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
ATCC 49185]
gi|317064878|ref|ZP_07929363.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
ATCC 49185]
gi|313690554|gb|EFS27389.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
ATCC 49185]
Length = 243
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 24/172 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F GC L +C+FC + +
Sbjct: 11 ESFGTVDGPGIR------FVLFLQGCPL-----------RCKFCHNPDTWNMSEEKIKEE 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+ + + + K+G +TGGEPLLQ D + L + + G V+T+G I
Sbjct: 54 ATETFEKVRKYKGYFGKKG-GLTVTGGEPLLQADFVLELFKLCKEDGINTVVDTSGYIFN 112
Query: 125 PQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ + + + D+K K +EL V + + Y+ ++ +
Sbjct: 113 EKVKEVLEYTDLVLLDIKAIDEKVYKELTGVELENTLKFAQYLKEKGKKVWI 164
>gi|119774634|ref|YP_927374.1| pyruvate formate lyase-activating enzyme 1 [Shewanella amazonensis
SB2B]
gi|119767134|gb|ABL99704.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
amazonensis SB2B]
Length = 246
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLDGGKEM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + G +GGE +LQ + L +A G ++TNG +
Sbjct: 52 QVDELMSQILSYRPFLDASGGGVTASGGEAILQAEFVADLFKACRAEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKL 151
+ + L IK + K
Sbjct: 112 KYTPAIDVLLDNTDLVLLDIKHIDDAKH 139
>gi|188589411|ref|YP_001921719.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
E3 str. Alaska E43]
gi|188499692|gb|ACD52828.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
E3 str. Alaska E43]
Length = 236
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC S +C++C G Y + L
Sbjct: 15 VDGPGIRV---VVF--FQGC-----------SLRCKYCHNPDTWTY-DGGEEYTPEDLVK 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE E +GGEPL Q + +++ +RG ++T+G
Sbjct: 58 KIERYKTYFESSNGGVTFSGGEPLRQPEFLLEVLKLCKERGINTCLDTSGF 108
>gi|255654806|ref|ZP_05400215.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
QCD-23m63]
gi|296449550|ref|ZP_06891327.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP08]
gi|296878127|ref|ZP_06902142.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP07]
gi|296261614|gb|EFH08432.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP08]
gi|296430880|gb|EFH16712.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP07]
Length = 244
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 29/156 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDF 54
M I E F T+ G G R F GC L +C++C
Sbjct: 1 MIKGKIHSIETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRD 40
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
G Y VD++ + + +GGE LQ L + +
Sbjct: 41 TW-DIKSGKEYTVDEIITDALKYTSFMKFSDGGITASGGESTLQPEFLSELFKKAKENDI 99
Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
++T+G ++ + + DLK ++
Sbjct: 100 HTCLDTSGFVDIETIDPVLDNTDLVLLDLKHMVEEK 135
>gi|205356588|ref|ZP_03223351.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205345593|gb|EDZ32233.1| hypothetical protein Cj8421_0161 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 224
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 36/205 (17%)
Query: 27 CRFSGCNLWSGR---EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
RF+GCN + + CDT Y +L++ +
Sbjct: 1 MRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQD 60
Query: 84 EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIEPPQGI------DWICV 133
V+TGGEPL+ + P IQ L K FEI E+NG+IE +
Sbjct: 61 FDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFAL 120
Query: 134 SPK-AGCDLKIKGGQELKLVFPQVNVSPENYIGF--------------------DFERFS 172
S K +K K + N + +++ F +
Sbjct: 121 SVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIF 180
Query: 173 LQPM--DGPFLEENTNLAISYCFQN 195
PM + L++N +C +N
Sbjct: 181 CMPMGENEQNLKKNAQKIAEFCIKN 205
>gi|293375734|ref|ZP_06622006.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sanguinis
PC909]
gi|292645677|gb|EFF63715.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sanguinis
PC909]
Length = 253
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/203 (19%), Positives = 66/203 (32%), Gaps = 35/203 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C +C + +G
Sbjct: 18 VESFGTVDGPGLR------FIVFVQGC-----------GLRCAYCHNPDSW-KMKEGKVT 59
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
V ++ D + + E G ++GGEPLLQ+ L + K G ++T+G +
Sbjct: 60 EVSEIVDELIKYKEFFEASGGGITVSGGEPLLQMPFVTELFKECKKHGIHTNIDTSGDLH 119
Query: 124 PPQGID------WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------R 170
+ V+ D+K+ + K + + N + + R
Sbjct: 120 FNTEERKAQLKELLSVTDMLMLDIKMFDAHKHKQLTGKDNAHILEFGRLVSDAGIPMWIR 179
Query: 171 FSLQPMDGPFLEENTNLAISYCF 193
L P EE+ Y
Sbjct: 180 RVLVPG-LTDDEEDLKQTAEYIK 201
>gi|113969835|ref|YP_733628.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-4]
gi|113884519|gb|ABI38571.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-4]
Length = 246
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 57/189 (30%), Gaps = 32/189 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLDGGKEV 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + +GGE +LQ + L +A K G ++TNG +
Sbjct: 52 QVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
D + + L Q+N + +LQ + +
Sbjct: 112 KYT----------PVIDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAEY-LAKR 160
Query: 184 NTNLAISYC 192
N I Y
Sbjct: 161 NQPTWIRYV 169
>gi|251779583|ref|ZP_04822503.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243083898|gb|EES49788.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 236
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC S +C++C G Y + L
Sbjct: 15 VDGPGIRV---VVF--FQGC-----------SLRCKYCHNPDTWTY-DGGEEYTPEDLVK 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE E +GGEPL Q + +++ +RG ++T+G
Sbjct: 58 KIERYKTYFESSNGGVTFSGGEPLRQPEFLLEVLKLCKERGINTCLDTSGF 108
>gi|325838715|ref|ZP_08166630.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sp. HGF1]
gi|325490765|gb|EGC93072.1| pyruvate formate-lyase 1-activating enzyme [Turicibacter sp. HGF1]
Length = 243
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/203 (19%), Positives = 66/203 (32%), Gaps = 35/203 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C +C + +G
Sbjct: 8 VESFGTVDGPGLR------FIVFVQGC-----------GLRCAYCHNPDSW-KMKEGKVT 49
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
V ++ D + + E G ++GGEPLLQ+ L + K G ++T+G +
Sbjct: 50 EVSEIVDELIKYKEFFEASGGGITVSGGEPLLQMPFVTELFKECKKHGIHTNIDTSGDLH 109
Query: 124 PPQGID------WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------R 170
+ V+ D+K+ + K + + N + + R
Sbjct: 110 FNTEERKAQLKELLSVTDMLMLDIKMFDAHKHKQLTGKDNAHILEFGRLVSDAGIPMWIR 169
Query: 171 FSLQPMDGPFLEENTNLAISYCF 193
L P EE+ Y
Sbjct: 170 RVLVPG-LTDDEEDLKQTAEYIK 191
>gi|268610302|ref|ZP_06144029.1| pyruvate formate-lyase activating enzyme [Ruminococcus flavefaciens
FD-1]
Length = 247
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 23/132 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R VF F GC L +CR+C + G+
Sbjct: 9 ESFGTVDGPGV---RFVVF--FQGCPL-----------RCRYCHNP----DTWEFGKGTE 48
Query: 68 DQLADLIEEQWITGEK-EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
DL++E E + TGGEPL Q L +G ++T+ +
Sbjct: 49 RTAEDLMKEYDSYKEFLKSGGITATGGEPLAQPEFLAELFSLAKSKGVHTCLDTSAGVYS 108
Query: 125 PQGIDWICVSPK 136
P+ + I + K
Sbjct: 109 PEHHEAIDKALK 120
>gi|114047065|ref|YP_737615.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-7]
gi|113888507|gb|ABI42558.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-7]
Length = 246
Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 57/189 (30%), Gaps = 32/189 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLDGGKEV 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + +GGE +LQ + L +A K G ++TNG +
Sbjct: 52 QVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
D + + L Q+N + +LQ + +
Sbjct: 112 KYT----------PVIDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAEY-LAKR 160
Query: 184 NTNLAISYC 192
N I Y
Sbjct: 161 NQPTWIRYV 169
>gi|117920002|ref|YP_869194.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. ANA-3]
gi|117612334|gb|ABK47788.1| pyruvate formate-lyase activating enzyme [Shewanella sp. ANA-3]
Length = 246
Score = 65.3 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 57/189 (30%), Gaps = 32/189 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLDGGKEV 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + +GGE +LQ + L +A K G ++TNG +
Sbjct: 52 QVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
D + + L Q+N + +LQ + +
Sbjct: 112 KYT----------PVIDELLDNTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAEY-LAKR 160
Query: 184 NTNLAISYC 192
N I Y
Sbjct: 161 NQPTWIRYV 169
>gi|154493910|ref|ZP_02033230.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC
43184]
gi|154086170|gb|EDN85215.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC
43184]
Length = 240
Score = 65.3 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 23/120 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F T+ G G F F GC L +C +C ++
Sbjct: 9 ESFGTVDGPGIR------FVVFMQGCPL-----------RCLYCHNPDTWEVKRETPYLL 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+ L + K +TGGEPLLQ + + G A++T+G I
Sbjct: 52 EPEALLAEVLRYKNFIAKG--GVTVTGGEPLLQPEFLKEFFRLCRENGIHTALDTSGYIC 109
>gi|24374440|ref|NP_718483.1| pyruvate formate lyase-activating enzyme 1 [Shewanella oneidensis
MR-1]
gi|24349016|gb|AAN55927.1|AE015730_4 pyruvate formate-lyase 1 activating enzyme [Shewanella oneidensis
MR-1]
Length = 246
Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 57/189 (30%), Gaps = 32/189 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FIAFMQGC-----------LMRCQYCHNRDTW-DLDGGKEV 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + +GGE +LQ + L +A K G ++TNG +
Sbjct: 52 QVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKKEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
D + + L Q+N + +LQ + +
Sbjct: 112 KYT----------PVIDELLDHTDLVLLDIKQMNDDKHIELTKVSNHRTLQFAEY-LAKR 160
Query: 184 NTNLAISYC 192
N I Y
Sbjct: 161 NQPTWIRYV 169
>gi|284051128|ref|ZP_06381338.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis
str. Paraca]
Length = 249
Score = 64.9 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 26/190 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF GC L +C +C + G + V
Sbjct: 16 ESCGTVDGPGI---RFVVF--TQGCPL-----------RCLYCHNPDC-QEVAGGKQVTV 58
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+++ + + +TGGEPL+Q + + + + G A++T+G I
Sbjct: 59 EEIIQEVVKYRSYMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPIN 118
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDG 178
+ + D+K + + V N+ + E RF L P
Sbjct: 119 VAKPVLDYTDLVLLDIKSYHSETYRKVTCVSVEPTLNFAKYLHEINKPTWVRFVLVPNLT 178
Query: 179 PFLEENTNLA 188
+ LA
Sbjct: 179 NDINNMEALA 188
>gi|150391318|ref|YP_001321367.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
QYMF]
gi|149951180|gb|ABR49708.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
Length = 242
Score = 64.9 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 21/173 (12%)
Query: 3 LYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ EI F + G G ++F GCNL + + + C + T
Sbjct: 7 TLPVNEIIPFSNVDGRGNRT---SIFV--QGCNLNCVYCHNPETIKLP-C-------EET 53
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
+ Y + +L +I++ R ++GGE L L + K G ++T
Sbjct: 54 QETNYTIKELLSIIKKYGPY----IRGITVSGGEATLYSTYLTQLFGEVKKLGLTCYIDT 109
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
NG + I ++ K D+K E QVN +
Sbjct: 110 NGLFNLEKMEALIPITDKFLFDIKGINNLEKVTRKKQVNSFDNLEYLLKLNKV 162
>gi|254974377|ref|ZP_05270849.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
QCD-66c26]
gi|255091770|ref|ZP_05321248.1| pyruvate formate-lyase activating enzyme [Clostridium difficile CIP
107932]
gi|255099873|ref|ZP_05328850.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
QCD-63q42]
gi|255305762|ref|ZP_05349934.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
ATCC 43255]
gi|255313501|ref|ZP_05355084.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
QCD-76w55]
gi|255516189|ref|ZP_05383865.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
QCD-97b34]
gi|255649285|ref|ZP_05396187.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
QCD-37x79]
gi|260682455|ref|YP_003213740.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
CD196]
gi|260686054|ref|YP_003217187.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
R20291]
gi|306519384|ref|ZP_07405731.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
QCD-32g58]
gi|260208618|emb|CBA61346.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
CD196]
gi|260212070|emb|CBE02658.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
R20291]
Length = 244
Score = 64.9 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 29/156 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDF 54
M I E F T+ G G R F GC L +C++C
Sbjct: 1 MIKGKIHSIETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRD 40
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
G Y VD++ + + G +GGE LQ L + +
Sbjct: 41 TW-DIKSGKEYTVDEIITDALKYTSFMKFSGGGITASGGESTLQPEFLSELFKKAKENDI 99
Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
++T+G ++ + + DLK ++
Sbjct: 100 HTCLDTSGFVDIETIDPVLDNTDLVLLDLKHMVEEK 135
>gi|291565978|dbj|BAI88250.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis
NIES-39]
Length = 255
Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 26/190 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF GC L +C +C + G + V
Sbjct: 22 ESCGTVDGPGI---RFVVF--TQGCPL-----------RCLYCHNPDC-QEVAGGKQVTV 64
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+++ + + +TGGEPL+Q + + + + G A++T+G I
Sbjct: 65 EEIIQEVVKYRSYMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPIN 124
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDG 178
+ + D+K + + V N+ + E RF L P
Sbjct: 125 VAKPVLDYTDLVLLDIKSYHSETYRKVTCVSVEPTLNFAKYLHEINKPTWVRFVLVPNLT 184
Query: 179 PFLEENTNLA 188
+ LA
Sbjct: 185 NDINNMEALA 194
>gi|114566578|ref|YP_753732.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337513|gb|ABI68361.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 246
Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 19/114 (16%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYNV 67
F TL G G VF GC+L +C++C + Y+
Sbjct: 10 TFSTLDGPGIRT---VVFM--QGCHL-----------RCKYCHNPDTWELKSLSAQEYSP 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
++L ++I G +GGEPLL D + + A++T+
Sbjct: 54 EELMEVIRRSKPYFIASGGGLTFSGGEPLLHDDFIKAVFLLCREENISTAIDTS 107
>gi|218258025|ref|ZP_03474467.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii
DSM 18315]
gi|218225824|gb|EEC98474.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii
DSM 18315]
Length = 240
Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 23/120 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F T+ G G F F GC L +C +C ++ +
Sbjct: 9 ESFGTVDGPGIR------FVVFMQGCPL-----------RCLYCHNPDTWEVKRETPYQL 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
L + K +TGGEPLLQ + + G A++T+G I
Sbjct: 52 EPKALLAEVLRYKNFIAKG--GVTVTGGEPLLQPEFLKEFFRLCRENGIHTALDTSGYIC 109
>gi|126698338|ref|YP_001087235.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
630]
gi|115249775|emb|CAJ67592.1| Pyruvate formate-lyase activating enzyme [Clostridium difficile]
Length = 244
Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 29/156 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDF 54
M I E F T+ G G R F GC L +C++C
Sbjct: 1 MIKGKIHSIETFGTVDGPG---------IRYILFFQGCPL-----------RCKYCHNRD 40
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
G Y VD++ + + G +GGE LQ L + +
Sbjct: 41 TW-DIKSGKEYTVDEIITDALKYTSFMKFSGGGITASGGESTLQPEFLSELFKKAKENDI 99
Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
++T+G ++ + + DLK ++
Sbjct: 100 HTCLDTSGFVDIETIDPVLDNTDLVLLDLKHMVEEK 135
>gi|164687599|ref|ZP_02211627.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM
16795]
gi|164603373|gb|EDQ96838.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM
16795]
Length = 248
Score = 64.5 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 19/165 (11%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R +F F GC L +C++C + G Y V
Sbjct: 10 ETFGTVDGPGI---RYIIF--FQGCPL-----------RCKYCHNRDTW-KTNCGKEYTV 52
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D+LA I + + G +GGE LQ + L + G ++T G ++
Sbjct: 53 DELAQDIMKYQTYMQFSGGGVTASGGEATLQAEFVTELFAKCKELGIHTCLDTAGFVDIE 112
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ + + D+K ++ K + N ER
Sbjct: 113 KVDKLLDYTDLVLLDIKHIDNEKCKQLTGVGNEKALKLAKHLDER 157
>gi|158321707|ref|YP_001514214.1| glycyl-radical activating family protein [Alkaliphilus oremlandii
OhILAs]
gi|158141906|gb|ABW20218.1| glycyl-radical enzyme activating protein family [Alkaliphilus
oremlandii OhILAs]
Length = 248
Score = 64.5 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 25/191 (13%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
GEG +F GC L +C +C + R V ++ DL
Sbjct: 22 DGEGIRT---TIF--LGGCPL-----------RCSWCHNPESWNENPIH-RVTVKEVMDL 64
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
IE I G +GGEP Q L++ G + A+ET+G + +
Sbjct: 65 IERDAIFYRTSGGGITFSGGEPTRQGEFLKTLVKNAMFLGIDTAIETSGYFNWEEQKETF 124
Query: 132 CVSPKAGCDLKIKGG-QELKLVFPQVNVSPENYIGF----DFERFSLQPMDGPFLE-ENT 185
+ D+K K ++ EN + + + + +N
Sbjct: 125 EMLDSVFVDIKHMDPAVHRKFTGIDNSLILENIMKISDLGKRPVIRIPLISDVNDDGDNI 184
Query: 186 NLAISYCFQNP 196
+ +
Sbjct: 185 EKTGEFILNHL 195
>gi|289450755|ref|YP_003475206.1| pyruvate formate-lyase 1-activating enzyme [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289185302|gb|ADC91727.1| pyruvate formate-lyase 1-activating enzyme [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 503
Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 53/180 (29%), Gaps = 27/180 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G +F GC L +C FC T G +++ +
Sbjct: 22 GVRTIFF-LQGCPL-----------RCSFCHNPDT-QATTGGTLMTPEEVLAKAKRYRPY 68
Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW------IC 132
+E +GGEPLLQ ++ L+ GF ++T+G + I
Sbjct: 69 -HREDGGVTFSGGEPLLQGEFLAATLKLLHDNGFNTCLDTSGYGDIRYYDKIFPYVDTIL 127
Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD----FERFSLQPMDGPFLEENTNLA 188
+ KA + ++ + + + GF L P L
Sbjct: 128 LDVKAFNPTAFRKIAKVDMQIFKNFIENLWTYGFKGNIWLRHVML-PGYTDNEASMIQLI 186
>gi|325679452|ref|ZP_08159034.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus albus 8]
gi|324108851|gb|EGC03085.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus albus 8]
Length = 249
Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 22/167 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F F GC +C +C + G
Sbjct: 9 ESFSSVDGPGN---RFVIF--FQGCP-----------MRCLYCHNPDTW-EVNGGREVTA 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
++L D + + TGGEP LQ+ L + RG ++T G
Sbjct: 52 EELLDEFDSVKEFLKGG--GITCTGGEPCLQMGFLTELFEKAKARGINTCLDTCGITFRA 109
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
DL + + + V + S +N F ++
Sbjct: 110 SDTSAFD-RLMQSTDLVMLDIKHIDPVCHKKLTSHDNANILAFAQYL 155
>gi|330995626|ref|ZP_08319526.1| pyruvate formate-lyase 1-activating enzyme [Paraprevotella
xylaniphila YIT 11841]
gi|329575032|gb|EGG56585.1| pyruvate formate-lyase 1-activating enzyme [Paraprevotella
xylaniphila YIT 11841]
Length = 243
Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RY 65
E F T+ G G F GC L +C +C G +
Sbjct: 13 ESFGTVDGPGIR------FVTFLQGCPL-----------RCLYCHNPDTWDAGRPARYQM 55
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
++L + + + LTGGEPLLQ D + + G A++T+G
Sbjct: 56 APEELLAEVLKVRSFIARG--GVTLTGGEPLLQADFCREFFRLCREEGLHTALDTSG 110
>gi|291541970|emb|CBL15080.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus bromii
L2-63]
Length = 251
Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 39/185 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F SGC + +C+FC Y
Sbjct: 14 ETFGSVDGPGV---RFVIF--LSGC-----------AMRCQFCHNPDTWKHDENTVEYTA 57
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D+L + + +G ++GGEPLLQ+D + L + K+G ++T+
Sbjct: 58 DELLNKALAYRPYWKNKG-GITVSGGEPLLQIDFLLDLFKKAKKQGVNTCIDTSAN---- 112
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDGPFLE 182
K + K + ++ + D E+ + QP LE
Sbjct: 113 ------------PFTTKEPFYSKWKELMEYTDLLLLDIKHIDNEQHKILTGQPNTN-ILE 159
Query: 183 ENTNL 187
L
Sbjct: 160 MARQL 164
>gi|290969108|ref|ZP_06560638.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
type_1 str. 28L]
gi|290780868|gb|EFD93466.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
type_1 str. 28L]
Length = 249
Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/209 (21%), Positives = 67/209 (32%), Gaps = 40/209 (19%)
Query: 1 MKLYS--I--KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFV 55
M Y I E F + G G F F GC +CR+C
Sbjct: 2 MNTYPGKIYATESFGAVDGPGVR------FIVFLQGC-----------RMRCRYCHNPET 44
Query: 56 GIQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRG 111
+G Y + +D++ E G ++GGEPLLQ D L +RG
Sbjct: 45 WQEGK-YSSYTLQYASDILREALRYRTYWKNGGGITVSGGEPLLQPDFVRELFTLAKERG 103
Query: 112 FEIAVETNGT-----IEPPQGIDWIC-VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
++T G +C V+ DLK Q+ + + Q N + +
Sbjct: 104 IHTVLDTAGNPFTTAEPFFSKFKKVCEVTDLFMLDLKEMNEQKHQKLTGQTNKNIHDMAR 163
Query: 166 FDFER-------FSLQPMDGPFLEENTNL 187
+ + L P E T L
Sbjct: 164 YLSKHGHAMWIRHVLVPGWTDTKENLTAL 192
>gi|281358833|ref|ZP_06245305.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC
BAA-548]
gi|281314701|gb|EFA98742.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC
BAA-548]
Length = 237
Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F TL G G R VF GC L +CR+C G G +
Sbjct: 12 ESFGTLDGPGV---RFVVF--LQGCPL-----------RCRYCHNPDTWELG-GGMEISS 54
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
++ IE L+GGEPL+Q + +++ + GF A++T G++
Sbjct: 55 AEVVGKIESCRNFIRSG--GVTLSGGEPLMQPEFARDILERCARAGFHTALDTAGSVPLE 112
Query: 126 QGIDWI 131
+ I
Sbjct: 113 RSRPVI 118
>gi|218778532|ref|YP_002429850.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
gi|218759916|gb|ACL02382.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
Length = 236
Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G + V + CNL +C +C+ + + + ++L D + +
Sbjct: 17 GHWSDAPCVNVYLAFCNL-----------RCPWCNAAELVVGPQTKETISPEELFDEL-Q 64
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDW 130
E + TGGEP + +P L++ + G E VETNGT
Sbjct: 65 TIKNKHPELKAVCFTGGEPTMHRGLPDLLRRVCDMGLETCVETNGTQPHLLDYVI 119
>gi|240144448|ref|ZP_04743049.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
L1-82]
gi|257203558|gb|EEV01843.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
L1-82]
gi|291535660|emb|CBL08772.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
M50/1]
gi|291540927|emb|CBL14038.1| pyruvate formate-lyase 1-activating enzyme [Roseburia intestinalis
XB6B4]
Length = 249
Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 23/118 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C + T G +
Sbjct: 8 ESFGTVDGPGVR------FVVFFEGCP-----------MRCQYCHNPDTWV-LTDGKQME 49
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
D++ D TGGEP+LQ+D L G ++T+G +
Sbjct: 50 ADEIIDRFLRN--ASFYRTGGITATGGEPMLQIDFLTELFAKAKAHGIHTCLDTSGIM 105
>gi|91793759|ref|YP_563410.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
denitrificans OS217]
gi|91715761|gb|ABE55687.1| Pyruvate formate-lyase activating [Shewanella denitrificans OS217]
Length = 245
Score = 63.8 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 23/126 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M L I E F T+ G G F F GC +C++C
Sbjct: 1 MTLGRIHSTESFGTVDGPGIR------FIAFMQGC-----------LMRCQYCHNRDSW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
G R +V +L I + + +GGE +LQ + L +A
Sbjct: 43 DLDGGTRVSVAELMAKIIDYKPFLDASNGGVTASGGEAILQAEFVAELFKACKDNHIHTC 102
Query: 116 VETNGT 121
++TNG
Sbjct: 103 LDTNGF 108
>gi|157961496|ref|YP_001501530.1| pyruvate formate lyase-activating enzyme 1 [Shewanella pealeana
ATCC 700345]
gi|157846496|gb|ABV86995.1| pyruvate formate-lyase activating enzyme [Shewanella pealeana ATCC
700345]
Length = 246
Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 57/188 (30%), Gaps = 32/188 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C +C G
Sbjct: 11 ESFGTVDGPGIR------FITFMQGC-----------LMRCLYCHNRDTW-DLHGGKEMK 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD L I E G +GGE ++Q D L +A K G ++TNG +
Sbjct: 53 VDDLMSQIISYRPFLEASGGGVTASGGEAIIQADFVAELFKACKKEGIHTCLDTNGFVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
I D + + L Q++ + + + +LQ +
Sbjct: 113 HTPI----------IDELLDNTDLVMLDIKQIDDAKHIDLTNVSNQRTLQ-FAEHLHKRG 161
Query: 185 TNLAISYC 192
I Y
Sbjct: 162 QKAWIRYV 169
>gi|114563644|ref|YP_751157.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
frigidimarina NCIMB 400]
gi|114334937|gb|ABI72319.1| pyruvate formate-lyase activating enzyme [Shewanella frigidimarina
NCIMB 400]
Length = 245
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 40/200 (20%)
Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDF 54
M L I E F T+ G G R GC +C++C
Sbjct: 1 MTLGRIHSVESFGTVDGPG---------IRYIAFMQGC-----------LMRCQYCHNRD 40
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGF 112
G +VD++ + E G +GGE +LQ L +A +G
Sbjct: 41 TW-DLDGGKEVSVDEIMSQVISYQPFLEASGGGITASGGEAILQAQFVSELFKACKSQGV 99
Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
++TNG + + D + + L Q++ + + +
Sbjct: 100 HTCLDTNGFVRKYE----------PVIDELLDNTDLVLLDIKQMDDAKHIELTKVSNHRT 149
Query: 173 LQPMDGPFLEENTNLAISYC 192
LQ N I Y
Sbjct: 150 LQ-FAQYLATRNIKTWIRYV 168
>gi|57168667|ref|ZP_00367799.1| radical SAM domain protein, putative [Campylobacter coli RM2228]
gi|57019948|gb|EAL56628.1| radical SAM domain protein, putative [Campylobacter coli RM2228]
Length = 224
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 12/180 (6%)
Query: 27 CRFSGCNLWS---GREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
RF+GCN G + + + CDT Y + ++L + +
Sbjct: 1 MRFAGCNFNCSGFGVKLIKNGKTLKGCDTIRAVFTKEFNEEYEILNASELFKRVLDLKKD 60
Query: 84 EGRYCVLTGGEPLLQVDVP----LIQALNKRGFEIAVETNGTIE--PPQGIDWICVSPKA 137
V+TGGEPL+ + P IQAL K FE+ E+NG+IE + +
Sbjct: 61 FNPIVVITGGEPLIHHENPEFIDFIQALLKNNFEVHFESNGSIELDFEKYPFYKECVFAL 120
Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
L+ G + K + ++Y F +F L + LE + + + P
Sbjct: 121 SVKLQNSGMGKEKRLNFNALKGFKHYAKDSFYKFVL---NSSQLESLSLEILEILEKAPN 177
>gi|303242788|ref|ZP_07329256.1| pyruvate formate-lyase activating enzyme [Acetivibrio
cellulolyticus CD2]
gi|302589678|gb|EFL59458.1| pyruvate formate-lyase activating enzyme [Acetivibrio
cellulolyticus CD2]
Length = 241
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R +F GC +C +C +G Y+V
Sbjct: 11 ESFGTVDGPGI---RFVIFM--QGCPF-----------RCLYCHNPDTWSN-DRGILYSV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPP 125
D++ D I + G ++GGEPLLQ L + + G ++TNG ++
Sbjct: 54 DEVFDKIRRYIPYFKNSGGGVTVSGGEPLLQAEFITELFKKCKEEGIHTTIDTNGFVDSN 113
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKL 151
I + L IK E K
Sbjct: 114 SDIVNTLLDYTDLVLLDIKHIDEQKH 139
>gi|225568673|ref|ZP_03777698.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM
15053]
gi|225162515|gb|EEG75134.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM
15053]
Length = 226
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 29/195 (14%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R VF GC L +C +C + G ++ ++A
Sbjct: 4 VDGPGL---RYVVFM--QGCPL-----------RCAYCHNPDTW-KFEAGEEFSPQEVAG 46
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
I +TGGEPL+Q + L + L + GF A++T+G
Sbjct: 47 KIRRYRPYLTNG--GVTVTGGEPLMQPEFTAELFRILKEEGFHTALDTSGIGNLQLAERV 104
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEE 183
+ + D+K +E + ++ + R L P EE
Sbjct: 105 LAYTDLVLADVKFLTEEEYRRYCRADFREVTAFLDLTKKLGIPLWIRRVLVPGIN-DTEE 163
Query: 184 NTNLAISYCFQNPKW 198
+ + + + P
Sbjct: 164 HIKKLVDFLTKYPNV 178
>gi|209524594|ref|ZP_03273142.1| pyruvate formate-lyase activating enzyme [Arthrospira maxima
CS-328]
gi|209495052|gb|EDZ95359.1| pyruvate formate-lyase activating enzyme [Arthrospira maxima
CS-328]
Length = 249
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 26/190 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF GC L +C +C + G + +V
Sbjct: 16 ESCGTVDGPGI---RFVVF--TQGCPL-----------RCLYCHNPDC-QEVAGGQQVSV 58
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+++ + + +TGGEPL+Q + + + + G A++T+G I
Sbjct: 59 EEIIQQVVKYRSYMRFSNGGITVTGGEPLMQPEFVAEIFRRCRELGIHTALDTSGYIPLN 118
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDG 178
+ + D+K + + V N+ + E RF L P
Sbjct: 119 VAKPVLDYTDLVLLDIKSYHSETYRKVTCVSVEPTLNFAKYLHEINKPTWVRFVLVPNLT 178
Query: 179 PFLEENTNLA 188
+ LA
Sbjct: 179 NDINNMEALA 188
>gi|254302663|ref|ZP_04970021.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|148322855|gb|EDK88105.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 243
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/198 (21%), Positives = 63/198 (31%), Gaps = 39/198 (19%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ + E +GGEPL Q + L + + G A
Sbjct: 43 LKDKNYIYTPEEI---LAELNKVRAFLTGGITASGGEPLFQASFILELFKLCKENGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
++T+G I Q + + D+K K + S N+I LQ
Sbjct: 100 LDTSGYIFNDQAKKVLEYTDLVLLDIKHIDKDMYKKLTSVDLESTLNFIK------YLQ- 152
Query: 176 MDGPFLEENTNLAISYCF 193
E N + I Y
Sbjct: 153 ------EINKPVWIRYVL 164
>gi|213422189|ref|ZP_03355255.1| hypothetical protein Salmonentericaenterica_32418 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 109
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVE 117
+ K G + + L +I Q R+ V+TGGEP + +PL L K GF +E
Sbjct: 19 ESDKWGAASSEDLLAVINRQG----YTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIE 74
Query: 118 TNGTIE-PPQGIDWICVSPKAGC 139
T+GT E W+ VSPK
Sbjct: 75 TSGTHEVRCTPNTWVTVSPKVNM 97
>gi|325290498|ref|YP_004266679.1| pyruvate formate-lyase activating enzyme [Syntrophobotulus
glycolicus DSM 8271]
gi|324965899|gb|ADY56678.1| pyruvate formate-lyase activating enzyme [Syntrophobotulus
glycolicus DSM 8271]
Length = 248
Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F TL G G R VF GC L +C++C +
Sbjct: 8 VESFSTLDGPGI---RSVVF--LQGCPL-----------RCQYCHNPDTWQMNEGNLVDS 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT 121
+ +A +++ + ++GGEP + L++ + G AV+T+G
Sbjct: 52 AEVIARVLKNKNYIARNG--GVTISGGEPTAQIDFLAELLKGFKEAGLHTAVDTSGY 106
>gi|212634770|ref|YP_002311295.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
piezotolerans WP3]
gi|212556254|gb|ACJ28708.1| Pyruvate formate-lyase 1 activating enzyme [Shewanella
piezotolerans WP3]
Length = 246
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/188 (21%), Positives = 59/188 (31%), Gaps = 32/188 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C G
Sbjct: 11 ESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLHGGKEIK 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L I E G +GGE +LQ + L +A K G ++TNG +
Sbjct: 53 VDELMSQIISYRPFLEASGGGVTASGGEAVLQPEFVAELFKACKKEGIHTCLDTNGFVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
I D + + L Q+N + + +LQ + N
Sbjct: 113 YTPI----------IDELLDNTDLVLLDIKQINDEKHIDLTKVSNQRTLQ-FAEHLHKRN 161
Query: 185 TNLAISYC 192
I Y
Sbjct: 162 QKTWIRYV 169
>gi|261415451|ref|YP_003249134.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371907|gb|ACX74652.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326244|gb|ADL25445.1| pyruvate formate-lyase activating enzyme [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 258
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 44/142 (30%), Gaps = 29/142 (20%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M L I E F ++ G G R VF GC +C+FC
Sbjct: 1 MTLGRINKLETFGSVDGPGI---RFVVF--TQGCP-----------MRCKFCHNPETWDF 44
Query: 59 GTKGG--------RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALN 108
GTK + + L ++GGEPL + + +A
Sbjct: 45 GTKSANGTANGSFEISAEDLLKKALRYKPY-WGTDGGITVSGGEPLAQIDFMIEFFEAAK 103
Query: 109 KRGFEIAVETNGTIEPPQGIDW 130
G V+T G P G +
Sbjct: 104 SAGVHTCVDTCGVTFRPTGEPF 125
>gi|167624514|ref|YP_001674808.1| pyruvate formate lyase-activating enzyme 1 [Shewanella halifaxensis
HAW-EB4]
gi|167354536|gb|ABZ77149.1| pyruvate formate-lyase activating enzyme [Shewanella halifaxensis
HAW-EB4]
Length = 246
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 53/170 (31%), Gaps = 31/170 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C +C G
Sbjct: 11 ESFGTVDGPGIR------FITFMQGC-----------LMRCLYCHNRDTW-DLHGGKEMK 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD L I E G +GGE +LQ D L +A K G ++TNG +
Sbjct: 53 VDDLMSQIISYRPFLEASGGGVTASGGEAILQADFVAELFKACKKEGIHTCLDTNGFVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
I D + + L Q++ + + +LQ
Sbjct: 113 HTPI----------IDELLDNTDLVLLDIKQIDDAKHIVLTNVSNHRTLQ 152
>gi|160943776|ref|ZP_02091007.1| hypothetical protein FAEPRAM212_01274 [Faecalibacterium prausnitzii
M21/2]
gi|158444950|gb|EDP21953.1| hypothetical protein FAEPRAM212_01274 [Faecalibacterium prausnitzii
M21/2]
Length = 250
Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R VF GC L +C++C +G G +
Sbjct: 14 ESFGSVDGPGV---RFVVF--LQGCAL-----------RCKYCHNPETWAEG--GEAWTA 55
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ L + + ++GGEPL L +G A++T G P
Sbjct: 56 EALFQRVYRYR-NYWGKKGGITVSGGEPLRQLDFLTEFFTLARAKGVHTALDTAGQSFRP 114
Query: 126 QGIDWI 131
++
Sbjct: 115 NDPAYL 120
>gi|260891514|ref|ZP_05902777.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii
F0254]
gi|260858897|gb|EEX73397.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii
F0254]
Length = 254
Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T G G F GC L +C +C K
Sbjct: 21 ESFGTKDGPGIR------FVLFLQGCPL-----------RCLYCHNVDTWEIKDKKMVMT 63
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
++ I + G + ++GGEPL+Q + L + + G + A++T+G I
Sbjct: 64 AQEVMKEI--LKVKGFIKTGGVTVSGGEPLMQPEFLMELFKLCRENGIQTALDTSGYIFS 121
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ + + D+K ++ K++ + + + E
Sbjct: 122 DKAKQVLELVDMVLLDIKHINPEKYKILTSVELDNTLKFAKYLNE 166
>gi|150015896|ref|YP_001308150.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii
NCIMB 8052]
gi|149902361|gb|ABR33194.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii
NCIMB 8052]
Length = 241
Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF GC L +C++C G Y +QL +
Sbjct: 15 VDGPGIRV---VVF--LQGCAL-----------RCKYCHNPDTW-ATNGGEEYTPEQLVN 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE G +GGEPL Q + ++ +G ++T G
Sbjct: 58 KIERFKTYFASSGGGVTFSGGEPLRQPEFLLETLKLCKSKGINTCIDTAGY 108
>gi|295102257|emb|CBK99802.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
prausnitzii L2-6]
Length = 250
Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R VF GC L +C++C +G G + V
Sbjct: 14 ETFGSVDGPGV---RFVVF--LQGCAL-----------RCKYCHNPETWAEG--GEEWTV 55
Query: 68 DQLADLIEEQWITGEKEGR--YCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIE 123
D L + W G+ ++GGEPL ++ + +G A++T G
Sbjct: 56 D---KLFQRAWRYRNYWGKRGGITVSGGEPLRQMEFLTAFFELARSKGVHTALDTAGQPF 112
Query: 124 PPQGIDWI 131
P ++
Sbjct: 113 RPDDAAYL 120
>gi|237736323|ref|ZP_04566804.1| pyruvate formate-lyase activating enzyme [Fusobacterium mortiferum
ATCC 9817]
gi|229421671|gb|EEO36718.1| pyruvate formate-lyase activating enzyme [Fusobacterium mortiferum
ATCC 9817]
Length = 242
Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 19/126 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R +F GC L +C+FC G K + +
Sbjct: 10 ESMGTVDGPGL---RFVIF--LQGCPL-----------RCKFCHNPDTWKIGEKKIQESA 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+ I+ K+G +TGGEPL+Q D + L + K G A++T+G I
Sbjct: 54 EDTLKKIKRYKNYFGKKG-GVTVTGGEPLVQSDYVLELFKLCKKEGIHTALDTSGYIFNE 112
Query: 126 QGIDWI 131
+ + +
Sbjct: 113 KIREIL 118
>gi|331269973|ref|YP_004396465.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
BKT015925]
gi|329126523|gb|AEB76468.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
BKT015925]
Length = 239
Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 10 FLT---LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
F + + G G R VF F GC L +C FC G +
Sbjct: 13 FESMGLVDGPGI---RNVVF--FQGCPL-----------RCSFCHNPDTW-DFNGGYEIS 55
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ L I + G +GGEPL+Q + ++ + A++T+G
Sbjct: 56 PEDLVKKIIRFKPYFKNNG-GVTFSGGEPLMQPKFLLEALKLCKENNIHTAIDTSGY 111
>gi|257126654|ref|YP_003164768.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis
C-1013-b]
gi|257050593|gb|ACV39777.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis
C-1013-b]
Length = 254
Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T G G F GC L +C +C K
Sbjct: 21 ESFGTKDGPGIR------FVLFLQGCPL-----------RCLYCHNVDTWEIKDKKMIMT 63
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
++ I + G + ++GGEPL+Q + L + + G + A++T+G I
Sbjct: 64 ASEVMKEI--LKVRGFIKTGGVTVSGGEPLMQPEFLMELFKLCRENGIQTALDTSGYIFS 121
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ + + D+K ++ K++ + + + E
Sbjct: 122 DKAKQVLELVDMVLLDIKHINPEKYKILTSVELDNTLKFAKYLNE 166
>gi|169349840|ref|ZP_02866778.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552]
gi|169293408|gb|EDS75541.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552]
Length = 249
Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 27/129 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
E F ++ G G R GC L +C++C +
Sbjct: 13 ESFGSVDGPG---------VRYILFLHGCPL-----------RCKYCHNPDTWANSKETM 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ + + EG ++GGEPLLQ+D + L + K G ++T+G
Sbjct: 53 EMTPQEALEKALKYKTYWGNEG-GITISGGEPLLQIDFLIELFKLAKKEGVNTCIDTSGA 111
Query: 122 IEPPQGIDW 130
+ +
Sbjct: 112 NFTREEPFF 120
>gi|295104012|emb|CBL01556.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
prausnitzii SL3/3]
Length = 250
Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R VF GC L +C++C +G G +
Sbjct: 14 ESFGSVDGPGV---RFVVF--LQGCAL-----------RCKYCHNPETWAEG--GEAWTA 55
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ L + + ++GGEPL + +G A++T G P
Sbjct: 56 EALFQRVYRYR-NYWGKKGGITVSGGEPLRQMDFLTEFFTLARAKGVHTALDTAGQPFRP 114
Query: 126 QGIDWI 131
++
Sbjct: 115 DDPAYL 120
>gi|262067515|ref|ZP_06027127.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium
periodonticum ATCC 33693]
gi|291378778|gb|EFE86296.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium
periodonticum ATCC 33693]
Length = 243
Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 63/198 (31%), Gaps = 39/198 (19%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ + E +GGEPL+Q + L + + G A
Sbjct: 43 LKDKNYIYTPNEI---LAELNKVKAFLTGGITASGGEPLMQASFILELFKLCKENGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
++T+G I Q + + D+K K + N+I LQ
Sbjct: 100 LDTSGYIFNDQAKKVLEYTDLVLLDIKHIDKDMYKKLTSVDLEPTLNFIK------YLQ- 152
Query: 176 MDGPFLEENTNLAISYCF 193
E N + I Y
Sbjct: 153 ------EINKPVWIRYVL 164
>gi|154484052|ref|ZP_02026500.1| hypothetical protein EUBVEN_01761 [Eubacterium ventriosum ATCC
27560]
gi|149735094|gb|EDM50980.1| hypothetical protein EUBVEN_01761 [Eubacterium ventriosum ATCC
27560]
Length = 255
Score = 62.2 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 55/173 (31%), Gaps = 33/173 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 10 ESCGTVDGPGV---RFVVF--FKGCP-----------MRCAYCHNPDTWSM-EGGTEMTV 52
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP 125
D+L E + TGGEP+ + L +KRG ++T+G
Sbjct: 53 DELLKEYE--TKKFFYQSGGITATGGEPMVQIDFLTELFTEAHKRGIHTCLDTSG----- 105
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
V+ + + +L V V + ++ + + QP D
Sbjct: 106 -------VTFRPDDPENLMKVDKLLEVTDLVMLDIKHINPQEHLKLCKQPNDN 151
>gi|197335857|ref|YP_002156408.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
gi|197317347|gb|ACH66794.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
Length = 245
Score = 62.2 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 33/208 (15%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M + I E T+ G G F F GC +C +C
Sbjct: 1 MSVGRIHSFETCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
G V +L + + + G +GGE +LQ + +A G
Sbjct: 43 DTHDGKEVTVAELIEEAKSYRHFMKASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTC 102
Query: 116 VETNGTIEPPQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE---- 169
++TNG I + + S DLK K N ++ + +
Sbjct: 103 LDTNGYIRKHTDVIDEVLEASDLVMLDLKQMKDDIHKEFIGVSNTRVLDFARYLHKIGQK 162
Query: 170 ---RFSLQPMDGPFLEENTNLAISYCFQ 194
R+ + P EE+ +L +
Sbjct: 163 TWIRYVIVPGYT-DDEESAHLLGDFIKD 189
>gi|117619525|ref|YP_856225.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117560932|gb|ABK37880.1| pyruvate formate-lyase activating enzyme [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 272
Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C++C G
Sbjct: 35 VETCGTVDGPGIR------FIVFMQGC-----------LMRCKYCHNRDTW-DTQGGREV 76
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V +L I G +GGE +LQ + L A ++G ++TNG +
Sbjct: 77 TVPELMSDITSYRHFMNASGGGVTASGGEAMLQQNFIAELFAACKEKGIHTCLDTNGFVR 136
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ L IK + K +
Sbjct: 137 HYDEQLDKVLDNTDLVLLDIKQINDDKHI 165
>gi|118444194|ref|YP_878525.1| pyruvate formate-lyase activating enzyme [Clostridium novyi NT]
gi|118134650|gb|ABK61694.1| pyruvate formate-lyase activating enzyme [Clostridium novyi NT]
Length = 240
Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 23/118 (19%)
Query: 10 FLT---LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
F + + G G R VF GC L +C FC G +
Sbjct: 14 FESMGLVDGPGI---RNVVF--LQGCPL-----------RCSFCHNPDTW-DFNTGSKTT 56
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
++L + I + G +GGEPL+Q + ++ + A++T+G
Sbjct: 57 PEELVEKIIRFKPYFKNNG-GVTFSGGEPLMQPEFLLKALKLCKENNIHTAIDTSGYY 113
>gi|19703606|ref|NP_603168.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296328725|ref|ZP_06871240.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|19713712|gb|AAL94467.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296154162|gb|EFG94965.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 243
Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 63/198 (31%), Gaps = 39/198 (19%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ + E ++GGEPLLQ + + + + G A
Sbjct: 43 LKDKNYIYTPEEV---LAELNKVKAFLSGGITISGGEPLLQSSFVLEVFKLCKENGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
++T+G I Q + + D+K K + N+I LQ
Sbjct: 100 LDTSGYIFNEQAKKVLEYTDLVLLDIKHIDKDMYKKLTSVDLEPTLNFIK------YLQ- 152
Query: 176 MDGPFLEENTNLAISYCF 193
E N I Y
Sbjct: 153 ------EINKPTWIRYVL 164
>gi|91225254|ref|ZP_01260422.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
12G01]
gi|91189893|gb|EAS76165.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
12G01]
Length = 246
Score = 61.8 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 25/172 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEEIISEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
+ + DL + + +K Q + N DF R LQ +
Sbjct: 113 HTDVIDEVLDA---TDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160
>gi|254229008|ref|ZP_04922429.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
gi|262394749|ref|YP_003286603.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
gi|151938476|gb|EDN57313.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
gi|262338343|gb|ACY52138.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
Length = 246
Score = 61.8 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 25/172 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEEIISEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
+ + DL + + +K Q + N DF R LQ +
Sbjct: 113 HTDVIDEVLDA---TDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160
>gi|237742524|ref|ZP_04573005.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 4_1_13]
gi|256845861|ref|ZP_05551319.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
3_1_36A2]
gi|294784957|ref|ZP_06750245.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
3_1_27]
gi|229430172|gb|EEO40384.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 4_1_13]
gi|256719420|gb|EEU32975.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
3_1_36A2]
gi|294486671|gb|EFG34033.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
3_1_27]
Length = 243
Score = 61.8 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 39/198 (19%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ + E +GGEPL Q + L + + G A
Sbjct: 43 LKDKNYIYTPEEI---LAELNKVKAFLTGGITASGGEPLFQASFILELFKLCKENGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
++T+G I Q + + D+K K + N+I LQ
Sbjct: 100 LDTSGYIFNDQAKKVLEYTDLVLLDIKHIDKDMYKKLTSVDLEPTLNFIK------YLQ- 152
Query: 176 MDGPFLEENTNLAISYCF 193
E N + I Y
Sbjct: 153 ------EINKPVWIRYVL 164
>gi|34763796|ref|ZP_00144710.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886434|gb|EAA23695.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 243
Score = 61.8 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 39/198 (19%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ + E +GGEPL Q + L + + G A
Sbjct: 43 LKDKNYIYTPEEI---LAELNKVKAFLTGGITASGGEPLFQASFILELFKLCKENGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
++T+G I Q + + D+K K + N+I LQ
Sbjct: 100 LDTSGYIFNDQAKKVLEYTDLVLLDIKHIDKDMYKKLTSVDLEPTLNFIK------YLQ- 152
Query: 176 MDGPFLEENTNLAISYCF 193
E N + I Y
Sbjct: 153 ------EINKPVWIRYVL 164
>gi|299143206|ref|ZP_07036286.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517691|gb|EFI41430.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 248
Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 58/188 (30%), Gaps = 32/188 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F G G VF GC L C DT G V
Sbjct: 8 ETFAVFDGPGVRT----VFF-LQGCPLRCAF--------CHNVDTQ----NPFGGRNITV 50
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPP 125
+++ + + +GGEP L + I+A+ G + V+T+G +
Sbjct: 51 EEIVERSRKMKPYFRNGKGGVTFSGGEPTLDGKFLLDAIKAVKAEGIHVTVDTSGVGDQK 110
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+ I + D+K K + + N+SP ER NT
Sbjct: 111 YYDEIIEEADLILLDIKHYNAIGFKNI-TERNISPLKKFIEAVERH------------NT 157
Query: 186 NLAISYCF 193
+ I +
Sbjct: 158 PVWIRHVM 165
>gi|294782458|ref|ZP_06747784.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
1_1_41FAA]
gi|294481099|gb|EFG28874.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
1_1_41FAA]
Length = 243
Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 26/157 (16%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ + E +GGEPL+Q + L + + G A
Sbjct: 43 LKDKNYIYTPNEI---LAELNKVKAFLTGGITASGGEPLMQASFILELFKLCKENGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
++T+G I Q + + D+K K +
Sbjct: 100 LDTSGYIFNDQAKKVLEYTDLVLLDIKHIDKDMYKKI 136
>gi|304404568|ref|ZP_07386229.1| pyruvate formate-lyase activating enzyme [Paenibacillus
curdlanolyticus YK9]
gi|304346375|gb|EFM12208.1| pyruvate formate-lyase activating enzyme [Paenibacillus
curdlanolyticus YK9]
Length = 245
Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 25/174 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC L C+FC G +
Sbjct: 8 METFGTVDGPGIR------FVLFMQGCALQ-----------CQFCHNPDTW-DPATGRQV 49
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR-GFEIAVETNGTI 122
VD++ + IE + G +TGGEP L L +A +R G A++++G
Sbjct: 50 TVDEILNEIEPYLAYYKGSGGGITVTGGEPTLQAPFVAQLFKACKERFGLHTALDSSGFC 109
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSL 173
+P ++ + + DLK + + + Q N ++ ++ + L
Sbjct: 110 DPSHAVELMTYTDLVLLDLKQMNNAKHERLTSQPNERILAFARWLSTIHKPVWL 163
>gi|317055864|ref|YP_004104331.1| pyruvate formate-lyase activating enzyme [Ruminococcus albus 7]
gi|315448133|gb|ADU21697.1| pyruvate formate-lyase activating enzyme [Ruminococcus albus 7]
Length = 248
Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 57/188 (30%), Gaps = 30/188 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G R +F F GC +C +C Q G
Sbjct: 8 VESFSSVDGPGN---RFVIF--FQGCP-----------MRCLYCHNPDTW-QTDGGREVT 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
++L + + TGGEP LQ+ L + RG ++T+G
Sbjct: 51 AEKLLGEYDSVKEFLKGG--GITCTGGEPCLQIGFLTELFEKAKSRGINTCLDTSGITFK 108
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
K DL + + + V + +N F + E+
Sbjct: 109 KSDTSAFDRLIK-STDLVMLDIKHIDPVVHKKITGHDNGGILAFAEY--------LSEKG 159
Query: 185 TNLAISYC 192
+ I +
Sbjct: 160 IPVWIRHV 167
>gi|182417137|ref|ZP_02948510.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
5521]
gi|237667537|ref|ZP_04527521.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182378979|gb|EDT76485.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
5521]
gi|237655885|gb|EEP53441.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 236
Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC L +C+FC G Y +QL +
Sbjct: 15 VDGPGIRV---VVF--FQGCAL-----------RCKFCHNPDTWTPS-GGEEYTAEQLVN 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE+ G +GG+PL Q + +++ R ++T+G
Sbjct: 58 KIEKFKSYFAASGGGVTFSGGDPLRQPEFLLEVLKLCKSRNINTCLDTSGY 108
>gi|237740458|ref|ZP_04570939.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 2_1_31]
gi|229422475|gb|EEO37522.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 2_1_31]
Length = 243
Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 26/157 (16%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ + E +GGEPL+Q + L + + G A
Sbjct: 43 LKDKNYIYTPNEI---LAELNKVKAFLTGGITASGGEPLMQASFILELFKLCKENGIHTA 99
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
++T+G I Q + + D+K K +
Sbjct: 100 LDTSGFIFNDQAKKVLEYTDLVLLDIKHIDKDMYKKI 136
>gi|126174881|ref|YP_001051030.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS155]
gi|304411937|ref|ZP_07393548.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
gi|307303295|ref|ZP_07583050.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
gi|125998086|gb|ABN62161.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS155]
gi|304349797|gb|EFM14204.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
gi|306913655|gb|EFN44077.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
Length = 246
Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 54/189 (28%), Gaps = 32/189 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLDGGKEV 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + +GGE +LQ + L A + G ++TNG +
Sbjct: 52 LVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFTACQQEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
D + + L ++ + +LQ E
Sbjct: 112 KYT----------PVIDELLDHTDLVLLDIKHMDDEKHIELTKVSNHRTLQ-FAQYLAER 160
Query: 184 NTNLAISYC 192
N I Y
Sbjct: 161 NQATWIRYV 169
>gi|120598447|ref|YP_963021.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. W3-18-1]
gi|146293475|ref|YP_001183899.1| pyruvate formate lyase-activating enzyme 1 [Shewanella putrefaciens
CN-32]
gi|120558540|gb|ABM24467.1| pyruvate formate-lyase activating enzyme [Shewanella sp. W3-18-1]
gi|145565165|gb|ABP76100.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens
CN-32]
gi|319426779|gb|ADV54853.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens
200]
Length = 246
Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 21/149 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FIAFMQGC-----------LMRCQYCHNRDTW-DLDGGKEV 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + +GGE +LQ + L +A G ++TNG +
Sbjct: 52 QVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFKACKNEGVHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ + L IK + K +
Sbjct: 112 KYTPVIDELLDHTDLVLLDIKHMDDEKHI 140
>gi|313905270|ref|ZP_07838637.1| pyruvate formate-lyase activating enzyme [Eubacterium
cellulosolvens 6]
gi|313469881|gb|EFR65216.1| pyruvate formate-lyase activating enzyme [Eubacterium
cellulosolvens 6]
Length = 244
Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 26/167 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F R GC +CR+C T +
Sbjct: 10 ETFGSVDGPGV---RFVIFVR--GC-----------KMRCRYCHNADTWKMQTDNMK-TA 52
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D+L D E ++ ++GGEPLLQ+D + L + +RG + ++T G
Sbjct: 53 DELLDQAERYK-AYWRDDGGITVSGGEPLLQIDFLLDLFKKAKERGIKTCIDTAGQPFTR 111
Query: 126 QGIDWICVSPKAGC------DLKIKGGQELKLVFPQVNVSPENYIGF 166
+ + D+K +E K + Q N + + +
Sbjct: 112 EEPFFSKFKELMQYTDLLLVDIKHIDSEEHKKLTAQPNENIHDMFRY 158
>gi|262038411|ref|ZP_06011785.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia
goodfellowii F0264]
gi|261747506|gb|EEY34971.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia
goodfellowii F0264]
Length = 241
Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 30/201 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T G G F F GC L +C +C K
Sbjct: 9 ESFGTKDGPGIR------FVLFMQGCPL-----------RCLYCHNVDTWNVKDKKFMMT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
+++ I + G ++GGEPLLQ L + + AV+T+G +
Sbjct: 52 PEEVMKEI--LKVKGFIRTGGVTVSGGEPLLQPEFITELFKLCKENDIHTAVDTSGYMFN 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMD 177
+ + + + D+K + K + + + E R+ L P
Sbjct: 110 NKVKEVLKWTDLVLLDIKHINPNKYKKLTSVSLEHTLEFAKYLSEINKNAWIRYVLVPGY 169
Query: 178 GPFLEENTNLAISYCFQNPKW 198
EE+ + + Q
Sbjct: 170 -SDDEEDLHEWAKFVSQFKNV 189
>gi|254519817|ref|ZP_05131873.1| pyruvate formate-lyase activating enzyme [Clostridium sp.
7_2_43FAA]
gi|226913566|gb|EEH98767.1| pyruvate formate-lyase activating enzyme [Clostridium sp.
7_2_43FAA]
Length = 237
Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC L +C +C + +G Y ++L
Sbjct: 15 VDGPGIRV---VVF--FQGCKL-----------RCLYCHNPDTWSE-NEGNEYTSEELVK 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
I+ G +GG+PL Q + +++ G ++T+G
Sbjct: 58 KIKRYKSYFATSGGGVTFSGGDPLRQPEFLLEVLKECKAEGIHTCLDTSG 107
>gi|320540673|ref|ZP_08040308.1| putative conserved protein [Serratia symbiotica str. Tucson]
gi|320029264|gb|EFW11308.1| putative conserved protein [Serratia symbiotica str. Tucson]
Length = 54
Score = 61.5 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 155 QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
++ +LQP+ E+ T L I+ C WRLS+QTHK++ I
Sbjct: 1 ALDALLATLHDKKPRIIALQPISKK--EDATRLCITTCIAR-NWRLSMQTHKYLNI 53
>gi|210613376|ref|ZP_03289696.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787]
gi|210151218|gb|EEA82226.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787]
Length = 250
Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 32/188 (17%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E T+ G G R +F F GC +C +C +
Sbjct: 1 MTKGYIHSIESCGTVDGPGI---RYVIF--FQGCP-----------MRCLYCHNPDTW-E 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
KG + VD++ + +TGGEP++Q+D + L L+K G +
Sbjct: 44 PNKGTQMTVDEVLEGFYSNMPF--YHNGGVTVTGGEPMMQMDFLIELFTKLHKDGIHTCI 101
Query: 117 ETNGTIEPPQGIDWIC-------VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+++G + P ++ V+ D+K Q+ K + N + + E
Sbjct: 102 DSSGIMFQPDNETFMNKLDTLLEVTDLIMLDIKHINPQKHKELTAHSNERILAFAKYLDE 161
Query: 170 RFSLQPMD 177
+ P+
Sbjct: 162 KHI--PVW 167
>gi|2500056|sp|Q46267|PFLA_CLOPA RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme
gi|1072362|emb|CAA63749.1| pyruvate-formate-lyase-activating enzyme [Clostridium pasteurianum]
Length = 238
Score = 61.1 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 23/126 (18%)
Query: 1 MKLYSIKEIFLT---LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M + I I + + G G VF F GC +C +C
Sbjct: 1 MVMGRIHSI-ESMGLVDGPGIRT---VVF--FQGC-----------GLRCSYCHNPDTWN 43
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
G ++L + ++ G +GGE LLQ + +++ ++G A
Sbjct: 44 MA-GGKELTAEELLKKLLRFKPYFDRSGGGVTFSGGEVLLQPEFLIDILKLCKEQGIHTA 102
Query: 116 VETNGT 121
++T G
Sbjct: 103 IDTAGY 108
>gi|119946914|ref|YP_944594.1| pyruvate formate lyase-activating enzyme 1 [Psychromonas ingrahamii
37]
gi|119865518|gb|ABM04995.1| pyruvate formate-lyase activating enzyme [Psychromonas ingrahamii
37]
Length = 246
Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 21/149 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F GC +C++C G
Sbjct: 10 VESCGTVDGPGIR------FIIFLQGC-----------LMRCQYCHNRDTW-DTEAGKEM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+V++L + + E G ++GGE +LQ + +A + G ++TNG +
Sbjct: 52 SVEELMAELLQYRHYMEASGGGITVSGGEAMLQPEFIKAIFEACHLEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ L IK K +
Sbjct: 112 RIDDTVKSVLDHTDLVLLDIKQMDNDKHI 140
>gi|59712198|ref|YP_204974.1| pyruvate formate lyase-activating enzyme 1 [Vibrio fischeri ES114]
gi|59480299|gb|AAW86086.1| pyruvate formate lyase activating enzyme 1 [Vibrio fischeri ES114]
Length = 245
Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 25/176 (14%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M + I E T+ G G F F GC +C +C
Sbjct: 1 MSVGRIHSFETCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
G V +L + + + G +GGE +LQ + +A G
Sbjct: 43 DTHDGKEVTVAELIEEAKSYRHFMKASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTC 102
Query: 116 VETNGTIEPPQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
++TNG I + + S DLK K N ++ + +
Sbjct: 103 LDTNGYIRKHTDVIDEVLEASDLVMLDLKQMKDDVHKEFIGVSNTRVLDFARYLHK 158
>gi|28897766|ref|NP_797371.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
RIMD 2210633]
gi|153837337|ref|ZP_01990004.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ3810]
gi|260363808|ref|ZP_05776563.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
K5030]
gi|260876932|ref|ZP_05889287.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AN-5034]
gi|260897926|ref|ZP_05906422.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
Peru-466]
gi|260903461|ref|ZP_05911856.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ4037]
gi|28805979|dbj|BAC59255.1| pyruvate formate-lyase 1 activating enzyme [Vibrio parahaemolyticus
RIMD 2210633]
gi|149749368|gb|EDM60141.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ3810]
gi|308085486|gb|EFO35181.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
Peru-466]
gi|308093910|gb|EFO43605.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AN-5034]
gi|308110360|gb|EFO47900.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
AQ4037]
gi|308113908|gb|EFO51448.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
K5030]
gi|328473257|gb|EGF44105.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
10329]
Length = 246
Score = 61.1 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 24/168 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A + G ++TNG I
Sbjct: 53 VEEIIAEAKSYRHFMNASGGGITCSGGEAMLQPEFVRDFFRAAHAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
+ + DL + + +K Q + N DF R+
Sbjct: 113 HTEVIDEVLDA---TDLVMLDIKHMKDEIHQDFIGVSNRRTLDFARYL 157
>gi|169334502|ref|ZP_02861695.1| hypothetical protein ANASTE_00905 [Anaerofustis stercorihominis DSM
17244]
gi|169259219|gb|EDS73185.1| hypothetical protein ANASTE_00905 [Anaerofustis stercorihominis DSM
17244]
Length = 235
Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 30/197 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F + G G VF GC +C +C K G +
Sbjct: 10 ETFGAVDGPGIRT----VFF-LQGCPA-----------RCLYCHNP----DSWKIGAGSE 49
Query: 68 DQLADLIEEQWITGEK--EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ DL++ + +GGEPLLQ + I+AL K A++ +GT
Sbjct: 50 VEAEDLVKRAKRGIPYYGDDGGVTFSGGEPLLQGEFLIEAIKALKKENINCAIDISGTYY 109
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS----PENYIGFDFERFSLQPM--D 177
+ I + D+K +E + + + ++ D + + Q +
Sbjct: 110 DEFSHEAINQADLILLDIKHTNPREFTKITSRNQETLFKIIKDINELDKKVWIRQVIIPS 169
Query: 178 GPFLEENTNLAISYCFQ 194
EE + Q
Sbjct: 170 INDTEEYIESLNEFIKQ 186
>gi|269967633|ref|ZP_06181683.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
40B]
gi|269827720|gb|EEZ82004.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
40B]
Length = 246
Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 25/172 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEEIISEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAKTEGIHTCLDTNGYVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
+ + DL + + +K Q + N DF R LQ +
Sbjct: 113 HTDVIDEVLDA---TDLVMLDIKHMKDEVHQDLIGVSNRRTLDFAR-YLQKI 160
>gi|167754788|ref|ZP_02426915.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402]
gi|237735925|ref|ZP_04566406.1| pyruvate formate-lyase activating enzyme [Mollicutes bacterium D7]
gi|167705620|gb|EDS20199.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402]
gi|229381670|gb|EEO31761.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. D7]
Length = 255
Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 19/125 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC L +C+FC
Sbjct: 19 ESFGSVDGPGI---RYIIF--LHGCPL-----------RCKFCHNPDTWANAKSTMEMTP 62
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+ + ++GGEPLLQ+D + L + K G ++T+G
Sbjct: 63 QEAIAKALKYKSY-WGNDGGITVSGGEPLLQIDFLIELFKLAKKEGINTCIDTSGGNFTR 121
Query: 126 QGIDW 130
+ +
Sbjct: 122 EEPFF 126
>gi|153001208|ref|YP_001366889.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS185]
gi|160875881|ref|YP_001555197.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS195]
gi|217972870|ref|YP_002357621.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
OS223]
gi|151365826|gb|ABS08826.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS185]
gi|160861403|gb|ABX49937.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS195]
gi|217498005|gb|ACK46198.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS223]
gi|315268072|gb|ADT94925.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS678]
Length = 246
Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 54/189 (28%), Gaps = 32/189 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F T+ G G F F GC +C++C G
Sbjct: 10 VESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLDGGKEV 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L I + +GGE +LQ + L A + G ++TNG +
Sbjct: 52 LVDELMSQIISYRPFLDASNGGVTASGGEAILQAEFVAELFTACQQEGIHTCLDTNGFVR 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
D + + L ++ + +LQ E
Sbjct: 112 KYT----------PVIDELLDHTNLVLLDIKHMDDEKHIELTKVSNHRTLQ-FAQYLAER 160
Query: 184 NTNLAISYC 192
N I Y
Sbjct: 161 NQATWIRYV 169
>gi|313114814|ref|ZP_07800314.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622869|gb|EFQ06324.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 251
Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 20/126 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R VF GC L +C++C G +
Sbjct: 14 ESFGSVDGPGV---RFVVF--LQGCAL-----------RCKYCHNPETW-AAEGGEEWTA 56
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP 125
++L + + ++GGEPL ++ + +G A++T G P
Sbjct: 57 EKLFQRVYRYR-NYWGKKGGITVSGGEPLRQMEFLTAFFELARSKGVHTALDTAGQPFRP 115
Query: 126 QGIDWI 131
D++
Sbjct: 116 DDPDYL 121
>gi|292669987|ref|ZP_06603413.1| pyruvate formate-lyase-activating enzyme [Selenomonas noxia ATCC
43541]
gi|292648399|gb|EFF66371.1| pyruvate formate-lyase-activating enzyme [Selenomonas noxia ATCC
43541]
Length = 256
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C G +
Sbjct: 16 ESFGSVDGPGIR------FIVFMQGC-----------RYRCQYCHNPETWT-AEGGYEAS 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
+++ +K G ++GGEPLLQ++ L + ++G A++T G
Sbjct: 58 PEEIFQQAMRYRPYWKKTG-GITVSGGEPLLQLEFVTELFRLAKEKGVTTAIDTAG 112
>gi|218135329|ref|ZP_03464133.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC
43243]
gi|217990714|gb|EEC56725.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC
43243]
Length = 248
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 36/213 (16%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ I E F ++ G G R +F GC+ +C+FC
Sbjct: 1 MGKIHSIESFGSVDGPGV---RFVIF--TQGCH-----------MRCQFCHNPDTW-NME 43
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G + D L + +G ++GGEPLLQ+D + L +G ++T
Sbjct: 44 DGEEMSADDLLKQALRYKSYWKNKG-GITVSGGEPLLQMDFLIELFTKAKAKGVNTTLDT 102
Query: 119 NGTIEPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE--- 169
+G + + + V+ D+K ++ K + N + + + E
Sbjct: 103 SGNPFTRKEPFFSRFKELMEVTDLVMLDIKQIDDEKHKTLTGWSNANILDMAEYLSETGK 162
Query: 170 ----RFSLQPMDGPFLEENTNLAISYCFQNPKW 198
R L P G +E ++
Sbjct: 163 PMWIRHVLVPG-GSDDDELLKRLDAFIKTLKNV 194
>gi|257440313|ref|ZP_05616068.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
prausnitzii A2-165]
gi|257197347|gb|EEU95631.1| pyruvate formate-lyase 1-activating enzyme [Faecalibacterium
prausnitzii A2-165]
Length = 251
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R VF GC L +C++C G ++
Sbjct: 14 ESFGSVDGPGV---RFVVF--LQGCAL-----------RCKYCHNPETWS-AEGGTEWSP 56
Query: 68 DQLADLIEEQWITGEKEGR--YCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIE 123
++L + W G+ ++GGEPL + + Q +G A++T G
Sbjct: 57 EKLFQHV---WRYRNYWGKKGGITVSGGEPLRQMDFLIKFFQLARAKGVHTALDTAGQPF 113
Query: 124 PPQGIDWI 131
P ++
Sbjct: 114 QPDDPAYL 121
>gi|284048152|ref|YP_003398491.1| pyruvate formate-lyase activating enzyme [Acidaminococcus
fermentans DSM 20731]
gi|283952373|gb|ADB47176.1| pyruvate formate-lyase activating enzyme [Acidaminococcus
fermentans DSM 20731]
Length = 243
Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC+ +C +C G G
Sbjct: 10 ETFGSVDGPGT---RFIIFV--QGCH-----------MRCLYCHNVDTWKCGQGGQLKTA 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
D+L D E EG ++GGEPLLQ+ + L + RG ++T G
Sbjct: 54 DELLDQAERYRPYWGPEG-GITVSGGEPLLQMEFLLDLFRKAKARGIGTCIDTAGQ 108
>gi|291546361|emb|CBL19469.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. SR1/5]
Length = 249
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 36/168 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F SGC + +C+FC T G Y
Sbjct: 15 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDTWQMKT-GTEYTA 57
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D+L + ++GGEPLLQ+D L + K G ++T+G
Sbjct: 58 DELLEKACRYRSY-WGSKGGITVSGGEPLLQIDFLTELFRKAKKLGIHTTLDTSGN---- 112
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ ++ + + ++ + D E+ +
Sbjct: 113 ------------PYTEEGPWYEKWEELMKYTDLVMLDIKHIDEEQHKI 148
>gi|313896806|ref|ZP_07830353.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312974253|gb|EFR39721.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 252
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 24/121 (19%)
Query: 5 SIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I E F ++ G G F F GC +C++C +
Sbjct: 7 RINATESFGSVDGPGIR------FIVFVQGC-----------RYRCQYCHNPETW-EAEG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G +++ K ++GGEPLLQ+D L + +G A++T
Sbjct: 49 GYEATPEEIFRQALRYRPY-WKNTGGITVSGGEPLLQLDFVTELFRLAKGKGVNTAIDTA 107
Query: 120 G 120
G
Sbjct: 108 G 108
>gi|145299597|ref|YP_001142438.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142852369|gb|ABO90690.1| pyruvate formate-lyase 1 activating enzyme [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 261
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C++C G
Sbjct: 24 VETCGTVDGPGIR------FIVFMQGC-----------LMRCKYCHNRDTW-DTQGGREV 65
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V +L I G +GGE +LQ + L A ++G ++TNG +
Sbjct: 66 TVPELMSDITSYRHFMNASGGGVTASGGEAMLQQNFIAELFAACKEKGVHTCLDTNGFVR 125
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ L IK + K +
Sbjct: 126 HYDEQLDKVLDNTDLVLLDIKQINDEKHI 154
>gi|154504499|ref|ZP_02041237.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149]
gi|153794981|gb|EDN77401.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149]
Length = 257
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
MK Y I E F ++ G G R +F SGC +C+FC
Sbjct: 16 MKGY-IHSTESFGSVDGPGV---RFLIFV--SGCP-----------MRCQFCHNPDTWSM 58
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEI 114
T +L+++ W G+ ++GGEPLLQ+D + L + ++G
Sbjct: 59 KTG----TQMSADELLDKAWKYRSYWGKSGGITVSGGEPLLQIDFLLELFKKAKEKGIHT 114
Query: 115 AVETNG 120
++T+G
Sbjct: 115 TIDTSG 120
>gi|265767393|ref|ZP_06095059.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
gi|263252698|gb|EEZ24210.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
Length = 261
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/214 (21%), Positives = 66/214 (30%), Gaps = 37/214 (17%)
Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---- 54
MK +I E F G G +F GC L +C +C
Sbjct: 12 MKTGTIFSVEEFAIHDGPGIRT---TIF--LKGCPL-----------RCAWCHNPEGISP 55
Query: 55 -------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
G++ G + V++L +IE+ LTGGEPL Q D +
Sbjct: 56 QPQYMIKKGVKSICGYQITVEELVTMIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLR 115
Query: 108 NKRGFEIAVETNGT------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161
A+ET+G E D I K + + N++
Sbjct: 116 QLPDIHTAIETSGYANTHIFNEVTSLADLILFDIKHTDPEMHRKYTGVDNAIILENLALL 175
Query: 162 NYIGFDF-ERFSLQPMDGPFLEENTNLAISYCFQ 194
G DF R L P D EN + +
Sbjct: 176 CNSGRDFIIRIPLIP-DVNDTRENMSAILEKIKD 208
>gi|157374846|ref|YP_001473446.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sediminis
HAW-EB3]
gi|157317220|gb|ABV36318.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
sediminis HAW-EB3]
Length = 246
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 21/122 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C G
Sbjct: 11 ESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLHGGREIE 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L I E G +GGE +LQ + L +A K G ++TNG +
Sbjct: 53 VDELMTQIISYRPFLEASGGGVTASGGEAILQAEFVSALFKACKKEGIHTCLDTNGFVRK 112
Query: 125 PQ 126
Sbjct: 113 HT 114
>gi|172056644|ref|YP_001813104.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum
255-15]
gi|171989165|gb|ACB60087.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum
255-15]
Length = 242
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 21/167 (12%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC L +C++C G G
Sbjct: 11 VESCGTVDGPGIR------FIVFTQGCPL-----------RCQYCHNADTWEFGC-GRSV 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+ ++ + E E G +GGEPL Q ++ ++G ++T G++
Sbjct: 53 SATEIIEEAESYRSFFEATGGGITFSGGEPLAQPEFLEAALREAKQKGMHTVIDTAGSVV 112
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + D+K +++ + N + + ER
Sbjct: 113 PKNIDRILDYTDLVLLDIKHIDDATCRILTGRSNANTLAFAKRLAER 159
>gi|317499702|ref|ZP_07957960.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|316893008|gb|EFV15232.1| radical SAM superfamily protein [Lachnospiraceae bacterium
5_1_63FAA]
Length = 157
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L +CRFC + + G Y ++L
Sbjct: 15 VDGPGIRT---VIF--LQGCAL-----------RCRFCHNPDTW-ELSGGTEYTPEELVA 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
I + E +GGEPLLQ D ++ G ++T G
Sbjct: 58 KIRRFKPYFK-EDGGVTFSGGEPLLQPDFLKETLKLCKNEGIHTCIDTAGY 107
>gi|315608967|ref|ZP_07883939.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC
33574]
gi|315249347|gb|EFU29364.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC
33574]
Length = 249
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 22/115 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C+FC G G +
Sbjct: 16 ETFGSVDGPGIR------FLIFLQGCP-----------MRCQFCHNPDSWQTGV-GEKMT 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
D+L D E +EG ++GGE L+Q+D L + ++RG ++T+
Sbjct: 58 ADELLDRAEHYRSYWGREG-GITVSGGEALMQIDFLTELFRKAHERGINTCLDTS 111
>gi|266619565|ref|ZP_06112500.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi
DSM 13479]
gi|288868850|gb|EFD01149.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi
DSM 13479]
Length = 256
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 23/135 (17%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E F T+ G G VF GC +C++C
Sbjct: 1 MTTGQIHSIESFGTVDGPGIRM---VVF--TKGCP-----------MRCQYCHNPDTWSL 44
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
G V ++ D E G +TGGEPLLQ++ L + +R +
Sbjct: 45 H-GGTAMTVSEILDQYEASRPF--YRGGGITVTGGEPLLQMEFVTELFEEACRRDIHTCL 101
Query: 117 ETNGTIEPPQGIDWI 131
+T+G ++
Sbjct: 102 DTSGVTFRASDQAYL 116
>gi|323496041|ref|ZP_08101104.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM
21326]
gi|323318932|gb|EGA71880.1| pyruvate formate lyase-activating enzyme 1 [Vibrio sinaloensis DSM
21326]
Length = 246
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 55/175 (31%), Gaps = 25/175 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFMQGC-----------LMRCQYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIINDAKSYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP 179
+ + DL + + +K + N DF R LQ +
Sbjct: 113 HTDVIDEVL---EATDLVMLDLKHMKDEIHHDFIGVSNKRTLDFAR-YLQKLGQK 163
>gi|260495468|ref|ZP_05815594.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
3_1_33]
gi|260197005|gb|EEW94526.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
3_1_33]
Length = 247
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ E +GGEPL Q + L + K G A
Sbjct: 43 LKDKNYIYTPEEIFA---ELNKVRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTA 99
Query: 116 VETNGT 121
++T+G
Sbjct: 100 LDTSGY 105
>gi|261821276|ref|YP_003259382.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium wasabiae
WPP163]
gi|261605289|gb|ACX87775.1| pyruvate formate-lyase activating enzyme [Pectobacterium wasabiae
WPP163]
Length = 246
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIIFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + VS DLK + + N ++ + +R
Sbjct: 113 YDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLDFARYLAKR 160
>gi|227111995|ref|ZP_03825651.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 246
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIIFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + VS DLK + + N ++ + +R
Sbjct: 113 YDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLDFARYLAKR 160
>gi|288927096|ref|ZP_06420984.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17]
gi|288336123|gb|EFC74516.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17]
Length = 243
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 22/115 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +CRFC G G +
Sbjct: 13 ETFGSVDGPGIR------FLIFLQGCP-----------MRCRFCHNPDSWQTGV-GEKMT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
D+L D E +EG ++GGE L+Q+D L + ++RG ++T+
Sbjct: 55 TDELLDRAEHYRSYWGREG-GITVSGGEALMQIDFLTELFRKAHERGINTCLDTS 108
>gi|227328163|ref|ZP_03832187.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 246
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIIFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + VS DLK + + N ++ + +R
Sbjct: 113 YDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLDFARYLAKR 160
>gi|253688115|ref|YP_003017305.1| pyruvate formate-lyase activating enzyme [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754693|gb|ACT12769.1| pyruvate formate-lyase activating enzyme [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 246
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIIFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + VS DLK + + N ++ + +R
Sbjct: 113 YDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLDFARYLAKR 160
>gi|134297917|ref|YP_001111413.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
MI-1]
gi|134050617|gb|ABO48588.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
MI-1]
Length = 229
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G VF F GC +CR+C G +
Sbjct: 9 ESCGTVDGPGIRC---VVF--FQGC-----------LLRCRYCHNPDTW-DLLGGQEMDS 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123
D++ + G L+GGEPLLQ D Q K G AV+T+G I+
Sbjct: 52 DEIVKKVRRFKSYFHNNG-GITLSGGEPLLQPDFAFAILQQCKKEGIHTAVDTSGCID 108
>gi|256026676|ref|ZP_05440510.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11]
gi|289764672|ref|ZP_06524050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11]
gi|289716227|gb|EFD80239.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D11]
Length = 244
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ E +GGEPL Q + L + K G A
Sbjct: 43 LKDKNYIYTPEEIFA---ELNKVRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTA 99
Query: 116 VETNGT 121
++T+G
Sbjct: 100 LDTSGY 105
>gi|182417544|ref|ZP_02948871.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
5521]
gi|237665689|ref|ZP_04525677.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182378713|gb|EDT76240.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
5521]
gi|237658636|gb|EEP56188.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 264
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 36/207 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC+ +C+FC G
Sbjct: 24 ETFGSVDGPGVR------FVTFLKGCH-----------MRCQFCHNPDTW-DINGGETRT 65
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D+L +K G ++GGEPLLQ+D + + +G + ++T+G
Sbjct: 66 ADELLSQALRYKTYWKKGG-GITVSGGEPLLQIDFLIEFFKKAKSKGVHVTLDTSGNPFT 124
Query: 125 PQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RF 171
+ + + V+ D+K ++ K++ N + + F E R
Sbjct: 125 REEPFFSKFNELMKVTDLVMLDIKQIDEEKHKILTGWSNSNILDMAKFLSEINKPVWIRH 184
Query: 172 SLQPMDGPFLEENTNLAISYCFQNPKW 198
L P G +E +
Sbjct: 185 VLVPG-GSDNDEQLIKLDEFIKTLKNV 210
>gi|262191309|ref|ZP_06049502.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
5369-93]
gi|262032805|gb|EEY51350.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
5369-93]
Length = 246
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LFRCKYCHNRDTW-DTHTGREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q + N DF R+ Q
Sbjct: 113 FTPVIDEVL---EVTDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159
>gi|160934052|ref|ZP_02081439.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753]
gi|156866725|gb|EDO60097.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753]
Length = 245
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F L G G GC L +C FC T
Sbjct: 14 VETFGALDGPGIR-----YVLFLQGCPL-----------RCGFCHNPDTWQACTGKAVTP 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
D D+++ + L+GGEPLLQ + LI + G AV+T G+I
Sbjct: 58 EDAFEDILKYKNFISSGG---VTLSGGEPLLQPEFCQALISLCHSAGIHCAVDTAGSIP 113
>gi|297579388|ref|ZP_06941316.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
gi|297536982|gb|EFH75815.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
Length = 246
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LFRCKYCHNRDTW-DTHTGREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q + N DF R+ Q
Sbjct: 113 FTPVIDEVL---EVTDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159
>gi|225569138|ref|ZP_03778163.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM
15053]
gi|225161937|gb|EEG74556.1| hypothetical protein CLOHYLEM_05218 [Clostridium hylemonae DSM
15053]
Length = 230
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 21/151 (13%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F +GCN +C FC + + K ++++ ++++ +
Sbjct: 21 TIF--TAGCNF-----------RCPFCHNASLVVDTYKNEEITQEEVSAFLKKRMGVLDG 67
Query: 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
+TGGEPL+Q P ++ + + G+ + ++TNG+ V K +
Sbjct: 68 ----VCVTGGEPLIQSDIEPFLRQIKEMGYAVKLDTNGSFPDKLKR---LVDEKLVDYVA 120
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ + + + + L
Sbjct: 121 MDIKNSQESYGKTIGIRDYDIRNIHRSVQYL 151
>gi|237747112|ref|ZP_04577592.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
HOxBLS]
gi|229378463|gb|EEO28554.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
HOxBLS]
Length = 227
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 26/142 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G A VFC GC +CR+C + G G
Sbjct: 17 FTTIDFPGRLA--AVVFC--QGCP-----------WRCRYCHNRHLLPTGEGGR-----Y 56
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP---- 124
L + T + V +GGEPLLQ L+++GFE+A+ T+G
Sbjct: 57 LWQDVLAWLKTRQGLLEGVVFSGGEPLLQKQLPEAADQLHRQGFEVALHTSGVYPERLAK 116
Query: 125 -PQGIDWICVSPKAGCDLKIKG 145
I+W+ + KA D +
Sbjct: 117 VLPLIEWVGLDIKAPFDEYREI 138
>gi|182626346|ref|ZP_02954101.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D
str. JGS1721]
gi|177908365|gb|EDT70910.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D
str. JGS1721]
Length = 235
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 26/145 (17%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F GC +C FC + KG Y ++L
Sbjct: 15 VDGPGIR------FVVFMQGC-----------GIRCAFCHNPDTWCK-DKGTEYTPEELV 56
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG-----TIEP 124
+ I+ G +GGEPLLQ + ++ K G ++T G E
Sbjct: 57 NKIKRFKTYFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEI 116
Query: 125 PQGIDWICVSPKAGCDLKIKGGQEL 149
+ +D I K K K ++
Sbjct: 117 LEYVDLILFDVKETDPEKYKNLVKV 141
>gi|261210513|ref|ZP_05924806.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
gi|260840298|gb|EEX66869.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
Length = 246
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LFRCKYCHNRDTW-DTHTGREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q + N DF R+ Q
Sbjct: 113 FTPVIDEVL---EVTDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159
>gi|227542034|ref|ZP_03972083.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182182|gb|EEI63154.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 289
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 27/189 (14%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F SGC L +C +C + +G +V+ +
Sbjct: 61 VDGPGTRM---TLF--LSGCPL-----------RCVYCHNPDT-MDMKEGTLEDVEAIIK 103
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT------IEP 124
I+ G ++GGEPL + +++A++ G A++T+G
Sbjct: 104 KIKRYRPVFNASGGGLTISGGEPLFQIAFTRRILEAVHAAGIHTAIDTSGFLGARLTDND 163
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
ID + K+G K + RF L P E
Sbjct: 164 IANIDLFLLDVKSGFPDTYKRVTSRDLQPTLDFGERLTKLGKKIWIRFVLVPGWT-DAPE 222
Query: 184 NTNLAISYC 192
N
Sbjct: 223 NIERVAQIV 231
>gi|227488973|ref|ZP_03919289.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091049|gb|EEI26361.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 268
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 27/189 (14%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F SGC L +C +C + +G +V+ +
Sbjct: 40 VDGPGTRM---TLF--LSGCPL-----------RCVYCHNPDT-MDMKEGTLEDVEAIIK 82
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT------IEP 124
I+ G ++GGEPL + +++A++ G A++T+G
Sbjct: 83 KIKRYRPVFNASGGGLTISGGEPLFQIAFTRRILEAVHAAGIHTAIDTSGFLGARLTDND 142
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELK-LVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
ID + K+G K + RF L P E
Sbjct: 143 IANIDLFLLDVKSGFPDTYKRVTSRDLQPTLDFGERLTKLGKKIWIRFVLVPGWT-DAPE 201
Query: 184 NTNLAISYC 192
N
Sbjct: 202 NIERVAQIV 210
>gi|166031808|ref|ZP_02234637.1| hypothetical protein DORFOR_01509 [Dorea formicigenerans ATCC
27755]
gi|166028261|gb|EDR47018.1| hypothetical protein DORFOR_01509 [Dorea formicigenerans ATCC
27755]
Length = 241
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 24/118 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F +GC +C+FC +
Sbjct: 9 ESFGSVDGPGV---RFVIF--TAGCP-----------MRCQFCHNP----DTWNMKTGTL 48
Query: 68 DQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
DLI++ G ++GGEPLLQ+D L + + G ++T+G
Sbjct: 49 TSTDDLIKKALRYRSYWGNEGGITVSGGEPLLQIDFLTELFKKAKENGIHTTLDTSGN 106
>gi|15641871|ref|NP_231503.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121587313|ref|ZP_01677085.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
2740-80]
gi|121727114|ref|ZP_01680288.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
gi|147674120|ref|YP_001217403.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O395]
gi|153213085|ref|ZP_01948623.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
gi|153818851|ref|ZP_01971518.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
8457]
gi|153823101|ref|ZP_01975768.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
gi|153825235|ref|ZP_01977902.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
gi|153830545|ref|ZP_01983212.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
gi|183179507|ref|ZP_02957718.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
gi|227081998|ref|YP_002810549.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
gi|229508034|ref|ZP_04397539.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
330286]
gi|229511727|ref|ZP_04401206.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
gi|229515249|ref|ZP_04404709.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
gi|229518865|ref|ZP_04408308.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
gi|229520329|ref|ZP_04409755.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
11079-80]
gi|229523888|ref|ZP_04413293.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
albensis VL426]
gi|229529108|ref|ZP_04418498.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
gi|229607581|ref|YP_002878229.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae
MJ-1236]
gi|254226038|ref|ZP_04919637.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
gi|254286774|ref|ZP_04961728.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
AM-19226]
gi|254848956|ref|ZP_05238306.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
gi|255745371|ref|ZP_05419320.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
gi|262153526|ref|ZP_06028655.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
91/1]
gi|262167426|ref|ZP_06035133.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
gi|298498092|ref|ZP_07007899.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
757]
gi|9656400|gb|AAF95017.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121548473|gb|EAX58531.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
2740-80]
gi|121630492|gb|EAX62884.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
gi|124116132|gb|EAY34952.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
gi|125621421|gb|EAZ49756.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
gi|126510579|gb|EAZ73173.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
8457]
gi|126519392|gb|EAZ76615.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
gi|146316003|gb|ABQ20542.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
gi|148873975|gb|EDL72110.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
gi|149741214|gb|EDM55265.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
gi|150423201|gb|EDN15148.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
AM-19226]
gi|183012918|gb|EDT88218.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
gi|227009886|gb|ACP06098.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
gi|227013767|gb|ACP09977.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
gi|229332882|gb|EEN98368.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
gi|229337469|gb|EEO02486.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
albensis VL426]
gi|229342695|gb|EEO07687.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
11079-80]
gi|229343554|gb|EEO08529.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
gi|229347954|gb|EEO12913.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
gi|229351692|gb|EEO16633.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
gi|229355539|gb|EEO20460.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
330286]
gi|229370236|gb|ACQ60659.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae MJ-1236]
gi|254844661|gb|EET23075.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
gi|255737201|gb|EET92597.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
gi|262024123|gb|EEY42817.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
gi|262030653|gb|EEY49288.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
91/1]
gi|297542425|gb|EFH78475.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
757]
gi|327484419|gb|AEA78826.1| Pyruvate formate-lyase activating enzyme [Vibrio cholerae
LMA3894-4]
Length = 246
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LFRCKYCHNRDTW-DTHTGREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q + N DF R+ Q
Sbjct: 113 FTPVIDEVL---EVTDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159
>gi|261367872|ref|ZP_05980755.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum
variabile DSM 15176]
gi|282570678|gb|EFB76213.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum
variabile DSM 15176]
Length = 255
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G R +F GC + +C++C +
Sbjct: 13 VETFGLVDGPGV---RYIIF--LQGC-----------AMRCQYCHNPETWAFTRDTEKTP 56
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+ + + ++GGEPLLQ+D + + +G A++T+G
Sbjct: 57 QEAFDAALRYRNYWRNNG--GLTISGGEPLLQMDFVSEVFRLARAKGIHTALDTSGQPFA 114
Query: 125 PQGIDWI 131
P DW+
Sbjct: 115 PDNADWM 121
>gi|237745221|ref|ZP_04575702.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 7_1]
gi|229432450|gb|EEO42662.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 7_1]
Length = 242
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M+ Y I E F T G G F F GC L +C +C
Sbjct: 1 MQGY-INSFESFGTKDGPGIR------FVVFMQGCPL-----------RCLYCHNVDTWE 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIA 115
K Y +++ E +GGEPL Q + L + K G A
Sbjct: 43 LKDKNYIYTPEEIFA---ELNKVRAFLTGGITASGGEPLFQASFILELFKLCKKNGIHTA 99
Query: 116 VETNGT 121
++T+G
Sbjct: 100 LDTSGY 105
>gi|168207460|ref|ZP_02633465.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E
str. JGS1987]
gi|170661174|gb|EDT13857.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E
str. JGS1987]
Length = 235
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 26/145 (17%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F GC +C FC + KG Y ++L
Sbjct: 15 VDGPGIR------FVVFMQGC-----------GIRCAFCHNPDTWCK-DKGTEYTPEELV 56
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG-----TIEP 124
+ I+ G +GGEPLLQ + ++ K G ++T G E
Sbjct: 57 NKIKRFKTYFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAGVGLGNYEEI 116
Query: 125 PQGIDWICVSPKAGCDLKIKGGQEL 149
+ +D I K K K ++
Sbjct: 117 LEYVDLILFDVKETDPEKYKNLVKV 141
>gi|330837492|ref|YP_004412133.1| pyruvate formate-lyase activating enzyme [Spirochaeta coccoides DSM
17374]
gi|329749395|gb|AEC02751.1| pyruvate formate-lyase activating enzyme [Spirochaeta coccoides DSM
17374]
Length = 258
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC + T G ++
Sbjct: 14 ESFGSVDGPGVR------FIVFMQGC-----------KMRCQFCHNPDTW-KMTGGTVFS 55
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+QL E + ++GGEPLLQ+D + + +RG I ++T G
Sbjct: 56 SEQLLAQAERFRPY-WGKDGGITISGGEPLLQIDFLLDFTRKAKERGINIVLDTCGQ 111
>gi|253582696|ref|ZP_04859917.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC
27725]
gi|251835566|gb|EES64106.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC
27725]
Length = 243
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 24/172 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F GC L +C+FC + R
Sbjct: 11 ESFGTVDGPGIR------FVLFLQGCPL-----------RCKFCHNPDTWNISDEKIRER 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+ + ++ ++ + +TGGEP LQ D + L + + G V+T+G I
Sbjct: 54 AVETFEKVK-KYKGYFGKKGGLTVTGGEPFLQADFILELFKLCKEDGINTVVDTSGYIFN 112
Query: 125 PQGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ + + + D+K K +EL V + + Y+ +R +
Sbjct: 113 EKVKEVLEYTDLVLLDIKAIDEKVYKELTGVELENTLKFAQYLKEKGKRVWI 164
>gi|281420400|ref|ZP_06251399.1| pyruvate formate-lyase 1-activating enzyme [Prevotella copri DSM
18205]
gi|281405545|gb|EFB36225.1| pyruvate formate-lyase 1-activating enzyme [Prevotella copri DSM
18205]
Length = 248
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 30/179 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C+FC G G ++
Sbjct: 15 ESFGSVDGPGIR------FLIFLQGCP-----------MRCQFCHNPDSWKTGV-GEEWS 56
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D L D E + ++GGE L+Q+D + L + ++RG ++T+
Sbjct: 57 ADDLLDKAERFKSY-WGDKGGITVSGGEALMQIDFLIELFEKAHQRGINTCLDTSAQPFR 115
Query: 125 PQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+G + + V+ D+K +E + + NV+ + + E P+
Sbjct: 116 KEGAFFDKFERLMTVTDTVLLDIKHINDEEHRKLTRHSNVNILDCARYLSEIHK--PVW 172
>gi|167758384|ref|ZP_02430511.1| hypothetical protein CLOSCI_00724 [Clostridium scindens ATCC 35704]
gi|167664281|gb|EDS08411.1| hypothetical protein CLOSCI_00724 [Clostridium scindens ATCC 35704]
Length = 241
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 26/127 (20%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E F ++ G G R +F SGC + +C+FC
Sbjct: 1 MTKGYIHSLESFGSVDGPGV---RYVIF--TSGC-----------AMRCQFCHNP----D 40
Query: 59 GTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEI 114
+LIE+ ++GGEPLLQ+D + L + + G
Sbjct: 41 TWNKRAGTPYTADELIEKALKYRSYWGSKGGITVSGGEPLLQIDFLLELFERARQEGIHT 100
Query: 115 AVETNGT 121
A++T+G
Sbjct: 101 ALDTSGN 107
>gi|229825667|ref|ZP_04451736.1| hypothetical protein GCWU000182_01029 [Abiotrophia defectiva ATCC
49176]
gi|229790230|gb|EEP26344.1| hypothetical protein GCWU000182_01029 [Abiotrophia defectiva ATCC
49176]
Length = 286
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 21/117 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R +F GC +C++C + G +
Sbjct: 24 ETFGTVDGPGT---RYVIF--LKGCP-----------MRCKYCHNPDTW-EFAGGTEMTL 66
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTI 122
D++ + TGGEPL L+ L + G ++T+G
Sbjct: 67 DEIFAGYYSKKEF--YRKGGITCTGGEPLGQLKFVTALFKRAKDEGIHTCLDTSGIY 121
>gi|110800676|ref|YP_695803.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
ATCC 13124]
gi|110675323|gb|ABG84310.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
ATCC 13124]
Length = 235
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 21/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F GC +C FC + KG Y ++L
Sbjct: 15 VDGPGIR------FVVFMQGC-----------GIRCAFCHNPDTWCK-DKGTEYTPEELV 56
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ I+ G +GGEPLLQ + ++ K G ++T G
Sbjct: 57 NKIKRFKTYFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAG 107
>gi|149134307|ref|YP_001293879.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
str. 13]
gi|18144815|dbj|BAB80860.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
str. 13]
Length = 235
Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 21/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F GC +C FC + KG Y ++L
Sbjct: 15 VDGPGIR------FVVFMQGC-----------GIRCAFCHNPDTWCK-DKGTEYTPEELV 56
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ I+ G +GGEPLLQ + ++ K G ++T G
Sbjct: 57 NKIKRFKTYFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAG 107
>gi|237807654|ref|YP_002892094.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
9187]
gi|237499915|gb|ACQ92508.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
9187]
Length = 248
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ETCGTVDGPGIR------FIAFFQGC-----------LMRCKYCHNRDTW-DTEGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD L + + G +GGE LQ + +A G ++TNG I
Sbjct: 53 VDDLMKDLLAYRHFIKASGGGVTASGGEATLQKEFVTEWFKACKAEGIHTCLDTNGFIRH 112
Query: 125 PQG 127
Sbjct: 113 YDE 115
>gi|167766973|ref|ZP_02439026.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
gi|167710948|gb|EDS21527.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
gi|291559683|emb|CBL38483.1| pyruvate formate-lyase 1-activating enzyme [butyrate-producing
bacterium SSC/2]
Length = 244
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L +CRFC + + G Y ++L
Sbjct: 15 VDGPGIRT---VIF--LQGCAL-----------RCRFCHNPDTW-ELSGGTEYTPEKLVA 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
I + E +GGEPLLQ D ++ G ++T G
Sbjct: 58 KIRRFKPYFK-EDGGVTFSGGEPLLQPDFLKETLKLCKNEGIHTCIDTAGY 107
>gi|320530476|ref|ZP_08031534.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas artemidis
F0399]
gi|320137309|gb|EFW29233.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas artemidis
F0399]
Length = 252
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 24/121 (19%)
Query: 5 SIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
I E F ++ G G F F GC +C++C +
Sbjct: 7 RINATESFGSVDGPGIR------FIVFVQGC-----------RYRCQYCHNPETW-ETEG 48
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G +++ K ++GGEPLLQ+D L + +G AV+T
Sbjct: 49 GYEATPEEIFRQALRYRPY-WKNTGGITVSGGEPLLQLDFVTELFRLAKVKGVNTAVDTA 107
Query: 120 G 120
G
Sbjct: 108 G 108
>gi|170727228|ref|YP_001761254.1| pyruvate formate lyase-activating enzyme 1 [Shewanella woodyi ATCC
51908]
gi|169812575|gb|ACA87159.1| pyruvate formate-lyase activating enzyme [Shewanella woodyi ATCC
51908]
Length = 246
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C G
Sbjct: 11 ESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLHGGKDIE 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
V++L I E G +GGE +LQ + L +A K G ++TNG
Sbjct: 53 VEELMSQIISYRPFLESSGGGVTASGGEAILQAEFVSALFEACKKEGIHTCLDTNGF 109
>gi|110802629|ref|YP_698492.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
SM101]
gi|168211839|ref|ZP_02637464.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B
str. ATCC 3626]
gi|168218087|ref|ZP_02643712.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
NCTC 8239]
gi|110683130|gb|ABG86500.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
SM101]
gi|170710218|gb|EDT22400.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B
str. ATCC 3626]
gi|182379907|gb|EDT77386.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
NCTC 8239]
Length = 235
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 21/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F GC +C FC + KG Y ++L
Sbjct: 15 VDGPGIR------FVVFMQGC-----------GIRCAFCHNPDTWCK-DKGTEYTPEELV 56
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ I+ G +GGEPLLQ + ++ K G ++T G
Sbjct: 57 NKIKRFKTYFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAG 107
>gi|168214980|ref|ZP_02640605.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
CPE str. F4969]
gi|170713601|gb|EDT25783.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
CPE str. F4969]
Length = 235
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 21/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F GC +C FC + KG Y ++L
Sbjct: 15 VDGPGIR------FVVFMQGC-----------GIRCAFCHNPDTWCK-DKGTEYTPEELV 56
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ I+ G +GGEPLLQ + ++ K G ++T G
Sbjct: 57 NKIKRFKTYFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAG 107
>gi|291543729|emb|CBL16838.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. 18P13]
Length = 241
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 21/128 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F + G G R VF SGC L +C +C Q
Sbjct: 10 ESFGAVDGPGI---RFVVF--LSGCPL-----------RCLYCHNPDTWEQKQT-LCMTP 52
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
Q+ + I + + L+GGEPL+Q L+ + GF A++T+G+I
Sbjct: 53 PQVMEKIRSERSFLLRG--GVTLSGGEPLMQPAFCEELLTLCRQEGFHTAIDTSGSIPLS 110
Query: 126 QGIDWICV 133
Q I +
Sbjct: 111 QSRHAIDL 118
>gi|328957563|ref|YP_004374949.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp.
17-4]
gi|328673887|gb|AEB29933.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp.
17-4]
Length = 253
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 59/189 (31%), Gaps = 29/189 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C FC G G Y
Sbjct: 13 ESFGSVDGPGIR------FVTFMQGC-----------RMRCEFCHNPDTWNMG-GGTPYT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
DQL + K+G ++GGEPLL +D + + + G ++T G
Sbjct: 55 ADQLLEEALSYKDYWGKKG-GITVSGGEPLLHIDFLIEYFRKAKEEGIHTTLDTCGQPFT 113
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + + + +K L ++ + L M + N
Sbjct: 114 YEEPFF------SRFEELMKYTDLLLFDIKHIDNEKHKRLTMHGNENILN-MSSYLSKIN 166
Query: 185 TNLAISYCF 193
+ I +
Sbjct: 167 KPVWIRHVL 175
>gi|294140395|ref|YP_003556373.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
DSS12]
gi|293326864|dbj|BAJ01595.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
DSS12]
Length = 246
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 39/117 (33%), Gaps = 21/117 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C G
Sbjct: 11 ESFGTVDGPGIR------FIAFMQGC-----------LMRCQYCHNRDTW-DLHGGSEVE 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
V +L + I E G +GGE +LQ + L K G ++TNG
Sbjct: 53 VKELMEQIISYRPFLEASGGGVTASGGEAILQAEFVSELFAECKKEGIHTCLDTNGF 109
>gi|310777957|ref|YP_003966290.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM
2926]
gi|309747280|gb|ADO81942.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM
2926]
Length = 244
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 19/117 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF GC L +C++C +
Sbjct: 12 ESCGTVDGPGL---RYVVF--TQGCPL-----------RCKYCHNPDTWHMPDASYEEDA 55
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + I G L+GGEP +Q + L + + AV+T+G
Sbjct: 56 NYIVKEISRYKPFFRNGG-GMTLSGGEPFMQAEFAKELFRLCKENDINTAVDTSGIY 111
>gi|83590292|ref|YP_430301.1| ribonucleoside-triphosphate reductase, anaerobic-like [Moorella
thermoacetica ATCC 39073]
gi|83573206|gb|ABC19758.1| Ribonucleoside-triphosphate reductase, anaerobic-like protein
[Moorella thermoacetica ATCC 39073]
Length = 234
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCN +C +C + ++ + + ++ +L+
Sbjct: 24 TVF--LGGCNF-----------RCPWCHNADLVLRPSVLPEISPAEVLNLLIR----RRS 66
Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+ +TGGEP L ++ L RGF++ ++TNG+
Sbjct: 67 WVQAVCITGGEPTLAPGLEEFVRTLKSRGFKVKLDTNGSQP 107
>gi|253577953|ref|ZP_04855225.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850271|gb|EES78229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 246
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 23/129 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F SGC + +C+FC + +G Y
Sbjct: 14 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDTW-KMKQGELYTA 56
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT---I 122
D+L ++GGEPLLQ+D + G ++T+G
Sbjct: 57 DELLKKALRYKGY-WGSKGGITVSGGEPLLQMDFLTEFFKKAKAEGVHTNLDTSGNPFTD 115
Query: 123 EPPQGIDWI 131
+ P W+
Sbjct: 116 QEPWHSGWL 124
>gi|226328669|ref|ZP_03804187.1| hypothetical protein PROPEN_02564 [Proteus penneri ATCC 35198]
gi|225203402|gb|EEG85756.1| hypothetical protein PROPEN_02564 [Proteus penneri ATCC 35198]
Length = 53
Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 168 FERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHKFIGI 210
+LQP+ E T L I C + WR S+QTHK++ I
Sbjct: 13 APVVALQPISCK--ESATALCIKTCIER-NWRFSMQTHKYLNI 52
>gi|328947091|ref|YP_004364428.1| pyruvate formate-lyase activating enzyme [Treponema succinifaciens
DSM 2489]
gi|328447415|gb|AEB13131.1| pyruvate formate-lyase activating enzyme [Treponema succinifaciens
DSM 2489]
Length = 248
Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 34/164 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F FSGC L +C++C KG Y
Sbjct: 9 ESFGSVDGPGVR------FIIFFSGCPL-----------RCKYCHNPDTW-DMAKGKLYT 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D+L + +G ++GGEPL+Q+D + L ++G ++T G
Sbjct: 51 ADELLNEALSCKAYWGAKG-GITVSGGEPLMQLDFLLELFTKAKEKGVNTCIDTAGG-PF 108
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLV--FPQVNVSPENYIGF 166
+ +W K K E+ + ++ E +I
Sbjct: 109 TKEGEWF---------EKFKKLMEVTDILLMDIKHIDEEEHIKL 143
>gi|167462221|ref|ZP_02327310.1| hypothetical protein Plarl_06640 [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 247
Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 52/167 (31%), Gaps = 22/167 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F GC L C DT G
Sbjct: 9 ETFGTVDGPGIR------FVLFLQGCALQCQF--------CHNADT----WDTGGGKVME 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR-GFEIAVETNGTIE 123
V+++ IE +TGGEP L L +A R ++++G E
Sbjct: 51 VEEILAEIESYLPYYRSSNGGITVTGGEPTLQAHFVAELFKACKSRFQLHTTLDSSGFCE 110
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
D + V+ DLKI ++ + Q N + +
Sbjct: 111 IDNVQDLMDVTDLVLLDLKIIDREKHIRLTSQPNDRILKTAKWLSDH 157
>gi|254417247|ref|ZP_05030991.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus
chthonoplastes PCC 7420]
gi|196175900|gb|EDX70920.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus
chthonoplastes PCC 7420]
Length = 257
Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R +F GC L + S +C +G V
Sbjct: 25 ESCGTVDGPGI---RFVIF--TQGCPLRCLYCHNPDS-RCI-----------REGQEVTV 67
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
D+L I + G +TGGEPL+Q + + + +G A++T+G
Sbjct: 68 DELMTQIPKYRSYMRFSGGGVTITGGEPLMQPEFVREIFRRCQDQGIHTALDTSGY 123
>gi|127513319|ref|YP_001094516.1| pyruvate formate lyase-activating enzyme 1 [Shewanella loihica
PV-4]
gi|126638614|gb|ABO24257.1| pyruvate formate-lyase activating enzyme [Shewanella loihica PV-4]
Length = 246
Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C G
Sbjct: 11 ESFGTVDGPGIR------FITFMQGC-----------LMRCQYCHNRDTW-DLHGGHEIE 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
VD L + I E G +GGE +LQ + L +A +G ++TNG
Sbjct: 53 VDVLMEQIISYRPFLESSGGGVTASGGEAILQAEFVAALFKACKAQGIHTCLDTNGF 109
>gi|300716075|ref|YP_003740878.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae
Eb661]
gi|299061911|emb|CAX59027.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae
Eb661]
Length = 246
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEELMKDVVSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK +++ N ++ + ++
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQINDDVHQVLVGVSNHRTLDFARYLAKK 160
>gi|319893382|ref|YP_004150257.1| Pyruvate formate-lyase activating enzyme [Staphylococcus
pseudintermedius HKU10-03]
gi|317163078|gb|ADV06621.1| Pyruvate formate-lyase activating enzyme [Staphylococcus
pseudintermedius HKU10-03]
gi|323463552|gb|ADX75705.1| pyruvate formate-lyase-activating enzyme [Staphylococcus
pseudintermedius ED99]
Length = 253
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 27/189 (14%)
Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G + +F GC +C +C
Sbjct: 10 ESLGTVDGPGLRYI----IF--TQGC-----------LLRCLYCHNPDTWKVNEPSRTAT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
D+L + I + G ++GGEPLLQ+ L + L+ +G ++T+
Sbjct: 53 ADELVNEIVPYLPYFQASGGGVTISGGEPLLQMPFIEELFEKLHAQGIHTCIDTS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
G + K D + L + ++ + L + ++
Sbjct: 108 -LGCANDTEAFKKHFDQVLTHTDLLMVDIKHIDNEKHQQLTGKPNTHILNYI-QYLADKG 165
Query: 185 TNLAISYCF 193
+ I +
Sbjct: 166 QPIWIRHVL 174
>gi|86607742|ref|YP_476504.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556284|gb|ABD01241.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 249
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC L +C +C G
Sbjct: 18 VETCGTVDGPGI---RFVIF--TQGCPL-----------RCLYCHNPDCR-DPQAGQLVT 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
V+ L I+ TGGEPL+Q + + ++ G A++T+G +
Sbjct: 61 VESLIAEIQRYKNYLRGG--GVTATGGEPLMQPTFVAEIFRRCHELGLHTALDTSGYGQ 117
>gi|257867820|ref|ZP_05647473.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus EC30]
gi|257874148|ref|ZP_05653801.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus EC10]
gi|257801903|gb|EEV30806.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus EC30]
gi|257808312|gb|EEV37134.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus EC10]
Length = 251
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 30/179 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC GT R
Sbjct: 11 ESFGSVDGPGIR------FIVFMQGC-----------RMRCQFCHNPDTWKIGTGVERTT 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D L + ++ + G+K ++GGEPLLQ+D + L + G ++T G
Sbjct: 54 DDVLEEALKYREFWGQKG--GITVSGGEPLLQMDFLIDLFRKAKAEGVSTTLDTCGKPFT 111
Query: 125 PQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+ + + V+ D+K + K + Q N + + + E QP+
Sbjct: 112 REEPFFSKFQELMTVTDLLLFDIKHIDNKAHKELTTQSNDNILDMANYLSE--INQPVW 168
>gi|60683601|ref|YP_213745.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
fragilis NCTC 9343]
gi|253566526|ref|ZP_04843979.1| formate acetyltransferase activating enzyme [Bacteroides sp. 3_2_5]
gi|60495035|emb|CAH09853.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
fragilis NCTC 9343]
gi|251944698|gb|EES85173.1| formate acetyltransferase activating enzyme [Bacteroides sp. 3_2_5]
gi|301165116|emb|CBW24684.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
fragilis 638R]
Length = 261
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 65/214 (30%), Gaps = 37/214 (17%)
Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---- 54
MK +I E F G G +F GC L +C +C
Sbjct: 12 MKTGTIFSVEEFAIHDGPGIRT---TIF--LKGCPL-----------RCAWCHNPEGISP 55
Query: 55 -------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
G++ G + V++L +IE+ LTGGEPL Q D +
Sbjct: 56 QPQYMIKKGVKSICGYQITVEELVTMIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLR 115
Query: 108 NKRGFEIAVETNGT------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161
A+ET+G E D I K + + N++
Sbjct: 116 QLPDIHTAIETSGYANTHIFNEVTSLADLILFDIKHTDPEMHRKYTGVDNAIILENLALL 175
Query: 162 NYIGFDF-ERFSLQPMDGPFLEENTNLAISYCFQ 194
G DF R L P E N + +
Sbjct: 176 CNSGRDFIIRIPLIPGVNDTRE-NMSAILEKIKD 208
>gi|300868798|ref|ZP_07113406.1| Pyruvate formate-lyase activating enzyme [Oscillatoria sp. PCC
6506]
gi|300333208|emb|CBN58598.1| Pyruvate formate-lyase activating enzyme [Oscillatoria sp. PCC
6506]
Length = 247
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F SGC L + CR+ G + +
Sbjct: 15 ETCGTVDGPGIR------FIIFTSGCPLRCLYCSNPD---CRY---------LENGKKVS 56
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD+L + I++ G ++GGE L Q + + G A++T+G E
Sbjct: 57 VDELIEEIQKYKSYMNSSGGGVTISGGEALFQPHFVTEIFKRCRALGIHTALDTSGYCE 115
>gi|86148860|ref|ZP_01067118.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
gi|85833353|gb|EAQ51553.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
Length = 246
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 31/199 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW-DLHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + + + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIINEAKSYRHFMKASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQP 175
+ + S DLK + N ++ + + R+ + P
Sbjct: 113 HTEVVDEVLEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKIGKKTWIRYVIVP 172
Query: 176 MDGPFLEENTNLAISYCFQ 194
E+ +L +
Sbjct: 173 GYT-DTPEDAHLLGEFIKD 190
>gi|319935770|ref|ZP_08010199.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1]
gi|319809205|gb|EFW05654.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1]
Length = 254
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 24/127 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R F GC L +C+FC +Y
Sbjct: 12 ESFGSVDGPGV---RYIYF--LQGCPL-----------RCQFCHNP----DTWGSQKYQE 51
Query: 68 DQLADLIEEQWITGEK--EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+++ E ++GGEPL+Q+ + L + K ++T+G
Sbjct: 52 MTPEAALKQAMKYKSYWGEKGGITISGGEPLMQMEFILELFKLAKKENINTCIDTSGGCF 111
Query: 124 PPQGIDW 130
+
Sbjct: 112 TRSEPFF 118
>gi|269960975|ref|ZP_06175344.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
gi|269834194|gb|EEZ88284.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
Length = 246
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 24/168 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIIAEAKTYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
+ + DL + + +K Q + N DF R+
Sbjct: 113 HTDVIDEVLDA---TDLVMLDLKHMKDEIHQDFIGVSNRRVLDFARYL 157
>gi|217968079|ref|YP_002353585.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Dictyoglomus turgidum DSM 6724]
gi|217337178|gb|ACK42971.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Dictyoglomus turgidum DSM 6724]
Length = 228
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 36/185 (19%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G + GCN +C FC + Q KG +Y+ + + + I+ +
Sbjct: 16 GIPSFVIFTQGCNF-----------RCPFCHNPELISQRKKG-QYSEEFILEEIDRRRKL 63
Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
+ V+TGGEP LQ D+P + L KR + ++TNG+
Sbjct: 64 ----IKGVVITGGEPTLQEDLPSFLFKLKKRRLLVKLDTNGSNPKMLVEIIKSK------ 113
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
L V S Y L + +N ++ +N R
Sbjct: 114 --------LLDYVAMDFKTSIPKYHKA----IGLSERETSKYLKNIFESLRILKEN-NVR 160
Query: 200 LSVQT 204
++T
Sbjct: 161 FEIRT 165
>gi|33152126|ref|NP_873479.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus ducreyi
35000HP]
gi|33148348|gb|AAP95868.1| pyruvate formate-lyase activating enzyme [Haemophilus ducreyi
35000HP]
Length = 244
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G + +
Sbjct: 10 ETCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLEGGTKIS 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + + G +GGE +LQ++ +A G ++TNG +
Sbjct: 52 VETLMKEVVSYKHFMKATGGGVTASGGEAILQMEFVRDWFRACKAEGINTCLDTNGFVRH 111
>gi|53715662|ref|YP_101654.1| formate acetyltransferase activating enzyme [Bacteroides fragilis
YCH46]
gi|52218527|dbj|BAD51120.1| formate acetyltransferase activating enzyme [Bacteroides fragilis
YCH46]
Length = 250
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 65/214 (30%), Gaps = 37/214 (17%)
Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---- 54
MK +I E F G G +F GC L +C +C
Sbjct: 1 MKTGTIFSVEEFAIHDGPGIRT---TIF--LKGCPL-----------RCAWCHNPEGISP 44
Query: 55 -------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL 107
G++ G + V++L +IE+ LTGGEPL Q D +
Sbjct: 45 QPQYMIKKGVKSICGYQITVEELVTMIEKNRSIYTLNRGGVTLTGGEPLFQPDFVIELLR 104
Query: 108 NKRGFEIAVETNGT------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161
A+ET+G E D I K + + N++
Sbjct: 105 QLPDIHTAIETSGYANTHIFNEVTSLADLILFDIKHTDPEMHRKYTGVDNAIILENLALL 164
Query: 162 NYIGFDF-ERFSLQPMDGPFLEENTNLAISYCFQ 194
G DF R L P E N + +
Sbjct: 165 CNSGRDFIIRIPLIPGVNDTRE-NMSAILEKIKD 197
>gi|255528600|ref|ZP_05395368.1| pyruvate formate-lyase activating enzyme [Clostridium
carboxidivorans P7]
gi|296185843|ref|ZP_06854249.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
carboxidivorans P7]
gi|255507704|gb|EET84176.1| pyruvate formate-lyase activating enzyme [Clostridium
carboxidivorans P7]
gi|296049511|gb|EFG88939.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
carboxidivorans P7]
Length = 240
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 23/117 (19%)
Query: 10 FLT---LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
F + + G G VF GC S +C +C G
Sbjct: 9 FESMGLVDGPGIRT---VVFM--QGC-----------SLRCAYCHNPDTW-NFQGGTEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
++L I + G +GGEPL+Q D + ++ ++G ++T G
Sbjct: 52 PEELVKKIARFKPYFKNGG-GVTFSGGEPLMQPDFLIETLKLCKEQGIHTTIDTAGY 107
>gi|251791924|ref|YP_003006644.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
aphrophilus NJ8700]
gi|247533311|gb|ACS96557.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
aphrophilus NJ8700]
Length = 246
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 32/188 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEELMKEVVSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGISTCLDTNGFVR- 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
D + DL + +EL Q+ + N +F + LQ + N
Sbjct: 112 --HYDHVIDELMDVTDLVLLDLKELNDEVHQILIGVPNKRTLEFAK-YLQ-------KRN 161
Query: 185 TNLAISYC 192
+ + Y
Sbjct: 162 QRVWVRYV 169
>gi|153835535|ref|ZP_01988202.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
gi|148867892|gb|EDL67111.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
Length = 246
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 24/168 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIIAEAKTYRHFMNASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
+ + DL + + +K Q + N DF R+
Sbjct: 113 HTDVIDEVLDA---TDLVMLDLKHMKDEIHQEFIGVSNRRVLDFARYL 157
>gi|257876713|ref|ZP_05656366.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus EC20]
gi|257810879|gb|EEV39699.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus EC20]
Length = 251
Score = 58.8 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 30/179 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC GT R
Sbjct: 11 ESFGSVDGPGIR------FIVFMQGC-----------RMRCQFCHNPDTWKIGTGVERTT 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D L + ++ + G+K ++GGEPLLQ+D + L + G ++T G
Sbjct: 54 DDVLEEALKYREFWGQKG--GITVSGGEPLLQMDFLIDLFRKAKAEGVSTTLDTCGKPFT 111
Query: 125 PQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+ + + V+ D+K + K + Q N + + + E QP+
Sbjct: 112 REEPFFSKFQELMTVTDLLLFDIKHIDNKAHKELTTQSNDNILDMANYLSE--INQPVW 168
>gi|262274659|ref|ZP_06052470.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP
101886]
gi|262221222|gb|EEY72536.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP
101886]
Length = 246
Score = 58.4 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFMQGC-----------LMRCKYCHNRDTW-DLHDGREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIMKEVVTYRHFINASGGGVTASGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRK 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ + + DLK K + N ++ + +R
Sbjct: 113 HTDVIDEVLDATDLVMLDLKQLNDDIHKDLVGVSNHRTLDFARYLHQR 160
>gi|325570902|ref|ZP_08146551.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus ATCC 12755]
gi|325156306|gb|EGC68489.1| pyruvate formate-lyase activating enzyme [Enterococcus
casseliflavus ATCC 12755]
Length = 263
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 30/179 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC GT R
Sbjct: 23 ESFGSVDGPGIR------FIVFMQGC-----------RMRCQFCHNPDTWKIGTGVERTT 65
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D L + ++ + G+K ++GGEPLLQ+D + L + G ++T G
Sbjct: 66 DDVLEEALKYREFWGQKG--GITVSGGEPLLQMDFLIDLFRKAKAEGVSTTLDTCGKPFT 123
Query: 125 PQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+ + + V+ D+K + K + Q N + + + E QP+
Sbjct: 124 REEPFFSKFQELMTVTDLLLFDIKHIDNKAHKELTTQSNDNILDMANYLSE--INQPVW 180
>gi|294794866|ref|ZP_06760001.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 3_1_44]
gi|294454228|gb|EFG22602.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 3_1_44]
Length = 258
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-Y 65
E T+ G G VF GC +C +C + + +
Sbjct: 8 VETMGTVDGPGMRM---VVF--LQGCP-----------MRCAYCHNPDTWDETSDNAKFM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI- 122
V +L D E +TGGE L+Q+D + L +R ++T+G
Sbjct: 52 TVKELWDQYERNRQF--YTNGGITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSGICF 109
Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
+ +S + L IK K ++
Sbjct: 110 DPHQEVAYRKLLSVTSLVILDIKEIDPAKHLW 141
>gi|225028851|ref|ZP_03718043.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353]
gi|224953825|gb|EEG35034.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353]
Length = 250
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 23/118 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGR 64
E F ++ G G F F GC L +C+FC +
Sbjct: 16 ESFGSVDGPGVR------FIVFLQGCPL-----------RCQFCHNPDTWKMTEENGAIW 58
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
N ++L + + G ++GGEPLLQ+D + + ++G ++T G
Sbjct: 59 KNAEELLNQALRYRPYWKNGG-GITVSGGEPLLQIDFMLEFFKKAKEKGIHTVIDTAG 115
>gi|302669484|ref|YP_003829444.1| pyruvate formate-lyase activating enzyme PflA [Butyrivibrio
proteoclasticus B316]
gi|302393957|gb|ADL32862.1| pyruvate formate-lyase activating enzyme PflA [Butyrivibrio
proteoclasticus B316]
Length = 255
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GCNL +C++C + R
Sbjct: 19 VETFGSVDGPGIR------FIVFLKGCNL-----------RCKYCHNADTWNPQSDDMR- 60
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
++L D E E ++GGEPLLQ+D + + +RG ++T
Sbjct: 61 TPEELLDFAERYRGY-WGEDGGITVSGGEPLLQIDFLIEFFKMAKERGINTCIDT 114
>gi|219870425|ref|YP_002474800.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus parasuis
SH0165]
gi|219690629|gb|ACL31852.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus parasuis
SH0165]
Length = 246
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 53 VEDLMKEVVTYKHFMRATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRN 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ + V+ DLK + K N ++ + +R
Sbjct: 113 YSELVDEMLDVTDLVMLDLKQLNEEIHKDFIGVSNKRTLDFARYLHKR 160
>gi|269797319|ref|YP_003311219.1| pyruvate formate-lyase activating enzyme [Veillonella parvula DSM
2008]
gi|282849279|ref|ZP_06258664.1| pyruvate formate-lyase 1-activating enzyme [Veillonella parvula
ATCC 17745]
gi|269093948|gb|ACZ23939.1| pyruvate formate-lyase activating enzyme [Veillonella parvula DSM
2008]
gi|282580983|gb|EFB86381.1| pyruvate formate-lyase 1-activating enzyme [Veillonella parvula
ATCC 17745]
Length = 258
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-Y 65
E T+ G G VF GC +C +C + + +
Sbjct: 8 VETMGTVDGPGMRM---VVF--LQGCP-----------MRCAYCHNPDTWDETSDNAKFM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI- 122
V +L D E +TGGE L+Q+D + L +R ++T+G
Sbjct: 52 TVKELWDQYERNRQF--YTNGGITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSGICF 109
Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
+ +S + L IK K ++
Sbjct: 110 DPHQEVAYRKLLSVTSLVILDIKEIDPAKHLW 141
>gi|294793098|ref|ZP_06758244.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 6_1_27]
gi|294456043|gb|EFG24407.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. 6_1_27]
Length = 258
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-Y 65
E T+ G G VF GC +C +C + + +
Sbjct: 8 VETMGTVDGPGMRM---VVF--LQGCP-----------MRCAYCHNPDTWDETSDNAKFM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI- 122
V +L D E +TGGE L+Q+D + L +R ++T+G
Sbjct: 52 TVKELWDQYERNRQF--YTNGGITVTGGEALMQIDFVIELFTYFRERNVHTCLDTSGICF 109
Query: 123 -EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
+ +S + L IK K ++
Sbjct: 110 DPHQEVAYRKLLSITSLVILDIKEIDPAKHLW 141
>gi|226323711|ref|ZP_03799229.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758]
gi|225207895|gb|EEG90249.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758]
Length = 247
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 21/117 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGRY 65
E F ++ G G R +F GC L C+FC
Sbjct: 12 ESFGSVDGPGV---RFIIFV--QGCPLR-----------CQFCHNPDTWNMTDKNGATWR 55
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
+ D+L + G ++GGEPLLQ+D + L + +G ++T G
Sbjct: 56 SADELLAQALRYRTYWKNGG-GITVSGGEPLLQIDFLLDLFKKAKAKGIHTTIDTAG 111
>gi|90579339|ref|ZP_01235149.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
angustum S14]
gi|90440172|gb|EAS65353.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
angustum S14]
Length = 246
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHGGREAT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VDELMHEAKSYRHFMNSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q V N DF R+ Q
Sbjct: 113 HTDVVDEVLDA---TDLVMLDLKQMDDNIHQNLVGVSNKRVLDFARYLHQ 159
>gi|257457268|ref|ZP_05622439.1| pyruvate formate-lyase 1-activating enzyme [Treponema vincentii
ATCC 35580]
gi|257445190|gb|EEV20262.1| pyruvate formate-lyase 1-activating enzyme [Treponema vincentii
ATCC 35580]
Length = 245
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 37/117 (31%), Gaps = 19/117 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R VF GC L C CDT +
Sbjct: 8 ETFGTVDGPGL---RFVVF--LQGCPLRCQY--------CHNCDT---WERKDARIIDTA 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
Q + I +TGGEPL Q + L + + A +T+G
Sbjct: 52 AQTFERIRRYKHYYLF-AGGVTVTGGEPLGQPEYVKNLFELCKQESLHTAADTSGYF 107
>gi|212640612|ref|YP_002317132.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus
flavithermus WK1]
gi|212562092|gb|ACJ35147.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus
flavithermus WK1]
Length = 242
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G + +
Sbjct: 8 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKQMS 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
VD++ D + + G ++ GEPLLQ+D + L + + G ++++G
Sbjct: 51 VDEIIDDAQTYLPFMQASGGGITVSSGEPLLQIDFLIELFRRCKQLGIHTTIDSSGGC 108
>gi|149191035|ref|ZP_01869296.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1]
gi|148835169|gb|EDL52145.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1]
Length = 246
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 53/168 (31%), Gaps = 24/168 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G +
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW-DTHGGKEVS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VDELIAEAKSYRHFMNASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
+ + DL + + +K Q + N DF R+
Sbjct: 113 HTDVIDEVLDA---TDLVMLDIKHMKDEIHQDFIGVSNRRTLDFARYL 157
>gi|330446644|ref|ZP_08310296.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490835|dbj|GAA04793.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 246
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCQYCHNRDTW-DTHGGREAT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VDELMHEAKSYRHFMNSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q V N DF R+ Q
Sbjct: 113 HTDVIDEVLDA---TDLVMLDLKQMDDSIHQNLVGVPNKRVLDFARYLHQ 159
>gi|27365428|ref|NP_760956.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus
CMCP6]
gi|37680529|ref|NP_935138.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus
YJ016]
gi|320155814|ref|YP_004188193.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus
MO6-24/O]
gi|27361575|gb|AAO10483.1| pyruvate formate-lyase 1-activating enzyme [Vibrio vulnificus
CMCP6]
gi|37199277|dbj|BAC95109.1| pyruvate-formate lyase-activating enzyme [Vibrio vulnificus YJ016]
gi|319931126|gb|ADV85990.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus
MO6-24/O]
Length = 246
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFMQGC-----------LMRCMYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + L +A + G ++TNG I
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGITCSGGEAMLQPEFVRDLFRAAHAEGIHTCLDTNGYIRK 112
Query: 125 PQG 127
Sbjct: 113 HTD 115
>gi|167854968|ref|ZP_02477743.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus parasuis
29755]
gi|167853925|gb|EDS25164.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus parasuis
29755]
Length = 246
Score = 58.4 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 53 VEDLMKEVVTYKHFMRATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRN 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ + V+ DLK + K N ++ + +R
Sbjct: 113 YSELVDEMLDVTDLVMLDLKQLNEEIHKDFIGVSNKRTLDFARYLHKR 160
>gi|322832184|ref|YP_004212211.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602]
gi|321167385|gb|ADW73084.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602]
Length = 265
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G N
Sbjct: 30 ESCGTVDGPGIR------FIVFFQGC-----------LMRCMYCHNRDTW-DTHGGKEIN 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VDDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACQKEGINTCLDTNGFVRR 131
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + VS DLK + + N ++ + +R
Sbjct: 132 YDPVIDELLDVSDLVMLDLKQMNDDIHQNLVGVSNHRTLDFARYLAKR 179
>gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta
coccoides DSM 17374]
gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta
coccoides DSM 17374]
Length = 252
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 26/143 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--------IQGTKGGRY 65
G G R +F F GCNL +C +C + G +
Sbjct: 15 DGPGI---RSTIF--FKGCNL-----------RCHWCANPESISMKVRPELEESLGGRIW 58
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIE 123
++++ + + + ++ G L+GGEPLLQ D AL+ G +A+ET +
Sbjct: 59 KLEEVLHDVLKDKVFYDESGGGVTLSGGEPLLQADFACALCDALHAHGVAVAIETAACVP 118
Query: 124 PPQGIDWICVSPKAGCDLKIKGG 146
+ A DLK
Sbjct: 119 EQTFMKVFEKLDVAHIDLKHWND 141
>gi|317127502|ref|YP_004093784.1| pyruvate formate-lyase activating enzyme [Bacillus cellulosilyticus
DSM 2522]
gi|315472450|gb|ADU29053.1| pyruvate formate-lyase activating enzyme [Bacillus cellulosilyticus
DSM 2522]
Length = 241
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R +F GC +C++C KG V +L +
Sbjct: 14 VDGPGI---RYVIF--TQGC-----------LLRCQYCHNPDTW-DRNKGNEMTVAELIE 56
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
I++ + ++GGEPLLQ+D + L + K G ++++G
Sbjct: 57 DIKKYMPYMKFSKGGVTVSGGEPLLQMDFLIALFKECKKLGIHTTIDSSGGC 108
>gi|163802103|ref|ZP_02195999.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
gi|159174244|gb|EDP59052.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
Length = 246
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCKYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEEIIAEAKTYRHFMNASGGGITCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYVRK 112
Query: 125 PQG 127
Sbjct: 113 HTE 115
>gi|238019931|ref|ZP_04600357.1| hypothetical protein VEIDISOL_01807 [Veillonella dispar ATCC 17748]
gi|237863455|gb|EEP64745.1| hypothetical protein VEIDISOL_01807 [Veillonella dispar ATCC 17748]
Length = 258
Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 23/151 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YN 66
E T+ G G VF GC +C +C + + +
Sbjct: 9 ETMGTVDGPGMRM---VVF--LQGCP-----------MRCAYCHNPDTWNETSDDAKFMT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI-- 122
V++L D E +TGGE L+Q+D L +R ++T+G
Sbjct: 53 VEELWDQYERNRQF--YTNGGITVTGGEALMQIDFVTELFTYFRERNVHTCLDTSGICFD 110
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
+ +S + L IK K ++
Sbjct: 111 PHQEVAYRKLLSVTSLVILDIKEIDPDKHLW 141
>gi|326790187|ref|YP_004308008.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum
DSM 5427]
gi|326540951|gb|ADZ82810.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum
DSM 5427]
Length = 241
Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 29/171 (16%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GC L +C++C + G + ++L I + +
Sbjct: 23 VF--TQGCPL-----------RCKYCHNPDTW-KLQDGNEADTEELITDILKYKSFMKAS 68
Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
++GGEP LQ D L + G ++T+G ++ + + D+K
Sbjct: 69 NGGVTVSGGEPFLQADFVRDLFIKCKENGLHTTIDTSGYVDIENADPVLDYTDLVLLDIK 128
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
++ + P + + + + I Y
Sbjct: 129 SYNQN----IYKNLTGVPLDRTLALAKHL---------EKRGIPIWIRYVL 166
>gi|261207618|ref|ZP_05922303.1| formate acetyltransferase activating enzyme [Enterococcus faecium
TC 6]
gi|289565130|ref|ZP_06445583.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
D344SRF]
gi|294614807|ref|ZP_06694702.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1636]
gi|294617486|ref|ZP_06697117.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1679]
gi|260078001|gb|EEW65707.1| formate acetyltransferase activating enzyme [Enterococcus faecium
TC 6]
gi|289163137|gb|EFD10984.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
D344SRF]
gi|291592269|gb|EFF23883.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1636]
gi|291596226|gb|EFF27488.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1679]
Length = 253
Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC G G Y
Sbjct: 13 ETFGSVDGPGLR------FVVFMQGC-----------RMRCQFCHNPDTWNIG-GGKEYT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D+L D E +G ++GGEPLLQ+D + L + +R ++T G
Sbjct: 55 ADELLDKAERFRPYWGNKG-GITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109
>gi|302380412|ref|ZP_07268880.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
ACS-171-V-Col3]
gi|302311723|gb|EFK93736.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
ACS-171-V-Col3]
Length = 501
Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 32/163 (19%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L C +C G Y VD++
Sbjct: 18 VDGPGNRT----IFF-LQGCPLK-----------CVYCHNPD-SQNIHGGKEYTVDEIIK 60
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + ++GGEPLLQ L++ L + GF ++T+G
Sbjct: 61 IAKRYKPY-HGQEGGVTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG---------- 109
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
V K + + L F + I F ++ L
Sbjct: 110 --VGDKKYYSEILPYIDTMLLDFKAFDSKLYKQITFVEDKNFL 150
>gi|308186250|ref|YP_003930381.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
gi|308056760|gb|ADO08932.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
Length = 246
Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G +
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEALMADVLSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK +++ N ++ + ++
Sbjct: 113 YDPVIDELLDVTDLVMIDLKQMNDDVHQILVGVSNHRTLDFARYLQKK 160
>gi|169342629|ref|ZP_02863673.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C
str. JGS1495]
gi|169299271|gb|EDS81340.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C
str. JGS1495]
Length = 235
Score = 58.0 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 21/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F GC +C FC + KG Y ++L
Sbjct: 15 VDGPGIR------FVVFMQGC-----------GIRCAFCHNPDTWCK-DKGTEYTPEELV 56
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ I G +GGEPLLQ + ++ K G ++T G
Sbjct: 57 NKITRFKTYFNASGGGVTFSGGEPLLQPEFLLECLKLCKKEGIHTTLDTAG 107
>gi|304397064|ref|ZP_07378943.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
gi|304355213|gb|EFM19581.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
Length = 246
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G +
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEALMADVLSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK +++ N ++ + ++
Sbjct: 113 YDPVIDELLDVTDLVMLDLKQMNDDVHQILVGVSNHRTLDFARYLQKK 160
>gi|218961545|ref|YP_001741320.1| putative anaerobic ribonucleotide reductase activating enzyme
(NrdG) [Candidatus Cloacamonas acidaminovorans]
gi|167730202|emb|CAO81114.1| putative anaerobic ribonucleotide reductase activating enzyme
(NrdG) [Candidatus Cloacamonas acidaminovorans]
Length = 237
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 19/136 (13%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCN +C +C + RY+ + + K+
Sbjct: 22 VF--TQGCNF-----------RCPYCHNP----ELVDPQRYSPLLETEKVLRFLYRRHKK 64
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
V+TGGEP L + +P ++ ++I ++TNG+ + + + I
Sbjct: 65 LSAVVVTGGEPTLQEDLIPFLKLTKAMRYKIKLDTNGSRPEVL-QEIVNQGLVDYFAMDI 123
Query: 144 KGGQELKLVFPQVNVS 159
K +L V + ++
Sbjct: 124 KAPLKLYKVITRADLE 139
>gi|218709044|ref|YP_002416665.1| pyruvate formate lyase-activating enzyme 1 [Vibrio splendidus
LGP32]
gi|218322063|emb|CAV18128.1| Pyruvate formate-lyase 1-activating enzyme [Vibrio splendidus
LGP32]
Length = 246
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 31/199 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C + G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW-ELHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + + + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIINEAKSYRHFMKASGGGITCSGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQP 175
+ + S DLK + N ++ + + R+ + P
Sbjct: 113 HTEVVDEVLEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKIGKKTWIRYVIVP 172
Query: 176 MDGPFLEENTNLAISYCFQ 194
E+ +L +
Sbjct: 173 GYT-DTPEDAHLLGEFIKD 190
>gi|261868599|ref|YP_003256521.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413931|gb|ACX83302.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 246
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 25/175 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRH 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+ I V+ DLK + + + N + + +R QP+
Sbjct: 113 YDHVIDELIDVTDLVLLDLKELNDKVHQNLIGVPNKRTLEFAKYLQKRN--QPVW 165
>gi|323492522|ref|ZP_08097670.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
20546]
gi|323313309|gb|EGA66425.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
20546]
Length = 246
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW-DTHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIINEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRK 112
Query: 125 PQG 127
Sbjct: 113 HTE 115
>gi|258621387|ref|ZP_05716421.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
gi|258626814|ref|ZP_05721621.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
gi|262171168|ref|ZP_06038846.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
gi|258580861|gb|EEW05803.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
gi|258586775|gb|EEW11490.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
gi|261892244|gb|EEY38230.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
Length = 246
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LFRCKYCHNRDTW-DTHTGREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRDFFRAAKAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q + N DF R+ Q
Sbjct: 113 FTPVIDEVL---EVTDLVMLDIKQMNDEIHQDLIGVSNKRTLDFARYLHQ 159
>gi|291531569|emb|CBK97154.1| Pyruvate-formate lyase-activating enzyme [Eubacterium siraeum 70/3]
Length = 237
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 22/157 (14%)
Query: 12 TLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
TL G G F GC L +C +C + G V +
Sbjct: 13 TLDGPGVR------FVLFLQGCPL-----------RCGYCHNPETR-DASGGKTATVKDI 54
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ + K G ++GGEPL+Q L + ++G ++T+G I
Sbjct: 55 MEKVLRCRNYFGKNG-GITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVT 113
Query: 129 DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
+ + V+ D+K+ ++ + +P ++
Sbjct: 114 ELLKVTDLCMLDIKMTNDEDYRKYIGCSLDAPLKFLD 150
>gi|313158374|gb|EFR57773.1| pyruvate formate-lyase 1-activating enzyme [Alistipes sp. HGB5]
Length = 241
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 28/131 (21%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGI 57
+ + E T G G R+ VF GCN +C +C DT I
Sbjct: 1 MIKVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----I 40
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
G + D++ + +Q + G +GGEP Q PL++ L + G +
Sbjct: 41 DACGGTPTSPDEILRMAVDQKPFYGRRG-GVTFSGGEPTFQAAALAPLVRRLREAGIHVC 99
Query: 116 VETNGTIEPPQ 126
++TNG+I P
Sbjct: 100 IDTNGSIWNPA 110
>gi|308050261|ref|YP_003913827.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
9799]
gi|307632451|gb|ADN76753.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
9799]
Length = 246
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 58/194 (29%), Gaps = 30/194 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G
Sbjct: 11 ETCGTVDGPGIR------FIAFLQGC-----------LMRCQYCHNRDTW-DLEGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V QL + + E G +GGE +LQ+D A G ++TNG I
Sbjct: 53 VPQLMEQLVSYRHFFEASGGGVTASGGEAVLQMDFVKEWFTACKAEGIHTCLDTNGLIRK 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQP 175
P + + V+ D+K + + N P + + R+ + P
Sbjct: 113 YTPVVDEMLDVTDLVMLDIKQMDDSIHQNLVGVSNKRPLEFAQHLAKRGQKTWIRYVIVP 172
Query: 176 MDGPFLEENTNLAI 189
LA
Sbjct: 173 GFTDDDASAEKLAE 186
>gi|227551205|ref|ZP_03981254.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
faecium TX1330]
gi|257896172|ref|ZP_05675825.1| formate acetyltransferase activating enzyme [Enterococcus faecium
Com12]
gi|293377172|ref|ZP_06623380.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
PC4.1]
gi|227179673|gb|EEI60645.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
faecium TX1330]
gi|257832737|gb|EEV59158.1| formate acetyltransferase activating enzyme [Enterococcus faecium
Com12]
gi|292644192|gb|EFF62294.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
PC4.1]
Length = 253
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC G G Y+
Sbjct: 13 ETFGSVDGPGLR------FVVFMQGC-----------RMRCQFCHNPDTWNIG-GGKEYS 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D+L D E + ++GGEPLLQ+D + L + +R ++T G
Sbjct: 55 ADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109
>gi|295397845|ref|ZP_06807908.1| pyruvate formate-lyase activating enzyme [Aerococcus viridans ATCC
11563]
gi|294973890|gb|EFG49654.1| pyruvate formate-lyase activating enzyme [Aerococcus viridans ATCC
11563]
Length = 281
Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC L +C+FC G +Y
Sbjct: 41 ESFGSVDGPGIR------FISFMQGCRL-----------RCQFCHNPDTW-NMRGGTQYT 82
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+L D + G ++GGEPLLQ+ + + G ++T G
Sbjct: 83 PQELFDEAIQYRSFWGNSG-GVTVSGGEPLLQIEFLIEYFKICKAHGVHTTIDTCG 137
>gi|303234602|ref|ZP_07321236.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
BVS033A4]
gi|302494265|gb|EFL54037.1| pyruvate formate-lyase 1-activating enzyme [Finegoldia magna
BVS033A4]
Length = 501
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L C +C G Y VD++
Sbjct: 18 VDGPGNRT----IFF-LQGCPLK-----------CVYCHNPD-SQNIHGGKEYTVDEIIK 60
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + ++GGEPLLQ L++ L + GF ++T+G + +
Sbjct: 61 IAKRYKPY-HGQEGGVTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSGVGDKKYYSEI 119
Query: 131 I 131
+
Sbjct: 120 L 120
>gi|149189655|ref|ZP_01867937.1| pyruvate formate lyase II activase [Vibrio shilonii AK1]
gi|148836467|gb|EDL53422.1| pyruvate formate lyase II activase [Vibrio shilonii AK1]
Length = 303
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 26/132 (19%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFCDTDFVGIQ 58
+L GEG VF F GC L + R A+C CD
Sbjct: 41 YSLNDGEGIRT---VVF--FKGCPLKCPWCANPESRSIDLVNIRREAKCLHCDVCEQDAD 95
Query: 59 GTKGGRY-------NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNK 109
G + +D+L I + + + G L+GGE L+ + L++ L +
Sbjct: 96 ECPSGAFEQVGYDVTIDELLKEIAKDDVFYQTSGGGVTLSGGEILVHGRFCIELLKQLRR 155
Query: 110 RGFEIAVETNGT 121
G++ A+ET+G
Sbjct: 156 LGYKTAIETSGH 167
>gi|30018698|ref|NP_830329.1| pyruvate formate-lyase activating enzyme [Bacillus cereus ATCC
14579]
gi|229125942|ref|ZP_04254967.1| hypothetical protein bcere0015_4060 [Bacillus cereus BDRD-Cer4]
gi|29894239|gb|AAP07530.1| Pyruvate formate-lyase activating enzyme [Bacillus cereus ATCC
14579]
gi|228657600|gb|EEL13413.1| hypothetical protein bcere0015_4060 [Bacillus cereus BDRD-Cer4]
Length = 243
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ + + L ++ + LQ ++N
Sbjct: 112 EE------PEFRNKLDILMDYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|69248399|ref|ZP_00604735.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
DO]
gi|257878034|ref|ZP_05657687.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,230,933]
gi|257881180|ref|ZP_05660833.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,502]
gi|257884843|ref|ZP_05664496.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,501]
gi|257889767|ref|ZP_05669420.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,410]
gi|257892296|ref|ZP_05671949.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,408]
gi|258616472|ref|ZP_05714242.1| pyruvate formate-lyase activating enzyme [Enterococcus faecium DO]
gi|260559084|ref|ZP_05831270.1| formate acetyltransferase activating enzyme [Enterococcus faecium
C68]
gi|293563436|ref|ZP_06677885.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1162]
gi|293568151|ref|ZP_06679487.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1071]
gi|294622318|ref|ZP_06701361.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
U0317]
gi|314938046|ref|ZP_07845356.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133a04]
gi|314941968|ref|ZP_07848829.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133C]
gi|314948779|ref|ZP_07852151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0082]
gi|314951797|ref|ZP_07854836.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133A]
gi|314991796|ref|ZP_07857254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133B]
gi|314995837|ref|ZP_07860924.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133a01]
gi|68194435|gb|EAN08938.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
DO]
gi|257812262|gb|EEV41020.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,230,933]
gi|257816838|gb|EEV44166.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,502]
gi|257820681|gb|EEV47829.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,501]
gi|257826127|gb|EEV52753.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,410]
gi|257828675|gb|EEV55282.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,231,408]
gi|260074841|gb|EEW63157.1| formate acetyltransferase activating enzyme [Enterococcus faecium
C68]
gi|291589141|gb|EFF20953.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1071]
gi|291598210|gb|EFF29308.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
U0317]
gi|291604697|gb|EFF34182.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1162]
gi|313589941|gb|EFR68786.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133a01]
gi|313593607|gb|EFR72452.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133B]
gi|313596076|gb|EFR74921.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133A]
gi|313599220|gb|EFR78065.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133C]
gi|313642621|gb|EFS07201.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0133a04]
gi|313644845|gb|EFS09425.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
TX0082]
Length = 253
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC G G Y
Sbjct: 13 ETFGSVDGPGLR------FVVFMQGC-----------RMRCQFCHNPDTWNIG-GGKEYT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D+L D E + ++GGEPLLQ+D + L + +R ++T G
Sbjct: 55 ADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109
>gi|167748358|ref|ZP_02420485.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662]
gi|317472105|ref|ZP_07931437.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp.
3_2_56FAA]
gi|167652350|gb|EDR96479.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662]
gi|316900509|gb|EFV22491.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp.
3_2_56FAA]
Length = 241
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 20/113 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R VF F GC L +C+FC + G + L
Sbjct: 15 VDGPGI---RSVVF--FQGCAL-----------RCKFCHNPDTW-EFQGGEEMTPEALVK 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
I + + +GGEPL+Q + ++ + G ++T G +
Sbjct: 58 RISRFKPYFK-QNGGVTFSGGEPLMQPEFLLKTLKLCKQEGIHTCIDTAGFGQ 109
>gi|229042347|ref|ZP_04190097.1| hypothetical protein bcere0027_4160 [Bacillus cereus AH676]
gi|229108114|ref|ZP_04237739.1| hypothetical protein bcere0018_4060 [Bacillus cereus Rock1-15]
gi|228675389|gb|EEL30608.1| hypothetical protein bcere0018_4060 [Bacillus cereus Rock1-15]
gi|228727006|gb|EEL78213.1| hypothetical protein bcere0027_4160 [Bacillus cereus AH676]
Length = 243
Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 40/196 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + +L ++ ++ + D ++ + G E
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKHR--KLTGKSNEHI 153
Query: 185 TNLAISYC--FQNPKW 198
A Y P W
Sbjct: 154 LQFA-RYLSDKNKPIW 168
>gi|84393746|ref|ZP_00992494.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
12B01]
gi|84375608|gb|EAP92507.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
12B01]
Length = 246
Score = 57.6 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 31/199 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW-DLHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + + + G +GGE +LQ + QA G ++TNG I
Sbjct: 53 VEEIINEAKSYRHFMKASGGGITCSGGEAMLQPEFVRDFFQAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQP 175
+ + S DLK + N ++ + + R+ + P
Sbjct: 113 HTEVVDEVLEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKIGKKTWIRYVIVP 172
Query: 176 MDGPFLEENTNLAISYCFQ 194
E+ +L +
Sbjct: 173 GYT-DTPEDAHLLGEFIKD 190
>gi|293556778|ref|ZP_06675341.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1039]
gi|291601110|gb|EFF31399.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E1039]
Length = 253
Score = 57.6 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC G G Y
Sbjct: 13 ETFGSVDGPGLR------FVVFMQGC-----------RMRCQFCHNPDTWNIG-GGKEYT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D+L D E + ++GGEPLLQ+D + L + +R ++T G
Sbjct: 55 ADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKERKMHTTLDTCG 109
>gi|260772500|ref|ZP_05881416.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP
69.14]
gi|260611639|gb|EEX36842.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP
69.14]
Length = 246
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 24/168 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LFRCKYCHNRDTW-DTHSGKEVS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + + +A G ++TNG I
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGITCSGGESMLQPEFVRDVFRAAKAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
+ + DL + +++K Q + N DF R+
Sbjct: 113 YTPVIDEVLDV---TDLVLLDIKQIKDDVHQDLIGVSNKRTLDFARYL 157
>gi|257887678|ref|ZP_05667331.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,141,733]
gi|257823732|gb|EEV50664.1| formate acetyltransferase activating enzyme [Enterococcus faecium
1,141,733]
Length = 253
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC G G Y+
Sbjct: 13 ETFGSVDGPGLR------FVVFMQGC-----------RMRCQFCHNPDTWNIG-GGKEYS 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D+L D E + ++GGEPLLQ+D + L + +R ++T G
Sbjct: 55 ADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKEREMHTTLDTCG 109
>gi|310659693|ref|YP_003937414.1| pyruvate formate lyase activating enzyme 1 [Clostridium sticklandii
DSM 519]
gi|308826471|emb|CBH22509.1| pyruvate formate lyase activating enzyme 1 [Clostridium
sticklandii]
Length = 252
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 19/121 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L +C +C ++ + +++
Sbjct: 14 VDGPGIRT----IFF-LQGCPL-----------RCAYCHNPDSQNMFSQ-KHISPEEVLK 56
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + G +GGEPLLQ V ++ L + GF A++T+G + D
Sbjct: 57 TASKYKAYYNRTGGGVTFSGGEPLLQGEFLVETLKLLKENGFNTAIDTSGYGDSKYYDDI 116
Query: 131 I 131
+
Sbjct: 117 L 117
>gi|189461245|ref|ZP_03010030.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136]
gi|189432062|gb|EDV01047.1| hypothetical protein BACCOP_01895 [Bacteroides coprocola DSM 17136]
Length = 242
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 26/179 (14%)
Query: 3 LYSIKEIFLTL---QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + + +L G G R+ VF GCN +C +C
Sbjct: 1 MIRVH-SYESLGTYDGPGI---RLVVF--LQGCNF-----------RCLYCANPDTIDAK 43
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
+ + + + + Q K+G +GGEP Q +PL + L + G I V+
Sbjct: 44 GESKETSPEDILKMAVSQKPFFGKKG-GITFSGGEPTFQAKALIPLFRMLKEEGIHICVD 102
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSL 173
TNG I + ++ D+K + K + + N + ++ + + F L
Sbjct: 103 TNGGIWNEDVKELFSLADLVLLDVKEFNNERHKTLTSRSNEQTLRTAAWLEENGKPFWL 161
>gi|262404211|ref|ZP_06080766.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586]
gi|262349243|gb|EEY98381.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586]
Length = 246
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 24/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LFRCKYCHNRDTW-DTHTGREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + L ++ G ++TNG I
Sbjct: 53 VEEIIKEAKSYRHFMNASGGGITCSGGEAMLQPEFVRDLFRSAKAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ + DL + +++ Q + N DF R+ Q
Sbjct: 113 FTPVIDEVL---EVTDLVMLDIKQMDDEIHQDLIGVSNKRTLDFARYLHQ 159
>gi|206968116|ref|ZP_03229072.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH1134]
gi|228950999|ref|ZP_04113120.1| hypothetical protein bthur0006_4300 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229068195|ref|ZP_04201502.1| hypothetical protein bcere0025_4110 [Bacillus cereus F65185]
gi|229177033|ref|ZP_04304428.1| hypothetical protein bcere0005_4130 [Bacillus cereus 172560W]
gi|229188712|ref|ZP_04315751.1| hypothetical protein bcere0002_4070 [Bacillus cereus ATCC 10876]
gi|206737036|gb|EDZ54183.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH1134]
gi|228594901|gb|EEK52681.1| hypothetical protein bcere0002_4070 [Bacillus cereus ATCC 10876]
gi|228606508|gb|EEK63934.1| hypothetical protein bcere0005_4130 [Bacillus cereus 172560W]
gi|228715009|gb|EEL66877.1| hypothetical protein bcere0025_4110 [Bacillus cereus F65185]
gi|228808726|gb|EEM55224.1| hypothetical protein bthur0006_4300 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 243
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|260768897|ref|ZP_05877831.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP
102972]
gi|260616927|gb|EEX42112.1| pyruvate formate-lyase activating enzyme [Vibrio furnissii CIP
102972]
gi|315180593|gb|ADT87507.1| pyruvate formate lyase-activating enzyme 1 [Vibrio furnissii NCTC
11218]
Length = 246
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 25/172 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FIIFLQGC-----------LFRCKYCHNRDTW-DTHTGKEVS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEEIIAEAKSYRHFMNASGGGVTCSGGESMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
+ + DL + ++++ Q + N DF R LQ M
Sbjct: 113 YTPVIDEVLDV---TDLVMLDIKQMQDEIHQDLIGVSNKRTLDFAR-YLQKM 160
>gi|225163578|ref|ZP_03725887.1| Pyruvate-formate lyase-activating enzyme-like protein [Opitutaceae
bacterium TAV2]
gi|224801813|gb|EEG20100.1| Pyruvate-formate lyase-activating enzyme-like protein [Opitutaceae
bacterium TAV2]
Length = 220
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
AV GCN +C +C ++ I ++ T
Sbjct: 42 PAV-VFTQGCN-----------WRCPWCH----NTALVYPEQFTTPIPEADILQKLATRR 85
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ V++GGEP L D+P I+ + GF I ++TNG+
Sbjct: 86 GKLDGVVISGGEPTLHPDLPDFIRRVRALGFLIKLDTNGSRP 127
>gi|229028300|ref|ZP_04184435.1| hypothetical protein bcere0028_4260 [Bacillus cereus AH1271]
gi|228733024|gb|EEL83871.1| hypothetical protein bcere0028_4260 [Bacillus cereus AH1271]
Length = 243
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|218233688|ref|YP_002365291.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus B4264]
gi|228956924|ref|ZP_04118705.1| hypothetical protein bthur0005_4620 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229143233|ref|ZP_04271665.1| hypothetical protein bcere0012_4060 [Bacillus cereus BDRD-ST24]
gi|229148845|ref|ZP_04277093.1| hypothetical protein bcere0011_4160 [Bacillus cereus m1550]
gi|296501273|ref|YP_003662973.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
BMB171]
gi|218161645|gb|ACK61637.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus B4264]
gi|228634639|gb|EEK91220.1| hypothetical protein bcere0011_4160 [Bacillus cereus m1550]
gi|228640314|gb|EEK96712.1| hypothetical protein bcere0012_4060 [Bacillus cereus BDRD-ST24]
gi|228802767|gb|EEM49603.1| hypothetical protein bthur0005_4620 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|296322325|gb|ADH05253.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
BMB171]
Length = 243
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKAAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|86605193|ref|YP_473956.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
JA-3-3Ab]
gi|86553735|gb|ABC98693.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
JA-3-3Ab]
Length = 250
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC L +C +C G
Sbjct: 18 VETCGTVDGPGI---RFVIF--LQGCPL-----------RCLYCHNPDCR-DPNAGQVVT 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD L I+ K G +GGEPL+Q + + + ++ A++T+G
Sbjct: 61 VDSLMAEIQRCRNYYLKGG-GVTASGGEPLMQPNFVAEIFRRCHELDLHTALDTSGYAP 118
>gi|228937744|ref|ZP_04100377.1| hypothetical protein bthur0008_4220 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970623|ref|ZP_04131271.1| hypothetical protein bthur0003_4140 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977202|ref|ZP_04137601.1| hypothetical protein bthur0002_4190 [Bacillus thuringiensis Bt407]
gi|228782511|gb|EEM30690.1| hypothetical protein bthur0002_4190 [Bacillus thuringiensis Bt407]
gi|228789089|gb|EEM37020.1| hypothetical protein bthur0003_4140 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821896|gb|EEM67891.1| hypothetical protein bthur0008_4220 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326938229|gb|AEA14125.1| pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 243
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|293391864|ref|ZP_06636198.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952398|gb|EFE02517.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 246
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 25/175 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNATGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRH 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+ I V+ DLK + + + N + + +R QP+
Sbjct: 113 YDHVIDELIDVTDLVLLDLKELNDKVHQNLIGVPNKRTLEFAKYLRKRN--QPVW 165
>gi|257898809|ref|ZP_05678462.1| formate acetyltransferase activating enzyme [Enterococcus faecium
Com15]
gi|293570288|ref|ZP_06681357.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E980]
gi|257836721|gb|EEV61795.1| formate acetyltransferase activating enzyme [Enterococcus faecium
Com15]
gi|291609695|gb|EFF38956.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
E980]
Length = 253
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C+FC G G Y+
Sbjct: 13 ETFGSVDGPGLR------FVVFMQGC-----------RMRCQFCHNPDTWNIG-GGKEYS 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D+L D E + ++GGEPLLQ+D + L + +R ++T G
Sbjct: 55 ADELLDKAERFRPY-WGDKGGITVSGGEPLLQIDFLIELFKKAKEREMHTTLDTCG 109
>gi|52424458|ref|YP_087595.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia
succiniciproducens MBEL55E]
gi|52306510|gb|AAU37010.1| PflA protein [Mannheimia succiniciproducens MBEL55E]
Length = 246
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ETCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLHGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A +K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHKEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 HDH 115
>gi|228919371|ref|ZP_04082740.1| hypothetical protein bthur0011_3990 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840307|gb|EEM85579.1| hypothetical protein bthur0011_3990 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 243
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|229159596|ref|ZP_04287610.1| hypothetical protein bcere0009_4020 [Bacillus cereus R309803]
gi|228623898|gb|EEK80710.1| hypothetical protein bcere0009_4020 [Bacillus cereus R309803]
Length = 243
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|315656244|ref|ZP_07909135.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|315493246|gb|EFU82846.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 302
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ +F +GC L +C +C Q +G L D
Sbjct: 75 VDGPGT---RLTIF--LAGCPL-----------RCVYCHNPDTW-QMREGTPILAKDLLD 117
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
I + G +GGEP++Q L++ G ++T+G
Sbjct: 118 KIVRYKAVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSG 167
>gi|315655831|ref|ZP_07908729.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii ATCC
51333]
gi|315489895|gb|EFU79522.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii ATCC
51333]
Length = 302
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ +F +GC L +C +C Q +G L D
Sbjct: 75 VDGPGT---RLTIF--LAGCPL-----------RCVYCHNPDTW-QMREGTPILAKDLLD 117
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
I + G +GGEP++Q L++ G ++T+G
Sbjct: 118 KIVRYKAVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSG 167
>gi|298345424|ref|YP_003718111.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
curtisii ATCC 43063]
gi|304390979|ref|ZP_07372931.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|298235485|gb|ADI66617.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
curtisii ATCC 43063]
gi|304325862|gb|EFL93108.1| pyruvate formate-lyase activating enzyme [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 302
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ +F +GC L +C +C Q +G L D
Sbjct: 75 VDGPGT---RLTIF--LAGCPL-----------RCVYCHNPDTW-QMREGTPILAKDLLD 117
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
I + G +GGEP++Q L++ G ++T+G
Sbjct: 118 KIVRYKAVYKATGGGVTFSGGEPMMQPRFLKKLLRDTKAEGIHTNIDTSG 167
>gi|29376171|ref|NP_815325.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
V583]
gi|227518800|ref|ZP_03948849.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
TX0104]
gi|227553414|ref|ZP_03983463.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
HH22]
gi|229545774|ref|ZP_04434499.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
TX1322]
gi|229549964|ref|ZP_04438689.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
ATCC 29200]
gi|255972746|ref|ZP_05423332.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T1]
gi|255975798|ref|ZP_05426384.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T2]
gi|256619111|ref|ZP_05475957.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
ATCC 4200]
gi|256762547|ref|ZP_05503127.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T3]
gi|256853173|ref|ZP_05558543.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8]
gi|256959027|ref|ZP_05563198.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
DS5]
gi|256961880|ref|ZP_05566051.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
Merz96]
gi|256965078|ref|ZP_05569249.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
HIP11704]
gi|257079058|ref|ZP_05573419.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
JH1]
gi|257082503|ref|ZP_05576864.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
E1Sol]
gi|257085135|ref|ZP_05579496.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
Fly1]
gi|257086696|ref|ZP_05581057.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
D6]
gi|257089932|ref|ZP_05584293.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
CH188]
gi|257416141|ref|ZP_05593135.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
AR01/DG]
gi|257419343|ref|ZP_05596337.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T11]
gi|257422563|ref|ZP_05599553.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
X98]
gi|293382946|ref|ZP_06628864.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
R712]
gi|293389565|ref|ZP_06634022.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
S613]
gi|294781698|ref|ZP_06747033.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
PC1.1]
gi|300860342|ref|ZP_07106429.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TUSoD Ef11]
gi|307270971|ref|ZP_07552254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX4248]
gi|307273177|ref|ZP_07554423.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0855]
gi|307274911|ref|ZP_07556074.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX2134]
gi|307278019|ref|ZP_07559103.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0860]
gi|307289153|ref|ZP_07569109.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0109]
gi|307291949|ref|ZP_07571818.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0411]
gi|312899462|ref|ZP_07758792.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0470]
gi|312903355|ref|ZP_07762535.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0635]
gi|312907583|ref|ZP_07766574.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
DAPTO 512]
gi|312910201|ref|ZP_07769048.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
DAPTO 516]
gi|312951545|ref|ZP_07770441.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0102]
gi|29343634|gb|AAO81395.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
V583]
gi|227073795|gb|EEI11758.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
TX0104]
gi|227177465|gb|EEI58437.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
HH22]
gi|229304877|gb|EEN70873.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
ATCC 29200]
gi|229309086|gb|EEN75073.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
TX1322]
gi|255963764|gb|EET96240.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T1]
gi|255968670|gb|EET99292.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T2]
gi|256598638|gb|EEU17814.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
ATCC 4200]
gi|256683798|gb|EEU23493.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T3]
gi|256711632|gb|EEU26670.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8]
gi|256949523|gb|EEU66155.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
DS5]
gi|256952376|gb|EEU69008.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
Merz96]
gi|256955574|gb|EEU72206.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
HIP11704]
gi|256987088|gb|EEU74390.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
JH1]
gi|256990533|gb|EEU77835.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
E1Sol]
gi|256993165|gb|EEU80467.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
Fly1]
gi|256994726|gb|EEU82028.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
D6]
gi|256998744|gb|EEU85264.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
CH188]
gi|257157969|gb|EEU87929.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
ARO1/DG]
gi|257161171|gb|EEU91131.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
T11]
gi|257164387|gb|EEU94347.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
X98]
gi|291079611|gb|EFE16975.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
R712]
gi|291081182|gb|EFE18145.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
S613]
gi|294451250|gb|EFG19717.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
PC1.1]
gi|300849381|gb|EFK77131.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TUSoD Ef11]
gi|306496947|gb|EFM66495.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0411]
gi|306499862|gb|EFM69223.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0109]
gi|306505416|gb|EFM74602.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0860]
gi|306508359|gb|EFM77466.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX2134]
gi|306510162|gb|EFM79186.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0855]
gi|306512469|gb|EFM81118.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX4248]
gi|310626611|gb|EFQ09894.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
DAPTO 512]
gi|310630511|gb|EFQ13794.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0102]
gi|310633231|gb|EFQ16514.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0635]
gi|311289474|gb|EFQ68030.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
DAPTO 516]
gi|311293332|gb|EFQ71888.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0470]
gi|315027219|gb|EFT39151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX2137]
gi|315029337|gb|EFT41269.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX4000]
gi|315034016|gb|EFT45948.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0017]
gi|315037025|gb|EFT48957.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0027]
gi|315145095|gb|EFT89111.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX2141]
gi|315147312|gb|EFT91328.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX4244]
gi|315150489|gb|EFT94505.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0012]
gi|315152432|gb|EFT96448.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0031]
gi|315155705|gb|EFT99721.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0043]
gi|315158124|gb|EFU02141.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0312]
gi|315160389|gb|EFU04406.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0645]
gi|315164062|gb|EFU08079.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX1302]
gi|315169778|gb|EFU13795.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX1342]
gi|315172257|gb|EFU16274.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX1346]
gi|315575819|gb|EFU88010.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0309B]
gi|315577659|gb|EFU89850.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0630]
gi|315580471|gb|EFU92662.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX0309A]
gi|323480777|gb|ADX80216.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
62]
gi|327535181|gb|AEA94015.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
OG1RF]
gi|329571652|gb|EGG53333.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX1467]
Length = 254
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 21/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C+FC G+ G
Sbjct: 13 ENFGTVDGPGVR------FIVFTQGC-----------RMRCQFCHNPDTWKIGSGGRVVT 55
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D++ + E ++GGEPLLQ+D + L + +G ++T G
Sbjct: 56 TDEVLEEALRFRSY-WGEKGGITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCG 110
>gi|209695413|ref|YP_002263342.1| pyruvate formate lyase-activating enzyme 1 [Aliivibrio salmonicida
LFI1238]
gi|208009365|emb|CAQ79638.1| pyruvate formate-lyase 1 activating enzyme [Aliivibrio salmonicida
LFI1238]
Length = 245
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 25/176 (14%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M + I E T+ G G F GC +C +C
Sbjct: 1 MSVGRIHSFESCGTVDGPGIR------FIIFLQGC-----------LMRCMYCHNRDTW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
+G +V +L + + + G +GGE +LQ + QA G
Sbjct: 43 DTHEGKEVSVTELIEEAKSYRHFMKASGGGITCSGGEAMLQPEFVRDFFQAAQAEGMHTC 102
Query: 116 VETNGTIEPPQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
++TNG I + + S D+K + N ++ + +
Sbjct: 103 LDTNGYIRKHTDVVDEVLAASDLVMLDIKHMKDEIHHDFIGVSNRRTLDFARYLHK 158
>gi|315168988|gb|EFU13005.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
TX1341]
Length = 254
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 21/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C+FC G+ G
Sbjct: 13 ENFGTVDGPGVR------FIVFTQGC-----------RMRCQFCHNPDTWKIGSGGRVVT 55
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
D++ + E ++GGEPLLQ+D + L + +G ++T G
Sbjct: 56 TDEVLEEALRFRSY-WGEKGGITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCG 110
>gi|294636920|ref|ZP_06715247.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
23685]
gi|291089873|gb|EFE22434.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
23685]
Length = 246
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 51/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKDTVTYRHFMNASGGGVTASGGEAMLQAEFVRDWFRACKAEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK K + N + + +R
Sbjct: 113 YDPVVDELLDVTDLVMLDLKQMNDDIHKNLVGVSNHRTLEFCRYLAKR 160
>gi|228906251|ref|ZP_04070138.1| hypothetical protein bthur0013_4350 [Bacillus thuringiensis IBL
200]
gi|228853407|gb|EEM98177.1| hypothetical protein bthur0013_4350 [Bacillus thuringiensis IBL
200]
Length = 243
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ ++ D+ + + L ++ + LQ +N
Sbjct: 112 EE------PEFQSKLDILMDYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSNKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|291556337|emb|CBL33454.1| Pyruvate-formate lyase-activating enzyme [Eubacterium siraeum
V10Sc8a]
Length = 237
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 22/157 (14%)
Query: 12 TLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
TL G G F GC L +C +C + G V +
Sbjct: 13 TLDGPGVR------FVLFLQGCPL-----------RCGYCHNPETR-DASGGKTATVKDV 54
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ + K G ++GGEPL+Q L + ++G ++T+G I
Sbjct: 55 MEKVLRCRNYFGKNG-GITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVT 113
Query: 129 DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
+ + V+ D+K+ ++ + +P ++
Sbjct: 114 ELLKVTDLCMLDIKMTNDEDYRKHIGCSLDAPLKFLD 150
>gi|229089571|ref|ZP_04220838.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42]
gi|300119070|ref|ZP_07056781.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1]
gi|228693787|gb|EEL47483.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42]
gi|298723686|gb|EFI64417.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1]
gi|324324548|gb|ADY19808.1| pyruvate formate-lyase-activating enzyme [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 243
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ ++ + L ++ + LQ ++N
Sbjct: 112 EE------PEFQNKLDILMEYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|169825191|ref|YP_001692802.1| pyruvate-formate-lyase-activating enzyme [Finegoldia magna ATCC
29328]
gi|167831996|dbj|BAG08912.1| pyruvate-formate-lyase-activating enzyme [Finegoldia magna ATCC
29328]
Length = 501
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 32/163 (19%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L C +C G Y VD++
Sbjct: 18 VDGPGNRT----IFF-LQGCPLK-----------CVYCHNPD-SQNIHGGKEYTVDEIIK 60
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + ++GGEPLLQ L++ L + GF ++T+G
Sbjct: 61 IARRYKPY-HGQEGGVTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSG---------- 109
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
V K + + L F + I F ++ L
Sbjct: 110 --VGDKKYYSEILPYIDTILLDFKAFDSKLYKQITFMEDKNFL 150
>gi|75760247|ref|ZP_00740301.1| Pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218895566|ref|YP_002443977.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus G9842]
gi|228899192|ref|ZP_04063462.1| hypothetical protein bthur0014_4190 [Bacillus thuringiensis IBL
4222]
gi|228963593|ref|ZP_04124746.1| hypothetical protein bthur0004_4720 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|74492273|gb|EAO55435.1| Pyruvate formate-lyase activating enzyme [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218541045|gb|ACK93439.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus G9842]
gi|228796111|gb|EEM43566.1| hypothetical protein bthur0004_4720 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228860461|gb|EEN04851.1| hypothetical protein bthur0014_4190 [Bacillus thuringiensis IBL
4222]
Length = 243
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGC 109
>gi|52144799|ref|YP_082030.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
activating enzyme) [Bacillus cereus E33L]
gi|196040151|ref|ZP_03107453.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus
NVH0597-99]
gi|225862489|ref|YP_002747867.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102]
gi|51978268|gb|AAU19818.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
activating enzyme) [Bacillus cereus E33L]
gi|196029006|gb|EDX67611.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus
NVH0597-99]
gi|225788466|gb|ACO28683.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102]
Length = 243
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ ++ + L ++ + LQ ++N
Sbjct: 112 EE------PEFQNKLDILMEYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|325663171|ref|ZP_08151621.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 4_1_37FAA]
gi|331086761|ref|ZP_08335838.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|325470625|gb|EGC73855.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 4_1_37FAA]
gi|330409927|gb|EGG89362.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 257
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 30/181 (16%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E T+ G G R +F GC +C +C +
Sbjct: 1 MTKGYIHSIESCGTVDGPGL---RYVIF--LQGCP-----------MRCLYCHNPDTW-E 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
G + +V+++ + +TGGEP++Q+D + L L K +
Sbjct: 44 PNIGEQQSVEEVLEGFYSNLPF--YRHGGVTVTGGEPMMQMDFLIELFTKLKKDHIHTCI 101
Query: 117 ETNGTIEPPQGIDWIC-------VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+T+G + P ++ V+ D+K G+E K + N + + E
Sbjct: 102 DTSGIMFQPSNAVFMEKLEKLLQVTDLIMLDIKHINGEEHKKLTAHSNERILAFARYLDE 161
Query: 170 R 170
+
Sbjct: 162 Q 162
>gi|239631502|ref|ZP_04674533.1| pyruvate-formate lyase-activating enzyme [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|239525967|gb|EEQ64968.1| pyruvate-formate lyase-activating enzyme [Lactobacillus paracasei
subsp. paracasei 8700:2]
Length = 283
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GC +C++C G G
Sbjct: 32 VESFGSVDGPGIR------FVVFMQGC-----------RMRCQYCHNPDTWNIGV-GEEM 73
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
DQ+ + +G +GGE L+Q+D + L G ++T+G
Sbjct: 74 TADQILADAQRYKAFWGDQG-GITCSGGESLVQIDFILELFTKAKALGISTCLDTSGG-P 131
Query: 124 PPQGIDWI 131
+ W
Sbjct: 132 FTRDQPWF 139
>gi|116494898|ref|YP_806632.1| pyruvate-formate lyase-activating enzyme [Lactobacillus casei ATCC
334]
gi|227535104|ref|ZP_03965153.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|116105048|gb|ABJ70190.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus casei ATCC
334]
gi|227187245|gb|EEI67312.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 283
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GC +C++C G G
Sbjct: 32 VESFGSVDGPGIR------FVVFMQGC-----------RMRCQYCHNPDTWNIGV-GEEM 73
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
DQ+ + +G +GGE L+Q+D + L G ++T+G
Sbjct: 74 TADQILADAQRYKAFWGDQG-GITCSGGESLVQIDFILELFTKAKALGISTCLDTSGG-P 131
Query: 124 PPQGIDWI 131
+ W
Sbjct: 132 FTRDQPWF 139
>gi|49480125|ref|YP_034775.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
activating enzyme) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331681|gb|AAT62327.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
activating enzyme) [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 243
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 40/196 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + +L ++ ++ + D ++ + G E
Sbjct: 110 --------------YSEEPEFQNKLDILMEYTDLVLLDLKHIDSKKHR--KLTGKSNEHI 153
Query: 185 TNLAISYC--FQNPKW 198
A Y P W
Sbjct: 154 LQFA-RYLSDKNKPIW 168
>gi|191638408|ref|YP_001987574.1| Formate acetyltransferase activating enzyme [Lactobacillus casei
BL23]
gi|190712710|emb|CAQ66716.1| Formate acetyltransferase activating enzyme [Lactobacillus casei
BL23]
gi|327382437|gb|AEA53913.1| Pyruvate formate-lyase activating enzyme [Lactobacillus casei LC2W]
gi|327385636|gb|AEA57110.1| Pyruvate formate-lyase activating enzyme [Lactobacillus casei
BD-II]
Length = 283
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GC +C++C G G
Sbjct: 32 VESFGSVDGPGIR------FVVFMQGC-----------RMRCQYCHNPDTWNIGV-GEEM 73
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
DQ+ + +G +GGE L+Q+D + L G ++T+G
Sbjct: 74 TADQILADAQRYKAFWGDQG-GITCSGGESLVQIDFILELFTKAKALGISTCLDTSGG-P 131
Query: 124 PPQGIDWI 131
+ W
Sbjct: 132 FTRDQPWF 139
>gi|32033950|ref|ZP_00134206.1| COG1180: Pyruvate-formate lyase-activating enzyme [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208509|ref|YP_001053734.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
pleuropneumoniae L20]
gi|190150360|ref|YP_001968885.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303251032|ref|ZP_07337218.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303253668|ref|ZP_07339806.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245946|ref|ZP_07528029.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307248080|ref|ZP_07530109.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307252674|ref|ZP_07534566.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307257082|ref|ZP_07538857.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259361|ref|ZP_07541088.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261519|ref|ZP_07543188.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263704|ref|ZP_07545312.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126097301|gb|ABN74129.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|189915491|gb|ACE61743.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302647588|gb|EFL77806.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302650042|gb|EFL80212.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306853165|gb|EFM85387.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855478|gb|EFM87652.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306859850|gb|EFM91871.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306864453|gb|EFM96361.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306866597|gb|EFM98458.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868802|gb|EFN00610.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870958|gb|EFN02694.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 245
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 10 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIS 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 52 VEDLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRH 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ DL + ++L Q + N DF R LQ
Sbjct: 112 YSP---VVDEMLEVTDLVMLDLKQLNDEIHQDLIGVSNKRTLDFAR-YLQ 157
>gi|229083745|ref|ZP_04216065.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44]
gi|228699549|gb|EEL52214.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44]
Length = 243
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 66/196 (33%), Gaps = 40/196 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKESGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + ++L ++ ++ + D ++ + G E
Sbjct: 110 --------------YSEEPEFQRKLDILMDYTDLVLLDLKHIDPKKHR--KLTGKTNEHI 153
Query: 185 TNLAISYC--FQNPKW 198
A Y Q P W
Sbjct: 154 LQFA-RYLSDKQKPIW 168
>gi|30260669|ref|NP_843046.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Ames]
gi|47525780|ref|YP_017129.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
'Ames Ancestor']
gi|49183510|ref|YP_026762.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Sterne]
gi|65317928|ref|ZP_00390887.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bacillus
anthracis str. A2012]
gi|165870717|ref|ZP_02215370.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0488]
gi|167634817|ref|ZP_02393136.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0442]
gi|167640786|ref|ZP_02399045.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0193]
gi|170688631|ref|ZP_02879837.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0465]
gi|170707180|ref|ZP_02897636.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0389]
gi|177655125|ref|ZP_02936755.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0174]
gi|190568214|ref|ZP_03021123.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis
Tsiankovskii-I]
gi|196034574|ref|ZP_03101982.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W]
gi|218901649|ref|YP_002449483.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820]
gi|227816618|ref|YP_002816627.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
CDC 684]
gi|228913196|ref|ZP_04076835.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228925699|ref|ZP_04088786.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931938|ref|ZP_04094832.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944262|ref|ZP_04106638.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229120107|ref|ZP_04249359.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201]
gi|229601335|ref|YP_002865113.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0248]
gi|254686898|ref|ZP_05150756.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
CNEVA-9066]
gi|254725978|ref|ZP_05187760.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A1055]
gi|254738875|ref|ZP_05196577.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Western North America USA6153]
gi|254743741|ref|ZP_05201426.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Kruger B]
gi|254756280|ref|ZP_05208309.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Vollum]
gi|254762099|ref|ZP_05213948.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Australia 94]
gi|30254037|gb|AAP24532.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Ames]
gi|47500928|gb|AAT29604.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
'Ames Ancestor']
gi|49177437|gb|AAT52813.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
Sterne]
gi|164713551|gb|EDR19075.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0488]
gi|167511180|gb|EDR86567.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0193]
gi|167529891|gb|EDR92639.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0442]
gi|170127958|gb|EDS96829.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0389]
gi|170667491|gb|EDT18248.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0465]
gi|172080274|gb|EDT65364.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0174]
gi|190560706|gb|EDV14682.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis
Tsiankovskii-I]
gi|195992617|gb|EDX56577.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W]
gi|218536292|gb|ACK88690.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820]
gi|227003394|gb|ACP13137.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
CDC 684]
gi|228663345|gb|EEL18933.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201]
gi|228815413|gb|EEM61658.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827723|gb|EEM73463.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833974|gb|EEM79524.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228846601|gb|EEM91614.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229265743|gb|ACQ47380.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
A0248]
Length = 243
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ ++ + L ++ + LQ ++N
Sbjct: 112 EETE------FQNKLDILMEYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|257869695|ref|ZP_05649348.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum
EG2]
gi|257803859|gb|EEV32681.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum
EG2]
Length = 251
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 28/168 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C FC G R
Sbjct: 11 ESFGSVDGPGIR------FIVFMQGC-----------RMRCEFCHNPDTWKIGAGIERTT 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D L + ++ + GEK ++GGEPLLQ+D + L + G ++T G
Sbjct: 54 DDVLEEALKYREFWGEKG--GLTVSGGEPLLQLDFLIDLFRKAKAAGVNTTLDTCGKPFT 111
Query: 125 PQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ + + V+ D+K K + Q N + +
Sbjct: 112 REEPFFSKFQELMTVTDLLLFDIKHIDNDAHKKLTTQSNDNILEMAKY 159
>gi|251799217|ref|YP_003013948.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
gi|247546843|gb|ACT03862.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
Length = 244
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 22/161 (13%)
Query: 9 IFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
F T+ G G F F GC L C+FC G + V
Sbjct: 10 TFGTVDGPGIR------FVLFMQGCALQ-----------CQFCHNPDTW-DTAAGRQVTV 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR-GFEIAVETNGTIEP 124
D + + IE G +TGGEP L L +A ++ G A++++G +P
Sbjct: 52 DDILEEIEPYLPYYRGSGGGITVTGGEPTLQAPFVAALFKACKEKYGLHTALDSSGFCDP 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
+ + + DLK + + + Q N ++
Sbjct: 112 SHASELMNDTDLVLLDLKQIDRDKHERLTSQPNDRILHFAK 152
>gi|165976460|ref|YP_001652053.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876561|gb|ABY69609.1| pyruvate formate-lyase activating enzyme [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 245
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 10 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIS 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 52 VEDLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRH 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ DL + ++L Q + N DF R LQ
Sbjct: 112 YSP---VVDEMLEVTDLVMLDLKQLNDEIHQDLIGVSNKRTLDFAR-YLQ 157
>gi|153815319|ref|ZP_01967987.1| hypothetical protein RUMTOR_01553 [Ruminococcus torques ATCC 27756]
gi|317501676|ref|ZP_07959867.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331088441|ref|ZP_08337356.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 3_1_46FAA]
gi|145847381|gb|EDK24299.1| hypothetical protein RUMTOR_01553 [Ruminococcus torques ATCC 27756]
gi|316896927|gb|EFV19007.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330408208|gb|EGG87696.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 250
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 20/116 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F +GC + +C+FC KG Y
Sbjct: 15 ESFGSVDGPGV---RYVIF--LTGC-----------AMRCQFCHNPDTW-NLKKGTLYTA 57
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
D+L + ++GGEPLLQ+D + L + + G ++T+G
Sbjct: 58 DELLKTALRYRTY-WGDKGGITVSGGEPLLQIDFLIELFRKAKEAGVHTTLDTSGN 112
>gi|42779644|ref|NP_976891.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus ATCC
10987]
gi|206974358|ref|ZP_03235275.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus H3081.97]
gi|217958047|ref|YP_002336591.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH187]
gi|222094245|ref|YP_002528302.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus Q1]
gi|229137313|ref|ZP_04265928.1| hypothetical protein bcere0013_4470 [Bacillus cereus BDRD-ST26]
gi|42735561|gb|AAS39499.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus ATCC
10987]
gi|206747598|gb|EDZ58988.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus H3081.97]
gi|217063225|gb|ACJ77475.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH187]
gi|221238300|gb|ACM11010.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus Q1]
gi|228646132|gb|EEL02351.1| hypothetical protein bcere0013_4470 [Bacillus cereus BDRD-ST26]
Length = 243
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ ++ + L ++ + LQ ++N
Sbjct: 112 EE------PEFQNKLDILMEYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|307250286|ref|ZP_07532239.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306857668|gb|EFM89771.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 245
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 10 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIS 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 52 VEDLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRH 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ DL + ++L Q + N DF R LQ
Sbjct: 112 YSP---VVDEMLEVTDLVMLDLKQLNDEIHQDLIGVSNKRTLDFAR-YLQ 157
>gi|301052164|ref|YP_003790375.1| formate acetyltransferase activating enzyme [Bacillus anthracis CI]
gi|300374333|gb|ADK03237.1| formate acetyltransferase activating enzyme [Bacillus cereus biovar
anthracis str. CI]
Length = 243
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ ++ + L ++ + LQ ++N
Sbjct: 112 EE------PEFQNKLDILMEYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|315503285|ref|YP_004082172.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5]
gi|315409904|gb|ADU08021.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5]
Length = 261
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R VF +GC L +CR+C + G G R VD++
Sbjct: 32 VDGPGT---RFVVF--LAGCPL-----------RCRYCHSPDTWY-GRSGRRRTVDEMVT 74
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALN-KRGFEIAVETNGT 121
L + G ++GGEPLLQ L++ + G A++T+G
Sbjct: 75 LATRYRRFIQVAGGGVTVSGGEPLLQPAFTRELLRRCHDDLGLHTALDTSGF 126
>gi|302866870|ref|YP_003835507.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca
ATCC 27029]
gi|302569729|gb|ADL45931.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca
ATCC 27029]
Length = 275
Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R VF +GC L +CR+C + G G R VD++
Sbjct: 46 VDGPGT---RFVVF--LAGCPL-----------RCRYCHSPDTWY-GRSGRRRTVDEMVT 88
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALN-KRGFEIAVETNGT 121
L + G ++GGEPLLQ L++ + G A++T+G
Sbjct: 89 LATRYRRFIQVAGGGVTVSGGEPLLQPAFTRELLRRCHDDLGLHTALDTSGF 140
>gi|325843173|ref|ZP_08167859.1| glycine radical enzyme activase, YjjW family [Turicibacter sp.
HGF1]
gi|325489417|gb|EGC91787.1| glycine radical enzyme activase, YjjW family [Turicibacter sp.
HGF1]
Length = 275
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 81/257 (31%), Gaps = 60/257 (23%)
Query: 1 MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA------------- 45
MK Y + +I F ++ G G A+F GCN + +
Sbjct: 1 MKGY-LNKIIPFSSVDGPGNRT---AIF--LQGCNFDCVYCHNPETINHCINCSMCVSAC 54
Query: 46 -----------------QCRFCD--TDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85
+C CD T T + D + + I
Sbjct: 55 PVQALSRVDRLVKFDVSKCVECDACTKKCHRNSTPKYKLLTADDIMNDIMNYRPF----I 110
Query: 86 RYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
+ ++GGE LQ + L + + G ++TNG+ + D + ++ D+K+
Sbjct: 111 QGITVSGGECTLQAPFLIELFKKAKEAGLTCFIDTNGSTDLSLHHDLMSLTDGVMLDVKV 170
Query: 144 KGGQELKLVFPQVNVSPENYIGF--DFERFS-----LQPMDGPFLEENTNLAISYCFQNP 196
K N + + ++ + P E +AI +
Sbjct: 171 WDSVIHKKYIKAPNDMVLKNLDYLIKTKKLYEVRTVIVPELFDNEETIREVAIRISGHDI 230
Query: 197 KWRLSVQTHKF--IGIR 211
+++L K+ +G+R
Sbjct: 231 RYKLI----KYRNLGVR 243
>gi|301066458|ref|YP_003788481.1| pyruvate-formate lyase-activating enzyme [Lactobacillus casei str.
Zhang]
gi|300438865|gb|ADK18631.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus casei str.
Zhang]
Length = 283
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GC +C++C G G
Sbjct: 32 VESFGSVDGPGIR------FVVFMQGC-----------RMRCQYCHNPDTWNIGV-GEEM 73
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
DQ+ + +G +GGE L+Q+D + L G ++T+G
Sbjct: 74 TADQILADAQRYKAFWGDQG-GITCSGGESLVQIDFILELFTKAKALGISTCLDTSGG-P 131
Query: 124 PPQGIDWI 131
+ W
Sbjct: 132 FTRDQPWF 139
>gi|163790380|ref|ZP_02184811.1| pyruvate formate-lyase activating enzyme [Carnobacterium sp. AT7]
gi|159874284|gb|EDP68357.1| pyruvate formate-lyase activating enzyme [Carnobacterium sp. AT7]
Length = 253
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C FC G G Y
Sbjct: 13 ESFGSVDGPGIR------FVTFMQGC-----------RMRCEFCHNPDTWNMG-GGTPYT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
DQL ++GGEPLL +D + + ++G ++T G
Sbjct: 55 ADQLLAEALSYREY-WGSKGGITVSGGEPLLHIDFLIEYFRKAKEQGVHTTLDTCGQ 110
>gi|229171293|ref|ZP_04298882.1| hypothetical protein bcere0006_4220 [Bacillus cereus MM3]
gi|228612187|gb|EEK69420.1| hypothetical protein bcere0006_4220 [Bacillus cereus MM3]
Length = 243
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 37/175 (21%)
Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E T+ G G R +F GC +C++C
Sbjct: 1 MIKGRIHSVESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEI 44
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
G G V+++ + E G ++GGEPLLQ+D + L + + G +
Sbjct: 45 GK-GKEITVEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTI 103
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+++G + + +L ++ ++ + D ++
Sbjct: 104 DSSGGC----------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|152978248|ref|YP_001343877.1| pyruvate formate-lyase activating enzyme [Actinobacillus
succinogenes 130Z]
gi|150839971|gb|ABR73942.1| pyruvate formate-lyase activating enzyme [Actinobacillus
succinogenes 130Z]
Length = 245
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 21/122 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C +C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCLYCHNRDTW-DLHGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G + ++TNG +
Sbjct: 53 VEELMKEVVTYKPFMRASGGGVTASGGEAILQPKFVLEWFRACKAEGIDTCLDTNGFVRH 112
Query: 125 PQ 126
+
Sbjct: 113 YE 114
>gi|261494073|ref|ZP_05990576.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496086|ref|ZP_05992496.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261308336|gb|EEY09629.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310239|gb|EEY11439.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 246
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + + G +GGE +LQ++ +A G ++TNG +
Sbjct: 53 VEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINTCLDTNGFVRH 112
>gi|254362790|ref|ZP_04978871.1| hypothetical protein
gi|153094419|gb|EDN75267.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia
haemolytica PHL213]
Length = 246
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + + G +GGE +LQ++ +A G ++TNG +
Sbjct: 53 VEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINTCLDTNGFVRH 112
>gi|47567277|ref|ZP_00237991.1| formate enzyme [Bacillus cereus G9241]
gi|229154216|ref|ZP_04282337.1| hypothetical protein bcere0010_4160 [Bacillus cereus ATCC 4342]
gi|47556120|gb|EAL14457.1| formate enzyme [Bacillus cereus G9241]
gi|228629230|gb|EEK85936.1| hypothetical protein bcere0010_4160 [Bacillus cereus ATCC 4342]
Length = 243
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|290968353|ref|ZP_06559894.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
type_1 str. 28L]
gi|290781628|gb|EFD94215.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
type_1 str. 28L]
Length = 249
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 25/138 (18%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ I E F + G G F GC+ +CR+C +
Sbjct: 6 MGKIHSTESFGAVDGPGVR------FIIFLQGCH-----------MRCRYCHNPETW-KS 47
Query: 60 TKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
+ Y + D+++E G ++GGE LLQ+D + + + ++G A
Sbjct: 48 NEEEEYTLRSAEDVLKEALRYRSYWKNGGGITISGGEALLQMDFVLAVFSSAKEKGIHTA 107
Query: 116 VETNGTIEPPQGIDWICV 133
++T G + +
Sbjct: 108 LDTAGNPFTEEEPFFSTF 125
>gi|290955630|ref|YP_003486812.1| oxidoreductase [Streptomyces scabiei 87.22]
gi|260645156|emb|CBG68242.1| Putative oxidoreductase [Streptomyces scabiei 87.22]
Length = 244
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 21/112 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F +GC L +C +C G VD++
Sbjct: 17 VDGPGTR------FVLFVAGCPL-----------RCLYCANPDTWHM-RDGKETTVDEVM 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
IE+ G LTGGEPLLQ +++ + G A++T+G
Sbjct: 59 AEIEKYRPFLTTAGGGVTLTGGEPLLQSGFTGEILRRSKELGLHTALDTSGF 110
>gi|330431399|gb|AEC16458.1| pyruvate formate lyase-activating enzyme 1 [Gallibacterium anatis
UMN179]
Length = 246
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 68/228 (29%), Gaps = 46/228 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFTQGC-----------LMRCKYCHNRDTW-DLHSGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ +A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQPEFIRDWFRACKKEGIHTCLDTNGFVR- 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP----- 179
+ + DL + ++L Q + N +F + LQ +
Sbjct: 112 --HYNQVIDELLDVTDLVLLDLKQLDDSIHQDLIGVSNKRTLEFAK-YLQKRNQKTWIRY 168
Query: 180 -------FLEENTNLAISYCFQNPK---WRLSV--QT--HKF--IGIR 211
E + L + L Q HK+ +G++
Sbjct: 169 VVVPGYTDDEHSVQLLGEFIKDMKNIEKVELLPYHQLGKHKWETLGLK 216
>gi|85058965|ref|YP_454667.1| pyruvate formate lyase-activating enzyme 1 [Sodalis glossinidius
str. 'morsitans']
gi|84779485|dbj|BAE74262.1| pyruvate formate-lyase 1 activating enzyme [Sodalis glossinidius
str. 'morsitans']
Length = 246
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 23/167 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIIFFQGC-----------LMRCLYCHNRDTW-DTHGGREIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ + +A + G V+TNG +
Sbjct: 53 VEEIMREVISYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCVDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
P + + V+ D+K + + N ++ + +
Sbjct: 113 YDPVIDELLEVTDLVMLDIKEMNDDIHQNLVGVSNHRTLDFARYLAK 159
>gi|227494256|ref|ZP_03924572.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
coleocanis DSM 15436]
gi|226831990|gb|EEH64373.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
coleocanis DSM 15436]
Length = 296
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 29/190 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G F +GC L +C +C Y D+L
Sbjct: 69 VDGPGTRM---TTF--LAGCPL-----------RCLYCHNPDTMKMRDGTAVY-ADELIK 111
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT------IEP 124
+E + +GGEPL+Q + L++A +RG A++T+G E
Sbjct: 112 RMERYAPVFKASNGGVTFSGGEPLMQPAFLLKLLKAAKERGIHTAIDTSGFLGAHASDEL 171
Query: 125 PQGIDWICVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
+ +D + + K+G + ++L+ + + RF L P E
Sbjct: 172 LENVDLVLLDVKSGLPDVYEKTTGRQLEPTLK-FGRRLADMNKRIWIRFVLVPG-LTDSE 229
Query: 183 ENTNLAISYC 192
EN N
Sbjct: 230 ENVNAVADIV 239
>gi|325297399|ref|YP_004257316.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis
DSM 18170]
gi|324316952|gb|ADY34843.1| pyruvate formate-lyase activating enzyme [Bacteroides salanitronis
DSM 18170]
Length = 242
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 26/179 (14%)
Query: 3 LYSIKEIFLTL---QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + + +L G G R+ VF GCN + + C +G
Sbjct: 1 MIRVH-SYESLGTYDGPGI---RLVVF--LQGCNFRCLYCANPDTIDC----------KG 44
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
D L + ++ G+K +GGEP +Q +PL + L + G I V+
Sbjct: 45 EGKNTAPEDILRMAVSQKPFFGKKG--GITFSGGEPTIQAKALIPLFRMLKEAGIHICVD 102
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG++ D ++ D+K + L L + + ++ + + F L
Sbjct: 103 TNGSVWNESVKDLFTLADLVLLDVKEFNDERHHLLTLRSNEQTLQTAAWLEANEKPFWL 161
>gi|229194825|ref|ZP_04321612.1| hypothetical protein bcere0001_4080 [Bacillus cereus m1293]
gi|228588673|gb|EEK46704.1| hypothetical protein bcere0001_4080 [Bacillus cereus m1293]
Length = 243
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ ++ + L +N + LQ ++N
Sbjct: 112 EE------PEFQNKLDILMEYTDLVLLDLKHINSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|188534276|ref|YP_001908073.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
Et1/99]
gi|188029318|emb|CAO97195.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
Et1/99]
Length = 254
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G +
Sbjct: 19 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVS 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V +L D + G +GGE +LQ + +A +G ++TNG +
Sbjct: 61 VAELMDDVLSYRHYINASGGGVTASGGEAILQAEFVRDWFRACRAKGIHTCLDTNGFVRR 120
>gi|225575496|ref|ZP_03784106.1| hypothetical protein RUMHYD_03587 [Blautia hydrogenotrophica DSM
10507]
gi|225037293|gb|EEG47539.1| hypothetical protein RUMHYD_03587 [Blautia hydrogenotrophica DSM
10507]
Length = 231
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GCN +C FC + + + + + + + ++++ +
Sbjct: 20 ATVF--LGGCNF-----------RCPFCHNSSLVLHENQQPEISQEDVLNFLKKRRGILD 66
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDW 130
+TGGEP LQ +P + + + G+ I ++TNG+ W
Sbjct: 67 G----VCITGGEPTLQKALPDFLSQIKELGYHIKLDTNGSHPQIIKTLW 111
>gi|319643534|ref|ZP_07998157.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp.
3_1_40A]
gi|317384939|gb|EFV65895.1| pyruvate formate-lyase 1 activating enzyme [Bacteroides sp.
3_1_40A]
Length = 242
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E T G G R+ VF GCN +C +C
Sbjct: 1 MIRVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIDTKG 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
+ +D++ + Q K+G +GGEP LQ +PL Q L ++ I ++T
Sbjct: 45 ESTETAIDEIVHMAVSQKAFFGKKG-GVTFSGGEPTLQAKALIPLFQRLKEQNIHICIDT 103
Query: 119 NGTIEPPQGI---DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172
NG+I + W + + ++L + + ++ + + F
Sbjct: 104 NGSIWNEEVEELLKWTDLVLLDIKEFNNVRHRQLTERSNEQTIRTAEWLEKNGKPFWLRY 163
Query: 173 -LQPMDGPFLEENTNL 187
L P F E+ L
Sbjct: 164 VLVPGYSSFEEDIRAL 179
>gi|313893872|ref|ZP_07827438.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. oral
taxon 158 str. F0412]
gi|313441436|gb|EFR59862.1| pyruvate formate-lyase 1-activating enzyme [Veillonella sp. oral
taxon 158 str. F0412]
Length = 258
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 21/122 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRY 65
E T+ G G VF GC +C +C +
Sbjct: 8 VETMGTVDGPGMRM---VVF--LQGCP-----------MRCAYCHNPDTWNEISDDAKFM 51
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V++L D E +TGGE L+Q+D L +R ++T+G
Sbjct: 52 TVEELWDQYERNRQF--YTNGGITVTGGEALMQIDFVTELFTYFRERNVHTCLDTSGICF 109
Query: 124 PP 125
P
Sbjct: 110 DP 111
>gi|228983710|ref|ZP_04143909.1| hypothetical protein bthur0001_4290 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228776018|gb|EEM24385.1| hypothetical protein bthur0001_4290 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 243
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMNYTDLVLLDLKHIDSKKH 142
>gi|228989633|ref|ZP_04149617.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM
12442]
gi|228995821|ref|ZP_04155480.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17]
gi|229003440|ref|ZP_04161260.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4]
gi|228757818|gb|EEM07043.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4]
gi|228763901|gb|EEM12789.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17]
gi|228770170|gb|EEM18750.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM
12442]
Length = 243
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTIDSSGGC 109
>gi|325577286|ref|ZP_08147770.1| pyruvate formate-lyase activating enzyme [Haemophilus
parainfluenzae ATCC 33392]
gi|325160868|gb|EGC72989.1| pyruvate formate-lyase activating enzyme [Haemophilus
parainfluenzae ATCC 33392]
Length = 256
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 21 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGREIS 62
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 63 VEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNGFVRH 122
Query: 125 PQG 127
Sbjct: 123 YDH 125
>gi|315634844|ref|ZP_07890126.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis
ATCC 33393]
gi|315476396|gb|EFU67146.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis
ATCC 33393]
Length = 246
Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 59/188 (31%), Gaps = 32/188 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + QA K G ++TNG +
Sbjct: 53 VEELMKEVVSYRHFMNASGGGVTASGGEAILQAEFVRDWFQACKKEGISTCLDTNGFVR- 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
D + DL + +EL Q + N +F + LQ + N
Sbjct: 112 --HYDHVIDELIDATDLVLLDLKELNDQVHQNLIGVSNKRTLEFAK-YLQ-------KRN 161
Query: 185 TNLAISYC 192
+ I Y
Sbjct: 162 QPVWIRYV 169
>gi|270283860|ref|ZP_05965112.2| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
gallicum DSM 20093]
gi|270277580|gb|EFA23434.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
gallicum DSM 20093]
Length = 280
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L +C++C + G +D +
Sbjct: 51 SVDGPGTRM---TVF--LSGCPL-----------RCQYCQNPDTW-KMRDGKPVTLDAMI 93
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE + +GGE ++Q +A + G ++T+G
Sbjct: 94 KKIERYKDLFKATNGGITFSGGESMMQPAFVSRSFRAAKEMGVHTCLDTSGF 145
>gi|168187740|ref|ZP_02622375.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C
str. Eklund]
gi|169294396|gb|EDS76529.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C
str. Eklund]
Length = 235
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 24/127 (18%)
Query: 1 MKLYSIKEIFLT---LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M I F + + G G R VF GC L +C FC
Sbjct: 1 MITGYIH-SFESMGLVDGPGI---RNVVF--LQGCPL-----------RCSFCHNPDTW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
G + ++L I + G +GGE L+Q + ++ + A
Sbjct: 43 NFNIGDKITPEKLVKKIIRFKPYFKNNG-GVTFSGGESLMQPEFLLKTLKLCKENNIHTA 101
Query: 116 VETNGTI 122
++T+G
Sbjct: 102 IDTSGYY 108
>gi|152974265|ref|YP_001373782.1| pyruvate formate-lyase activating enzyme [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023017|gb|ABS20787.1| pyruvate formate-lyase activating enzyme [Bacillus cytotoxicus NVH
391-98]
Length = 243
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
VD++ + E ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VDEIMQDVTCYLPFIEASEGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSGGC 109
>gi|224539029|ref|ZP_03679568.1| hypothetical protein BACCELL_03928 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519357|gb|EEF88462.1| hypothetical protein BACCELL_03928 [Bacteroides cellulosilyticus
DSM 14838]
Length = 232
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 33/188 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GC +C +C DT I G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPPE 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q + K+G +GGEP LQ +PL + L G I ++TNG I +
Sbjct: 43 EILQMAISQKVFFGKKG-GITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIWNEK 101
Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGP 179
+ + ++ DLK + K + N + + E R+ L P
Sbjct: 102 VEELVSLTDLVLLDLKEFNPERHKKLTGCSNTKTLHTAAWLEEQNRPFWLRYVLVPGYSD 161
Query: 180 FLEENTNL 187
F E+ +L
Sbjct: 162 FEEDIRSL 169
>gi|167749774|ref|ZP_02421901.1| hypothetical protein EUBSIR_00741 [Eubacterium siraeum DSM 15702]
gi|167657257|gb|EDS01387.1| hypothetical protein EUBSIR_00741 [Eubacterium siraeum DSM 15702]
Length = 237
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 22/157 (14%)
Query: 12 TLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
TL G G F GC L +C +C + G V +
Sbjct: 13 TLDGPGVR------FVLFLQGCPL-----------RCGYCHNPETR-DASGGKTATVKDV 54
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ K G ++GGEPL+Q L + ++G ++T+G I
Sbjct: 55 MQKVLRCRNYFGKNG-GITVSGGEPLMQAKFVTELFKECKRQGINTCLDTSGCIMNDDVT 113
Query: 129 DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
+ + V+ D+K+ ++ + +P ++
Sbjct: 114 ELLKVTDLCMLDIKMTNDEDYRKYIGCSLDAPLKFLD 150
>gi|254883806|ref|ZP_05256516.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
4_3_47FAA]
gi|254836599|gb|EET16908.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
4_3_47FAA]
Length = 240
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E T G G R+ VF GCN +C +C
Sbjct: 1 MIRVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIDTKG 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
+ +D++ + Q K+G +GGEP LQ +PL Q L ++ I ++T
Sbjct: 45 ESTETAIDEIVHMAVSQKAFFGKKG-GVTFSGGEPTLQAKALIPLFQRLKEQNIHICIDT 103
Query: 119 NGTIEPPQGI---DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172
NG+I + W + + ++L + + ++ + + F
Sbjct: 104 NGSIWNEEVEELLKWTDLVLLDIKEFNNVRHRQLTERSNEQTIRTAEWLEKNGKPFWLRY 163
Query: 173 -LQPMDGPFLEENTNL 187
L P F E+ L
Sbjct: 164 VLVPGYSSFEEDIRAL 179
>gi|229074375|ref|ZP_04207412.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18]
gi|229095162|ref|ZP_04226155.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29]
gi|229114104|ref|ZP_04243529.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3]
gi|228669374|gb|EEL24791.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3]
gi|228688243|gb|EEL42128.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29]
gi|228708737|gb|EEL60873.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18]
Length = 243
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEVGIHTTIDSSGGC 109
>gi|297587883|ref|ZP_06946527.1| pyruvate formate-lyase activating enzyme [Finegoldia magna ATCC
53516]
gi|297574572|gb|EFH93292.1| pyruvate formate-lyase activating enzyme [Finegoldia magna ATCC
53516]
Length = 501
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L C +C G Y VD++
Sbjct: 18 VDGPGNRT----IFF-LQGCPLK-----------CVYCHNPD-SQNIHGGKEYAVDEIIK 60
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + ++GGEPLLQ L++ L + GF ++T+G + +
Sbjct: 61 IAKRYKPY-HGQEGGVTISGGEPLLQGEFLKELVKRLKQEGFNTCLDTSGVGDKKYYSEI 119
Query: 131 I 131
+
Sbjct: 120 L 120
>gi|222150683|ref|YP_002559836.1| formate acetyltransferase activating enzyme [Macrococcus
caseolyticus JCSC5402]
gi|222119805|dbj|BAH17140.1| formate acetyltransferase activating enzyme [Macrococcus
caseolyticus JCSC5402]
Length = 251
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 34/182 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G GC +C+FC GT
Sbjct: 10 ESLGTVDGPGLR-----YILFTQGC-----------LLRCQFCHNPDTWEIGTPSREVTA 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
+++ + I G ++GGEPLLQ+ L + L + G ++T+
Sbjct: 54 EEMVEEIVPYIPYFNASGGGVTISGGEPLLQLPFIEQLFRRLKEEGIHTCIDTS------ 107
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------QP 175
G + + + L ++ + L QP
Sbjct: 108 AGCFNETPAFMKHFNPVQENTDLFLLDIKHIDNEKHLSLTGKPNTHILKFARMLSDRKQP 167
Query: 176 MD 177
+
Sbjct: 168 VW 169
>gi|307130799|ref|YP_003882815.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
gi|306528328|gb|ADM98258.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
Length = 246
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A +++G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N ++ + +R
Sbjct: 113 YDPVIDELLDVTDLVMLDLKQLNDEVHQNLVGVSNHRTLDFARYLAKR 160
>gi|284007593|emb|CBA73174.1| pyruvate formate-lyase activating enzyme [Arsenophonus nasoniae]
Length = 246
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 21/167 (12%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 11 ESCGTVDGPGI---RFIVF--FQGC-----------LMRCLYCHNRDTW-DTHGGKEITV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
++L + G +GGE +LQ + +A ++G ++TNG +
Sbjct: 54 EELMKEVVSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACQQQGIHTCLDTNGFVRRY 113
Query: 126 Q--GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ + V+ DLK K + N + + +R
Sbjct: 114 DKVIDELLDVTDLVMLDLKQLDDNIHKNLVGVSNHRTLEFARYLAKR 160
>gi|260881038|ref|ZP_05403451.2| pyruvate formate-lyase 1-activating enzyme [Mitsuokella multacida
DSM 20544]
gi|260850246|gb|EEX70253.1| pyruvate formate-lyase 1-activating enzyme [Mitsuokella multacida
DSM 20544]
Length = 244
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 21/117 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC + +C +C G
Sbjct: 11 ETFGSVDGPGTR------FIIFLQGC-----------AMRCLYCHNVDTWDAKKGGELRT 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGT 121
D L D E EG ++GGEP L + L Q +RG ++T G
Sbjct: 54 ADDLLDQAERYRPYWGPEG-GITVSGGEPLLQLDFLLDLFQKAKRRGINTCIDTAGQ 109
>gi|229077802|ref|ZP_04210429.1| hypothetical protein bcere0023_5030 [Bacillus cereus Rock4-2]
gi|228705530|gb|EEL57889.1| hypothetical protein bcere0023_5030 [Bacillus cereus Rock4-2]
Length = 243
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
V+++ + E G ++GGEPLLQ+D + L + + G ++++G
Sbjct: 52 VEEVMQDLTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEAGIHTTIDSSGGC 109
>gi|150005399|ref|YP_001300143.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
vulgatus ATCC 8482]
gi|294777180|ref|ZP_06742637.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides
vulgatus PC510]
gi|149933823|gb|ABR40521.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
vulgatus ATCC 8482]
gi|294449049|gb|EFG17592.1| putative pyruvate formate-lyase 1-activating enzyme [Bacteroides
vulgatus PC510]
Length = 242
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E T G G R+ VF GCN +C +C
Sbjct: 1 MIRVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIDTKG 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
+ +D++ + Q K+G +GGEP LQ +PL Q L ++ I ++T
Sbjct: 45 ESTETAIDEIVRMAVSQKAFFGKKG-GVTFSGGEPTLQAKALIPLFQRLKEQNIHICIDT 103
Query: 119 NGTIEPPQGI---DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172
NG+I + W + + ++L + + ++ + + F
Sbjct: 104 NGSIWNEEVEELLKWTDLVLLDIKEFNNVRHRQLTERSNEQTIRTAEWLEKNGKPFWLRY 163
Query: 173 -LQPMDGPFLEENTNL 187
L P F E+ L
Sbjct: 164 VLVPGYSSFEEDIRAL 179
>gi|282895351|ref|ZP_06303552.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Raphidiopsis brookii D9]
gi|281199602|gb|EFA74463.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Raphidiopsis brookii D9]
Length = 262
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R +F GC +C +C G V
Sbjct: 30 ETCGTVDGPGI---RFVIF--TQGC-----------LLRCLYCHNPDTR-DTKTGKEITV 72
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+L IE+ E ++GGEPLLQ + + + + A++T+G
Sbjct: 73 GELVTEIEKYRSYMEFTSGGVTISGGEPLLQPEFVREVFRQCQELNIHTALDTSGF 128
>gi|269139528|ref|YP_003296229.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
EIB202]
gi|267985189|gb|ACY85018.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
EIB202]
gi|304559417|gb|ADM42081.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
FL6-60]
Length = 246
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 51/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKDTVTYRHFMNASGGGVTASGGEAMLQAEFVRDWFRACQAEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK K + N + + +R
Sbjct: 113 YDPVIDELLDVTDLVMLDLKQMNDDIHKNLVGVSNHRTLEFCRYLAKR 160
>gi|220933148|ref|YP_002510056.1| pyruvate formate-lyase activating enzyme [Halothermothrix orenii H
168]
gi|219994458|gb|ACL71061.1| pyruvate formate-lyase activating enzyme [Halothermothrix orenii H
168]
Length = 247
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 17 GGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
G H G R VF GC L +C++C ++ G R +L
Sbjct: 13 GVHDGPGIRYVVF--TQGCPL-----------RCQYCHNPDTWMR-KAGKRVEAGELLLR 58
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ + + G ++GGEP LQ L++A ++G A++T+G
Sbjct: 59 VLKCKPYMDSSGGGVTISGGEPTLQPGFVRELLKACKEQGIHTALDTSGY 108
>gi|288803833|ref|ZP_06409259.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
melaninogenica D18]
gi|288333667|gb|EFC72116.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
melaninogenica D18]
Length = 257
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 22/122 (18%)
Query: 2 KLYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + E F ++ G G R +F GC + +C++C
Sbjct: 16 MMLRVHSVESFGSVDGPGI---RFVIF--LKGC-----------AMRCQYCHNPDTW-DR 58
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVE 117
G +VD + + ++GGE LL Q L + G ++
Sbjct: 59 AGGNLRSVDDVLSQAQRYRSY-WGTKGGITVSGGEALLQIQPLTELFRKAKALGINTCLD 117
Query: 118 TN 119
T+
Sbjct: 118 TS 119
>gi|199599261|ref|ZP_03212662.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus rhamnosus
HN001]
gi|229552219|ref|ZP_04440944.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
rhamnosus LMS2-1]
gi|258508417|ref|YP_003171168.1| pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
GG]
gi|199589873|gb|EDY97978.1| Pyruvate-formate lyase-activating enzyme [Lactobacillus rhamnosus
HN001]
gi|229314405|gb|EEN80378.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
rhamnosus LMS2-1]
gi|257148344|emb|CAR87317.1| Pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
GG]
gi|259649731|dbj|BAI41893.1| formate acetyltransferase activating enzyme [Lactobacillus
rhamnosus GG]
Length = 283
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 23/128 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GC +C++C G G
Sbjct: 32 VESFGSVDGPGIR------FVVFMQGC-----------RMRCQYCHNPDTWNIGV-GEEM 73
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
DQ+ + ++G +GGE L+Q+D + L + G ++T+G
Sbjct: 74 TADQILADAQRYKAFWGEQG-GITCSGGESLVQIDFILELFTKAKELGISTCLDTSGG-P 131
Query: 124 PPQGIDWI 131
+ W
Sbjct: 132 FTRDQPWF 139
>gi|301154949|emb|CBW14412.1| pyruvate formate lyase activating enzyme 1 [Haemophilus
parainfluenzae T3T1]
Length = 246
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGREIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|271500817|ref|YP_003333842.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586]
gi|270344372|gb|ACZ77137.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586]
Length = 246
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A +++G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRR 112
>gi|315651793|ref|ZP_07904797.1| pyruvate formate-lyase activating enzyme [Eubacterium saburreum DSM
3986]
gi|315485923|gb|EFU76301.1| pyruvate formate-lyase activating enzyme [Eubacterium saburreum DSM
3986]
Length = 248
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 36/168 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F + G G R VF GC +C+FC + +
Sbjct: 11 ETFGLVDGPGV---RFVVFV--QGCP-----------MRCQFCHNPDTWS-TDENQSFTA 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
++ D + G ++GGEPLLQ+D L + + G ++T G
Sbjct: 54 KEVFDKAIRYKPYWKDNG-GITVSGGEPLLQIDFLTELFRLCKENGVNTCLDTAGG---- 108
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ K ++ K++ ++ + + +R +
Sbjct: 109 ------------PFSKEAKFFEKFKILMQYTDLIMLDIKEINNKRHKI 144
>gi|238920354|ref|YP_002933869.1| pyruvate formate lyase-activating enzyme 1 [Edwardsiella ictaluri
93-146]
gi|238869923|gb|ACR69634.1| pyruvate formate-lyase 1-activating enzyme, putative [Edwardsiella
ictaluri 93-146]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 51/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKDTVTYRHFMNASGGGVTASGGEAMLQAEFVRDWFRACQAEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK K + N + + +R
Sbjct: 113 YDPVIDELLDVTDLVMLDLKQMNDDIHKNLVGVSNHRTLEFCRYLAKR 160
>gi|125974087|ref|YP_001037997.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
gi|281418232|ref|ZP_06249252.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
thermocellum JW20]
gi|125714312|gb|ABN52804.1| Radical SAM [Clostridium thermocellum ATCC 27405]
gi|281409634|gb|EFB39892.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
thermocellum JW20]
Length = 280
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 46/202 (22%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------------------- 44
+ +I F T+ G G A+F GCN+ + +
Sbjct: 5 VNKIIPFSTVDGPGNRT---AIF--LQGCNMNCLYCHNPETRCKCMHCGACVNSCPTGAL 59
Query: 45 -----------AQCRFCDT--DFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90
A+C CD+ + +Q+ +E+Q R +
Sbjct: 60 SFEDEKVRYNCAKCVHCDSCIKACPHDSSPKTVDMTPEQVWRKVEKQIPF----IRGITV 115
Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+GGE L L G +++NGT++ D + V+ D+K +E
Sbjct: 116 SGGECTLYPEFLTELFILAQAHGLSTLIDSNGTLDFEHYPDLLAVTDGVMLDIKAFDCEE 175
Query: 149 LKLVFPQVNVSPENYIGFDFER 170
K V N F +
Sbjct: 176 HKRVTGWSNQVVLKNARFLASK 197
>gi|148977582|ref|ZP_01814161.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
SWAT-3]
gi|145963233|gb|EDK28500.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
SWAT-3]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 31/199 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCMYCHNRDTW-DLHDGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + + + G +GGE +LQ + A G ++TNG I
Sbjct: 53 VEEIINEAKSYRHFMKASGGGITCSGGEAMLQPEFVRDFFLAAKAEGIHTCLDTNGYIRK 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQP 175
+ + + DLK + N ++ + + R+ + P
Sbjct: 113 HTEVVDEVLDAADLVMLDLKHMRDEIHHDFIGVSNKRTLDFARYLHKIGKTTWIRYVIVP 172
Query: 176 MDGPFLEENTNLAISYCFQ 194
E+ +L +
Sbjct: 173 GYT-DTPEDAHLLGEFIKD 190
>gi|153953731|ref|YP_001394496.1| Act [Clostridium kluyveri DSM 555]
gi|219854350|ref|YP_002471472.1| hypothetical protein CKR_1007 [Clostridium kluyveri NBRC 12016]
gi|146346612|gb|EDK33148.1| Act [Clostridium kluyveri DSM 555]
gi|219568074|dbj|BAH06058.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 242
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC L +C FC I +G ++L
Sbjct: 13 VDGPGIRV---VVF--FQGCRL-----------RCAFCHNPDTWIM-DEGMEIEANELIK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ + + EK G +GG+PL+Q + + + A++T+G
Sbjct: 56 KVLKFKVYFEKSGGGVTCSGGDPLMQPEFLLEFFKLCKENNINTALDTSGF 106
>gi|160882012|ref|YP_001560980.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium phytofermentans ISDg]
gi|160430678|gb|ABX44241.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium phytofermentans ISDg]
Length = 232
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
+L + +C FC + I + +Y+ D++ + + + E ++G
Sbjct: 17 HLACTIFTKGCNFRCPFCQNASLVISSEEIPQYSEDEILNFLSSRKHILEG----ICISG 72
Query: 93 GEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
GEP + + I+ + G+ + ++TNGT
Sbjct: 73 GEPTMQPDLIDFIRKVKSMGYFVKLDTNGTHP 104
>gi|317491449|ref|ZP_07949885.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920996|gb|EFV42319.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGTEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEDLMKDVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKEEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + N + + +R
Sbjct: 113 YDPVIDELLDVTDLVMLDLKQMNDDIHQNLVGVSNHRTLEFARYLAKR 160
>gi|22297770|ref|NP_681017.1| pyruvate formate lyase activating enzyme [Thermosynechococcus
elongatus BP-1]
gi|22293947|dbj|BAC07779.1| pyruvate formate lyase activating enzyme [Thermosynechococcus
elongatus BP-1]
Length = 254
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 21/131 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC L +C +C + +G
Sbjct: 23 VETCGTVDGPGI---RYVIF--TQGCPL-----------RCLYCHNPDCR-EPHQGKLVT 65
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L I+ + +GGEPL+Q + + + ++ G A++T+G +
Sbjct: 66 VDELIADIQHYQSYLRQG--GVTASGGEPLMQPEFVREIFERCHELGLHTALDTSGYVLL 123
Query: 125 PQGIDWICVSP 135
+ V+
Sbjct: 124 EAAKPVVAVTD 134
>gi|170769309|ref|ZP_02903762.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
TW07627]
gi|170121961|gb|EDS90892.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
TW07627]
Length = 265
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 132 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 179
>gi|118476198|ref|YP_893349.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis
str. Al Hakam]
gi|196045353|ref|ZP_03112585.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108]
gi|229182833|ref|ZP_04310070.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1]
gi|118415423|gb|ABK83842.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis
str. Al Hakam]
gi|196023937|gb|EDX62612.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108]
gi|228600639|gb|EEK58222.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1]
Length = 243
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 26/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D + L + + G V+++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLIELFKKCKEIGIHTTVDSSGGCYS 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ + D+ ++ + L ++ + LQ ++N
Sbjct: 112 EE------PEFQNKLDILMEYTDLVLLDLKHIDSKKHRKLTGKPNEHILQ-FARYLSDKN 164
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 165 KPIWVRHVL 173
>gi|191167604|ref|ZP_03029415.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
gi|190902365|gb|EDV62103.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
Length = 265
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 132 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 179
>gi|265750428|ref|ZP_06086491.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
3_1_33FAA]
gi|263237324|gb|EEZ22774.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp.
3_1_33FAA]
Length = 242
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 28/196 (14%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E T G G R+ VF GCN +C +C
Sbjct: 1 MIRVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIDTKG 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
+ +D++ + Q K+G +GGEP LQ +PL Q L ++ I ++T
Sbjct: 45 ESTETTIDEIVRMAVSQKAFFGKKG-GVTFSGGEPTLQAKALIPLFQRLKEQNIHICIDT 103
Query: 119 NGTIEPPQGID---WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172
NG+I + + W + + ++L + + ++ + + F
Sbjct: 104 NGSIWNEEVKELLQWTDLVLLDIKEFNNVRHRQLTERSNEQTIRTAGWLEKNGKPFWLRY 163
Query: 173 -LQPMDGPFLEENTNL 187
L P F E+ L
Sbjct: 164 VLVPGYSSFEEDIRAL 179
>gi|240950300|ref|ZP_04754575.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
NM305]
gi|240295202|gb|EER46010.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
NM305]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 53 VEDLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRH 112
>gi|319898144|ref|YP_004136341.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
F3031]
gi|317433650|emb|CBY82035.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
F3031]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLDGGREIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVSYRHFMNATGGGVTASGGEAILQAEFVRDWFRACKAEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|293375016|ref|ZP_06621309.1| putative pyruvate formate-lyase-activating enzyme [Turicibacter
sanguinis PC909]
gi|292646354|gb|EFF64371.1| putative pyruvate formate-lyase-activating enzyme [Turicibacter
sanguinis PC909]
Length = 275
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 81/257 (31%), Gaps = 60/257 (23%)
Query: 1 MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA------------- 45
MK Y + +I F ++ G G A+F GCN + +
Sbjct: 1 MKGY-LNKIIPFSSVDGPGNRT---AIF--LQGCNFECVYCHNPETINHCINCSMCVSAC 54
Query: 46 -----------------QCRFCD--TDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEG 85
+C CD T T + D + + I
Sbjct: 55 PVQALSRVDRLVKFDVSKCVECDACTKKCHRNSTPKYKLLTADDIMNDIMNYRPF----I 110
Query: 86 RYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
+ ++GGE LQ + L + + G ++TNG+ + D + ++ D+K+
Sbjct: 111 QGITVSGGECTLQAPFLIELFKKAKEAGLTCFIDTNGSTDLSLQHDLMSLTDGVMLDVKV 170
Query: 144 KGGQELKLVFPQVNVSPENYIGF--DFERFS-----LQPMDGPFLEENTNLAISYCFQNP 196
K N + + ++ + P E +AI +
Sbjct: 171 WDSVIHKKYIKAPNDMVLKNLDYLIKTKKLYEVRTVIVPELFDNEETIREVAIRISGHDI 230
Query: 197 KWRLSVQTHKF--IGIR 211
+++L K+ +G+R
Sbjct: 231 RYKLI----KYRNLGVR 243
>gi|257465668|ref|ZP_05630039.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
202]
gi|257451328|gb|EEV25371.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
202]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 53 VEDLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRH 112
>gi|258539630|ref|YP_003174129.1| pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
Lc 705]
gi|257151306|emb|CAR90278.1| Pyruvate formate-lyase activating enzyme [Lactobacillus rhamnosus
Lc 705]
Length = 267
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 23/128 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GC +C++C G G
Sbjct: 16 VESFGSVDGPGIR------FVVFMQGC-----------RMRCQYCHNPDTWNIGV-GEEM 57
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
DQ+ + ++G +GGE L+Q+D + L + G ++T+G
Sbjct: 58 TADQILADAQRYKAFWGEQG-GITCSGGESLVQIDFILELFTKAKELGISTCLDTSGG-P 115
Query: 124 PPQGIDWI 131
+ W
Sbjct: 116 FTRDQPWF 123
>gi|15894268|ref|NP_347617.1| pyruvate-formate-lyase-activating enzyme [Clostridium
acetobutylicum ATCC 824]
gi|15023888|gb|AAK78957.1|AE007614_5 Pyruvate-formate-lyase-activating enzyme [Clostridium
acetobutylicum ATCC 824]
gi|325508395|gb|ADZ20031.1| Pyruvate-formate-lyase-activating enzyme [Clostridium
acetobutylicum EA 2018]
Length = 237
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC L +C FC G + ++L
Sbjct: 13 VDGPGIRV---VVF--FQGCRL-----------RCAFCHNPDTW-NVNSGEEISAEELML 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
++ +K G +GGEPL+Q + ++ + G V+T G
Sbjct: 56 KVKRYKNYFDKSGGGVTCSGGEPLMQPEFLLEFLKLCKENGINTVVDTAGF 106
>gi|315925289|ref|ZP_07921501.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621410|gb|EFV01379.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 20/115 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC +C FC
Sbjct: 11 ETFGSVDGPGI---RFVIF--LKGC-----------RMRCLFCHNADTW-DPKSDIMMTA 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
D+L D E ++G ++GGEPLLQ+ + L RG ++T G
Sbjct: 54 DELLDQAERYRPYWGRKG-GITVSGGEPLLQIEFLLELFTKAKARGIHTCLDTCG 107
>gi|256004437|ref|ZP_05429417.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
thermocellum DSM 2360]
gi|255991578|gb|EEU01680.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
thermocellum DSM 2360]
gi|316941332|gb|ADU75366.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
thermocellum DSM 1313]
Length = 280
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 46/202 (22%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------------------- 44
+ +I F T+ G G A+F GCN+ + +
Sbjct: 5 VNKIIPFSTVDGPGNRT---AIF--LQGCNMNCLYCHNPETRCKCMHCGACVNSCPTGAL 59
Query: 45 -----------AQCRFCDT--DFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90
A+C CD+ + +Q+ +E+Q R +
Sbjct: 60 SFEDEKVRYNCAKCVHCDSCIKACPHDSSPKTVDMTPEQVWRKVEKQIPF----IRGITV 115
Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+GGE L L G +++NGT++ D + V+ D+K +E
Sbjct: 116 SGGECTLYPEFLTELFILAQAHGLSTLIDSNGTLDFEHYPDLLAVTDGVMLDIKAFDCEE 175
Query: 149 LKLVFPQVNVSPENYIGFDFER 170
K V N F +
Sbjct: 176 HKRVTGWSNQVVLKNARFLASK 197
>gi|157154815|ref|YP_001462103.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
E24377A]
gi|301022943|ref|ZP_07186758.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
69-1]
gi|157076845|gb|ABV16553.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E24377A]
gi|294493276|gb|ADE92032.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
IHE3034]
gi|300397284|gb|EFJ80822.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
69-1]
gi|315296163|gb|EFU55471.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
16-3]
gi|324113806|gb|EGC07781.1| pyruvate formate-lyase 1-activating enzyme [Escherichia fergusonii
B253]
gi|324116115|gb|EGC10039.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1167]
Length = 265
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 132 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 179
>gi|117623083|ref|YP_851996.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
O1]
gi|115512207|gb|ABJ00282.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
O1]
Length = 265
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 132 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 179
>gi|331651920|ref|ZP_08352939.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
gi|331050198|gb|EGI22256.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
Length = 255
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 20 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 61
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 62 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 121
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + N + + +
Sbjct: 122 YDPVIDELLEVTDLVMLDLKQMNDDIHQNLVGVSNHRTLEFAKYLANK 169
>gi|331092301|ref|ZP_08341129.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330401733|gb|EGG81312.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 252
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 23/136 (16%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E T+ G G R VF GC +C++C +
Sbjct: 1 MTKGYIHSIESCGTVDGPGI---RYVVF--LQGCP-----------MRCQYCHNPDTW-K 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
G ++ V ++ + +TGGEP++Q+D + L L K G +
Sbjct: 44 VNTGEQHTVAEVLEGFYTNRPF--YRNGGVTVTGGEPMMQMDFLIELFTQLKKDGIHTCI 101
Query: 117 ETNGTIEPPQGIDWIC 132
+++G + P+ ++
Sbjct: 102 DSSGVMFQPENEVFMN 117
>gi|313673576|ref|YP_004051687.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Calditerrivibrio nitroreducens DSM 19672]
gi|312940332|gb|ADR19524.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Calditerrivibrio nitroreducens DSM 19672]
Length = 230
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 30/128 (23%)
Query: 1 MKLYSIKEIFLTLQGEGG----HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG 56
M + EI E G+VA GCNL +CR+C +
Sbjct: 1 MWTLPVSEI------ETVSLTNFTGKVACTVFTIGCNL-----------RCRYCYNKSLV 43
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIA 115
++ K +++++ D I+ + +TGGEPLL + L GFEI
Sbjct: 44 LKTEKP--VDIEKIRDKIKTL------PLKNIAITGGEPLLHYSLKDFLYFLKDSGFEIK 95
Query: 116 VETNGTIE 123
++TNGT
Sbjct: 96 LDTNGTFP 103
>gi|283784729|ref|YP_003364594.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
ICC168]
gi|282948183|emb|CBG87750.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
ICC168]
Length = 246
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + ++
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQHLVGVSNHRTLEFAQYLAKK 160
>gi|229830129|ref|ZP_04456198.1| hypothetical protein GCWU000342_02236 [Shuttleworthia satelles DSM
14600]
gi|229791427|gb|EEP27541.1| hypothetical protein GCWU000342_02236 [Shuttleworthia satelles DSM
14600]
Length = 248
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 1 MKLYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M + + E F ++ G G R +F GCN +CR+C
Sbjct: 1 MAIGRVHSVESFGSVDGPGI---RYIIF--LQGCN-----------MRCRYCHNVDTW-D 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEI 114
YN + + L+++ G+ ++GG+PLLQ+D + L + +R
Sbjct: 44 IDDVKNYNEQEASALLDQAERYRSYWGKEGGITVSGGDPLLQIDFLLELFRQAKERKINT 103
Query: 115 AVETN 119
++T+
Sbjct: 104 CIDTS 108
>gi|302346841|ref|YP_003815139.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
melaninogenica ATCC 25845]
gi|302150736|gb|ADK96997.1| pyruvate formate-lyase 1-activating enzyme [Prevotella
melaninogenica ATCC 25845]
Length = 269
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 22/122 (18%)
Query: 2 KLYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + E F ++ G G R +F GC + +C++C
Sbjct: 28 MMLRVHSVESFGSVDGPGI---RFVIF--LKGC-----------AMRCQYCHNPDTW-DR 70
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVE 117
G +VD + + ++GGE LL Q L + G ++
Sbjct: 71 AGGNLRSVDDVLSQAQRYRSY-WGTKGGITVSGGEALLQIQPLTELFRKAKALGINTCLD 129
Query: 118 TN 119
T+
Sbjct: 130 TS 131
>gi|198275686|ref|ZP_03208217.1| hypothetical protein BACPLE_01858 [Bacteroides plebeius DSM 17135]
gi|198271315|gb|EDY95585.1| hypothetical protein BACPLE_01858 [Bacteroides plebeius DSM 17135]
Length = 242
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 26/179 (14%)
Query: 3 LYSIKEIFLTL---QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + + +L G G R+ VF GCN +C +C
Sbjct: 1 MIRVH-SYESLGTYDGPGI---RLVVF--LQGCNF-----------RCLYCANPDTIDAK 43
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
+ +++ + Q K+G +GGEP Q VPL + L + G I V+
Sbjct: 44 GESKETAPEEILKMAVSQKPFFGKKG-GITFSGGEPTFQAKALVPLFRMLKEAGIHICVD 102
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSL 173
TNG I + + ++ D+K + K + + N + ++ + + F L
Sbjct: 103 TNGGIWNEDVKELLSLADLVLLDVKEFNDERHKALTARSNAQTLKTAAWLEENQKPFWL 161
>gi|163938437|ref|YP_001643321.1| pyruvate formate-lyase activating enzyme [Bacillus
weihenstephanensis KBAB4]
gi|229009930|ref|ZP_04167149.1| hypothetical protein bmyco0001_4000 [Bacillus mycoides DSM 2048]
gi|229056285|ref|ZP_04195706.1| hypothetical protein bcere0026_4160 [Bacillus cereus AH603]
gi|229165447|ref|ZP_04293231.1| hypothetical protein bcere0007_4350 [Bacillus cereus AH621]
gi|163860634|gb|ABY41693.1| pyruvate formate-lyase activating enzyme [Bacillus
weihenstephanensis KBAB4]
gi|228618045|gb|EEK75086.1| hypothetical protein bcere0007_4350 [Bacillus cereus AH621]
gi|228721090|gb|EEL72628.1| hypothetical protein bcere0026_4160 [Bacillus cereus AH603]
gi|228751361|gb|EEM01168.1| hypothetical protein bmyco0001_4000 [Bacillus mycoides DSM 2048]
Length = 243
Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMEYTDLVLLDLKHIDSKKH 142
>gi|325265165|ref|ZP_08131891.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium sp. D5]
gi|324029569|gb|EGB90858.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium sp. D5]
Length = 231
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F +GCN +C FC + +++ ++++ +
Sbjct: 21 TIF--TAGCNF-----------RCPFCHNASLVTHVDVNNNIPEEEVFSFLKKRKGVLDG 67
Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
+TGGEPLLQ D+ I+A+ G+ + ++TNG
Sbjct: 68 ----VCITGGEPLLQPDIEDFIRAVKALGYAVKLDTNG 101
>gi|325970893|ref|YP_004247084.1| pyruvate formate-lyase activating enzyme [Spirochaeta sp. Buddy]
gi|324026131|gb|ADY12890.1| pyruvate formate-lyase activating enzyme [Spirochaeta sp. Buddy]
Length = 254
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 23/120 (19%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F TL G G R VF GC S +CR+C N
Sbjct: 10 VESFGTLDGPGL---RYVVF--LQGC-----------SLRCRYCHNP----DTWNLNGGN 49
Query: 67 VDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+ DL++E + ++GGEPL Q + L++ L + G A++T G++
Sbjct: 50 LSDSEDLVQEILGYRNFIAKGGVTISGGEPLKQPQFALALLKRLKQEGLHTALDTAGSVP 109
>gi|238927635|ref|ZP_04659395.1| [formate-C-acetyltransferase]-activating enzyme [Selenomonas
flueggei ATCC 43531]
gi|238884560|gb|EEQ48198.1| [formate-C-acetyltransferase]-activating enzyme [Selenomonas
flueggei ATCC 43531]
Length = 251
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C + G
Sbjct: 12 ESFGSVDGPGIR------FIVFVQGC-----------RYRCQYCHNPETW-EREGGYEAT 53
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
+++ + W R ++GGEPLLQ++ L + ++G ++T G
Sbjct: 54 AEEIF---RQAWRYRPYWKRTGGITVSGGEPLLQLEFVTELFRLAKEKGVNTVIDTAG 108
>gi|229015831|ref|ZP_04172806.1| hypothetical protein bcere0030_4180 [Bacillus cereus AH1273]
gi|229022037|ref|ZP_04178593.1| hypothetical protein bcere0029_4030 [Bacillus cereus AH1272]
gi|228739293|gb|EEL89733.1| hypothetical protein bcere0029_4030 [Bacillus cereus AH1272]
gi|228745463|gb|EEL95490.1| hypothetical protein bcere0030_4180 [Bacillus cereus AH1273]
Length = 243
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMDYTDLVLLDLKHIDSKKH 142
>gi|329938554|ref|ZP_08287979.1| oxidoreductase [Streptomyces griseoaurantiacus M045]
gi|329302527|gb|EGG46418.1| oxidoreductase [Streptomyces griseoaurantiacus M045]
Length = 249
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 21/112 (18%)
Query: 13 LQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F SGC L +C +C G VD++
Sbjct: 22 VDGPGTR------FVLFLSGCPL-----------RCLYCANPDTWHM-RDGRTATVDEIM 63
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE+ G LTGGE LLQ L++ + G A++T+G
Sbjct: 64 AEIEKYRPFLTASGGGVTLTGGEALLQPAFTGALLRRCKEAGLHTALDTSGF 115
>gi|304438738|ref|ZP_07398666.1| pyruvate formate-lyase activating enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304372740|gb|EFM26318.1| pyruvate formate-lyase activating enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 307
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 8 EIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G + +F GC + +C +C T G +
Sbjct: 68 ETFGAVDGPGLRYI----LF--LQGCPM-----------RCLYCHNPDTWR-TTGGKLMS 109
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
V+++ + E+ + + +TGGEPLLQ+D L + KR A++++G
Sbjct: 110 VEEVLNDYEKYRVYLKNG--GITVTGGEPLLQMDFVTELFKEAKKRNIHTALDSSG 163
>gi|320085207|emb|CBY94993.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 292
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 57 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 98
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 99 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 158
>gi|262040998|ref|ZP_06014220.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259041692|gb|EEW42741.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVHDWFRACKKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + ++
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLIGVSNHRTLEFAQYLAKK 160
>gi|229131444|ref|ZP_04260340.1| hypothetical protein bcere0014_4130 [Bacillus cereus BDRD-ST196]
gi|228652028|gb|EEL07969.1| hypothetical protein bcere0014_4130 [Bacillus cereus BDRD-ST196]
Length = 243
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 35/167 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC +C++C G G
Sbjct: 9 VESCGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNADTWEIGK-GKEIT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ + E G ++GGEPLLQ+D L + + G ++++G
Sbjct: 52 VEEVMQDVTCYLPFIEASGGGITVSGGEPLLQLDFLTQLFKKCKEAGIHTTIDSSGGC-- 109
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ + +L ++ ++ + D ++
Sbjct: 110 --------------YSEEPEFQNKLDILMEYTDLVLLDLKHIDSKKH 142
>gi|205358099|ref|ZP_02575805.2| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|62127127|gb|AAX64830.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|205327467|gb|EDZ14231.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|323129235|gb|ADX16665.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|326627221|gb|EGE33564.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 292
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 57 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 98
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 99 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 158
>gi|157369944|ref|YP_001477933.1| pyruvate formate lyase-activating enzyme 1 [Serratia proteamaculans
568]
gi|157321708|gb|ABV40805.1| pyruvate formate-lyase activating enzyme [Serratia proteamaculans
568]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELMKDAVSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + + DLK + + N + + +R
Sbjct: 113 YDPVIDELLDATDLVMLDLKQMNDDIHQNLVGVSNHRTLEFARYLAKR 160
>gi|156934609|ref|YP_001438525.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter sakazakii
ATCC BAA-894]
gi|156532863|gb|ABU77689.1| hypothetical protein ESA_02443 [Cronobacter sakazakii ATCC BAA-894]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
>gi|242239673|ref|YP_002987854.1| pyruvate formate lyase-activating enzyme 1 [Dickeya dadantii
Ech703]
gi|242131730|gb|ACS86032.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech703]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIAFFQGC-----------LMRCLYCHNRDTW-DTHGGREIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A +++G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRR 112
>gi|51891252|ref|YP_073943.1| pyruvate formate lyase activating enzyme [Symbiobacterium
thermophilum IAM 14863]
gi|51854941|dbj|BAD39099.1| pyruvate formate lyase activating enzyme [Symbiobacterium
thermophilum IAM 14863]
Length = 255
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 25/200 (12%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E + G G R VF GC L +CR+C G G
Sbjct: 22 VESCGAVDGPGL---RFVVFV--QGCPL-----------RCRYCHNPDTWDPGQ-GAEVT 64
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V L + I+ + G ++GGEPLLQ D L + A++T+G P
Sbjct: 65 VGSLIEEIQSYVPYMKFSGGGVTVSGGEPLLQPDFVADLFAECRRLFIHTALDTSGFAPP 124
Query: 125 P------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDG 178
+ D + + K L+ K + P+ +G +
Sbjct: 125 ERARRVLEQTDLLLLDIKHPDLLRHKALTGVDGRPPRTTARLAAAMGIPIWIRYVVVPGW 184
Query: 179 PFLEENTNLAISYCFQNPKW 198
+ P
Sbjct: 185 TDSPADVEALADLVQTLPTV 204
>gi|205352177|ref|YP_002225978.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207856361|ref|YP_002243012.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|16419481|gb|AAL19904.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|205271958|emb|CAR36802.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|206708164|emb|CAR32457.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261246186|emb|CBG23990.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|301157513|emb|CBW17003.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
Length = 274
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 39 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 80
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 81 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 140
>gi|251789946|ref|YP_003004667.1| pyruvate formate lyase-activating enzyme 1 [Dickeya zeae Ech1591]
gi|247538567|gb|ACT07188.1| pyruvate formate-lyase activating enzyme [Dickeya zeae Ech1591]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A +++G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEQGINTCLDTNGFVRR 112
>gi|152969487|ref|YP_001334596.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|206581035|ref|YP_002239448.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
342]
gi|238893959|ref|YP_002918693.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae
NTUH-K2044]
gi|288936299|ref|YP_003440358.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola
At-22]
gi|290510646|ref|ZP_06550016.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55]
gi|330014097|ref|ZP_08307854.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3]
gi|150954336|gb|ABR76366.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|206570093|gb|ACI11869.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
342]
gi|238546275|dbj|BAH62626.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|288891008|gb|ADC59326.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola
At-22]
gi|289777362|gb|EFD85360.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55]
gi|328533278|gb|EGF60031.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + ++
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAQYLAKK 160
>gi|260597299|ref|YP_003209870.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter turicensis
z3032]
gi|260216476|emb|CBA29623.1| Pyruvate formate-lyase 1-activating enzyme [Cronobacter turicensis
z3032]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
>gi|327393327|dbj|BAK10749.1| pyruvate formate-lyase 1- activating enzyme PflA [Pantoea ananatis
AJ13355]
Length = 290
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 52/171 (30%), Gaps = 27/171 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 55 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHAGKEIT 96
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT-IE 123
V+ L + G +GGE +LQ + +A G ++TNG
Sbjct: 97 VEALMADVLSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRR 156
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
ID + + + E+ + V+ N+ DF R LQ
Sbjct: 157 YDPVIDELLDATDLVMLDLKQMNDEVHQILVGVS----NHRTLDFAR-YLQ 202
>gi|295096397|emb|CBK85487.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A +K G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYIANK 160
>gi|227872087|ref|ZP_03990461.1| [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus
F0268]
gi|227842068|gb|EEJ52324.1| [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus
F0268]
Length = 261
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 33/163 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F F GC + +C +C +
Sbjct: 29 MESFGSVDGPGTR------FIVFLQGC-----------AMRCLYCHNPDTWAFKKE-NLM 70
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+++ KEG ++GG+PLL +D + L + K+G ++T+
Sbjct: 71 TPEEVLKKAMRYQDYWGKEG-GITVSGGDPLLHIDFLLALFRLAKKKGINTCLDTSAQ-- 127
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQEL-KLVFPQVNVSPENYIG 165
S K K E+ V + +
Sbjct: 128 --------PFSNKESFYEKFLALMEVTDTVLLDIKAMDSDLHK 162
>gi|55821616|ref|YP_140058.1| pyruvate-formate lyase activating enzyme [Streptococcus
thermophilus LMG 18311]
gi|55823544|ref|YP_141985.1| pyruvate-formate lyase activating enzyme [Streptococcus
thermophilus CNRZ1066]
gi|116628329|ref|YP_820948.1| pyruvate-formate lyase activating enzyme [Streptococcus
thermophilus LMD-9]
gi|55737601|gb|AAV61243.1| pyruvate-formate lyase activating enzyme [Streptococcus
thermophilus LMG 18311]
gi|55739529|gb|AAV63170.1| pyruvate-formate lyase activating enzyme [Streptococcus
thermophilus CNRZ1066]
gi|116101606|gb|ABJ66752.1| Pyruvate-formate lyase-activating enzyme [Streptococcus
thermophilus LMD-9]
gi|312278954|gb|ADQ63611.1| Pyruvate formate-lyase 1-activating enzyme [Streptococcus
thermophilus ND03]
Length = 266
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 25/171 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC L +C++C +
Sbjct: 17 ESFGSVDGPGIR------FIVFMQGCKL-----------RCQYCHNPDTWAMKSNKAV-- 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNG-T 121
+ D++EE G + +T GGE +LQ+D L K G ++T G +
Sbjct: 58 ERTVEDVLEEALRFRHFWGEHGGITVSGGEAMLQIDFVTALFTEAKKLGIHCTLDTCGLS 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
+ A DL + +E+ + N +F ++
Sbjct: 118 YRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQYL 168
>gi|309389450|gb|ADO77330.1| pyruvate formate-lyase activating enzyme [Halanaerobium praevalens
DSM 2228]
Length = 242
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E T+ G G R VF GC L +C++C +
Sbjct: 1 MTEGYIHSLESLGTVDGPGI---RFVVF--TQGCPL-----------RCQYCHNPDTW-K 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
G + + L I + E G ++GGEP +Q + + L++ A+
Sbjct: 44 LKAGTKVSTSTLIKKIIKIKPYLEGAGGGLTISGGEPTMQPEFTLDLLKKAKAENLHTAL 103
Query: 117 ETNGTIEPPQGID---WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+T+G +E Q ++ + QEL V Q ++ + + +
Sbjct: 104 DTSGFVEIEQFKKFLAYLDLVLIDIKSFNNSIHQELTGVSNQKTLAVIELLEKAKKPYW- 162
Query: 174 QPMDGPFLEENTNLAISY 191
+ + + T+
Sbjct: 163 --VRQVIVPQITDQIAEI 178
>gi|237730866|ref|ZP_04561347.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
gi|291085629|ref|ZP_06353548.2| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
ATCC 29220]
gi|226906405|gb|EEH92323.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
gi|291070473|gb|EFE08582.1| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
ATCC 29220]
Length = 255
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 20 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 61
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 62 VDELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 121
>gi|269121318|ref|YP_003309495.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis
ATCC 33386]
gi|268615196|gb|ACZ09564.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis
ATCC 33386]
Length = 241
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 33/210 (15%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
MK Y I E F T G G F GC L +C +C
Sbjct: 1 MKGY-IHSFESFGTKDGPGIR------FVLFLQGCPL-----------RCLYCHNVDTWD 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIA 115
K ++ I + + ++GGEPLLQ + L + + A
Sbjct: 43 LKNKKYMLTPEETMHEISKVRGFIKSG--GLTVSGGEPLLQPEFILELFKLCREEKIHTA 100
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------ 169
++T+G + + + + ++ D+K + + + ++ + +
Sbjct: 101 IDTSGYLLNDRIKEVLDLTDLVLLDIKHIDPDKYQALTSVELKPTLEFMEYLSKINKPVW 160
Query: 170 -RFSLQPMDGPFLEENTNLAISYCFQNPKW 198
R+ L P E++ Y
Sbjct: 161 VRYVLVPGYT-DNEKDLKAWAKYVSNFKNV 189
>gi|237727146|ref|ZP_04557627.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D4]
gi|229434002|gb|EEO44079.1| pyruvate formate-lyase activating enzyme [Bacteroides dorei
5_1_36/D4]
Length = 242
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 28/196 (14%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E T G G R+ VF GCN +C +C
Sbjct: 1 MIRVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIDTKG 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
+ +D++ + Q K+G +GGEP LQ +PL Q L ++ I ++T
Sbjct: 45 ESTETTIDEIVRMAVSQKAFFGKKG-GVTFSGGEPTLQAKALIPLFQRLKEQSIHICIDT 103
Query: 119 NGTIEPPQGID---WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS--- 172
NG+I + + W + + ++L + + ++ + + F
Sbjct: 104 NGSIWNEEVKELLQWTDLVLLDIKEFNNVRHRQLTERSNEQTIRTAGWLEKNGKPFWLRY 163
Query: 173 -LQPMDGPFLEENTNL 187
L P F E+ L
Sbjct: 164 VLVPGYSSFEEDIRAL 179
>gi|210060915|pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
Partially Disordered Adomet
gi|210060916|pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
With Adomet And A Peptide Substrate
Length = 245
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 10 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 52 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 111
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 112 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 159
>gi|213619168|ref|ZP_03372994.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 151
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
>gi|289828913|ref|ZP_06546639.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 251
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
>gi|170681252|ref|YP_001744269.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
SMS-3-5]
gi|170518970|gb|ACB17148.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
SMS-3-5]
Length = 246
Score = 55.7 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 160
>gi|15800763|ref|NP_286777.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 EDL933]
gi|15830239|ref|NP_309012.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. Sakai]
gi|16128869|ref|NP_415422.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. MG1655]
gi|30062437|ref|NP_836608.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
str. 2457T]
gi|56479766|ref|NP_706820.2| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
str. 301]
gi|74311458|ref|YP_309877.1| pyruvate formate lyase-activating enzyme 1 [Shigella sonnei Ss046]
gi|82544640|ref|YP_408587.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii Sb227]
gi|82777578|ref|YP_403927.1| pyruvate formate lyase-activating enzyme 1 [Shigella dysenteriae
Sd197]
gi|89107752|ref|AP_001532.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. W3110]
gi|110641099|ref|YP_668829.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 536]
gi|110804910|ref|YP_688430.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 5
str. 8401]
gi|157160424|ref|YP_001457742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli HS]
gi|161486262|ref|NP_752967.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
CFT073]
gi|162138459|ref|YP_539989.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UTI89]
gi|168752115|ref|ZP_02777137.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4113]
gi|168756994|ref|ZP_02782001.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4401]
gi|168762963|ref|ZP_02787970.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4501]
gi|168769896|ref|ZP_02794903.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4486]
gi|168776246|ref|ZP_02801253.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4196]
gi|168783813|ref|ZP_02808820.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4076]
gi|168787331|ref|ZP_02812338.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC869]
gi|168801415|ref|ZP_02826422.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC508]
gi|170020696|ref|YP_001725650.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ATCC
8739]
gi|170080560|ref|YP_001729880.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. DH10B]
gi|188492165|ref|ZP_02999435.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
gi|191172048|ref|ZP_03033592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
gi|193064616|ref|ZP_03045695.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
gi|193070729|ref|ZP_03051664.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E110019]
gi|194428375|ref|ZP_03060916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
gi|194434403|ref|ZP_03066666.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1012]
gi|194438701|ref|ZP_03070788.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
gi|195939563|ref|ZP_03084945.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. EC4024]
gi|208805965|ref|ZP_03248302.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4206]
gi|208815370|ref|ZP_03256549.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4045]
gi|208822382|ref|ZP_03262701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4042]
gi|209400841|ref|YP_002269574.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4115]
gi|209918152|ref|YP_002292236.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SE11]
gi|215486027|ref|YP_002328458.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O127:H6 str. E2348/69]
gi|217324861|ref|ZP_03440945.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. TW14588]
gi|218548419|ref|YP_002382210.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
ATCC 35469]
gi|218553488|ref|YP_002386401.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI1]
gi|218557807|ref|YP_002390720.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli S88]
gi|218688742|ref|YP_002396954.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ED1a]
gi|218694375|ref|YP_002402042.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 55989]
gi|218700580|ref|YP_002408209.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI39]
gi|218704329|ref|YP_002411848.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
UMN026]
gi|238900160|ref|YP_002925956.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
BW2952]
gi|253774069|ref|YP_003036900.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161016|ref|YP_003044124.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli B str.
REL606]
gi|254792101|ref|YP_003076938.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. TW14359]
gi|256020970|ref|ZP_05434835.1| pyruvate formate lyase-activating enzyme 1 [Shigella sp. D9]
gi|256023397|ref|ZP_05437262.1| pyruvate formate lyase-activating enzyme 1 [Escherichia sp.
4_1_40B]
gi|260843152|ref|YP_003220930.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O103:H2 str. 12009]
gi|260854193|ref|YP_003228084.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O26:H11 str. 11368]
gi|260867074|ref|YP_003233476.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O111:H- str. 11128]
gi|261227405|ref|ZP_05941686.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261256172|ref|ZP_05948705.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. FRIK966]
gi|291281903|ref|YP_003498721.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. CB9615]
gi|293409279|ref|ZP_06652855.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
gi|297519591|ref|ZP_06937977.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli OP50]
gi|306812645|ref|ZP_07446838.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
gi|307137531|ref|ZP_07496887.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli H736]
gi|307311711|ref|ZP_07591351.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
gi|309784023|ref|ZP_07678667.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1617]
gi|312969032|ref|ZP_07783239.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
2362-75]
gi|312971030|ref|ZP_07785209.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
1827-70]
gi|331656972|ref|ZP_08357934.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
gi|331662315|ref|ZP_08363238.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
gi|331667278|ref|ZP_08368143.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
gi|331682409|ref|ZP_08383028.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
gi|71159621|sp|P0A9N6|PFLA_ECO57 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|71159622|sp|P0A9N5|PFLA_ECOL6 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|71159623|sp|P0A9N4|PFLA_ECOLI RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|71159624|sp|P0A9N7|PFLA_SHIFL RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|12514065|gb|AAG55387.1|AE005279_7 pyruvate formate lyase activating enzyme 1 [Escherichia coli
O157:H7 str. EDL933]
gi|42371|emb|CAA30829.1| unnamed protein product [Escherichia coli K-12]
gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. MG1655]
gi|4062478|dbj|BAA35637.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K12 substr. W3110]
gi|13360444|dbj|BAB34408.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O157:H7 str. Sakai]
gi|30040683|gb|AAP16414.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
str. 2457T]
gi|56383317|gb|AAN42527.2| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
str. 301]
gi|73854935|gb|AAZ87642.1| pyruvate formate lyase activating enzyme 1 [Shigella sonnei Ss046]
gi|81241726|gb|ABB62436.1| pyruvate formate lyase activating enzyme 1 [Shigella dysenteriae
Sd197]
gi|81246051|gb|ABB66759.1| pyruvate formate lyase activating enzyme 1 [Shigella boydii Sb227]
gi|110342691|gb|ABG68928.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 536]
gi|110614458|gb|ABF03125.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 5
str. 8401]
gi|157066104|gb|ABV05359.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli HS]
gi|169755624|gb|ACA78323.1| pyruvate formate-lyase activating enzyme [Escherichia coli ATCC
8739]
gi|169888395|gb|ACB02102.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
K-12 substr. DH10B]
gi|187768338|gb|EDU32182.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4196]
gi|188013962|gb|EDU52084.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4113]
gi|188487364|gb|EDU62467.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
gi|188998898|gb|EDU67884.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4076]
gi|189355900|gb|EDU74319.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4401]
gi|189361165|gb|EDU79584.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4486]
gi|189366831|gb|EDU85247.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4501]
gi|189372637|gb|EDU91053.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC869]
gi|189376430|gb|EDU94846.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC508]
gi|190907575|gb|EDV67170.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
gi|192927673|gb|EDV82288.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
gi|192955922|gb|EDV86390.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E110019]
gi|194413590|gb|EDX29871.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
gi|194417387|gb|EDX33493.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1012]
gi|194422333|gb|EDX38333.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
gi|208725766|gb|EDZ75367.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4206]
gi|208732018|gb|EDZ80706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4045]
gi|208737867|gb|EDZ85550.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4042]
gi|209162241|gb|ACI39674.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. EC4115]
gi|209748614|gb|ACI72614.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
gi|209748616|gb|ACI72615.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
gi|209748618|gb|ACI72616.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
gi|209911411|dbj|BAG76485.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE11]
gi|215264099|emb|CAS08443.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O127:H6 str. E2348/69]
gi|217321082|gb|EEC29506.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
O157:H7 str. TW14588]
gi|218351107|emb|CAU96811.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli 55989]
gi|218355960|emb|CAQ88576.1| pyruvate formate lyase activating enzyme 1 [Escherichia fergusonii
ATCC 35469]
gi|218360256|emb|CAQ97806.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI1]
gi|218364576|emb|CAR02262.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli S88]
gi|218370566|emb|CAR18373.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI39]
gi|218426306|emb|CAR07131.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ED1a]
gi|218431426|emb|CAR12304.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
UMN026]
gi|222032633|emb|CAP75372.1| Pyruvate formate-lyase 1-activating enzyme [Escherichia coli LF82]
gi|238863358|gb|ACR65356.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
BW2952]
gi|242376717|emb|CAQ31430.1| pyruvate formate-lyase activating enzyme [Escherichia coli
BL21(DE3)]
gi|253325113|gb|ACT29715.1| pyruvate formate-lyase activating enzyme [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972917|gb|ACT38588.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli B str.
REL606]
gi|253977131|gb|ACT42801.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
BL21(DE3)]
gi|254591501|gb|ACT70862.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O157:H7 str. TW14359]
gi|257752842|dbj|BAI24344.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O26:H11 str. 11368]
gi|257758299|dbj|BAI29796.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O103:H2 str. 12009]
gi|257763430|dbj|BAI34925.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
O111:H- str. 11128]
gi|260449952|gb|ACX40374.1| pyruvate formate-lyase activating enzyme [Escherichia coli DH1]
gi|281178033|dbj|BAI54363.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE15]
gi|281600262|gb|ADA73246.1| Pyruvate formate lyase-activating enzyme 1 [Shigella flexneri
2002017]
gi|284920753|emb|CBG33816.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 042]
gi|290761776|gb|ADD55737.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. CB9615]
gi|291469747|gb|EFF12231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
gi|305853408|gb|EFM53847.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
gi|306908266|gb|EFN38765.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
gi|307552741|gb|ADN45516.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ABU
83972]
gi|307627671|gb|ADN71975.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UM146]
gi|308928166|gb|EFP73629.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
1617]
gi|309701178|emb|CBJ00478.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli ETEC
H10407]
gi|310336791|gb|EFQ01958.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
1827-70]
gi|312286434|gb|EFR14347.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
2362-75]
gi|312945422|gb|ADR26249.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O83:H1
str. NRG 857C]
gi|313648452|gb|EFS12895.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri 2a
str. 2457T]
gi|315060187|gb|ADT74514.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli W]
gi|315135550|dbj|BAJ42709.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli DH1]
gi|315619096|gb|EFU99676.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 3431]
gi|320173243|gb|EFW48452.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC
74-1112]
gi|320182031|gb|EFW56936.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC
9905]
gi|320184266|gb|EFW59079.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC
796-83]
gi|320192612|gb|EFW67253.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. EC1212]
gi|320196604|gb|EFW71227.1| Pyruvate formate-lyase activating enzyme [Escherichia coli
WV_060327]
gi|320202298|gb|EFW76869.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B]
gi|320637770|gb|EFX07562.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. G5101]
gi|320653668|gb|EFX21742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320659813|gb|EFX27369.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
str. USDA 5905]
gi|320664282|gb|EFX31433.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H7 str. LSU-61]
gi|323157211|gb|EFZ43334.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
EPECa14]
gi|323159528|gb|EFZ45508.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
E128010]
gi|323165367|gb|EFZ51154.1| pyruvate formate-lyase 1-activating enzyme [Shigella sonnei 53G]
gi|323175475|gb|EFZ61070.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1180]
gi|323185392|gb|EFZ70756.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1357]
gi|323190722|gb|EFZ75991.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
RN587/1]
gi|323379256|gb|ADX51524.1| pyruvate formate-lyase activating enzyme [Escherichia coli KO11]
gi|323938008|gb|EGB34270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1520]
gi|323942818|gb|EGB38983.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E482]
gi|323947309|gb|EGB43317.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H120]
gi|323953391|gb|EGB49257.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H252]
gi|323958207|gb|EGB53916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H263]
gi|323962894|gb|EGB58468.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H489]
gi|323967149|gb|EGB62573.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M863]
gi|323973225|gb|EGB68417.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA007]
gi|323976711|gb|EGB71799.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
TW10509]
gi|325496842|gb|EGC94701.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
ECD227]
gi|326338203|gb|EGD62032.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. 1125]
gi|326346180|gb|EGD69918.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. 1044]
gi|327253691|gb|EGE65320.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
STEC_7v]
gi|330910682|gb|EGH39192.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86]
gi|331055220|gb|EGI27229.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
gi|331060737|gb|EGI32701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
gi|331065634|gb|EGI37527.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
gi|331080040|gb|EGI51219.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
gi|332093544|gb|EGI98602.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
3594-74]
gi|332095904|gb|EGJ00911.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
155-74]
Length = 246
Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 160
>gi|167759293|ref|ZP_02431420.1| hypothetical protein CLOSCI_01640 [Clostridium scindens ATCC 35704]
gi|167663167|gb|EDS07297.1| hypothetical protein CLOSCI_01640 [Clostridium scindens ATCC 35704]
Length = 230
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF +GCN +C FC + I K +++++ ++++ +
Sbjct: 21 TVF--TAGCNF-----------RCPFCHNASLVIDTYKNEEISLEEVYSYLKKRQGILDG 67
Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+TGGEPL+Q + + + G+ + ++TNG+
Sbjct: 68 ----VCVTGGEPLIQHGIEEFLGNIKEMGYAVKLDTNGSFP 104
>gi|330862884|emb|CBX73021.1| pyruvate formate-lyase 1-activating enzyme [Yersinia enterocolitica
W22703]
Length = 176
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRR 112
>gi|56413979|ref|YP_151054.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197362902|ref|YP_002142539.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56128236|gb|AAV77742.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197094379|emb|CAR59893.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 265
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
>gi|291616899|ref|YP_003519641.1| PflA [Pantoea ananatis LMG 20103]
gi|291151929|gb|ADD76513.1| PflA [Pantoea ananatis LMG 20103]
Length = 290
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 52/171 (30%), Gaps = 27/171 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 55 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHAGKEIT 96
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT-IE 123
V+ L + G +GGE +LQ + +A G ++TNG
Sbjct: 97 VEALMADVLSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKAEGIHTCLDTNGFVRR 156
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
ID + + + E+ + V+ N+ DF R LQ
Sbjct: 157 YDPVIDELLDATDLVMLDLKQMNDEVHQILVGVS----NHRTLDFAR-YLQ 202
>gi|16759841|ref|NP_455458.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29142386|ref|NP_805728.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|167550356|ref|ZP_02344113.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168230866|ref|ZP_02655924.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168236882|ref|ZP_02661940.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168240823|ref|ZP_02665755.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168263542|ref|ZP_02685515.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168822927|ref|ZP_02834927.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194446466|ref|YP_002040168.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194448873|ref|YP_002044962.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194468500|ref|ZP_03074484.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194735970|ref|YP_002114021.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197248756|ref|YP_002145888.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197263733|ref|ZP_03163807.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|200389762|ref|ZP_03216373.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204930015|ref|ZP_03221036.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|213161616|ref|ZP_03347326.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213417319|ref|ZP_03350463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424589|ref|ZP_03357372.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213648477|ref|ZP_03378530.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213851463|ref|ZP_03381361.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|238913256|ref|ZP_04657093.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|25285894|pir||AH0612 pyruvate formate-lyase 1 activating enzyme [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502134|emb|CAD05370.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138016|gb|AAO69577.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|194405129|gb|ACF65351.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194407177|gb|ACF67396.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194454864|gb|EDX43703.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194711472|gb|ACF90693.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197212459|gb|ACH49856.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197241988|gb|EDY24608.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197290138|gb|EDY29495.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|199602207|gb|EDZ00753.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204321009|gb|EDZ06210.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205324549|gb|EDZ12388.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205334729|gb|EDZ21493.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205339962|gb|EDZ26726.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205340734|gb|EDZ27498.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205347768|gb|EDZ34399.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|322616401|gb|EFY13310.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322619651|gb|EFY16526.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622653|gb|EFY19498.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629802|gb|EFY26577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322632476|gb|EFY29222.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322637029|gb|EFY33732.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322641610|gb|EFY38247.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646103|gb|EFY42619.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649595|gb|EFY46026.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654103|gb|EFY50426.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658635|gb|EFY54897.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663492|gb|EFY59694.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322670228|gb|EFY66368.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322671464|gb|EFY67586.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322676820|gb|EFY72887.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682745|gb|EFY78764.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686424|gb|EFY82406.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323195947|gb|EFZ81114.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199765|gb|EFZ84854.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202758|gb|EFZ87794.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209029|gb|EFZ93966.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323211505|gb|EFZ96344.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323218010|gb|EGA02725.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323219918|gb|EGA04394.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323226858|gb|EGA11041.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323229812|gb|EGA13935.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233037|gb|EGA17133.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240772|gb|EGA24814.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323243088|gb|EGA27109.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249749|gb|EGA33651.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252778|gb|EGA36616.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323255845|gb|EGA39592.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323260015|gb|EGA43643.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267984|gb|EGA51463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269831|gb|EGA53280.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
Length = 265
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
>gi|302669153|ref|YP_003832303.1| anaerobic ribonucleoside triphosphate reductase activating protein
NrdG2 [Butyrivibrio proteoclasticus B316]
gi|302396817|gb|ADL35721.1| anaerobic ribonucleoside triphosphate reductase activating protein
NrdG2 [Butyrivibrio proteoclasticus B316]
Length = 238
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GC+ +C FC + + G+ + D+ + + E
Sbjct: 21 TVF--LGGCDF-----------RCPFCHN-YELVDGSAEPVMDEDEFFSFLSK----REG 62
Query: 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L+ + + + GF + ++TNG
Sbjct: 63 ILDGVCITGGEPCLRADLANFARQIKEMGFTVKLDTNGAHP 103
>gi|161353606|ref|NP_459945.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|162139598|ref|YP_215911.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|168466557|ref|ZP_02700419.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|198246171|ref|YP_002214893.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|224582779|ref|YP_002636577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|195630908|gb|EDX49494.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197940687|gb|ACH78020.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|224467306|gb|ACN45136.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|267992705|gb|ACY87590.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|312911957|dbj|BAJ35931.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321223293|gb|EFX48362.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322713963|gb|EFZ05534.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|326622646|gb|EGE28991.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
Length = 265
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 131
>gi|312863599|ref|ZP_07723837.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
vestibularis F0396]
gi|322516171|ref|ZP_08069104.1| pyruvate formate-lyase activating enzyme [Streptococcus
vestibularis ATCC 49124]
gi|311101135|gb|EFQ59340.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
vestibularis F0396]
gi|322125347|gb|EFX96702.1| pyruvate formate-lyase activating enzyme [Streptococcus
vestibularis ATCC 49124]
Length = 266
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 30/170 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C +
Sbjct: 17 ESFGSVDGPGIR------FIVFMQGC-----------KMRCQYCHNPDTWAMESNKAV-- 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ D+++E G + +T GGE +LQ+D L K G ++T G +
Sbjct: 58 ERTVEDVLDEALRFRHFWGEHGGITVSGGEAMLQIDFVTALFTEAKKLGIHCTLDTCGFV 117
Query: 123 EPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ V+ D+K ++ K V Q N + + +
Sbjct: 118 YRNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQY 167
>gi|89072729|ref|ZP_01159294.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
sp. SKA34]
gi|89051549|gb|EAR57003.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
sp. SKA34]
Length = 246
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFLQGC-----------LMRCLYCHNRDTW-DTHGGREAT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG I
Sbjct: 53 VEELMHEAKSYRHFMNSSGGGVTASGGEAMLQPEFVRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQG 127
Sbjct: 113 HTD 115
>gi|160946256|ref|ZP_02093467.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270]
gi|158447779|gb|EDP24774.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270]
Length = 242
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC L +C +C G D +
Sbjct: 15 VDGPGIRT----IFF-LQGCPL-----------RCLYCHNPDT-QALQGGTEITPDFVLS 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
E G +GGEPLLQ ++ L + G+ ++T+G
Sbjct: 58 KAERYKTYYRDNG-GVTFSGGEPLLQGEFLAETLKLLKENGYNTCIDTSGY 107
>gi|224543792|ref|ZP_03684331.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM
15897]
gi|224523283|gb|EEF92388.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM
15897]
Length = 255
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 22/126 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F GC +C+FC K +
Sbjct: 20 ETFGLVDGPGVR------FILFLHGCPF-----------RCQFCHNPDTW-ASQKFEEWT 61
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEP 124
Q D + ++GGEPL + + + G ++T+G
Sbjct: 62 PQQALDRALRFEPY-WGKDGGITVSGGEPLVQIDFLLEFFKLAKAAGINTCIDTSGACFT 120
Query: 125 PQGIDW 130
+ +
Sbjct: 121 REEPFF 126
>gi|332093278|gb|EGI98338.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
5216-82]
Length = 246
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 160
>gi|319940982|ref|ZP_08015319.1| pyruvate formate-lyase 1-activating enzyme [Sutterella
wadsworthensis 3_1_45B]
gi|319805555|gb|EFW02350.1| pyruvate formate-lyase 1-activating enzyme [Sutterella
wadsworthensis 3_1_45B]
Length = 244
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 65/203 (32%), Gaps = 32/203 (15%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M L I E F ++ G G F F GC +C +C
Sbjct: 1 MPLGRIHSYETFGSVDGPGVR------FVVFMQGC-----------RMRCVYCHNPDTWR 43
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
+ + ++ + KEG ++GGEPLLQ+D + L + G
Sbjct: 44 IHAGEEK-SAAEVLRMALRYRPYWGKEG-GITVSGGEPLLQIDFLIELFELAKTEGINTT 101
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
++T G + W+ + + LK + P P + ++ S+
Sbjct: 102 LDTCGL-PFTKDPAWLVKFERLMKSTDLVMLD-LKHIDP-----PTHKRLTGWKNDSILA 154
Query: 176 MDGPFLEENTNLAISYCFQNPKW 198
E + I + P W
Sbjct: 155 CAQWLSEHGKPMWIRHVLV-PGW 176
>gi|296103095|ref|YP_003613241.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057554|gb|ADF62292.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 246
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 23/164 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A +K G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
P + + V+ DLK + + + N + +
Sbjct: 113 YDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKY 156
>gi|322515207|ref|ZP_08068206.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC
25976]
gi|322118817|gb|EFX91018.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC
25976]
Length = 245
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 10 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLDGGKEIS 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + + G +GGE +LQ++ +A G + ++TNG +
Sbjct: 52 VEYLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKVEGIDTCLDTNGFVRH 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ DL + ++L Q + N DF R LQ
Sbjct: 112 YSP---VVDEMLEVTDLVMLDLKQLNDEIHQDLIGVSNKRTLDFAR-YLQ 157
>gi|317047551|ref|YP_004115199.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
gi|316949168|gb|ADU68643.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
Length = 246
Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEDLMKDVLSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACRAEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK +++ N ++ + ++
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQINDDIHQILVGVSNHRTMDFARYLQKK 160
>gi|187734201|ref|YP_001880903.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii CDC
3083-94]
gi|227884133|ref|ZP_04001938.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
gi|237707110|ref|ZP_04537591.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
3_2_53FAA]
gi|293404208|ref|ZP_06648202.1| pflA [Escherichia coli FVEC1412]
gi|293414182|ref|ZP_06656831.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
gi|293433199|ref|ZP_06661627.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
gi|298379988|ref|ZP_06989593.1| pflA [Escherichia coli FVEC1302]
gi|300816995|ref|ZP_07097214.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
107-1]
gi|300823641|ref|ZP_07103768.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
119-7]
gi|300901670|ref|ZP_07119730.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
198-1]
gi|300902940|ref|ZP_07120885.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
84-1]
gi|300921063|ref|ZP_07137448.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
115-1]
gi|300929596|ref|ZP_07145058.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
187-1]
gi|300937598|ref|ZP_07152408.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
21-1]
gi|300949737|ref|ZP_07163715.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
116-1]
gi|300955451|ref|ZP_07167825.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
175-1]
gi|300978474|ref|ZP_07174289.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
45-1]
gi|300983149|ref|ZP_07176463.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
200-1]
gi|301047840|ref|ZP_07194891.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
185-1]
gi|301302491|ref|ZP_07208622.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
124-1]
gi|301325772|ref|ZP_07219222.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
78-1]
gi|301643421|ref|ZP_07243469.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
146-1]
gi|309795288|ref|ZP_07689706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
145-7]
gi|331641428|ref|ZP_08342563.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
gi|331672441|ref|ZP_08373231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
gi|331676690|ref|ZP_08377386.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
gi|26107327|gb|AAN79510.1|AE016758_114 Pyruvate formate-lyase 1 activating enzyme [Escherichia coli
CFT073]
gi|91071577|gb|ABE06458.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UTI89]
gi|187431193|gb|ACD10467.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii CDC
3083-94]
gi|226898320|gb|EEH84579.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
3_2_53FAA]
gi|227838885|gb|EEJ49351.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
gi|291324018|gb|EFE63440.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
gi|291428794|gb|EFF01819.1| pflA [Escherichia coli FVEC1412]
gi|291434240|gb|EFF07213.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
gi|298279686|gb|EFI21194.1| pflA [Escherichia coli FVEC1302]
gi|300300299|gb|EFJ56684.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
185-1]
gi|300306983|gb|EFJ61503.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
200-1]
gi|300317674|gb|EFJ67458.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
175-1]
gi|300354963|gb|EFJ70833.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
198-1]
gi|300405082|gb|EFJ88620.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
84-1]
gi|300409651|gb|EFJ93189.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
45-1]
gi|300411986|gb|EFJ95296.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
115-1]
gi|300450885|gb|EFK14505.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
116-1]
gi|300457377|gb|EFK20870.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
21-1]
gi|300462433|gb|EFK25926.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
187-1]
gi|300523841|gb|EFK44910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
119-7]
gi|300530347|gb|EFK51409.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
107-1]
gi|300842330|gb|EFK70090.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
124-1]
gi|300847444|gb|EFK75204.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
78-1]
gi|301078135|gb|EFK92941.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
146-1]
gi|308120938|gb|EFO58200.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
145-7]
gi|315257942|gb|EFU37910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
85-1]
gi|315287536|gb|EFU46947.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
110-3]
gi|315291232|gb|EFU50592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
153-1]
gi|324009847|gb|EGB79066.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
57-2]
gi|324012960|gb|EGB82179.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
60-1]
gi|324019090|gb|EGB88309.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
117-3]
gi|331038226|gb|EGI10446.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
gi|331070347|gb|EGI41712.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
gi|331075379|gb|EGI46677.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
gi|332104545|gb|EGJ07891.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9]
Length = 255
Score = 55.3 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 20 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 61
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 62 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 121
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 122 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 169
>gi|319775951|ref|YP_004138439.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
F3047]
gi|329123815|ref|ZP_08252373.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius
ATCC 11116]
gi|317450542|emb|CBY86759.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
F3047]
gi|327469302|gb|EGF14773.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius
ATCC 11116]
Length = 246
Score = 55.3 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGREIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKVEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|168179136|ref|ZP_02613800.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
NCTC 2916]
gi|182670033|gb|EDT82009.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
NCTC 2916]
Length = 232
Score = 55.3 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ +G A++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSG 104
>gi|238749780|ref|ZP_04611285.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC
43380]
gi|238712435|gb|EEQ04648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC
43380]
Length = 246
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A +K G ++TNG +
Sbjct: 53 VEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRR 112
>gi|320526814|ref|ZP_08028004.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei
F0204]
gi|320132782|gb|EFW25322.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei
F0204]
Length = 242
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F GCN +C++C + G Y
Sbjct: 9 ETFGAVDGPGVR------FIIFLKGCN-----------MRCKYCHNPDTW-EMAGGELYT 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+++ G ++GGE LLQ+D + L + +K+G ++T G
Sbjct: 51 AEEVLQKALRYKNYWVNGG-GITVSGGEALLQMDFMIELFELAHKQGIHCTLDTAGN 106
>gi|168183531|ref|ZP_02618195.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf]
gi|237796670|ref|YP_002864222.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4
str. 657]
gi|182673365|gb|EDT85326.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf]
gi|229263272|gb|ACQ54305.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4
str. 657]
Length = 232
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ +G A++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSG 104
>gi|303230017|ref|ZP_07316791.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
ACS-134-V-Col7a]
gi|302515383|gb|EFL57351.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
ACS-134-V-Col7a]
Length = 261
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYN 66
E T+ G G VF GC +C +C + +
Sbjct: 9 ETMGTVDGPGMRM---VVF--LQGCP-----------MRCAYCHNPDTWSEESQEAKFMT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ E +TGGE L+Q+D + L ++R ++T+G
Sbjct: 53 VEEIWQQYERNRQF--YTNGGITVTGGEALMQMDFVIELFTYFSERNVHTCLDTSGICFD 110
Query: 125 P 125
P
Sbjct: 111 P 111
>gi|303231037|ref|ZP_07317779.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
ACS-049-V-Sch6]
gi|302514301|gb|EFL56301.1| pyruvate formate-lyase 1-activating enzyme [Veillonella atypica
ACS-049-V-Sch6]
Length = 261
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 21/121 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYN 66
E T+ G G VF GC +C +C + +
Sbjct: 9 ETMGTVDGPGMRM---VVF--LQGCP-----------MRCAYCHNPDTWNEESQEAKFMT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ E +TGGE L+Q+D + L ++R ++T+G
Sbjct: 53 VEEIWQQYERNRQF--YTNGGITVTGGEALMQIDFVIELFTYFSERNVHTCLDTSGICFD 110
Query: 125 P 125
P
Sbjct: 111 P 111
>gi|258544998|ref|ZP_05705232.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis
ATCC 15826]
gi|258519801|gb|EEV88660.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis
ATCC 15826]
Length = 247
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 19/120 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYN 66
E T+ G G R VF GC +C +C ++ K +
Sbjct: 10 ETCGTVDGPGL---RFVVF--TQGC-----------LMRCLYCHNRDTWDMETDKSRKIT 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD+L + + + G +GGE LLQ A G ++TNG
Sbjct: 54 VDELMQQVIQYRFYLKATGGGVTASGGESLLQPEFIRDWFVACKAYGIHTCLDTNGYARH 113
>gi|154505214|ref|ZP_02041952.1| hypothetical protein RUMGNA_02727 [Ruminococcus gnavus ATCC 29149]
gi|153794412|gb|EDN76832.1| hypothetical protein RUMGNA_02727 [Ruminococcus gnavus ATCC 29149]
Length = 230
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 51/214 (23%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+ R + +C FC + + +++ + ++ + +TGG
Sbjct: 18 VACTIFTARCNFRCPFCHNASLVTHVDAAAAISEEEVFSFLAKRQGILDG----VCITGG 73
Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNGTI------------EPPQGIDWICVSPKAGCD 140
EPLLQ D I+ + + G+++ ++TNG+ +D K G
Sbjct: 74 EPLLQPDIEEFIRKVKELGYQVKLDTNGSNVLRLRRLVEQGLVDYVAMDIKNAPDKYGMT 133
Query: 141 LKIKGGQ------------------ELKLVFPQVNVSPENYIGF-----DFERFSLQ--- 174
+ I+ E + + E++ +++ LQ
Sbjct: 134 IGIEEYDMSNIFQSVDFLMSGDVPYEFRTTVVRQFHKREDFAAIGRWIKGAKQYYLQSFV 193
Query: 175 -------PMDGPFLEENTNLAISYCFQN-PKWRL 200
P + +E A+ +N P +L
Sbjct: 194 DSGDLICPGMKGYTKEIMEQALEIVKRNIPNAKL 227
>gi|37525557|ref|NP_928901.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784985|emb|CAE13905.1| pyruvate formate-lyase 1 activating enzyme (PFL-activating enzyme)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 246
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 21/122 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKDVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEELIKEATAYRHFMNASGGGVTASGGEAVLQAEFVRDWFRACHAEGIHTCLDTNGFVRR 112
Query: 125 PQ 126
Sbjct: 113 YG 114
>gi|260913766|ref|ZP_05920242.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis
ATCC 43325]
gi|260632305|gb|EEX50480.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis
ATCC 43325]
Length = 246
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 25/175 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLHGGREIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAVLQAEFVRDWFKACKDVGIHTCLDTNGFVRN 112
Query: 125 PQG--IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMD 177
+ I V+ DLK + + + N + + +R QP+
Sbjct: 113 YDHVIDELIDVTDLVLLDLKQLNDKIHQNLIGVPNKRTLEFAQYLAKRN--QPVW 165
>gi|88799468|ref|ZP_01115045.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297]
gi|88777778|gb|EAR08976.1| pyruvate formate-lyase 1 activating enzyme [Reinekea sp. MED297]
Length = 261
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 19/148 (12%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R VF GC +C++C G Y+V
Sbjct: 26 ESFGTVDGPGT---RFVVF--LQGC-----------LFRCKYCHNRDTW-DLDGGDLYSV 68
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ + I + G +TGGEP+L L + L + G ++TNG +
Sbjct: 69 TDMVEKILPFARFMDASGGGVTVTGGEPVLQAPYVALLFEKLQQHGIHTCLDTNGYVGVY 128
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVF 153
+ L IK + K
Sbjct: 129 SDEVHQMIDHTDLVMLDIKHIDDHKHHL 156
>gi|224023837|ref|ZP_03642203.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM
18228]
gi|224017059|gb|EEF75071.1| hypothetical protein BACCOPRO_00554 [Bacteroides coprophilus DSM
18228]
Length = 242
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 26/179 (14%)
Query: 3 LYSIKEIFLTL---QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + + +L G G R+ VF GCN +C +C
Sbjct: 1 MIRVH-SYESLGTYDGPGI---RLVVF--LQGCNF-----------RCLYCANPDTIDAK 43
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117
+ + +++ + Q K+G +GGEP Q +PL ++L + G I V+
Sbjct: 44 GESKETSPEEILKMAVSQKPFFGKKG-GITFSGGEPTFQARELIPLFRSLKEAGIHICVD 102
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN---VSPENYIGFDFERFSL 173
TNG+I + ++ D+K + + + N + ++ + + F L
Sbjct: 103 TNGSIWNEDVKTLLTLADLVLLDVKEFNNDRHRKLTARSNEQTLKTAAWLEENQKPFWL 161
>gi|289667004|ref|ZP_06488079.1| putative radical activating enzyme [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 136
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 21/123 (17%)
Query: 105 QALNKRGFEIAVETNGTIEPPQGID-------WICVSPKAGCDLKIKG------GQELKL 151
Q L G+++++ET+G ++ + + + ++K
Sbjct: 9 QKLCDAGYDVSLETSGALDVSAVDPRVSRVVDIKTPASGEEARNRWENLPLLTARDQIKF 68
Query: 152 VFPQVNVSPENYIGFDF------ERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
V + P LA R +Q H
Sbjct: 69 VICSRADYEWSREIVAAQALDRRCTVWFSPSKSEVSPR--QLADWIVADRLPVRFQMQLH 126
Query: 206 KFI 208
K +
Sbjct: 127 KLL 129
>gi|322807528|emb|CBZ05103.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
H04402 065]
Length = 232
Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ +G A++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTALDTSG 104
>gi|90412861|ref|ZP_01220861.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
profundum 3TCK]
gi|90326220|gb|EAS42647.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
profundum 3TCK]
Length = 246
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FIIFMQGC-----------LMRCQYCHNRDTW-DLHDGREVS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ +A G ++TNG I
Sbjct: 53 VEEIMKEAVSYRHFMKASGGGVTASGGEAMLQPEFIRDFFRAAQAEGIHTCLDTNGYIRK 112
Query: 125 PQG 127
Sbjct: 113 HTD 115
>gi|311280182|ref|YP_003942413.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
SCF1]
gi|308749377|gb|ADO49129.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
SCF1]
Length = 246
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD+L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VDELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNGFVRR 112
>gi|238757610|ref|ZP_04618794.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC
35236]
gi|238704115|gb|EEP96648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC
35236]
Length = 246
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRR 112
>gi|77411520|ref|ZP_00787864.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
CJB111]
gi|77162446|gb|EAO73413.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
CJB111]
Length = 262
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 33/192 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT- 121
+ D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 58 ERTVEDVLKEALRYKHFWGKDGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I DL + +E+ ++ N F R+
Sbjct: 118 YRATPEYHVILEKLLDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARY--------LS 169
Query: 182 EENTNLAISYCF 193
+ T + I +
Sbjct: 170 DRGTPVWIRHVL 181
>gi|312864495|ref|ZP_07724726.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus downei
F0415]
gi|311099622|gb|EFQ57835.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus downei
F0415]
Length = 266
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 30/170 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C T
Sbjct: 18 ESFGTVDGPGVR------FVVFMQGC-----------KMRCQYCHNPDTWEMETNMS--T 58
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ D++ E + ++GGE +LQ++ L +K G ++T G
Sbjct: 59 ERTVDDVLNEALRFKGYWGDTGGITVSGGEAMLQIEFVTALFTEAHKLGIHCTLDTCGFC 118
Query: 123 EPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
P + V+ DLK ++ K+V Q N + + +
Sbjct: 119 YRPTAEYHKILDKLLAVTDLVLLDLKEINPEQHKIVTRQPNKNILLFARY 168
>gi|76787669|ref|YP_330039.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
A909]
gi|76562726|gb|ABA45310.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
A909]
Length = 262
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 33/192 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT- 121
+ D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 58 ERTVEDVLKEALRYKHFWGKDGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I DL + +E+ ++ N F R+
Sbjct: 118 YRATPEYHVILEKLLDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARY--------LS 169
Query: 182 EENTNLAISYCF 193
+ T + I +
Sbjct: 170 DRGTPVWIRHVL 181
>gi|323174998|gb|EFZ60613.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli LT-68]
Length = 246
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 113 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFTKYLANK 160
>gi|187251593|ref|YP_001876075.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Elusimicrobium minutum Pei191]
gi|186971753|gb|ACC98738.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Elusimicrobium minutum Pei191]
Length = 205
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
AV GCN +C +C + YN D++ +E++
Sbjct: 18 VSAV-IFMQGCN-----------MRCPYCHNPELVYPNMLLEPYNEDEVFAFLEKRKGAL 65
Query: 82 EKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPP 125
+ V+TGGEP + + + G+++ ++TNGT+
Sbjct: 66 DG----VVVTGGEPAVHADLPEFLAKIKALGYKVKLDTNGTMPDM 106
>gi|256376543|ref|YP_003100203.1| pyruvate formate-lyase activating enzyme [Actinosynnema mirum DSM
43827]
gi|255920846|gb|ACU36357.1| pyruvate formate-lyase activating enzyme [Actinosynnema mirum DSM
43827]
Length = 281
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R VF SGC L +C +C + G +++
Sbjct: 55 VDGPGT---RFVVF--TSGCPL-----------RCLYCQNPETW-KMRDGTVVTAEEIMA 97
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
E + G ++GGEPLLQ L + + G A++T+G
Sbjct: 98 EAEPYRRFIQVAGGGFTVSGGEPLLQPVFTGELFRRAKEWGMHTALDTSGY 148
>gi|170024904|ref|YP_001721409.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
pseudotuberculosis YPIII]
gi|186894824|ref|YP_001871936.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
pseudotuberculosis PB1/+]
gi|21959685|gb|AAM86344.1|AE013882_5 pyruvate formate lyase activating enzyme 1 [Yersinia pestis KIM 10]
gi|45435898|gb|AAS61455.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
Microtus str. 91001]
gi|169751438|gb|ACA68956.1| pyruvate formate-lyase activating enzyme [Yersinia
pseudotuberculosis YPIII]
gi|186697850|gb|ACC88479.1| pyruvate formate-lyase activating enzyme [Yersinia
pseudotuberculosis PB1/+]
Length = 265
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A +K G ++TNG +
Sbjct: 72 VEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRR 131
>gi|189218652|ref|YP_001939293.1| Ribonucleotide reductase of class III (anaerobic), activating
protein [Methylacidiphilum infernorum V4]
gi|189185510|gb|ACD82695.1| Ribonucleotide reductase of class III (anaerobic), activating
protein [Methylacidiphilum infernorum V4]
Length = 232
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
AV GCN +C +C + + G + + + ++
Sbjct: 18 TAAV-IFTQGCNF-----------RCPYCYVPQLVVPENYGPLLPLAGVLEFLDS----R 61
Query: 82 EKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+++ V+TGGEP L + I + KRGF + ++TNG+
Sbjct: 62 KEKIEGVVITGGEPTLQEDLQDFIILVKKRGFLVKLDTNGSHPEI 106
>gi|51243917|ref|YP_063801.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila
LSv54]
gi|50874954|emb|CAG34794.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea
psychrophila LSv54]
Length = 206
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 25/160 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G A GCN +C FC + V+++ + E
Sbjct: 16 GVPAAIIFTQGCN-----------YRCPFCHNG-NLLPMQGSEEIEVEEVLSWLRE---- 59
Query: 81 GEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQG-------IDWIC 132
+ + V+TGGEP L I + + G++I +++NG+ ID++
Sbjct: 60 RQGKLDGVVITGGEPTLQADLGSFICQIREMGYKIKLDSNGSHPEVLEKLLDQGLIDFVA 119
Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
+ KA + +K+ + S E E
Sbjct: 120 MDVKAPAAKYSRLCG-VKVNLEHIEQSMEIIAKSGVEHLF 158
>gi|238784521|ref|ZP_04628529.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri
ATCC 43970]
gi|238714584|gb|EEQ06588.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri
ATCC 43970]
Length = 246
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRR 112
>gi|269794948|ref|YP_003314403.1| pyruvate formate-lyase 1-activating enzyme [Sanguibacter keddieii
DSM 10542]
gi|269097133|gb|ACZ21569.1| pyruvate formate-lyase 1-activating enzyme [Sanguibacter keddieii
DSM 10542]
Length = 287
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F+GC L +C +C ++ G D+L
Sbjct: 60 VDGPGTRM---TVF--FAGCPL-----------RCLYCHNPDT-MKMKDGESVTSDELLR 102
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA--LNKRGFEIAVETNGT 121
I G ++GGE L+Q G ++T+G
Sbjct: 103 RIRRYKAVFRSTGGGLTISGGEVLMQPAFAATILAGAKAEGIHTTIDTSGY 153
>gi|318606276|emb|CBY27774.1| pyruvate formate-lyase activating enzyme [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 246
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRR 112
>gi|251781842|ref|YP_002996144.1| pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390471|dbj|BAH80930.1| pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|322411188|gb|EFY02096.1| Pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|323126656|gb|ADX23953.1| Pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 287
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 30/170 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C++C T +
Sbjct: 41 ESFGSVDGPGIR------FIIFLQGC-----------KMRCQYCHNPDTWEMETNNSK-- 81
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 82 LRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFTEAKKLGIHTTLDTCGFA 141
Query: 123 EPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
P + V+ DLK ++ K+V Q N + + +
Sbjct: 142 YRPTPEYHEVLDKLLAVTDLILLDLKEIDEEQHKIVTRQPNQNILEFARY 191
>gi|150388344|ref|YP_001318393.1| glycyl-radical activating family protein [Alkaliphilus
metalliredigens QYMF]
gi|149948206|gb|ABR46734.1| glycyl-radical enzyme activating protein family [Alkaliphilus
metalliredigens QYMF]
Length = 258
Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 32/200 (16%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-------QGTKG 62
++ G G VF F GC L +C +C + G
Sbjct: 18 YSIHDGTGIRT---TVF--FKGCPL-----------RCLWCANPESQKIEIEEMGERKIG 61
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
V ++ D++ + + G L+GGEPL+Q + L++ ++ A+ET+G
Sbjct: 62 RIATVQEVLDVVSRDKMFYNRSGGGMTLSGGEPLMQPEFASALVKEAKRQDIHTAIETSG 121
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV----SPENYIGFDFERFSLQPM 176
+ I D+K Q+ V N + + + E P+
Sbjct: 122 YQQWDLLWSVIENIDTVLFDIKTMDAQQHLEVMGTSNQLILENAKRIAKMNKEIILRIPI 181
Query: 177 DG--PFLEENTNLAISYCFQ 194
N +++ +
Sbjct: 182 VPGYNDSWSNMVETVNFAKE 201
>gi|289178850|gb|ADC86096.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 311
Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L +C++C Y +D +
Sbjct: 81 SVDGPGTRM---TVF--LSGCPL-----------RCQYCQNPDTWKMRDGKPVY-LDAMV 123
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
IE E +GGE ++Q + +A + G ++T+G + +
Sbjct: 124 VKIERYKDLFEATKGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNANYSDE 183
Query: 130 WI 131
I
Sbjct: 184 MI 185
>gi|183601394|ref|ZP_02962764.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
animalis subsp. lactis HN019]
gi|219683451|ref|YP_002469834.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
animalis subsp. lactis AD011]
gi|241191106|ref|YP_002968500.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196512|ref|YP_002970067.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|183219000|gb|EDT89641.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
animalis subsp. lactis HN019]
gi|219621101|gb|ACL29258.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium
animalis subsp. lactis AD011]
gi|240249498|gb|ACS46438.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240251066|gb|ACS48005.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|295794095|gb|ADG33630.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
animalis subsp. lactis V9]
Length = 300
Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L +C++C Y +D +
Sbjct: 70 SVDGPGTRM---TVF--LSGCPL-----------RCQYCQNPDTWKMRDGKPVY-LDAMV 112
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
IE E +GGE ++Q + +A + G ++T+G + +
Sbjct: 113 VKIERYKDLFEATKGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNANYSDE 172
Query: 130 WI 131
I
Sbjct: 173 MI 174
>gi|262039689|ref|ZP_06012978.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
F0264]
gi|261746306|gb|EEY33856.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
F0264]
Length = 259
Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 54/166 (32%), Gaps = 36/166 (21%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-- 61
IF +L GEG VF F GC L +C +C T+
Sbjct: 8 IFNIQRYSLNDGEGIRT---IVF--FKGCPL-----------RCPWCSNPESQSFETEYM 51
Query: 62 -----------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALN 108
G Y VD++ + + G L+GGE L Q L++ L
Sbjct: 52 KSNVNGNIKTIGKWYTVDEIIKEALKDEVFFNTSGGGVTLSGGEVLAQGEFIEELLKELK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+ A+ET G + DLKI Q+ K +
Sbjct: 112 ENDINTAIETCGYGNINVLKKILPYVDTVFFDLKITDNQKSKEIIK 157
>gi|238763316|ref|ZP_04624280.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii
ATCC 33638]
gi|238698415|gb|EEP91168.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii
ATCC 33638]
Length = 246
Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEEGIHTCLDTNGFVRR 112
>gi|293396829|ref|ZP_06641103.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM
4582]
gi|291420300|gb|EFE93555.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM
4582]
Length = 246
Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELMKDTVSYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHQEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + + DLK + + N + + +R
Sbjct: 113 YDPVIDELLDTTDLVMLDLKQMNDDIHQNLVGVSNHRTLEFARYLAKR 160
>gi|73668569|ref|YP_304584.1| radical activating enzyme [Methanosarcina barkeri str. Fusaro]
gi|72395731|gb|AAZ70004.1| radical activating enzyme [Methanosarcina barkeri str. Fusaro]
Length = 260
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR AV F GC L +C +C + +QG + +EEQ
Sbjct: 16 WKGRAAVTIFFGGCPL-----------RCPYC-QNHPYLQGLNPVE------LEFVEEQI 57
Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V +GGEPL+Q VPL + + G I + TNG
Sbjct: 58 KESTLFVSAVVFSGGEPLMQKAIVPLAEFAREIGLAIGIHTNGCYP 103
>gi|148827317|ref|YP_001292070.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
PittGG]
gi|260582394|ref|ZP_05850186.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
NT127]
gi|148718559|gb|ABQ99686.1| pyruvate formate-lyase activating enzyme [Haemophilus influenzae
PittGG]
gi|260094545|gb|EEW78441.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
NT127]
Length = 246
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|25011510|ref|NP_735905.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
NEM316]
gi|76797662|ref|ZP_00779931.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
18RS21]
gi|24413049|emb|CAD47127.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586956|gb|EAO63445.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
18RS21]
gi|319745350|gb|EFV97664.1| pyruvate formate-lyase activating enzyme [Streptococcus agalactiae
ATCC 13813]
Length = 262
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 33/192 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT- 121
+ D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 58 ERTVEDVLKEALRYKHFWGKDGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I DL + +E+ ++ N F R+
Sbjct: 118 YRATPEYHAILEKLLDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARY--------LS 169
Query: 182 EENTNLAISYCF 193
+ T + I +
Sbjct: 170 DRGTPVWIRHVL 181
>gi|304438271|ref|ZP_07398212.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304368637|gb|EFM22321.1| pyruvate formate-lyase activating enzyme [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 251
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 24/155 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C G R
Sbjct: 12 ESFGSVDGPGIR------FIVFVQGC-----------RYRCQYCHNPETWGLGGGEERTP 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
D L + + E+ ++GGEPLLQ+ + ++ ++T G
Sbjct: 55 ADVLRQALRYRPYWKERG--GITVSGGEPLLQLPFVTEFFRLAKEQQVSTVIDTAGG-PF 111
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
+ + + +A L ++K + P + +
Sbjct: 112 TEDEPFFS-AFRALLPLTDLFLLDIKHIDPAQHRA 145
>gi|193214403|ref|YP_001995602.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Chloroherpeton thalassium ATCC 35110]
gi|193087880|gb|ACF13155.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Chloroherpeton thalassium ATCC 35110]
Length = 204
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 37/169 (21%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GCN +C +C + + G + L+ + T +
Sbjct: 20 AVVF--TQGCNF-----------RCPYCHNPELVLPEQFGKTLSP----ALVLDFLKTRK 62
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
+TGGEP LQ + +QA+ +I ++TNG +
Sbjct: 63 GRLSSVTITGGEPALQPALLDFLQAIKSIPLKIKLDTNGAFPETLEQAF----------- 111
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
L V + E Y +R P++ +E++ L ++
Sbjct: 112 ---SQNLLDFVAMDIKAPLEAY-----DRICGCPVEIEAIEKSIALILA 152
>gi|187776866|ref|ZP_02993339.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC
15579]
gi|187775525|gb|EDU39327.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC
15579]
Length = 232
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCIYCHNPDTW-DLNAGIEISSDEILK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ +G A++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKSKNQGIHTALDTSG 104
>gi|16272144|ref|NP_438347.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
Rd KW20]
gi|260580940|ref|ZP_05848764.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
RdAW]
gi|1172447|sp|P43751|PFLA_HAEIN RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 1;
AltName: Full=PFL-activating enzyme 1
gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus
influenzae Rd KW20]
gi|260092429|gb|EEW76368.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
RdAW]
Length = 246
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|309972700|gb|ADO95901.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae
R2846]
Length = 246
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|255525040|ref|ZP_05391986.1| pyruvate formate-lyase activating enzyme [Clostridium
carboxidivorans P7]
gi|296187392|ref|ZP_06855787.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
carboxidivorans P7]
gi|255511296|gb|EET87590.1| pyruvate formate-lyase activating enzyme [Clostridium
carboxidivorans P7]
gi|296047914|gb|EFG87353.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
carboxidivorans P7]
Length = 264
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 20/116 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC+ +C+FC V
Sbjct: 24 ESFGSVDGPGI---RFVIF--LKGCH-----------MRCQFCHNPDTW-DMDGAETKTV 66
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
D+L + +K G ++GGEPLLQ+D + +G + ++T+G
Sbjct: 67 DELLSQALKYKTYWKKGG-GITVSGGEPLLQIDFLIKFFTKAKAKGVHVTLDTSGN 121
>gi|51595746|ref|YP_069937.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
pseudotuberculosis IP 32953]
gi|108806669|ref|YP_650585.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
Antiqua]
gi|108812757|ref|YP_648524.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
Nepal516]
gi|145599586|ref|YP_001163662.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
Pestoides F]
gi|149366638|ref|ZP_01888672.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
CA88-4125]
gi|153946839|ref|YP_001401556.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
pseudotuberculosis IP 31758]
gi|161484775|ref|NP_670093.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis KIM 10]
gi|161511413|ref|NP_992578.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis biovar
Microtus str. 91001]
gi|162421299|ref|YP_001606121.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Angola]
gi|165924437|ref|ZP_02220269.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939007|ref|ZP_02227560.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Orientalis str. IP275]
gi|166009871|ref|ZP_02230769.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211440|ref|ZP_02237475.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400062|ref|ZP_02305580.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419547|ref|ZP_02311300.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424126|ref|ZP_02315879.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470141|ref|ZP_02334845.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis FV-1]
gi|218928529|ref|YP_002346404.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis CO92]
gi|229841350|ref|ZP_04461509.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229843455|ref|ZP_04463601.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903166|ref|ZP_04518279.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis
Nepal516]
gi|270486961|ref|ZP_06204035.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM
D27]
gi|294503371|ref|YP_003567433.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
Z176003]
gi|51589028|emb|CAH20646.1| pyruvate formate-lyase 1 activating enzyme [Yersinia
pseudotuberculosis IP 32953]
gi|108776405|gb|ABG18924.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
Nepal516]
gi|108778582|gb|ABG12640.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
Antiqua]
gi|115347140|emb|CAL20033.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CO92]
gi|145211282|gb|ABP40689.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
Pestoides F]
gi|149291012|gb|EDM41087.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
CA88-4125]
gi|152958334|gb|ABS45795.1| pyruvate formate-lyase 1-activating enzyme [Yersinia
pseudotuberculosis IP 31758]
gi|162354114|gb|ABX88062.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis Angola]
gi|165913154|gb|EDR31778.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923497|gb|EDR40629.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165991267|gb|EDR43568.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166207211|gb|EDR51691.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962288|gb|EDR58309.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050770|gb|EDR62178.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167056975|gb|EDR66738.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229678936|gb|EEO75039.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis
Nepal516]
gi|229689802|gb|EEO81863.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697716|gb|EEO87763.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|262361411|gb|ACY58132.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
D106004]
gi|262365052|gb|ACY61609.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
D182038]
gi|270335465|gb|EFA46242.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM
D27]
gi|294353830|gb|ADE64171.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
Z176003]
gi|320015759|gb|ADV99330.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 244
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 19/119 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 9 ESCGTVDGPGI---RFIVF--FQGC-----------LMRCLYCHNRDTW-DTHGGKEVTV 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
++L G +GGE +LQ + +A +K G ++TNG +
Sbjct: 52 EELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRR 110
>gi|77405768|ref|ZP_00782853.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
H36B]
gi|77175625|gb|EAO78409.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
H36B]
Length = 262
Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 33/192 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT- 121
+ D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 58 ERTVEDVLKEALRYKHFWGKDGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I DL + +E+ ++ N F R+
Sbjct: 118 YRATPEYHAILEKLLDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARY--------LS 169
Query: 182 EENTNLAISYCF 193
+ T + I +
Sbjct: 170 DRGTPVWIRHVL 181
>gi|295110857|emb|CBL24810.1| Pyruvate-formate lyase-activating enzyme [Ruminococcus obeum
A2-162]
Length = 245
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F SGC + +C+FC G +G +Y
Sbjct: 13 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDTWKMG-EGQQYTP 55
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
QL ++GGEPLLQ+D + + G ++T+
Sbjct: 56 SQLLKQALRYK-NYWGNKGGITVSGGEPLLQIDFLIEFFRMAKAEGVHTTLDTS 108
>gi|146311079|ref|YP_001176153.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter sp. 638]
gi|145317955|gb|ABP60102.1| pyruvate formate-lyase activating enzyme [Enterobacter sp. 638]
Length = 246
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNGFVRR 112
>gi|301168830|emb|CBW28421.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
10810]
Length = 246
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|255011511|ref|ZP_05283637.1| putative pyruvate formate-lyase activating enzyme [Bacteroides
fragilis 3_1_12]
gi|313149337|ref|ZP_07811530.1| pyruvate-formate lyase-activating enzyme [Bacteroides fragilis
3_1_12]
gi|313138104|gb|EFR55464.1| pyruvate-formate lyase-activating enzyme [Bacteroides fragilis
3_1_12]
Length = 261
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 40/131 (30%), Gaps = 27/131 (20%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----------VGIQGTKG 62
G G +F GC L C +C G++ G
Sbjct: 27 DGPGIRT---TIF--LKGCPL-----------HCAWCHNPEGISPQPQYMIKKGVKSICG 70
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ V++L +IE+ LTGGEPL Q D A+ET+G
Sbjct: 71 YQITVEELIAIIEKNRDIYRLNRGGITLTGGEPLFQPDFITELLEQLPDIHTAIETSGYA 130
Query: 123 EPPQGIDWICV 133
I +
Sbjct: 131 NTHTFSKVISL 141
>gi|145628477|ref|ZP_01784277.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
22.1-21]
gi|144978947|gb|EDJ88633.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
22.1-21]
Length = 229
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YNH 115
>gi|289810854|ref|ZP_06541483.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 123
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 21/116 (18%)
Query: 12 TLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
T+ G G F F GC +C +C G V+ L
Sbjct: 3 TVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEITVEDL 44
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+ G +GGE +LQ + +A K G ++TNG +
Sbjct: 45 MKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 100
>gi|145639765|ref|ZP_01795367.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
PittII]
gi|145271133|gb|EDK11048.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
PittII]
gi|309750405|gb|ADO80389.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae
R2866]
Length = 246
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YNH 115
>gi|160892066|ref|ZP_02073069.1| hypothetical protein BACUNI_04527 [Bacteroides uniformis ATCC 8492]
gi|270296322|ref|ZP_06202522.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D20]
gi|317480485|ref|ZP_07939578.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 4_1_36]
gi|156858544|gb|EDO51975.1| hypothetical protein BACUNI_04527 [Bacteroides uniformis ATCC 8492]
gi|270273726|gb|EFA19588.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D20]
gi|316903330|gb|EFV25191.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 4_1_36]
Length = 241
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 78/224 (34%), Gaps = 51/224 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GC +C +C DT I G
Sbjct: 8 ESMGTFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGTP 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
+++ + Q K+G +GGEP LQ +PL + L G I +++NG I
Sbjct: 48 TTPEEILQMAISQKAFFGKKG-GITFSGGEPTLQAEALIPLFKELKANGIHICLDSNGGI 106
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------VSPENYIGFDFERFSLQP 175
+ + ++ D+K + + + + N E + + R+ L P
Sbjct: 107 WNEKVEELFSLTDLVLLDIKQFNPERHRTLTGRSNEQTLRTAAWLEEHEHPFWLRYVLVP 166
Query: 176 MDGPFLEENTNLA------------ISYCFQNPKWRLSVQTHKF 207
EE+T L + + RL V HK+
Sbjct: 167 GY-SDSEEDTRLLGESLGKYQQIQRVEILPYH---RLGV--HKY 204
>gi|313884260|ref|ZP_07818026.1| pyruvate formate-lyase 1-activating enzyme [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620707|gb|EFR32130.1| pyruvate formate-lyase 1-activating enzyme [Eremococcus coleocola
ACS-139-V-Col8]
Length = 256
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC L +C FC G Y
Sbjct: 16 ESFGSVDGPGIR------FVTFMQGCRL-----------RCEFCHNPDTW-NTFGGHEYT 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
QL D + E ++GGEP+LQ+D + + + G ++T G
Sbjct: 58 AQQLFDEAIKYR-AFWGEKGGVTVSGGEPMLQIDFLIEYFKICKEHGVNTTLDTCG 112
>gi|212694897|ref|ZP_03303025.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855]
gi|212662575|gb|EEB23149.1| hypothetical protein BACDOR_04431 [Bacteroides dorei DSM 17855]
Length = 233
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 26/185 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T G G R+ VF GCN +C +C + +D++
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIDTKGESTETTIDEIV 46
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
+ Q K+G +GGEP LQ +PL Q L ++ I ++TNG+I + +
Sbjct: 47 RMAVSQKAFFGKKG-GVTFSGGEPTLQAKALIPLFQRLKEQSIHICIDTNGSIWNEEVKE 105
Query: 130 ---WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS----LQPMDGPFLE 182
W + + ++L + + ++ + + F L P F E
Sbjct: 106 LLQWTDLVLLDIKEFNNVRHRQLTERSNEQTIRTAGWLEKNGKPFWLRYVLVPGYSSFEE 165
Query: 183 ENTNL 187
+ L
Sbjct: 166 DIRAL 170
>gi|22537545|ref|NP_688396.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
2603V/R]
gi|22534427|gb|AAN00269.1|AE014256_1 pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
2603V/R]
Length = 262
Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 33/192 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT- 121
+ D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 58 ERTVEDVLKEALRYKHFWGKDGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I DL + +E+ ++ N F R+
Sbjct: 118 YRATPEYHAILEKLLDVTDLVLLDLKEIDSEQHKIVTRQSNKNILQFARY--------LS 169
Query: 182 EENTNLAISYCF 193
+ T + I +
Sbjct: 170 DRGTPVWIRHVL 181
>gi|145633596|ref|ZP_01789324.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
3655]
gi|229845160|ref|ZP_04465294.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
6P18H1]
gi|229847286|ref|ZP_04467389.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
7P49H1]
gi|144985802|gb|EDJ92416.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
3655]
gi|229809829|gb|EEP45552.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
7P49H1]
gi|229811871|gb|EEP47566.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
6P18H1]
Length = 246
Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKEEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YNH 115
>gi|153811927|ref|ZP_01964595.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
gi|149832061|gb|EDM87146.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
Length = 245
Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F SGC + +C+FC G +G +Y
Sbjct: 13 ESFGSVDGPGV---RYVIF--LSGC-----------AMRCQFCHNPDTWKMG-EGQQYTP 55
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
QL ++GGEPLLQ+D L + G ++T+
Sbjct: 56 SQLLKQALRYK-NYWGNKGGITVSGGEPLLQIDFLTELFRQAKAAGVHTTLDTS 108
>gi|160936896|ref|ZP_02084260.1| hypothetical protein CLOBOL_01785 [Clostridium bolteae ATCC
BAA-613]
gi|158440086|gb|EDP17833.1| hypothetical protein CLOBOL_01785 [Clostridium bolteae ATCC
BAA-613]
Length = 232
Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GRVA GCN +C FC G+ G+ Y + + I
Sbjct: 16 GRVAATIFTGGCNF-----------RCPFCHN--SGLLGSDAEEY---ECQEDILAFLEK 59
Query: 81 GEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
++ +TGGEP L I+ + G + ++TNG +
Sbjct: 60 RKRVLEGVCITGGEPTLQPDLEEFIRKVRSLGLAVKLDTNGYMP 103
>gi|139474347|ref|YP_001129063.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
str. Manfredo]
gi|134272594|emb|CAM30861.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
str. Manfredo]
Length = 263
Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC L +CR+C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFLQGCKL-----------RCRYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 58 IRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFT 117
Query: 123 EPPQGIDW 130
P
Sbjct: 118 YRPTPEYH 125
>gi|229824233|ref|ZP_04450302.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271]
gi|229786587|gb|EEP22701.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271]
Length = 279
Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC L +C FC G Y
Sbjct: 39 ESFGSVDGPGIR------FITFMQGCRL-----------RCEFCHNPDTW-ATRGGHDYT 80
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
QL D + K+G ++GGEPLLQ+D + + G +++ G
Sbjct: 81 PQQLFDEAVQYQDFWGKKG-GVTVSGGEPLLQIDFIIEYFKICKANGIHTTLDSCG 135
>gi|257052674|ref|YP_003130507.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Halorhabdus utahensis DSM 12940]
gi|256691437|gb|ACV11774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Halorhabdus utahensis DSM 12940]
Length = 228
Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
AVF +GCNL +C +C + +K + + E
Sbjct: 21 AVF--TAGCNL-----------RCPYCHNPELIEADSKHAGASTLSADEFF-ALLDDREA 66
Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
V+TGGEP L D+P + + RGF++ ++TNGT + +
Sbjct: 67 VLDGVVITGGEPTLHRDLPRFVSRIADRGFDVKLDTNGTRPAVLRETLDTGAVEYVAMDL 126
Query: 143 IKGGQELKLVFPQVNVSPENYIGF 166
+ + + E +
Sbjct: 127 KTTPDRYDELGAEAGDAVERSVEL 150
>gi|170758246|ref|YP_001788534.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A3
str. Loch Maree]
gi|169405235|gb|ACA53646.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A3
str. Loch Maree]
Length = 232
Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ +G A++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKCKSQGIHTALDTSG 104
>gi|68248784|ref|YP_247896.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
86-028NP]
gi|145635283|ref|ZP_01790986.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
PittAA]
gi|145637339|ref|ZP_01792999.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
PittHH]
gi|145641513|ref|ZP_01797091.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
R3021]
gi|68056983|gb|AAX87236.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
86-028NP]
gi|145267427|gb|EDK07428.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
PittAA]
gi|145269431|gb|EDK09374.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
PittHH]
gi|145273804|gb|EDK13672.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
22.4-21]
Length = 246
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCKYCHNRDTW-DLEGGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFRACKAEGINTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YNH 115
>gi|331646167|ref|ZP_08347270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
gi|331044919|gb|EGI17046.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
Length = 255
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 20 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 61
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 62 VEDLMKELVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR 121
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + + N + + +
Sbjct: 122 YDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK 169
>gi|237749263|ref|ZP_04579743.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
OXCC13]
gi|229380625|gb|EEO30716.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
OXCC13]
Length = 227
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 26/139 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G A +FC GC +CR+C + G G D
Sbjct: 17 FTTIDFPGRLA--AVIFC--QGCP-----------WRCRYCHNRHLLESGEAGQYSWNDT 61
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEP---- 124
L + + V +GGEPLLQ +P +++ GFE+A+ T+G
Sbjct: 62 FRWLETRRGLLDG-----VVFSGGEPLLQKQLPEAIGQIHQNGFEVALHTSGVYPERLSK 116
Query: 125 -PQGIDWICVSPKAGCDLK 142
I+W+ + KA D
Sbjct: 117 VLPLIEWVGLDIKAPFDEY 135
>gi|291517950|emb|CBK73171.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio
fibrisolvens 16/4]
Length = 244
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F + G G +GC +C FC +G G ++
Sbjct: 12 ESFGAVDGPGVR-----YLIFLNGC-----------RMRCAFCHNPETWKEGQ-GQQFTA 54
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
D+L + G ++GGEPLLQ+D + L + +G ++T G
Sbjct: 55 DELLKKALRFKPYWKNGG-GITVSGGEPLLQIDFVLDLFKKAKAQGINTCIDTAGQ 109
>gi|227500369|ref|ZP_03930431.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
tetradius ATCC 35098]
gi|227217432|gb|EEI82751.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
tetradius ATCC 35098]
Length = 239
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 26/189 (13%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF SGC L +C FC G ++++ D
Sbjct: 13 VDGPGIRT----VFF-LSGCPL-----------RCVFCHNPDTQSPNY-GRDITIEEIVD 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + G ++GGEP+ + V LI AL+K + V+T+G + +
Sbjct: 56 RAKRMKPYYKNTG-GVTISGGEPMNDGKFLVDLIDALHKENIHVTVDTSGIGDSKYYEEI 114
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVS----PENYIGFDFERFSLQPMDGPFLE--EN 184
+ D+K ++ + + + + M + E+
Sbjct: 115 AQKADLFLLDIKHYDPEKFERITKAKQDLLVKFMYQISKTNTRVWIRHVMMPQVTDTRED 174
Query: 185 TNLAISYCF 193
+ +
Sbjct: 175 MERLVEFIK 183
>gi|293402280|ref|ZP_06646418.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291304387|gb|EFE45638.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 379
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 29/158 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C FC + + + ++++ E
Sbjct: 169 STIF--TGGCN-----------MRCPFCQNADLVFLNENTSQIPTKDIIAFLKKRRSVLE 215
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----------PQGIDW 130
+TGGEPLL + ++ + + G++I ++TNG+
Sbjct: 216 G----VCITGGEPLLNDTLESFLRTIKELGYQIKLDTNGSYPKRLKELVEKKLIDYVAMD 271
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
I K + ++ + E++I ++F
Sbjct: 272 IKNCLKRYPETTGIHNFDVTPIKESAAYLMEDHIPYEF 309
>gi|289192331|ref|YP_003458272.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus sp. FS406-22]
gi|288938781|gb|ADC69536.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus sp. FS406-22]
Length = 240
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 40/176 (22%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ + GCN +C +C + V+++ + I+ +
Sbjct: 19 KASAVIFLHGCN-----------MRCPYCHN--LRFMLEHKREMTVEEIFNDIDFLFADA 65
Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
V++GGEP LQ D + + + ++GF + ++TNGT
Sbjct: 66 ------IVISGGEPTLQKDAVIEIARYAKEKGFPVKIDTNGTHPEVIEELIKN------- 112
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ V V + Y F R DG ++E IS C +N
Sbjct: 113 -------NLIDYVAIDVKCRFDRYKEFVKCR-----EDGNEIKEKILKIISLCKKN 156
>gi|218130027|ref|ZP_03458831.1| hypothetical protein BACEGG_01610 [Bacteroides eggerthii DSM 20697]
gi|217987747|gb|EEC54074.1| hypothetical protein BACEGG_01610 [Bacteroides eggerthii DSM 20697]
Length = 246
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 26/122 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GC +C +C DT I G
Sbjct: 13 ESMGTFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDSKGGIP 52
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
D++ + Q K+G +GGEP LQ +PL + L G ++TNG I
Sbjct: 53 TPADEILQMAVSQKAFFGKKG-GITFSGGEPTLQAENLIPLFKELKANGIHTCLDTNGGI 111
Query: 123 EP 124
Sbjct: 112 WN 113
>gi|94993708|ref|YP_601806.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10750]
gi|94547216|gb|ABF37262.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10750]
Length = 287
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC L +C++C T +
Sbjct: 41 ESFGSVDGPGIR------FIIFLQGCKL-----------RCQYCHNPDTWEMETNNSK-- 81
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 82 IRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFT 141
Query: 123 EPPQGIDW 130
P
Sbjct: 142 YRPTPEYH 149
>gi|50913690|ref|YP_059662.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10394]
gi|50902764|gb|AAT86479.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10394]
Length = 287
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC L +C++C T +
Sbjct: 41 ESFGSVDGPGIR------FIIFLQGCKL-----------RCQYCHNPDTWEMETNNSK-- 81
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 82 IRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFT 141
Query: 123 EPPQGIDW 130
P
Sbjct: 142 YRPTPEYH 149
>gi|19745536|ref|NP_606672.1| putative pyruvate-formatelyase activating enzyme [Streptococcus
pyogenes MGAS8232]
gi|71902973|ref|YP_279776.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS6180]
gi|71910132|ref|YP_281682.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS5005]
gi|94989822|ref|YP_597922.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10270]
gi|209558873|ref|YP_002285345.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
NZ131]
gi|306827942|ref|ZP_07461209.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
ATCC 10782]
gi|19747656|gb|AAL97171.1| putative pyruvate-formatelyase activating enzyme [Streptococcus
pyogenes MGAS8232]
gi|71802068|gb|AAX71421.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS6180]
gi|71852914|gb|AAZ50937.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS5005]
gi|94543330|gb|ABF33378.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10270]
gi|209540074|gb|ACI60650.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
NZ131]
gi|304429861|gb|EFM32903.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
ATCC 10782]
Length = 287
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC L +C++C T +
Sbjct: 41 ESFGSVDGPGIR------FIIFLQGCKL-----------RCQYCHNPDTWEMETNNSK-- 81
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 82 IRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFT 141
Query: 123 EPPQGIDW 130
P
Sbjct: 142 YRPTPEYH 149
>gi|227503993|ref|ZP_03934042.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
striatum ATCC 6940]
gi|227199387|gb|EEI79435.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
striatum ATCC 6940]
Length = 289
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 35/170 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E+ ++ G G +F SGC L +C++C ++ G +
Sbjct: 56 ELVTSVDGPGTRM---TMFM--SGCPL-----------RCQYCHNPDT-MEMKVGTLERI 98
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ + I+ + G ++GGEPL + +++ ++ G ++T+G +
Sbjct: 99 EDVVKRIKRYKPIFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGFL--- 155
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
G L+ + + + LV V E R LQP
Sbjct: 156 ------------GSRLRDEDLENIDLVLLDVKSGDEETYKL-VTRRELQP 192
>gi|329767660|ref|ZP_08259180.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
M341]
gi|328839087|gb|EGF88673.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
M341]
Length = 265
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/197 (21%), Positives = 64/197 (32%), Gaps = 30/197 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F + G G R VF F GC +C++C +
Sbjct: 24 VESFGNVDGPGI---RYVVF--FQGC-----------MLRCKYCHNPDTWKMHNPDAKVM 67
Query: 66 NVDQLADLIEEQWITGEKE-GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN-GT 121
VDQL I + E G ++GGE LLQ+D + L + L K G V+T G
Sbjct: 68 TVDQLTKEIVKYRDFFEASEGGGVTVSGGESLLQIDFILELFRELKKIGINTCVDTCGGF 127
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
++ + + DL + + + N F F
Sbjct: 128 YVNAPSMNEKVLELISLTDLFLVDIKHIDDEHHMRLTKRTNKNIIQFTNF--------LS 179
Query: 182 EENTNLAISYCFQNPKW 198
E + I + PKW
Sbjct: 180 EHGAKMWIRHVLV-PKW 195
>gi|29350145|ref|NP_813648.1| pyruvate formate-lyase activating enzyme [Bacteroides
thetaiotaomicron VPI-5482]
gi|29342057|gb|AAO79842.1| pyruvate formate-lyase activating enzyme [Bacteroides
thetaiotaomicron VPI-5482]
Length = 242
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
Query: 2 KLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVG 56
+ ++ E T G G R+ VF GCN +C +C DT
Sbjct: 1 MMINVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT---- 40
Query: 57 IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEI 114
I G G +++ + Q K G +GGEP Q VPL++ L +RG +
Sbjct: 41 IAGKGGTPTPPEEIVRMAMSQRPFFGKRG-GITFSGGEPTFQAKALVPLVRELKERGIHV 99
Query: 115 AVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE----- 169
+++NG + + ++ D+K + + + N + E
Sbjct: 100 CLDSNGGLWNEDVEELFKLTDLVLLDIKEFNPNRHQTLTGRSNEQTIRTAAWLEEQGKPF 159
Query: 170 --RFSLQPMDGPFLEENTNL 187
R+ L P F E+ L
Sbjct: 160 WLRYVLVPGYSDFEEDIRAL 179
>gi|238792408|ref|ZP_04636042.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia
ATCC 29909]
gi|238728334|gb|EEQ19854.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia
ATCC 29909]
Length = 246
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A ++ G ++TNG +
Sbjct: 53 VEELVKEAITYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHEVGIHTCLDTNGFVRR 112
>gi|94987948|ref|YP_596049.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS9429]
gi|94541456|gb|ABF31505.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS9429]
Length = 287
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC L +C++C T +
Sbjct: 41 ESFGSVDGPGIR------FIIFLQGCKL-----------RCQYCHNPDTWEMETNNSK-- 81
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 82 IRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFT 141
Query: 123 EPPQGIDW 130
P
Sbjct: 142 YRPTPEYH 149
>gi|85859089|ref|YP_461291.1| pyruvate formate-lyase activating enzyme [Syntrophus aciditrophicus
SB]
gi|85722180|gb|ABC77123.1| pyruvate formate-lyase activating enzyme [Syntrophus aciditrophicus
SB]
Length = 251
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VFC GCN +C +C + Y I
Sbjct: 39 AVVFC--QGCNF-----------RCSYCHNP----ELVNPVLYTECNPEAEILSFLEKRV 81
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+TGGEP +Q D+P + L RG+ + ++TNG++
Sbjct: 82 GRLDAVTVTGGEPTIQKDLPSFLAWLKCRGYLVKLDTNGSMP 123
>gi|282901591|ref|ZP_06309510.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Cylindrospermopsis raciborskii CS-505]
gi|281193517|gb|EFA68495.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Cylindrospermopsis raciborskii CS-505]
Length = 248
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R +F GC +C +C G V
Sbjct: 16 ETCGTVDGPGI---RFVIF--TQGC-----------LLRCLYCHNPDTR-DMKTGKETTV 58
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+L IE+ + G ++GGEPLLQ + + + K A++T+G
Sbjct: 59 GELVTEIEKYRSYMKFTGGGVTISGGEPLLQPEFVREVFRQCQKLNIHTALDTSGF 114
>gi|77413342|ref|ZP_00789536.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
515]
gi|77160584|gb|EAO71701.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
515]
Length = 262
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 33/192 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT- 121
+ D+++E G+ ++GGE +LQ+ L K G ++T G
Sbjct: 58 ERTVEDVLKEALRYKHFWGKDGGITVSGGEAMLQIAFITALFIEAKKLGIHTTLDTCGFA 117
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
I DL + +E+ ++ N F R+
Sbjct: 118 YRATPEYHAILEKLLDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARY--------LS 169
Query: 182 EENTNLAISYCF 193
+ T + I +
Sbjct: 170 DRGTPVWIRHVL 181
>gi|229895828|ref|ZP_04510998.1| Pyruvate formate-lyase activating enzyme [Yersinia pestis Pestoides
A]
gi|229700751|gb|EEO88780.1| Pyruvate formate-lyase activating enzyme [Yersinia pestis Pestoides
A]
Length = 136
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 19/119 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 30 ESCGTVDGPGI---RFIVF--FQGC-----------LMRCLYCHNRDTW-DTHGGKEVTV 72
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
++L G +GGE +LQ + +A +K G ++TNG +
Sbjct: 73 EELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHKEGIHTCLDTNGFVRR 131
>gi|323144590|ref|ZP_08079178.1| pyruvate formate-lyase 1-activating enzyme [Succinatimonas hippei
YIT 12066]
gi|322415599|gb|EFY06345.1| pyruvate formate-lyase 1-activating enzyme [Succinatimonas hippei
YIT 12066]
Length = 251
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ 58
M I E F ++ G G R +F GC +C++C +
Sbjct: 1 MLTGRIHSFETFGSVDGPGV---RFVIFM--QGC-----------RMRCKYCHNPDSW-K 43
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
G D++ + + ++GGEPLLQ+D L + K G +
Sbjct: 44 INSGEEKTSDEVLNYALRYR-NYWGKDGGITVSGGEPLLQIDFITELFKKAKKEGVHTTI 102
Query: 117 ET 118
+T
Sbjct: 103 DT 104
>gi|323342337|ref|ZP_08082569.1| pyruvate formate-lyase activating enzyme [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463449|gb|EFY08643.1| pyruvate formate-lyase activating enzyme [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 247
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 53/166 (31%), Gaps = 23/166 (13%)
Query: 10 FLT---LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
F T + G G F SGC L +C FC + +
Sbjct: 12 FETMGMVDGPGIRT---IAF--LSGCPL-----------RCLFCHNPDMW-KTDPEDAIT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD+L D + E GGEPL Q ++A G ++T+G P
Sbjct: 55 VDELMDKLRRFKPYFG-EDGGVTFCGGEPLNQPEFLYEAMKACKAEGISTCLDTSGFGRP 113
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
D + V+ D+K ++ + + ++ E
Sbjct: 114 DTFDDILSVTDTILYDIKGLEEKKYREMTSAPIRVTHQFLEKAQEH 159
>gi|77920322|ref|YP_358137.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
DSM 2380]
gi|77546405|gb|ABA89967.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
DSM 2380]
Length = 231
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF F GCNL C FC + + Y ++ L + +E++ +
Sbjct: 22 VF--FGGCNLS-----------CPFCHNPDLVQAPDRLPDYPLEPLFEELEQRRSFIDG- 67
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
V++GGEP L +P ++ + + G + ++TNG +
Sbjct: 68 ---VVISGGEPTLYPDLIPFMRRIKQLGLMVKLDTNGLLPDI 106
>gi|269976907|ref|ZP_06183881.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
28-1]
gi|307701157|ref|ZP_07638179.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
FB024-16]
gi|269934738|gb|EEZ91298.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
28-1]
gi|307613551|gb|EFN92798.1| pyruvate formate-lyase 1-activating enzyme [Mobiluncus mulieris
FB024-16]
Length = 263
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 30/196 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ VF +GC L +C +C +Q +G D L D
Sbjct: 36 VDGPGT---RLTVF--LAGCPL-----------RCVYCHNPDT-LQMREGTPVLADDLLD 78
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDW 130
I + G +GGEP++Q + G ++T+G +
Sbjct: 79 KILRYKAVYQATGGGVTFSGGEPMMQPMFLKRLLRGAKANGVHTNIDTSGFLGANFSDQD 138
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEE 183
+ + D+K + + + ++ FE RF P +
Sbjct: 139 LELLDMVMLDVKSGNPDTYRKITSRPLQPTIDFGQRLFEAGIPVWIRFVAVPGWT-DDPD 197
Query: 184 NTNLAISYCFQNPKWR 199
N + W+
Sbjct: 198 NVSRVADIVA---PWK 210
>gi|227876187|ref|ZP_03994303.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
mulieris ATCC 35243]
gi|306819463|ref|ZP_07453170.1| pyruvate formate-lyase activating enzyme [Mobiluncus mulieris ATCC
35239]
gi|227843148|gb|EEJ53341.1| [formate-C-acetyltransferase]-activating enzyme [Mobiluncus
mulieris ATCC 35243]
gi|304647755|gb|EFM45073.1| pyruvate formate-lyase activating enzyme [Mobiluncus mulieris ATCC
35239]
Length = 302
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 30/196 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ VF +GC L +C +C +Q +G D L D
Sbjct: 75 VDGPGT---RLTVF--LAGCPL-----------RCVYCHNPDT-LQMREGTPVLADDLLD 117
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDW 130
I + G +GGEP++Q + G ++T+G +
Sbjct: 118 KILRYKAVYQATGGGVTFSGGEPMMQPMFLKRLLRGAKANGVHTNIDTSGFLGANFSDQD 177
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEE 183
+ + D+K + + + ++ FE RF P +
Sbjct: 178 LELLDMVMLDVKSGNPDTYRKITSRPLQPTIDFGQRLFEAGIPVWIRFVAVPGWT-DDPD 236
Query: 184 NTNLAISYCFQNPKWR 199
N + W+
Sbjct: 237 NVSRVADIVA---PWK 249
>gi|270261183|ref|ZP_06189456.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13]
gi|270044667|gb|EFA17758.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13]
Length = 246
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A + G ++TNG +
Sbjct: 53 VEELMKDTVAYRHFMNASGGGVTASGGEAILQAEFVRDWFRACQQEGINTCLDTNGFVRR 112
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + + DLK + + N ++ + +R
Sbjct: 113 YDPVIDELLDATDLVMLDLKQMNDDIHQNLVGVSNHRTLDFARYLAKR 160
>gi|237808650|ref|YP_002893090.1| pyruvate formate lyase II activase [Tolumonas auensis DSM 9187]
gi|237500911|gb|ACQ93504.1| glycyl-radical enzyme activating protein family [Tolumonas auensis
DSM 9187]
Length = 287
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 31/173 (17%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRL--------SAQCRF 49
M+ YS+ G G VF GC L W + R A+C
Sbjct: 22 MQRYSLN------DGTGIRT---VVF--LKGCPLACPWCANPESRSHKVEYVIREAKCIH 70
Query: 50 CDTDFVGIQGTK-------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VD 100
CD ++ G VD++ +++ + ++GGE L Q
Sbjct: 71 CDICPKTVEDCPSGAYERIGTDMTVDEVMKELKKDAVFYFTSNGGVTISGGEVLAQAPFA 130
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
+ L++ L G A+ET G Q + + + D KI + K +
Sbjct: 131 IELLKRLKAIGIRTAIETTGFGSRTQLLKMAALCDEVLYDFKIMDAAKAKEII 183
>gi|15674526|ref|NP_268700.1| putative pyruvate formate-lyase activating protein [Streptococcus
pyogenes M1 GAS]
gi|21909813|ref|NP_664081.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes MGAS315]
gi|28896494|ref|NP_802844.1| pyruvate-formate lyase activating enzyme [Streptococcus pyogenes
SSI-1]
gi|13621630|gb|AAK33421.1| putative pyruvate-formate lyase activating enzyme [Streptococcus
pyogenes M1 GAS]
gi|21903999|gb|AAM78884.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes MGAS315]
gi|28811748|dbj|BAC64677.1| putative pyruvate-formate lyase activating enzyme [Streptococcus
pyogenes SSI-1]
Length = 263
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC L +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFLQGCKL-----------RCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 58 IRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFT 117
Query: 123 EPPQGIDW 130
P
Sbjct: 118 YRPTPEYH 125
>gi|221194628|ref|ZP_03567685.1| pyruvate formate-lyase 1-activating enzyme [Atopobium rimae ATCC
49626]
gi|221185532|gb|EEE17922.1| pyruvate formate-lyase 1-activating enzyme [Atopobium rimae ATCC
49626]
Length = 273
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 24/127 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R+ VF GC +C +C G + +V
Sbjct: 31 ETFGTVDGPGT---RLVVFM--QGCP-----------MRCAYCHNPDTWKFGIGHEK-SV 73
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-----DVPLIQALNKRGFEIAVETNGTI 122
+ L + TGGEPL Q K ++++G
Sbjct: 74 ADVLALYDRNRPF--YRKGGITATGGEPLAQPAFVGALFEAAHTDPKGHIHTCLDSSGIT 131
Query: 123 EPPQGID 129
P +
Sbjct: 132 YDPHHPE 138
>gi|290968352|ref|ZP_06559893.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
type_1 str. 28L]
gi|290781627|gb|EFD94214.1| pyruvate formate-lyase 1-activating enzyme [Megasphaera genomosp.
type_1 str. 28L]
Length = 279
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 26/119 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +CR+C
Sbjct: 13 ESFGAVDGPGVR------FIVFLQGCH-----------MRCRYCHNPETWACSGG----T 51
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
V D+ ++ G ++GGE LLQ++ L + G A++T G
Sbjct: 52 VRTAEDVFKQALRYRSYWKNGGGITVSGGEALLQMEFVTELFRLAKAEGIHTAIDTAGQ 110
>gi|294816319|ref|ZP_06774962.1| Metallo cofactor biosynthesis protein [Streptomyces clavuligerus
ATCC 27064]
gi|326444650|ref|ZP_08219384.1| metallo cofactor biosynthesis protein [Streptomyces clavuligerus
ATCC 27064]
gi|294328918|gb|EFG10561.1| Metallo cofactor biosynthesis protein [Streptomyces clavuligerus
ATCC 27064]
Length = 492
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C +C + + G + + L+++ + R +L
Sbjct: 109 GCNL-----------RCPYC---YASSEKCLPGELSPAESLALVDQI---ADMGARTLIL 151
Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG--------IDWICVSPKAGCDL 141
TGGEP+L+ D+ + + +RG + + TNGT+ + VS G
Sbjct: 152 TGGEPMLRKDLFDVAEHARERGLSVNMITNGTMIRKPETARRIADLFALVTVSIDGGTAE 211
Query: 142 KIKGGQ 147
+ +
Sbjct: 212 LHERTR 217
>gi|254391279|ref|ZP_05006484.1| radical SAM domain-containing protein [Streptomyces clavuligerus
ATCC 27064]
gi|197704971|gb|EDY50783.1| radical SAM domain-containing protein [Streptomyces clavuligerus
ATCC 27064]
Length = 408
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C +C + + G + + L+++ + R +L
Sbjct: 25 GCNL-----------RCPYC---YASSEKCLPGELSPAESLALVDQI---ADMGARTLIL 67
Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQG--------IDWICVSPKAGCDL 141
TGGEP+L+ D+ + + +RG + + TNGT+ + VS G
Sbjct: 68 TGGEPMLRKDLFDVAEHARERGLSVNMITNGTMIRKPETARRIADLFALVTVSIDGGTAE 127
Query: 142 KIKGGQ 147
+ +
Sbjct: 128 LHERTR 133
>gi|238922271|ref|YP_002935785.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC
27750]
gi|238873943|gb|ACR73651.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC
27750]
Length = 259
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 39/193 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G R VF GC+ +CR+C + G
Sbjct: 18 VESFGSVDGPGV---RYIVF--LKGCH-----------MRCRYCHNPETW-KEEGGTLET 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
++ D + G ++GGE LLQ+ L + K G ++T+G
Sbjct: 61 AQEVFDKAYRYRNYWKNGG-GITVSGGEALLQMGFVTELFEIAKKNGVHTTLDTSGN--- 116
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
++ + ++ + ++ + + ++ + G +
Sbjct: 117 -------------PFKMEPEYLEKFDRLMAVTDLFLLDIKEINDDKHK--DLTGWTNKNI 161
Query: 185 TNLAISYCFQNPK 197
+LA Y + K
Sbjct: 162 LDLA-KYLSDHNK 173
>gi|308234714|ref|ZP_07665451.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis
ATCC 14018]
gi|311114518|ref|YP_003985739.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis
ATCC 14019]
gi|310946012|gb|ADP38716.1| pyruvate formate-lyase activating enzyme [Gardnerella vaginalis
ATCC 14019]
Length = 293
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 27/190 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + G +GGE ++Q + +A + G ++T+G + +
Sbjct: 107 KKVDRYQSLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDE 166
Query: 130 WIC------VSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
I + K+G + K L + RF L P E
Sbjct: 167 MIDDIDLCLLDVKSGIEETYKKVTGGLLQPTIDFGQRLAKAGKKIWVRFVLVPG-LTDSE 225
Query: 183 ENTNLAISYC 192
EN C
Sbjct: 226 ENVEKVAEIC 235
>gi|307693876|ref|ZP_07636113.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ruminococcaceae bacterium D16]
Length = 230
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GC+ +C FC + + N ++L ++++ +
Sbjct: 21 TVF--LGGCDF-----------RCPFCHNGELVL-SPAPAEMNQEELLAFLKKRQGLLDG 66
Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
+TGGEPLL+ D+P L++A+ G+ + ++TNG+
Sbjct: 67 ----VCITGGEPLLRPDLPQLLEAVKALGYPVKLDTNGSHPR 104
>gi|325262719|ref|ZP_08129455.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. D5]
gi|324031813|gb|EGB93092.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. D5]
Length = 257
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F SGC + +C+FC G +Y
Sbjct: 15 ESFGSVDGPGV---RYIIFM--SGC-----------AMRCQFCHNPDTW-NMQSGTQYTA 57
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
D+L + ++GGEPLLQ+D L Q G ++T+G
Sbjct: 58 DELLKQAVKYRSY-WGSKGGITVSGGEPLLQIDFLTELFQKAKAEGIHTTLDTSGN 112
>gi|317132608|ref|YP_004091922.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense
YUAN-3]
gi|315470587|gb|ADU27191.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense
YUAN-3]
Length = 258
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 42/122 (34%), Gaps = 23/122 (18%)
Query: 10 FLTL---QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
F +L G G R VF GC L C +C + G
Sbjct: 24 FQSLGAVDGPGL---RAVVFM--QGCPLR-----------CAYCHNPDTWL-ADGGEETT 66
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
L + I K G ++GGEPLLQ L L + G A++T+G +P
Sbjct: 67 AQALFEKILRYRPYFGKTG-GVTVSGGEPLLQWRFVAGLFSLLREAGVHTALDTSGVGDP 125
Query: 125 PQ 126
Sbjct: 126 AG 127
>gi|261339237|ref|ZP_05967095.1| hypothetical protein ENTCAN_05472 [Enterobacter cancerogenus ATCC
35316]
gi|288319093|gb|EFC58031.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter
cancerogenus ATCC 35316]
Length = 246
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 11 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACRKEGIHTCLDTNGFVRR 112
>gi|222152595|ref|YP_002561770.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
0140J]
gi|222113406|emb|CAR41070.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
0140J]
Length = 263
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 25/171 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T R
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNKSR-- 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
++D+++E G+ +T GGE +LQ+D L K G ++T G
Sbjct: 58 ERTVSDVLKEALQYRHFWGKNGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFA 117
Query: 123 EPP-QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
P I A DL + +E+ ++ N F +
Sbjct: 118 YRPTPEYHQILDKLLAVTDLILLDLKEIDEEQHKIVTRQPNKNILLFAHYL 168
>gi|225849855|ref|YP_002730089.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Persephonella marina EX-H1]
gi|225646311|gb|ACO04497.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Persephonella marina EX-H1]
Length = 231
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCNL +C +C + + G +D++ +E +
Sbjct: 21 AVIFV--QGCNL-----------RCPYCHNRHLVLPEYFGYTIGIDEVFRFLES----RK 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
K V++GGEP + I+ + + G+ + ++TNGT
Sbjct: 64 KMIEGIVISGGEPTIYEGIKDFIKKIKEFGYLVKLDTNGTNP 105
>gi|294055622|ref|YP_003549280.1| pyruvate formate-lyase activating enzyme [Coraliomargarita
akajimensis DSM 45221]
gi|293614955|gb|ADE55110.1| pyruvate formate-lyase activating enzyme [Coraliomargarita
akajimensis DSM 45221]
Length = 262
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G +GC L +C +C + +
Sbjct: 30 VETCGTVDGPGLR-----YVLFLNGCPL-----------RCMYCHNPDAQGKPHGEQKSP 73
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
+ D+I+ + + ++GGEPL+Q + + G ++T+G +
Sbjct: 74 ETVIEDVIKYRNFIKDGG---LTISGGEPLMQPQFVEETFKLAKEAGLHTTLDTSGFLGH 130
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ + + D+K K V
Sbjct: 131 KASDELLDNTDLVLLDIKSWSPLTYKYV 158
>gi|20088970|ref|NP_615045.1| radical activating enzyme [Methanosarcina acetivorans C2A]
gi|19913819|gb|AAM03525.1| radical activating enzyme [Methanosarcina acetivorans C2A]
Length = 264
Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
G+ AV F GC L +C +C ++ ++G D ++EQ
Sbjct: 20 WTGKSAVTIFFRGCPL-----------RCPYC-QNYPYLEGAGLVE------LDFLKEQI 61
Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+ V +GGEPL+Q +PL + G + V TNG
Sbjct: 62 KISKPFVSAVVFSGGEPLMQEAIIPLAEFAKILGLAVGVHTNGCYP 107
>gi|283768557|ref|ZP_06341469.1| pyruvate formate-lyase 1-activating enzyme [Bulleidia extructa
W1219]
gi|283104949|gb|EFC06321.1| pyruvate formate-lyase 1-activating enzyme [Bulleidia extructa
W1219]
Length = 243
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 25/135 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M I E F + G G F F GC +C +C
Sbjct: 1 MTKGYIHSFESFGAVDGPGVR------FIVFMQGCP-----------MRCLYCHNPETW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIA 115
+ +G + +++ + G ++GGE L + + L + +K
Sbjct: 43 KFKQGMEMSAEEVFRKAIRYQSYWKNGG-GITVSGGEALAQIDFLIELFEICHKHHIHTT 101
Query: 116 VETNGTIEPPQGIDW 130
++T+G + +W
Sbjct: 102 LDTSGN-PYTKNPEW 115
>gi|255324305|ref|ZP_05365426.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium
tuberculostearicum SK141]
gi|255298635|gb|EET77931.1| pyruvate formate-lyase 1-activating enzyme [Corynebacterium
tuberculostearicum SK141]
Length = 289
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F SGC L +C++C + G V+ +
Sbjct: 61 VDGPGTRM---TMFM--SGCPL-----------RCQYCHNPDTW-EMKTGTLERVEDVVK 103
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT------IEP 124
I+ G ++GGEPL L +++ ++ G ++T G E
Sbjct: 104 RIKRYKPIFNASGGGLTISGGEPLFQLSFTRRVLKEVHDAGIHTTIDTAGYLGARLRDED 163
Query: 125 PQGIDWICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
ID + + K+G + + +EL+ + + + RF + P D
Sbjct: 164 LDNIDLVLLDVKSGDEETYRKVTQRELQPTLDFGDRLNK-MGKAVWIRFVVVP-DLTDSP 221
Query: 183 ENTNLAISYCFQNPKWR 199
EN + +W+
Sbjct: 222 ENVENVANIVA---RWK 235
>gi|311741220|ref|ZP_07715044.1| pyruvate formate-lyase activating enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303390|gb|EFQ79469.1| pyruvate formate-lyase activating enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 289
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F SGC L +C++C + G V+ +
Sbjct: 61 VDGPGTRM---TMFM--SGCPL-----------RCQYCHNPDTW-EMKTGTLERVEDVVK 103
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT------IEP 124
I+ G ++GGEPL L +++ ++ G ++T G E
Sbjct: 104 RIKRYKPIFNASGGGLTISGGEPLFQLSFTRRVLKEVHDAGIHTTIDTAGYLGARLRDED 163
Query: 125 PQGIDWICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
ID + + K+G + + +EL+ + + + RF + P D
Sbjct: 164 LDNIDLVLLDVKSGDEETYRKVTQRELQPTLDFGDRLNK-MGKAVWIRFVVVP-DLTDSP 221
Query: 183 ENTNLAISYCFQNPKWR 199
EN + +W+
Sbjct: 222 ENVENVANIVA---RWK 235
>gi|331002131|ref|ZP_08325650.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330411225|gb|EGG90641.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 242
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F + G G R VF GC +C+FC
Sbjct: 11 ETFGLVDGPGV---RFVVFV--QGCP-----------MRCQFCHNPDTWSTNEN-QVLTA 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
++ + K+ ++GGEPLLQ+D L + + G ++T G
Sbjct: 54 QEVFEKAIRYRPY-WKDHGGITVSGGEPLLQIDFVTELFKICKENGVNTCLDTAG 107
>gi|260892784|ref|YP_003238881.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ammonifex degensii KC4]
gi|260864925|gb|ACX52031.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ammonifex degensii KC4]
Length = 208
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 20/106 (18%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
G+ A VF R GCN +C +C RY + +
Sbjct: 16 GKPAAVVFTR--GCNF-----------RCPWCHNP----GLVDPARYVPEVPLGEVLGFL 58
Query: 79 ITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
K V++GGEP VP ++AL G+ + ++TNG+
Sbjct: 59 ERRRKYLDAVVVSGGEPTVQGDLVPFLRALKGMGYLVKLDTNGSNP 104
>gi|283783347|ref|YP_003374101.1| pyruvate formate-lyase 1-activating enzyme [Gardnerella vaginalis
409-05]
gi|283442086|gb|ADB14552.1| pyruvate formate-lyase 1-activating enzyme [Gardnerella vaginalis
409-05]
Length = 293
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 27/190 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + G +GGE ++Q + +A + G ++T+G + +
Sbjct: 107 KKVDRYQSLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDE 166
Query: 130 WIC------VSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
I + K+G + K L + RF L P E
Sbjct: 167 MIEDIDLCLLDVKSGTEETYKKVTGGLLQPTIDFGQRLAKAGKKIWVRFVLVPG-LTDSE 225
Query: 183 ENTNLAISYC 192
EN C
Sbjct: 226 ENVEKVAEIC 235
>gi|158319999|ref|YP_001512506.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140198|gb|ABW18510.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
Length = 242
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 21/145 (14%)
Query: 2 KLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
++ +K I F + G G +F GCNL C +C
Sbjct: 6 QVLPVKGIIPFANVDGSGNRT---TIFV--QGCNLN-----------CIYCHNPETIQLP 49
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
+ + +LI R ++GGE + D V L + + K G V+
Sbjct: 50 CSETTHTNYTVEELIT-LLKQYSPYIRGITVSGGEATIYSDFLVELFKEVKKLGITCYVD 108
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLK 142
TNG +D I + K D+K
Sbjct: 109 TNGIFNKDHKLDLIEATDKFLFDIK 133
>gi|54309906|ref|YP_130926.1| pyruvate formate lyase-activating enzyme 1 [Photobacterium
profundum SS9]
gi|46914345|emb|CAG21124.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
profundum SS9]
Length = 246
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FIIFMQGC-----------LMRCQYCHNRDTW-DLHDGREIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
V+++ + G +GGE +LQ +A ++TNG I
Sbjct: 53 VEEIMKEAVSYRHFMKASGGGVTASGGEAMLQPEFIRDFFRAAQAENIHTCLDTNGYIRK 112
Query: 125 PQG 127
Sbjct: 113 HTD 115
>gi|297243355|ref|ZP_06927288.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
AMD]
gi|296888602|gb|EFH27341.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
AMD]
Length = 293
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 27/190 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + G +GGE ++Q + +A + G ++T+G + +
Sbjct: 107 KKVDRYQSLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDE 166
Query: 130 WIC------VSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
I + K+G + K L + RF L P E
Sbjct: 167 MIEDIDLCLLDVKSGTEETYKKVTGGLLQPTIDFGQRLAKAGKKIWVRFVLVPG-LTDSE 225
Query: 183 ENTNLAISYC 192
EN C
Sbjct: 226 ENVEKVAEIC 235
>gi|228477166|ref|ZP_04061804.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
salivarius SK126]
gi|228251185|gb|EEK10356.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
salivarius SK126]
Length = 266
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 28/169 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC +C++C ++ K
Sbjct: 17 ESFGSVDGPGIR------FIVFMQGC-----------KMRCQYCHNPDTWAMESNKAVER 59
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V+ + D ++G ++GGE +LQ+D L K G ++T G
Sbjct: 60 TVEDVLDEALRFRHFWGEQG-GITVSGGEAMLQIDFVTALFTEAKKLGIHCTLDTCGFAY 118
Query: 124 PPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ V+ D+K ++ K V Q N + + +
Sbjct: 119 RNTPEYHEVVDKLLAVTDLVLLDIKEIDPEQHKFVTRQPNKNILEFAQY 167
>gi|153939886|ref|YP_001392565.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
str. Langeland]
gi|152935782|gb|ABS41280.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
str. Langeland]
gi|295320551|gb|ADG00929.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
str. 230613]
Length = 232
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ +G ++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKCKNQGIHTVLDTSG 104
>gi|113461290|ref|YP_719359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus
129PT]
gi|112823333|gb|ABI25422.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus somnus
129PT]
Length = 246
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLHDGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAILQAEFVRDWFKACKAEGISTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|330829141|ref|YP_004392093.1| pyruvate formate-lyase activating enzyme [Aeromonas veronii B565]
gi|328804277|gb|AEB49476.1| Pyruvate formate-lyase activating enzyme [Aeromonas veronii B565]
Length = 216
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 3/110 (2%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVP 102
+C++C G V +L I G +GGE +LQ
Sbjct: 1 MRCKYCHNRDTW-DTEGGREVTVPELMSDITSYRHFMNASGGGVTASGGEAMLQPAFITE 59
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
L A ++G ++TNG + + L IK + K +
Sbjct: 60 LFTACKEKGIHTCLDTNGFVRHLDEQVDKLLDQTDLVLLDIKQINDEKHI 109
>gi|327400235|ref|YP_004341074.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Archaeoglobus veneficus SNP6]
gi|327315743|gb|AEA46359.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Archaeoglobus veneficus SNP6]
Length = 232
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 19/102 (18%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G++ SGC +C FC G + +V L I E ++
Sbjct: 16 GKLCSVIFLSGCPF-----------RCPFC---HNHELLAGGTKTDVSGLIGKISENYLI 61
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+TGGEPL+Q L + L GF + ++TNG
Sbjct: 62 DG-----VCITGGEPLMQNIEDLCKKLKDAGFAVKIDTNGYY 98
>gi|300722527|ref|YP_003711817.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
ATCC 19061]
gi|297629034|emb|CBJ89619.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
ATCC 19061]
Length = 246
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 59/193 (30%), Gaps = 31/193 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 11 ESCGTVDGPGI---RFIVF--FQGC-----------LMRCLYCHNRDTW-DTHGGKTVTV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
++L G +GGE +LQ + +A + G ++TNG +
Sbjct: 54 EELVKEATTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHAEGINTCLDTNGFVRRY 113
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
I DL + ++L Q V N+ +F + + N
Sbjct: 114 DSIID---ELLDNTDLVMLDLKQLNDDIHQKLVGVSNHRTLEFAHY--------LAKRNQ 162
Query: 186 NLAISYCFQNPKW 198
I Y P W
Sbjct: 163 RTWIRYVVV-PDW 174
>gi|260583914|ref|ZP_05851662.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans
ATCC 700633]
gi|260158540|gb|EEW93608.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans
ATCC 700633]
Length = 253
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C FC G G +
Sbjct: 13 ESFGSVDGPGVR------FVTFMQGC-----------RMRCEFCHNPDTWNIG-GGKKIT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
+L + K+G ++GGEPLLQ + + G +++ G
Sbjct: 55 SQELLEEALRYRAFWGKKG-GVTVSGGEPLLQVDFLIDFFKRCKAMGIHTTLDSCGM 110
>gi|170717241|ref|YP_001784359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus
2336]
gi|168825370|gb|ACA30741.1| pyruvate formate-lyase activating enzyme [Haemophilus somnus 2336]
Length = 246
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F GC +C++C G +
Sbjct: 11 ESCGTVDGPGIR------FILFLQGC-----------LMRCKYCHNRDTW-DLHDGKEIS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A G ++TNG +
Sbjct: 53 VEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFKACKAEGISTCLDTNGFVRH 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|189424840|ref|YP_001952017.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Geobacter lovleyi SZ]
gi|189421099|gb|ACD95497.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Geobacter lovleyi SZ]
Length = 193
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 26/139 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G A VFC GC +C +C + G G +
Sbjct: 10 FTTIDYPGKLA--AVVFC--QGCP-----------WRCSYCHNQHLLDAGQSG-TVTWQE 53
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE----- 123
+ +E++ + V +GGEP +Q +QA+ + GF + T G
Sbjct: 54 IIRFLEQRRSLLDA----VVFSGGEPTMQPTLPEALQAIRRMGFLTGLHTGGPYPQRLAA 109
Query: 124 PPQGIDWICVSPKAGCDLK 142
+DW+ + KA L
Sbjct: 110 CLSQLDWVGMDLKAPFKLY 128
>gi|296877199|ref|ZP_06901239.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 15912]
gi|296431719|gb|EFH17526.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 15912]
Length = 258
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/182 (23%), Positives = 62/182 (34%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 8 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRMNPEPM 51
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
GT G VD++ D + + E+ G L+GGE Q + L++A
Sbjct: 52 LDAVTKAPGTTGQEKTVDEIIDEVMKDIDFYEESGGGMTLSGGEIFAQFEFAKALLKAAK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+RG A+ET +E + ID I DLK + K N I + F
Sbjct: 112 ERGLHTAIETTAFVEHEKFIDLIQYVDFIYTDLKHYNSLKHKKKVGVHNSLIIENIHYAF 171
Query: 169 ER 170
+
Sbjct: 172 KE 173
>gi|253580416|ref|ZP_04857681.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848146|gb|EES76111.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 231
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 18/107 (16%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C FC + + + Y+ ++L ++++ +
Sbjct: 20 STIF--LGGCNF-----------RCPFCQNGILVVAPGEQPDYSQEELLTFLKKRKGILD 66
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
++GGEP L + + + G+ + ++TNG+
Sbjct: 67 G----VCISGGEPTLSDGLEEFLGKIKELGYAVKLDTNGSRPKIVKH 109
>gi|301061749|ref|ZP_07202489.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[delta proteobacterium NaphS2]
gi|300444137|gb|EFK08162.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[delta proteobacterium NaphS2]
Length = 234
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQ 77
++G+++ +GCN C +C D V + G ++ ++ +E +
Sbjct: 14 YSGKISCVVFLAGCNFT-----------CPYCHNPDLVRRKPFNGSHFDEKKIYAFLESR 62
Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPP-------QGID 129
+ V++GGEP L +P + + G+ + ++TNGT ID
Sbjct: 63 KGFLDG----VVISGGEPTLNEHLPHFLERIKHLGYPVKLDTNGTRPRMVRRLIDNGLID 118
Query: 130 WICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTN 186
+I + KA L I G + + V + + + +F ++PM N
Sbjct: 119 YIAMDIKADPLAYPLYIAGSYNPQSILTSVEIIRNSELPHEFRTTCVKPMVNEQGIRNIA 178
Query: 187 LAI 189
AI
Sbjct: 179 QAI 181
>gi|239623045|ref|ZP_04666076.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridiales bacterium 1_7_47_FAA]
gi|239522412|gb|EEQ62278.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridiales bacterium 1_7_47FAA]
Length = 232
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F GCN +C FC + + G Y +++ D + ++ E
Sbjct: 21 TIF--TGGCNF-----------RCPFCHNSEL-LDSGAGEDYTEEEIFDFLHKRRGILEG 66
Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+TGGEP LQ D+ I+ + G + ++TNG
Sbjct: 67 ----VCITGGEPTLQPDLEDFIRRIRSMGLAVKLDTNGYRP 103
>gi|21227468|ref|NP_633390.1| ribonucleoside-triphosphate reductase activating enzyme
[Methanosarcina mazei Go1]
gi|20905840|gb|AAM31062.1| Ribonucleoside-triphosphate reductase activating enzyme
[Methanosarcina mazei Go1]
Length = 263
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
G+ A F GC L +C +C + ++GT + +EE+
Sbjct: 20 WTGKSAFTIFFRGCPL-----------RCPYC-QNHPYLEGTGLVE------LEFVEEKI 61
Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+ + V +GGEPL+Q V L + G + + TNG
Sbjct: 62 KSSKPFVSAVVFSGGEPLMQAGIVDLAEFAKNLGLSVGIHTNGCYP 107
>gi|237715802|ref|ZP_04546283.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
gi|260171163|ref|ZP_05757575.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
gi|293369650|ref|ZP_06616228.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
CMC 3f]
gi|294647497|ref|ZP_06725078.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
CC 2a]
gi|294807462|ref|ZP_06766265.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides
xylanisolvens SD CC 1b]
gi|299146489|ref|ZP_07039557.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_23]
gi|229443449|gb|EEO49240.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
gi|292635354|gb|EFF53868.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
CMC 3f]
gi|292637157|gb|EFF55594.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides ovatus SD
CC 2a]
gi|294445357|gb|EFG14021.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides
xylanisolvens SD CC 1b]
gi|298516980|gb|EFI40861.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_23]
Length = 242
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 33/192 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GCN +C +C DT I G G
Sbjct: 9 ESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTP 48
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
+++ + Q K G +GGEP Q VPL++ L ++G + +++NG I
Sbjct: 49 TPPEEIVRMAMSQRPFFGKRG-GVTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGI 107
Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFS----LQP 175
+ + ++ D+K Q L + + ++ + + F L P
Sbjct: 108 WNEEVEELFKLTDLVLLDIKEFNPARHQALTGRSNEQTIRTAAWLEENEKPFWLRYVLVP 167
Query: 176 MDGPFLEENTNL 187
F E+ L
Sbjct: 168 GYSDFEEDIRRL 179
>gi|317476758|ref|ZP_07936001.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides eggerthii
1_2_48FAA]
gi|316906933|gb|EFV28644.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides eggerthii
1_2_48FAA]
Length = 246
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 26/122 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GC +C +C DT I G
Sbjct: 13 ESMGTFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDSKGGIP 52
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
D++ + Q K+G +GGEP LQ +PL + L G ++TNG I
Sbjct: 53 TPADEILQMAVSQKAFFGKKG-GITFSGGEPTLQAETLIPLFKELKANGIHTCLDTNGGI 111
Query: 123 EP 124
Sbjct: 112 WN 113
>gi|298252712|ref|ZP_06976506.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
5-1]
gi|297533076|gb|EFH71960.1| pyruvate formate-lyase 1 activating enzyme [Gardnerella vaginalis
5-1]
Length = 293
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 27/190 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + G +GGE ++Q + +A + G ++T+G + +
Sbjct: 107 KKVDRYQSLFKATGGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGFLNRNYTDE 166
Query: 130 WIC------VSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
I + K+G + K L + RF L P E
Sbjct: 167 MIDDIDLCLLDVKSGTEETYKKVTGGLLQPTIDFGQRLAKAGKKIWVRFVLVPGLTS-SE 225
Query: 183 ENTNLAISYC 192
EN C
Sbjct: 226 ENVEKVAEIC 235
>gi|84490213|ref|YP_448445.1| hypothetical protein Msp_1431 [Methanosphaera stadtmanae DSM 3091]
gi|84373532|gb|ABC57802.1| partially conserved hypothetical protein [Methanosphaera stadtmanae
DSM 3091]
Length = 183
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 40/185 (21%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
G Y+ DQL + I++ +TGGEPLL D + L K ++ +ETN T
Sbjct: 2 GKEYSYDQLNEEIQKLMTPDFDS---LEITGGEPLLHSDY-IHDFLKKYPYKAMLETNAT 57
Query: 122 IEPPQGI---DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS------ 172
VS E V+ S E + + +
Sbjct: 58 KPIELDNLNDVIDIVSMDIKLPEHFNSKDEWIEVYENELKSIEVMQLNNQKYYIKIVVSP 117
Query: 173 ---------------------------LQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
+ PM+ ++N +N + Q H
Sbjct: 118 TTPINVINKIMKDINDISKEVEIIIQPVSPMELWDKKDNLFKISEIIGKNHSVSIIPQIH 177
Query: 206 KFIGI 210
K++ +
Sbjct: 178 KYLNV 182
>gi|168181046|ref|ZP_02615710.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
gi|182668158|gb|EDT80137.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
Length = 279
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 42/192 (21%)
Query: 2 KLYS--IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-QCRFCDT---- 52
+ + +I F ++ G G A+F F GCN + + C+ C T
Sbjct: 1 MMLRGLVNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFV 55
Query: 53 ----------DFVGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRY 87
D+V K G R + ++I++ T
Sbjct: 56 CPYGAVEFLGDYVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPF-ISG 114
Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
++GGE LQ D + L + + G I V+TNG+++ + + A D+K
Sbjct: 115 ITVSGGECTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFD 174
Query: 146 GQELKLVFPQVN 157
+E K++ + N
Sbjct: 175 NEEHKMLTKRNN 186
>gi|307691541|ref|ZP_07633778.1| pyruvate formate-lyase activating enzyme [Ruminococcaceae bacterium
D16]
Length = 242
Score = 53.4 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R VF GC L +C +C G + L
Sbjct: 14 VDGPGV---RAVVF--LQGCPL-----------RCLYCHNPDTQTFS-GGQETTPEALVK 56
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+ E G +GGEPL Q D + ++ L G ++T+G +
Sbjct: 57 RLLRFRPYFESSGGGVTFSGGEPLGQPDFLLACLKLLKAEGVHTCIDTSGVGQ 109
>gi|261253301|ref|ZP_05945874.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
102891]
gi|260936692|gb|EEX92681.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
102891]
Length = 215
Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C++C G V+++ + G +GGE +LQ +
Sbjct: 1 MRCKYCHNRDTW-DTHDGKEVTVEEIISEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEPPQG 127
+A + G ++TNG I
Sbjct: 60 FFRAAHNEGIHTCLDTNGYIRKHTE 84
>gi|297162459|gb|ADI12171.1| radical SAM domain-containing protein [Streptomyces bingchenggensis
BCW-1]
Length = 472
Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C +C + + G + ++ DL+++ + + R +
Sbjct: 104 GCNL-----------RCPYC---YASSEKCLPGELSTEESLDLVDQ---AADMDVRQMIF 146
Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTI--------EPPQGIDWICVSPKAGCDL 141
TGGEP+L+ D+ + RG + + TNGT+ + + + VS G
Sbjct: 147 TGGEPMLRKDLFLVASHARDRGLTVNMITNGTMIRTAEIARQISEIFGTVTVSVDGGTAE 206
Query: 142 KIKGGQ 147
+ +
Sbjct: 207 IHERTR 212
>gi|298482014|ref|ZP_07000203.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D22]
gi|298271878|gb|EFI13450.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. D22]
Length = 242
Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 29/174 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GCN +C +C DT I G G
Sbjct: 9 ESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTP 48
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
+++ + Q K G +GGEP Q VPL++ L ++G + +++NG I
Sbjct: 49 TPPEEIVRMAMSQRPFFGKRG-GVTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGI 107
Query: 123 EPPQGIDWICVSPKAGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ + ++ D+K Q L + + ++ + + F L
Sbjct: 108 WNEEVEELFKLTDLVLLDIKEFNPARHQALTGRSNEQTIRTAAWLEENEKPFWL 161
>gi|300857666|ref|YP_003782649.1| pyruvate formate-lyase activating enzyme [Corynebacterium
pseudotuberculosis FRC41]
gi|300685120|gb|ADK28042.1| pyruvate formate-lyase activating enzyme [Corynebacterium
pseudotuberculosis FRC41]
gi|302205405|gb|ADL09747.1| formate-C-acetyltransferase-activating enzyme [Corynebacterium
pseudotuberculosis C231]
gi|302329959|gb|ADL20153.1| Putative oxidoreductase [Corynebacterium pseudotuberculosis 1002]
gi|308275643|gb|ADO25542.1| pyruvate formate-lyase activating enzyme [Corynebacterium
pseudotuberculosis I19]
Length = 289
Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 32/197 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F +GC L +C +C +Q KG V+ +
Sbjct: 61 VDGPGTRM---TMFM--AGCPL-----------RCLYCHNPDT-MQMKKGTLERVEDIIK 103
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT------IEP 124
I+ + G ++GGEPL + +++ ++ G ++T+G E
Sbjct: 104 KIKRYRRVFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGYLGARLSDED 163
Query: 125 PQGIDWICVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
+ ID + + KAG + + +EL+ N + RF L P
Sbjct: 164 LENIDLVLLDVKAGDEETYRRVTGRELQPTIDFGN-RLHAVGKPVWIRFVLVPG-LTDSP 221
Query: 183 ENTNLAISYCFQNPKWR 199
EN N +W+
Sbjct: 222 ENINKVADIVE---QWK 235
>gi|300728461|ref|ZP_07061821.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii
B14]
gi|299774262|gb|EFI70894.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii
B14]
Length = 248
Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 40/212 (18%)
Query: 1 MKLYSIK--EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M L + E F ++ G G F GC +C+FC
Sbjct: 1 MNLGYVHSIESFGSVDGPGIR------FIAFLKGCP-----------MRCQFCHNPDTW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
+ K D L D E E ++GGE L+Q+D + L + ++RG
Sbjct: 43 KLDKTNETTADDLLDKAERYRTY-WGEKGGITVSGGEALMQIDFLLELFEKAHQRGINTC 101
Query: 116 VETNGTIEPPQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++T+ + W + V+ D+K +E K + N + + +
Sbjct: 102 LDTS-AQPFTRHGAWFEKFEKLMAVTDTILLDIKHINSEEHKKLTRWGNENILDCARYLS 160
Query: 169 E-------RFSLQPMDGPFLEENTNLAISYCF 193
+ R L P + +
Sbjct: 161 DINKPVWIRHVLIP-SITDNDRYLQELAEFLK 191
>gi|197284599|ref|YP_002150471.1| pyruvate formate lyase-activating enzyme 1 [Proteus mirabilis
HI4320]
gi|227356781|ref|ZP_03841166.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC
29906]
gi|194682086|emb|CAR41647.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis HI4320]
gi|227163071|gb|EEI48006.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC
29906]
Length = 246
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 21/167 (12%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 11 ESCGTVDGPGI---RFIVF--FQGC-----------LMRCLYCHNRDTW-DTHGGQIVTV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP- 124
D+L G +GGE +LQ + +A K ++TNG +
Sbjct: 54 DELMKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKENIHTCLDTNGFVRRY 113
Query: 125 -PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + N + + +R
Sbjct: 114 DPVIDELMDVTDLVMLDLKQVNDDIHQKLVGVSNQRTLEFARYLAKR 160
>gi|320102928|ref|YP_004178519.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC
43644]
gi|319750210|gb|ADV61970.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC
43644]
Length = 273
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G A+F SGC +C++C G V+++ D
Sbjct: 46 VDGPGLRC---AIF--LSGC-----------LLRCQYCHNPDTW-APRNGRLVEVEEVID 88
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ L+GGEPL Q + +A G A++T+G
Sbjct: 89 RLRPYLRMMSLGHGGVTLSGGEPLYQDRFAFEIFKACRGLGLHTALDTSGY 139
>gi|313145793|ref|ZP_07807986.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
3_1_12]
gi|313134560|gb|EFR51920.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
3_1_12]
Length = 241
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 23/171 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T G G R+ VF GCN +C +C +
Sbjct: 8 ESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIEAKGGTPTHPD 51
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPP 125
+ + + ++ G+K +GGEP Q +PL + L + G I ++TNG +
Sbjct: 52 EIVRMAVSQKAFFGKKG--GITFSGGEPTFQAKALIPLFKRLKEAGIHICLDTNGGLWNN 109
Query: 126 QGIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ + ++ D+K K Q L + + ++ + + F L
Sbjct: 110 DVEELLGLTDLVLLDIKEFNPKHHQSLTGRSNEQTLKTAAWLEANQKPFWL 160
>gi|322807903|emb|CBZ05478.1| radical activating enzyme [Clostridium botulinum H04402 065]
Length = 278
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 40/186 (21%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFCDT 52
+ +I F ++ G G A+F F GCN + + C +
Sbjct: 6 VNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV 60
Query: 53 DFVG----IQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+F+G K G R + ++I+E T ++GG
Sbjct: 61 EFLGDSVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPF-ISGITVSGG 119
Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
E LQ D + L + + G I V+TNG+++ + I + A D+K E K+
Sbjct: 120 ECTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLIELMDMAMLDVKSFDSDEHKM 179
Query: 152 VFPQVN 157
+ + N
Sbjct: 180 LTKRNN 185
>gi|332107698|gb|EGJ08922.1| radical SAM family protein [Rubrivivax benzoatilyticus JA2]
Length = 203
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 24/118 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G SGC L +C +C + +
Sbjct: 41 ETCGTVDGPGIR-----YVLFLSGCPL-----------RCAYCHNPDTWHRHDG----TL 80
Query: 68 DQLADLIEEQWITGEKEGRY--CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+A+++ + + L+GGEPL Q L++ G A++T+G
Sbjct: 81 TSVAEILTDIGRYRGFIQAHGGVTLSGGEPLTQPRFVKALLRGCKAMGLHTALDTSGY 138
>gi|288819035|ref|YP_003433383.1| pyruvate formate-lyase activating enzyme [Hydrogenobacter
thermophilus TK-6]
gi|288788435|dbj|BAI70182.1| pyruvate formate-lyase activating enzyme [Hydrogenobacter
thermophilus TK-6]
gi|308752618|gb|ADO46101.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Hydrogenobacter thermophilus TK-6]
Length = 247
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 35/195 (17%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCN +C +C + + G +++ +E+ +
Sbjct: 40 VF--TQGCNF-----------RCPYCYNVELVLPEYFGKTIPQEEILSFLEQ----RVGK 82
Query: 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVSPK 136
V+TGGEP + I+ + K F + ++TNG++ D+I + K
Sbjct: 83 LEGVVITGGEPTIHAGLKDFIEKVKKPSFSVKLDTNGSMPEVIEELIKDKLVDYIAMDIK 142
Query: 137 AGCD---LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
A D ++ ++K + +N+ + + ++F + +++ +
Sbjct: 143 APPDKYEEVVRAKVDIKAINRSINLIMNSGVDYEFRTTV---VKNQLSKDDILKIAEWIK 199
Query: 194 QNPKWRLSVQTHKFI 208
+ ++ L KF+
Sbjct: 200 EAKRYYLQ----KFL 210
>gi|187777435|ref|ZP_02993908.1| hypothetical protein CLOSPO_01002 [Clostridium sporogenes ATCC
15579]
gi|187774363|gb|EDU38165.1| hypothetical protein CLOSPO_01002 [Clostridium sporogenes ATCC
15579]
Length = 279
Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 42/192 (21%)
Query: 2 KLYS--IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQ 46
+ + +I F ++ G G A+F F GCN + +
Sbjct: 1 MMLRGLVNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFV 55
Query: 47 CRFCDTDFVG----IQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRY 87
C + +F+G K G R + ++I+E T
Sbjct: 56 CPYGAVEFLGDSVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILRTKPF-ISG 114
Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
++GGE LQ D + L + + G I V+TNG+++ + + A D+K
Sbjct: 115 ITVSGGECTLQKDFLIDLFEKVKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFD 174
Query: 146 GQELKLVFPQVN 157
QE K++ + N
Sbjct: 175 NQEHKMLTKRDN 186
>gi|224012631|ref|XP_002294968.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|224013938|ref|XP_002296633.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
gi|220968985|gb|EED87329.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
gi|220969407|gb|EED87748.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 231
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 29/190 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----IQGTKGG 63
E F + G G VF GC S +C +C
Sbjct: 9 ETFTSNDGPGIRT---LVF--LQGC-----------SKRCMYCSNPETQCIVDPFSCPEV 52
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ +++A++++ +GGEPLLQ + + + G V+T+G
Sbjct: 53 AVSDEEVANVLKRYEHFLRPNNGGITFSGGEPLLQPNFVGSVFKKAKSIGLTTCVDTSGH 112
Query: 122 ------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
+ D++ + K + Q Y+ +++ L
Sbjct: 113 GNPAIWNKCLPHTDYVMLCLKGMDMKLASFISGVSESNNQRAREFAKYVRDNYKNIKLS- 171
Query: 176 MDGPFLEENT 185
+ L++ T
Sbjct: 172 IRWVLLKDMT 181
>gi|197304077|ref|ZP_03169102.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC
29176]
gi|197296849|gb|EDY31424.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC
29176]
Length = 249
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F +GC +C+FC + G
Sbjct: 12 ESFGSVDGPGV---RFIIFV--NGCP-----------MRCQFCHNPDTW-KMQDGEERTT 54
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D+L +KEG ++GGEPL+Q+D + L + G ++T G +
Sbjct: 55 DELLKTALRYRSYWKKEG-GITVSGGEPLMQMDFMIDLFKKAKAEGVHTNIDTCGAVFTR 113
Query: 126 QGIDW 130
+ +
Sbjct: 114 EEPFF 118
>gi|28379672|ref|NP_786564.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum WCFS1]
gi|254557826|ref|YP_003064243.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum JDM1]
gi|300766730|ref|ZP_07076646.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|28272512|emb|CAD65436.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum WCFS1]
gi|254046753|gb|ACT63546.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum JDM1]
gi|300495681|gb|EFK30833.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 273
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 42/209 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
E F ++ G G R GC+ +C++C + G
Sbjct: 25 ETFGSVDGPG---------IRYVAFLQGCH-----------MRCQYCHNPDTW-KLNVGD 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ D++ + + + ++GGE L+Q+D + L + ++T+G
Sbjct: 64 QMTADEILEDAAKYR-AFWGKTGGITVSGGESLVQIDFILDLFEKAKAMNISTCLDTSGQ 122
Query: 122 IEPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER----- 170
+ + + V+ + D+K + K + N + + I + +
Sbjct: 123 PFTREQPFFDKFERLMKVTDISLVDIKHIDSAKHKQLTQYGNENILDMIQYMAQHHDDMW 182
Query: 171 --FSLQPMDGPFLEENTNLAISYCFQNPK 197
L P +E+ Y + P
Sbjct: 183 IRHVLVPQ-RTDYDEDLKKLGDYIAKIPN 210
>gi|210615494|ref|ZP_03290621.1| hypothetical protein CLONEX_02837 [Clostridium nexile DSM 1787]
gi|210150343|gb|EEA81352.1| hypothetical protein CLONEX_02837 [Clostridium nexile DSM 1787]
Length = 232
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F SGCN +C FC + + + +Y +++ ++++ +
Sbjct: 21 TIF--TSGCNF-----------RCPFCHNAPLVLGTGQTEKYPEEEIFTFLKKRQGILDG 67
Query: 84 EGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
++GGEPLLQ D+ ++ + + GF + ++TNG+
Sbjct: 68 ----VCVSGGEPLLQNDIERFLEQVKELGFLVKLDTNGSFP 104
>gi|81428584|ref|YP_395584.1| formate C-acetyltransferase activating enzyme (pyruvate
formate-lyase activating enzyme) [Lactobacillus sakei
subsp. sakei 23K]
gi|78610226|emb|CAI55275.1| Formate C-acetyltransferase activating enzyme (Pyruvate
formate-lyase activating enzyme) [Lactobacillus sakei
subsp. sakei 23K]
Length = 269
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 47/194 (24%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C FC G+ G Y
Sbjct: 33 ESFGSVDGPGIR------FVAFLQGC-----------RMRCEFCHNPDTWNIGS-GEPYT 74
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
D+L I + G+ +GGE L+Q+D + L + +G ++T G
Sbjct: 75 ADEL---IAKALPYKAFWGKEGGITCSGGESLIQIDFLIDLFKKCKAQGINTCLDTCGQ- 130
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFL 181
K + K + ++S + D E L F
Sbjct: 131 ---------------PFTYKEPFFSKFKELMKYTDLSMVDIKHIDPEGHKKL----TGFS 171
Query: 182 EENTNLAISYCFQN 195
E+ I Y +
Sbjct: 172 NEHILEMIEYMSNH 185
>gi|298384455|ref|ZP_06994015.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 1_1_14]
gi|298262734|gb|EFI05598.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 1_1_14]
Length = 232
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 33/188 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GCN +C +C DT I G G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPE 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K G +GGEP Q VPL++ L ++G + +++NG +
Sbjct: 43 EIVRMAMSQRPFFGKRG-GITFSGGEPTFQAKALVPLVRELKEKGIHVCLDSNGGLWNED 101
Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVN-------VSPENYIGFDFERFSLQPMDGP 179
+ ++ D+K + + + N E + R+ L P
Sbjct: 102 VEELFRLTDLVLLDIKEFNPNRHQTLTGRSNEQTIRTAAWLEEQEKPFWLRYVLVPGYSD 161
Query: 180 FLEENTNL 187
F E+ L
Sbjct: 162 FEEDIRAL 169
>gi|227833911|ref|YP_002835618.1| pyruvate formate lyase activating enzyme [Corynebacterium
aurimucosum ATCC 700975]
gi|262184914|ref|ZP_06044335.1| pyruvate formate lyase activating enzyme [Corynebacterium
aurimucosum ATCC 700975]
gi|227454927|gb|ACP33680.1| pyruvate formate lyase activating enzyme [Corynebacterium
aurimucosum ATCC 700975]
Length = 289
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 35/165 (21%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F SGC L +C++C ++ G ++ +
Sbjct: 61 VDGPGTRM---TMFM--SGCPL-----------RCQYCHNPDT-MEMKVGTLERIEDVVK 103
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDW 130
I+ + G ++GGEPL Q+ L++ ++ G ++T+G +
Sbjct: 104 RIKRYKPVFKASGGGLTISGGEPLFQIAFARRLLKEVHDAGIHTTIDTSGYL-------- 155
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
G L+ + + LV V E R LQP
Sbjct: 156 -------GARLRDEDLDNIDLVLLDVKSGDEETYK-KVTRRELQP 192
>gi|225871127|ref|YP_002747074.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
equi 4047]
gi|225700531|emb|CAW95000.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
equi 4047]
Length = 263
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 30/174 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFLQGC-----------KMRCQYCHNPDTWAMETNQSQR- 58
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 59 -RTVNDVLKEALQYRHFWGKKGGITVSGGEAMLQMDFITALFTEAKKLGIHTTLDTCGFA 117
Query: 123 EPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + V+ DLK ++ KLV Q N + + + +R
Sbjct: 118 YRPTPEYHELLETLLAVTDLILLDLKEIDEEQHKLVTRQPNKNILQFARYLSDR 171
>gi|195978725|ref|YP_002123969.1| pyruvate formate-lyase-activating enzyme [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225867958|ref|YP_002743906.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus]
gi|195975430|gb|ACG62956.1| pyruvate formate-lyase-activating enzyme [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225701234|emb|CAW98186.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus]
Length = 263
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 30/174 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFLQGC-----------KMRCQYCHNPDTWAMETNQSQR- 58
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 59 -RTVNDVLKEALQYRHFWGKKGGITVSGGEAMLQMDFITALFTEAKKLGIHTTLDTCGFA 117
Query: 123 EPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + V+ DLK ++ KLV Q N + + + +R
Sbjct: 118 YRPTPEYHELLETLLAVTDLILLDLKEIDEEQHKLVTRQPNKNILQFARYLSDR 171
>gi|238922883|ref|YP_002936396.1| pyruvate formate-lyase activating enzyme [Eubacterium rectale ATCC
33656]
gi|238874555|gb|ACR74262.1| pyruvate formate-lyase activating enzyme [Eubacterium rectale ATCC
33656]
Length = 249
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 22/120 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---QGTKGG 63
E F + G G R VF GCN +C++C +
Sbjct: 11 VESFGSADGPGV---RYIVF--LKGCN-----------MRCKYCHNPDTWAKCGENDGAK 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
++ K+ ++GGE LLQ+D L + ++G ++T+G
Sbjct: 55 LMTPQEVLKTAMRYK-AYWKQTGGITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGN 113
>gi|293401093|ref|ZP_06645237.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305219|gb|EFE46464.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 256
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 21/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G GC +C+FC
Sbjct: 17 ETFGSVDGPGVR-----YVIFLQGC-----------RMRCQFCHNADTWKIMEGSE--TA 58
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ + K ++GGEPLLQ+D + L + ++G ++T G
Sbjct: 59 EDVLRKALRYKPY-WKHSGGITVSGGEPLLQIDFLLELFKLAKQKGVHTVIDTCGN 113
>gi|254459192|ref|ZP_05072614.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacterales bacterium GD 1]
gi|207084085|gb|EDZ61375.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacterales bacterium GD 1]
Length = 234
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
FSGCN +C +C + + G Y +D++ + + + E
Sbjct: 37 FSGCN-----------MRCDYCYNKAIVF--SNSGSYTIDEVLEFLHSRVNLLEA----V 79
Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
VL+GGE V +A+ K GF+I ++TNGT
Sbjct: 80 VLSGGEASSHDLVEFCKAVKKLGFKIKLDTNGTY 113
>gi|160887576|ref|ZP_02068579.1| hypothetical protein BACOVA_05596 [Bacteroides ovatus ATCC 8483]
gi|237722436|ref|ZP_04552917.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
gi|262407418|ref|ZP_06083966.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_22]
gi|315919480|ref|ZP_07915720.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
gi|156107987|gb|EDO09732.1| hypothetical protein BACOVA_05596 [Bacteroides ovatus ATCC 8483]
gi|229448246|gb|EEO54037.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
gi|262354226|gb|EEZ03318.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_22]
gi|295087461|emb|CBK68984.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides
xylanisolvens XB1A]
gi|313693355|gb|EFS30190.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
Length = 232
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 33/188 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GCN +C +C DT I G G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPE 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K G +GGEP Q VPL++ L ++G + +++NG I +
Sbjct: 43 EIVRMAMSQRPFFGKRG-GVTFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGIWNEE 101
Query: 127 GIDWICVSPKAGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFS----LQPMDGP 179
+ ++ D+K Q L + + ++ + + F L P
Sbjct: 102 VEELFKLTDLVLLDIKEFNPARHQALTGRSNEQTIRTAAWLEENEKPFWLRYVLVPGYSD 161
Query: 180 FLEENTNL 187
F E+ L
Sbjct: 162 FEEDIRRL 169
>gi|308181906|ref|YP_003926034.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|308047397|gb|ADN99940.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 273
Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 42/209 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
E F ++ G G R GC+ +C++C + G
Sbjct: 25 ETFGSVDGPG---------IRYVAFLQGCH-----------MRCQYCHNPDTW-KLNVGD 63
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ D++ + + + ++GGE L+Q+D + L + ++T+G
Sbjct: 64 QMTADEILEDAAKYR-AFWGKTGGITVSGGESLVQIDFILDLFEKAKAMNISTCLDTSGQ 122
Query: 122 IEPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER----- 170
+ + + V+ + D+K + K + N + + I + +
Sbjct: 123 PFTREQPFFDKFERLMKVTDISLVDIKHIDSAKHKQLTQYGNENILDMIQYMAQHHDDMW 182
Query: 171 --FSLQPMDGPFLEENTNLAISYCFQNPK 197
L P +E+ Y + P
Sbjct: 183 IRHVLVPQ-RTDYDEDLKKLGDYIAKIPN 210
>gi|291528757|emb|CBK94343.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale
M104/1]
Length = 249
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 22/120 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---QGTKGG 63
E F + G G R VF GCN +C++C +
Sbjct: 11 VESFGSADGPGV---RYIVF--LKGCN-----------MRCKYCHNPDTWAKCGENDGAK 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
++ K+ ++GGE LLQ+D L + ++G ++T+G
Sbjct: 55 LMTPQEVLKTAMRYK-AYWKQTGGITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGN 113
>gi|148381163|ref|YP_001255704.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
str. ATCC 3502]
gi|153930820|ref|YP_001385538.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
str. ATCC 19397]
gi|153935264|ref|YP_001388944.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
str. Hall]
gi|148290647|emb|CAL84776.1| formate-lyase activating enzyme [Clostridium botulinum A str. ATCC
3502]
gi|152926864|gb|ABS32364.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
str. ATCC 19397]
gi|152931178|gb|ABS36677.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
str. Hall]
Length = 232
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ + A++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKCKNQSIHTALDTSG 104
>gi|52548364|gb|AAU82213.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon
GZfos11H11]
Length = 230
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCN +C +C + ++ + I T +
Sbjct: 22 VF--TQGCNF-----------RCPYCHNP----ELVDPKLFSHPIAEEDILAFLQTRRGK 64
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L + + + F + ++TNG+
Sbjct: 65 LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104
>gi|15601942|ref|NP_245014.1| pyruvate formate lyase-activating enzyme 1 [Pasteurella multocida
subsp. multocida str. Pm70]
gi|12720286|gb|AAK02161.1| Act [Pasteurella multocida subsp. multocida str. Pm70]
Length = 246
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCQYCHNRDTW-DLHAGKEIT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L + G +GGE +LQ + A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNASGGGVTASGGEAVLQAEFVRDWFSACKKEGIHTCLDTNGFVRN 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|170756235|ref|YP_001783216.1| radical SAM domain-containing protein [Clostridium botulinum B1
str. Okra]
gi|169121447|gb|ACA45283.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
Length = 278
Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 40/181 (22%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-QCRFCDT---------- 52
+ +I F ++ G G A+F F GCN + + C+ C T
Sbjct: 6 VNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV 60
Query: 53 ----DFVGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
D+V K G R + ++I+E T ++GG
Sbjct: 61 EFLGDYVKWDENKCKNCGLCLKKCKNNCGPRNKYMSVGEIIKEILKTKPF-ISGITVSGG 119
Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
E LQ D + L + + G I V+TNG+++ + + D+K E K+
Sbjct: 120 ECTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMVMLDVKSFDSDEHKM 179
Query: 152 V 152
+
Sbjct: 180 L 180
>gi|294673943|ref|YP_003574559.1| pyruvate formate-lyase activating enzyme [Prevotella ruminicola 23]
gi|294473065|gb|ADE82454.1| pyruvate formate-lyase activating enzyme [Prevotella ruminicola 23]
Length = 245
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 29/119 (24%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-- 61
E F ++ G G RF GC +CR+C G+
Sbjct: 11 ESFGSVDGPG---------IRFLIFMQGC-----------RMRCRYCHNPDTWKLGSDAC 50
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD+L + E ++GGE LLQ+D + L + ++RG ++T
Sbjct: 51 GTTATVDELLNKAERYRSY-WGPDGGITVSGGEALLQIDFLIELFEEAHRRGINTCLDT 108
>gi|253571676|ref|ZP_04849082.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
gi|251838884|gb|EES66969.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
Length = 232
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 33/188 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GCN +C +C DT I G G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPE 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K G +GGEP Q VPL++ L ++G + +++NG +
Sbjct: 43 EIVRMAMSQRPFFGKRG-GITFSGGEPTFQAKALVPLVRELKEKGIHVCLDSNGGLWNED 101
Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGP 179
+ ++ D+K + + + N + E R+ L P
Sbjct: 102 VEELFKLTDLVLLDIKEFNPNRHQTLTGRSNEQTIRTAAWLEEQGKPFWLRYVLVPGYSD 161
Query: 180 FLEENTNL 187
F E+ L
Sbjct: 162 FEEDIRAL 169
>gi|156973834|ref|YP_001444741.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi ATCC
BAA-1116]
gi|156525428|gb|ABU70514.1| hypothetical protein VIBHAR_01544 [Vibrio harveyi ATCC BAA-1116]
Length = 215
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 6/130 (4%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C++C G V+++ + G +GGE +LQ +
Sbjct: 1 MRCKYCHNRDTW-DTHDGKEVTVEEIIAEAKTYRHFMNASGGGITCSGGEAMLQPEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
+A G ++TNG I + + DL + + +K Q + N
Sbjct: 60 FFRAAQAEGIHTCLDTNGYIRKHTDVIDEVLDA---TDLVMLDLKHMKDEIHQEFIGVSN 116
Query: 163 YIGFDFERFS 172
DF R+
Sbjct: 117 RRVLDFARYL 126
>gi|322373572|ref|ZP_08048108.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C150]
gi|321278614|gb|EFX55683.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C150]
Length = 266
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 28/169 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC +C++C ++ K
Sbjct: 17 ESFGSVDGPGIR------FIVFMQGC-----------KMRCQYCHNPDTWAMESNKAVER 59
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V+ + + ++G ++GGE +LQ++ L K G ++T G
Sbjct: 60 TVEDVLEEALRFRHFWGEQG-GITVSGGEAMLQIEFVTALFTEAKKLGIHCTLDTCGFAY 118
Query: 124 PPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ V+ D+K ++ K V Q N + + +
Sbjct: 119 RNTPEYHEVVDKLLAVTDLVLLDIKEIDPKQHKFVTRQPNTNILAFAKY 167
>gi|317504869|ref|ZP_07962825.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
15606]
gi|315664053|gb|EFV03764.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
15606]
Length = 286
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 28/168 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC +C FC Q
Sbjct: 52 ETFGSVDGPGI---RYIIF--LQGCP-----------MRCLFCHNPDTWKQNKVKP-MTA 94
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D+L D E E ++GGE LLQ+D + L++ + R ++T+
Sbjct: 95 DELLDQAERYRTY-WGEKGGITISGGEALLQIDFLIELLEKAHARQINTCLDTS-AQPFT 152
Query: 126 QGIDWIC-------VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ W V+ D+K +E + + N + + +
Sbjct: 153 RNGLWFTKFERLMKVTDTVLLDIKHIRDEEHRKLTKFTNHNILDCARY 200
>gi|260753867|ref|YP_003226760.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258553230|gb|ACV76176.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 270
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 24/172 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
EI + G G F +GC L +C++C G
Sbjct: 38 EIGGAVDGPGVR------FVLFLAGCAL-----------RCQYCHNPDSWF-LKNGRAVT 79
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+ ++ + + ++ G ++GGEPL+Q + L++A G A++T G +
Sbjct: 80 LAEMMEEVASYADFLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGA 139
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173
+ + D+K + K V Q ++ ++ + L
Sbjct: 140 QADDALLSNTDLVLLDIKAFNDKRYKALTGVELQPTLAFAKWLAALKKPVWL 191
>gi|253575835|ref|ZP_04853170.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844878|gb|EES72891.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 249
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 22/120 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC QC++C T+G
Sbjct: 13 ETFGTVDGPGIR------FVLFMQGC-----------LLQCQYCHNPDTWS-LTEGKEMT 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKR-GFEIAVETNGTIE 123
V+++ IE G ++GGE L L + + KR ++TNG E
Sbjct: 55 VEEVLAEIEPYLNYYRTSGGGLTVSGGEATLQAPFVTELFREVKKRWNLHTTLDTNGYNE 114
>gi|253563344|ref|ZP_04840801.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 3_2_5]
gi|251947120|gb|EES87402.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 3_2_5]
Length = 241
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GCN +C +C DT I+ G
Sbjct: 8 ESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTA 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + Q K+G +GGEP Q +PL + L + G I ++TNG +
Sbjct: 48 TDPEEIVRMAVSQKAFFGKKG-GITFSGGEPTFQAKSLIPLFKRLKEAGIHICLDTNGGL 106
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSL 173
+ + ++ D+K + + + + + ++ + + F L
Sbjct: 107 WNNDVEELLELTDLVLLDIKEFNPEHHQSLTGRSNEQTLKTAAWLETNHKPFWL 160
>gi|94991832|ref|YP_599931.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS2096]
gi|94545340|gb|ABF35387.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS2096]
Length = 287
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC L +C++C ++
Sbjct: 41 ESFGSVDGPGIR------FIIFLQGCKL-----------RCQYCHNPDTW--EMANQQFK 81
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ + D+++E G+ ++GGE +LQ+D L K G ++T G
Sbjct: 82 IRTVNDVLKEALQYKHFWGKKGGITVSGGEAMLQIDFITALFIEAKKLGIHTTLDTCGFT 141
Query: 123 EPPQGIDW 130
P
Sbjct: 142 YRPTPEYH 149
>gi|255008076|ref|ZP_05280202.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
fragilis 3_1_12]
Length = 232
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 29/170 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GCN +C +C DT I+ G + D
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTPTHPD 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K+G +GGEP Q +PL + L + G I ++TNG +
Sbjct: 43 EIVRMAVSQKAFFGKKG-GITFSGGEPTFQAKALIPLFKRLKEAGIHICLDTNGGLWNND 101
Query: 127 GIDWICVSPKAGCDLK---IKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ + ++ D+K K Q L + + ++ + + F L
Sbjct: 102 VEELLGLTDLVLLDIKEFNPKHHQSLTGRSNEQTLKTAAWLEANQKPFWL 151
>gi|60680840|ref|YP_210984.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
fragilis NCTC 9343]
gi|60492274|emb|CAH07039.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
fragilis NCTC 9343]
Length = 241
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 29/174 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GCN +C +C DT I+ G
Sbjct: 8 ESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTA 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + Q K+G +GGEP Q +PL + L ++G I ++TNG +
Sbjct: 48 TDPEEIVRMAVSQKAFFGKKG-GITFSGGEPTFQAKSLIPLFKRLKEKGIHICLDTNGGL 106
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSL 173
+ + ++ D+K + + + + + ++ + + F L
Sbjct: 107 WNNDVEELLELTDLVLLDIKEFNPEHHQSLTGRSNEQTLKTAAWLETNHKPFWL 160
>gi|302384615|ref|YP_003820437.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium saccharolyticum WM1]
gi|302195243|gb|ADL02814.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium saccharolyticum WM1]
Length = 231
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GCN +C FC + I Y+ ++L + + + E
Sbjct: 20 ATVF--LGGCNF-----------RCPFCHNSGL-IGSEAKSEYSKEELLNFLSRRKGILE 65
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+TGGEP L D+ I+ + + G+ I ++TNG
Sbjct: 66 G----VCITGGEPTLSEDLESFIRNIRELGYLIKLDTNGYRP 103
>gi|255692128|ref|ZP_05415803.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides finegoldii
DSM 17565]
gi|260622147|gb|EEX45018.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides finegoldii
DSM 17565]
Length = 232
Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 33/188 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GCN +C +C DT I G G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPE 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K G +GGEP Q VPL++ L ++G + +++NG I +
Sbjct: 43 EIVRMAMSQRPFFGKRG-GVTFSGGEPTFQAKALVPLVRELKEKGMHVCIDSNGGIWNEE 101
Query: 127 GIDWICVSPKAGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFS----LQPMDGP 179
+ ++ D+K Q L + + ++ + + F L P
Sbjct: 102 VEELFKLTDLVLLDIKEFNPARHQALTGRSNEQTIRTAAWLEENEKPFWLRYVLVPGYSD 161
Query: 180 FLEENTNL 187
F E+ L
Sbjct: 162 FEEDIRRL 169
>gi|227892250|ref|ZP_04010055.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
ATCC 11741]
gi|227865972|gb|EEJ73393.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
ATCC 11741]
Length = 278
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 54/234 (23%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C+FC + G +
Sbjct: 25 ETFGAVDGPGIR------FVVFMQGCH-----------MRCKFCHNPDTW-KTRVGSQMT 66
Query: 67 VDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+++ + + + L+GGE LLQ+D + L + + G ++T G
Sbjct: 67 TEEVLN--KALPYRSFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCG-QP 123
Query: 124 PPQGIDWICV-------SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------- 169
+ W + D+K E K + N + + +
Sbjct: 124 FTRREPWFSKFNELMDYTDILLVDIKHINSDEHKRLTGFPNDNILDMCEYLSSIGKPVWI 183
Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNP-KW---------RLSVQTHKF--IGIR 211
R L P +E Y +N + V HK+ +GIR
Sbjct: 184 RHVLIPG-ITDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGV--HKYQEMGIR 234
>gi|254425081|ref|ZP_05038799.1| pyruvate formate-lyase 1-activating enzyme [Synechococcus sp. PCC
7335]
gi|196192570|gb|EDX87534.1| pyruvate formate-lyase 1-activating enzyme [Synechococcus sp. PCC
7335]
Length = 261
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC L +C++C G
Sbjct: 28 VETCGTVDGPGI---RFVIF--TQGCRL-----------RCQYCHNPDTR-DPHGGKAVT 70
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
V+ L I++ G ++GGEPLLQ + + Q G A++T+G
Sbjct: 71 VEALIQEIKQYRTYMHSSGGGVTVSGGEPLLQPEFVREIFQQCQAEGIHTALDTSGY 127
>gi|265762770|ref|ZP_06091338.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
gi|263255378|gb|EEZ26724.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 2_1_16]
gi|301162337|emb|CBW21882.1| putative pyruvate formate-lyase 1 activating enzyme [Bacteroides
fragilis 638R]
Length = 241
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GCN +C +C DT I+ G
Sbjct: 8 ESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTA 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + Q K+G +GGEP Q +PL + L + G I ++TNG +
Sbjct: 48 TDPEEIVRMAVSQKAFFGKKG-GITFSGGEPTFQAKSLIPLFKRLKEAGIHICLDTNGGL 106
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSL 173
+ + ++ D+K + + + + + ++ + + F L
Sbjct: 107 WNNDVEELLELTDLVLLDIKEFNPEHHQSLTGRSNEQTLKTAAWLETNHKPFWL 160
>gi|153940083|ref|YP_001392935.1| radical SAM domain-containing protein [Clostridium botulinum F str.
Langeland]
gi|152935979|gb|ABS41477.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
gi|295320913|gb|ADG01291.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
Length = 278
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 40/186 (21%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-QCRFCDT---------- 52
+ +I F ++ G G A+F F GCN + + C+ C T
Sbjct: 6 VNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV 60
Query: 53 ----DFVGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
D+V K G R + ++I++ T ++GG
Sbjct: 61 EFLGDYVKWDENKCKNCGLCLKKCKNNCGPRNKYMSVGEIIKKILKTKPF-ISGITVSGG 119
Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
E LQ D + L + + G I V+TNG+++ + + A D+K +E K+
Sbjct: 120 ECTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKM 179
Query: 152 VFPQVN 157
+ + N
Sbjct: 180 LTKRNN 185
>gi|53712629|ref|YP_098621.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
YCH46]
gi|52215494|dbj|BAD48087.1| pyruvate formate-lyase activating enzyme [Bacteroides fragilis
YCH46]
Length = 241
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 29/174 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GCN +C +C DT I+ G
Sbjct: 8 ESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IEAKGGTA 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTI 122
+ +++ + Q K+G +GGEP Q +PL + L ++G I ++TNG +
Sbjct: 48 TDPEEIVRMAVSQKAFFGKKG-GITFSGGEPTFQAKSLIPLFKRLKEKGIHICLDTNGGL 106
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSL 173
+ + ++ D+K + + + + + ++ + + F L
Sbjct: 107 WNNDVEELLELTDLVLLDIKEFNPEHHQSLTGRSNEQTLKTAAWLETNHKPFWL 160
>gi|195953775|ref|YP_002122065.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Hydrogenobaculum sp. Y04AAS1]
gi|195933387|gb|ACG58087.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Hydrogenobaculum sp. Y04AAS1]
Length = 234
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCNL +C +C + ++ T+ + D++ +L+ + E
Sbjct: 31 FGGCNL-----------RCPYCHNKDIVLKNTEP--LDTDEVFELLISRKHLIEW----V 73
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
++GGEP + V ++ L GF+I ++TNGT
Sbjct: 74 CISGGEPTIYEDKLVDFVKNLKTAGFKIKLDTNGTKP 110
>gi|148381517|ref|YP_001256058.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
gi|148291001|emb|CAL85138.1| putative dehydratase/lyase activating enzyme [Clostridium botulinum
A str. ATCC 3502]
Length = 279
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 42/187 (22%)
Query: 2 KLYS--IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQ 46
+ + +I F ++ G G A+F F GCN + +
Sbjct: 1 MMLRGLVNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFV 55
Query: 47 CRFCDTDFVG----IQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRY 87
C + +F+G K G R + ++I+E T
Sbjct: 56 CPYGAVEFLGDSVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPF-ISG 114
Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
++GGE LQ D + L + + G I V+TNG+++ + + A D+K
Sbjct: 115 ITVSGGECTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFD 174
Query: 146 GQELKLV 152
E K++
Sbjct: 175 SDEHKML 181
>gi|182701939|ref|ZP_02618322.2| radical SAM domain protein [Clostridium botulinum Bf]
gi|237797038|ref|YP_002864590.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
gi|182673213|gb|EDT85174.1| radical SAM domain protein [Clostridium botulinum Bf]
gi|229263329|gb|ACQ54362.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
Length = 278
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 40/181 (22%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFCDT 52
+ +I F ++ G G A+F F GCN + + C +
Sbjct: 6 VNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV 60
Query: 53 DFVG----IQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+F+G K G R + ++I+E T ++GG
Sbjct: 61 EFLGDSVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPF-ISGITVSGG 119
Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
E LQ D + L + + G I ++TNG+++ + + A D+K +E K+
Sbjct: 120 ECTLQKDFLIDLFEKIKLLGLTIFIDTNGSLDFSKNPKLTELMDMAMIDVKSFDNEEHKM 179
Query: 152 V 152
+
Sbjct: 180 L 180
>gi|297569532|ref|YP_003690876.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfurivibrio alkaliphilus AHT2]
gi|296925447|gb|ADH86257.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfurivibrio alkaliphilus AHT2]
Length = 203
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GRVA GCN +C +C + G + I +
Sbjct: 16 GRVAAVIFTQGCNF-----------RCPWCHNAELIPAAAPAG--ADLYAPEEILARLAA 62
Query: 81 GEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ V++GGEP L + + + K G + V++NG+
Sbjct: 63 RRNKLGGAVISGGEPTLQPDLLDFCREIKKLGLAVKVDSNGSRPEI 108
>gi|237710756|ref|ZP_04541237.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
9_1_42FAA]
gi|229455478|gb|EEO61199.1| pyruvate formate-lyase activating enzyme [Bacteroides sp.
9_1_42FAA]
Length = 168
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 21/128 (16%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E T G G R+ VF GCN +C +C
Sbjct: 1 MIRVHSYESMGTFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDTIDTKG 44
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
+ +D++ + Q K+G +GGEP LQ +PL Q L ++ I ++T
Sbjct: 45 ESTETTIDEIVRMAVSQKAFFGKKG-GVTFSGGEPTLQAKALIPLFQRLKEQSIHICIDT 103
Query: 119 NGTIEPPQ 126
NG+I +
Sbjct: 104 NGSIWNEE 111
>gi|189467295|ref|ZP_03016080.1| hypothetical protein BACINT_03682 [Bacteroides intestinalis DSM
17393]
gi|189435559|gb|EDV04544.1| hypothetical protein BACINT_03682 [Bacteroides intestinalis DSM
17393]
Length = 232
Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 33/188 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GC +C +C DT I G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPPE 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K+G +GGEP LQ +PL + L G I ++TNG I +
Sbjct: 43 EILQMAISQKAFFGKKG-GITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIWNEK 101
Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGP 179
+ + ++ DLK + K + N + + E R+ L P
Sbjct: 102 VEELLSLTDLVLLDLKEFNPERHKKLTGCSNTKTLHTAAWLEEQNRPFWLRYVLVPGYSD 161
Query: 180 FLEENTNL 187
F E+ +L
Sbjct: 162 FEEDIRSL 169
>gi|158333639|ref|YP_001514811.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina
MBIC11017]
gi|158303880|gb|ABW25497.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina
MBIC11017]
Length = 270
Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E ++ G G F F GC L +C +C T G
Sbjct: 37 VETCGSVDGPGLR------FVVFMQGCPL-----------RCLYCHNPDCR-DVTGGQVT 78
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V+ L I+ + G ++GGEPLLQ + L++ G A++T+G +
Sbjct: 79 TVEALIAEIQRYRSYMQASGGGVTVSGGEPLLQPEFVAELMRQCQALGIHTALDTSGFSD 138
>gi|170755341|ref|YP_001782853.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1
str. Okra]
gi|169120553|gb|ACA44389.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1
str. Okra]
Length = 232
Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ +G ++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLKILKKCKNQGIHTLLDTSG 104
>gi|259046654|ref|ZP_05737055.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens
ATCC 49175]
gi|259036819|gb|EEW38074.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens
ATCC 49175]
Length = 254
Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 49/209 (23%)
Query: 1 MKLYSIK------EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTD 53
M + E F ++ G G F F GC +C FC
Sbjct: 1 MMSEPVTGYIHSTESFGSVDGPGIR------FVTFMQGC-----------RMRCEFCHNP 43
Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG 111
G + + L ++ + G K ++GGEPLLQ+D + + K G
Sbjct: 44 DTWNIGGGHPITSQELLDQALQYRAFWGRKG--GVTVSGGEPLLQIDFLIDFFKRCKKAG 101
Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
+++ G + + + ++ + D E+
Sbjct: 102 VHTTLDSCGM----------------PFTYDEPFFSKFEELLEYTDLILLDIKHIDDEQH 145
Query: 172 SLQPMDGPFLEENTNLAISYCFQN--PKW 198
+ G + LA Y P W
Sbjct: 146 K--KLTGWTNKNILQLA-EYLSDKGQPVW 171
>gi|226951033|ref|YP_002806124.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
gi|226843056|gb|ACO85722.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 278
Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 40/186 (21%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-QCRFCDT---------- 52
+ +I F ++ G G A+F F GCN + + C+ C T
Sbjct: 6 VNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV 60
Query: 53 ----DFVGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
D+V K G R + ++I++ T ++GG
Sbjct: 61 EFLGDYVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKKILKTKPF-ISGITVSGG 119
Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
E LQ D + L + + G I V+TNG+++ + + A D+K +E K+
Sbjct: 120 ECTLQKDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDNEEHKM 179
Query: 152 VFPQVN 157
+ + N
Sbjct: 180 LTKRNN 185
>gi|329954696|ref|ZP_08295756.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides clarus YIT
12056]
gi|328527237|gb|EGF54241.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides clarus YIT
12056]
Length = 232
Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 26/118 (22%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GC +C +C DT I G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDAKGGTPTPAN 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
++ + Q K+G +GGEP LQ +PL + L G I ++TNG I
Sbjct: 43 EILQMAISQKAFFGKKG-GITFSGGEPTLQAEALIPLFRDLKANGIHICLDTNGGIWN 99
>gi|323343351|ref|ZP_08083578.1| pyruvate formate-lyase activating enzyme [Prevotella oralis ATCC
33269]
gi|323095170|gb|EFZ37744.1| pyruvate formate-lyase activating enzyme [Prevotella oralis ATCC
33269]
Length = 283
Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G R +F GC +CR+C + +K +
Sbjct: 47 VESFGSVDGPGI---RFVIF--LKGC-----------RMRCRYCHNPDTWDKHSK----D 86
Query: 67 VDQLADLIEEQWITGEKEG--RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ +LIE+ G ++GGE LLQ+D + L + K G ++T+
Sbjct: 87 MRSADELIEQAQRYRSYWGAKGGITVSGGEALLQIDFLIDLFRKAKKLGINTCLDTS 143
>gi|291326420|ref|ZP_06124398.2| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
DSM 1131]
gi|291314456|gb|EFE54909.1| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
DSM 1131]
Length = 265
Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 33/194 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHGGNIVT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A K ++TNG +
Sbjct: 72 VEELMKEAVTYRHFMNATGGGVTASGGEAILQAEFVRDWFRACKKENIHTCLDTNGFVRR 131
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
+ DL + +++ Q V N+ +F R+ + N
Sbjct: 132 YDP---VIDELMDVTDLVMLDLKQIDDEIHQKLVGVSNHRTLEFARY--------LAKRN 180
Query: 185 TNLAISYCFQNPKW 198
+ Y P W
Sbjct: 181 QKTWVRYVVV-PGW 193
>gi|227496243|ref|ZP_03926540.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
urogenitalis DSM 15434]
gi|226834231|gb|EEH66614.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
urogenitalis DSM 15434]
Length = 294
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 32/197 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L ++C + G ++L
Sbjct: 66 VDGPGTRM---TVF--LNGCPLRC-----------QYCHNPDTFLM-KDGEPVEAEELLR 108
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT------IEP 124
+ L+GGE L+Q L++ K G ++T+G E
Sbjct: 109 RMRRYRGVFRASKGGITLSGGEVLMQPAFAGRLLEGAKKMGIHTCIDTSGFLGANASDEM 168
Query: 125 PQGIDWICVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
+D + + K+G + K ++L + I + RF L P
Sbjct: 169 LDNVDLVLLDVKSGDEETYKRVTGRQLAPTIAFGDRLAAKGIEI-WARFVLVPG-LTDDP 226
Query: 183 ENTNLAISYCFQNPKWR 199
EN +WR
Sbjct: 227 ENIEKVAQIIE---RWR 240
>gi|20093627|ref|NP_613474.1| pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri
AV19]
gi|19886493|gb|AAM01404.1| Pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri
AV19]
Length = 219
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 19/109 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GC L +C +C G + +V+ + +E+ + +
Sbjct: 25 TQGCPL-----------RCPWCHNPETR-DPNGGKKADVETILRDVEKYAVYLDA----L 68
Query: 89 VLTGGEPLLQVDVPLI---QALNKRGFEIAVETNGTIEPPQGIDWICVS 134
+++GGEPLLQ L + G ++ ++T+G G
Sbjct: 69 IVSGGEPLLQPCEELKALARGARGLGLKVVLDTSGFPPDRLGKVISSFD 117
>gi|223985353|ref|ZP_03635423.1| hypothetical protein HOLDEFILI_02729 [Holdemania filiformis DSM
12042]
gi|223962679|gb|EEF67121.1| hypothetical protein HOLDEFILI_02729 [Holdemania filiformis DSM
12042]
Length = 402
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN +C FC + + ++L D + + E
Sbjct: 196 TGGCNF-----------RCPFCQNSDLVFLAENMAQIPKEELFDFLNRRQGILEG----I 240
Query: 89 VLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQGIDW 130
++GGEPLLQ + + + + + G+ + ++TNG+
Sbjct: 241 CISGGEPLLQPGIEVFLRQIKELGYPVKLDTNGSFPDRLEHLI 283
>gi|328943331|ref|ZP_08240796.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
15829]
gi|327491300|gb|EGF23074.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
15829]
Length = 294
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 24/130 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G VFC GC +C++C T G R +V
Sbjct: 24 ETMGTVDGPGTRM---VVFC--QGCPF-----------RCKYCHNPETWAFDT-GQRMSV 66
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR---GFEIAVETNGTI 122
+L + + +GGEPL Q + L +A ++ ++++G
Sbjct: 67 AELMKVYDRNRPF--YRRGGITASGGEPLAQPNFIAALFKAAHEDPKGRIHTCLDSSGAT 124
Query: 123 EPPQGIDWIC 132
P+ +++
Sbjct: 125 FNPRHPEYVS 134
>gi|297571030|ref|YP_003696804.1| pyruvate formate-lyase activating enzyme [Arcanobacterium
haemolyticum DSM 20595]
gi|296931377|gb|ADH92185.1| pyruvate formate-lyase activating enzyme [Arcanobacterium
haemolyticum DSM 20595]
Length = 308
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 29/191 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ F F+GC L +C +C ++ +G + +
Sbjct: 80 VDGPGT---RLTTF--FAGCPL-----------RCLYCHNPDT-LKMKEGTAVRATDMLE 122
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT------IEP 124
I +GGEP++Q L+ + G AV+T+G E
Sbjct: 123 KIARYKAVFTVSKGGVTFSGGEPMMQPKFLARLLAGCKEIGIHTAVDTSGFLGVNMTEEM 182
Query: 125 PQGIDWICVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
+D + K+G + K ++L EN + RF L P
Sbjct: 183 LANVDLFLLDVKSGVPEQYKRTTGRDLAPTLAFGKRLVENGKKI-WIRFVLVPG-LTDAP 240
Query: 183 ENTNLAISYCF 193
EN N
Sbjct: 241 ENVNAVADIVQ 251
>gi|224367599|ref|YP_002601762.1| PflA [Desulfobacterium autotrophicum HRM2]
gi|223690315|gb|ACN13598.1| PflA [Desulfobacterium autotrophicum HRM2]
Length = 235
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 50/188 (26%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF +GCN C +C + Q + + + I +
Sbjct: 22 VF--TTGCNF-----------VCPYCHNPDLVDQAKSREIKPIGK--EEIFAFLNKRQGL 66
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPK 136
V+TGGEP L I+ + GF + ++TNG+ +D+I + K
Sbjct: 67 IDGVVITGGEPTLQPDLAQFIRDIKALGFRVKLDTNGSRPEIIKSLLEKGLVDYIAMDIK 126
Query: 137 A---GCDLKIKGGQELKLVFPQVNVSPENYIGFDF------------------------E 169
+ G L ++K V + + ++F +
Sbjct: 127 SNLDGYYLAAGRRFDVKTVSAAIKIIMAQAPAYEFRTTCVKPLIDQQKMEDIGAMIKGAK 186
Query: 170 RFSLQPMD 177
+ LQP
Sbjct: 187 HYFLQPCS 194
>gi|288799635|ref|ZP_06405094.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
taxon 299 str. F0039]
gi|288332883|gb|EFC71362.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
taxon 299 str. F0039]
Length = 242
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 26/117 (22%)
Query: 7 KEIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F GC L +CR+C
Sbjct: 9 VETFGSVDGPGIR------FIIFLKGCKL-----------RCRYCHNP----DTWNPDSK 47
Query: 66 NVDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
++ +L+E+ G+ ++GGE LLQ+D + L + K G ++T
Sbjct: 48 DMRSADELLEQALKYRTYWGKKGGITVSGGEALLQMDFMIELFKKAKKLGIHTCIDT 104
>gi|253990313|ref|YP_003041669.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253781763|emb|CAQ84926.1| pyruvate formate lyase activating enzyme 1 [Photorhabdus
asymbiotica]
Length = 246
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 11 ESCGTVDGPGI---RFIVF--FQGC-----------LMRCLYCHNRDTW-DTHGGKDVTV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
++L G +GGE +LQ + +A G ++TNG +
Sbjct: 54 EELIKEATTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACRAEGIHTCLDTNGFVRR 112
>gi|299822951|ref|ZP_07054837.1| pyruvate formate-lyase activating enzyme [Listeria grayi DSM 20601]
gi|299816480|gb|EFI83718.1| pyruvate formate-lyase activating enzyme [Listeria grayi DSM 20601]
Length = 246
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 50/200 (25%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C+FC G R
Sbjct: 12 ETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGKGTER-T 53
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEP 124
+ D + + G ++GGEPLLQ + L + G +++ G
Sbjct: 54 AQDVFDEAIKYKEFWDASGGGITVSGGEPLLQVDFLIELFTLCKQAGVNTTIDSCGG--- 110
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVF--PQVNVSPENYIG---------FDFERFSL 173
C S K+ E+ + ++PE ++ DF +
Sbjct: 111 -------CFSRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTRPNAPILDFANY-- 161
Query: 174 QPMDGPFLEENTNLAISYCF 193
E+N + I +
Sbjct: 162 ------LKEKNQPIWIRHVL 175
>gi|157146410|ref|YP_001453729.1| pyruvate formate lyase-activating enzyme 1 [Citrobacter koseri ATCC
BAA-895]
gi|157083615|gb|ABV13293.1| hypothetical protein CKO_02169 [Citrobacter koseri ATCC BAA-895]
Length = 255
Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 21/120 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 20 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEVT 61
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+ L + G +GGE +LQ + +A K ++TNG +
Sbjct: 62 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKESIHTCLDTNGFVRR 121
>gi|301300126|ref|ZP_07206342.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300215439|gb|ADJ79852.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
CECT 5713]
gi|300852300|gb|EFK79968.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 278
Score = 51.8 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 54/234 (23%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C+FC + G +
Sbjct: 25 ETFGAVDGPGIR------FVAFMQGCH-----------MRCKFCHNPDTW-KTRVGSQMT 66
Query: 67 VDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+++ + + + L+GGE LLQ+D + L + + G ++T G
Sbjct: 67 TEEVLN--KALPYRSFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCG-QP 123
Query: 124 PPQGIDWICV-------SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------- 169
+ W + D+K E K + N + + +
Sbjct: 124 FTRREPWFSKFNELMDYTDILLVDIKHINSDEHKRLTGFPNDNILDMCEYLSSIGKPVWI 183
Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNP-KW---------RLSVQTHKF--IGIR 211
R L P +E Y +N + V HK+ +GIR
Sbjct: 184 RHVLIPG-ITDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGV--HKYQEMGIR 234
>gi|153807860|ref|ZP_01960528.1| hypothetical protein BACCAC_02144 [Bacteroides caccae ATCC 43185]
gi|149129469|gb|EDM20683.1| hypothetical protein BACCAC_02144 [Bacteroides caccae ATCC 43185]
Length = 232
Score = 51.8 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 33/188 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GCN +C +C DT I G G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IAGKGGTPTPPE 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K G +GGEP Q VPL++ L ++G + +++NG +
Sbjct: 43 EIIRMAMSQRPFFGKRG-GITFSGGEPTFQAKALVPLVRELKEKGIHVCIDSNGGLWNED 101
Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFS----LQPMDGP 179
++ D+K +++ + + ++ + + F L P
Sbjct: 102 VEKLFQLTDLVLLDIKEFNPARHQMLTGRSNEQTIRTATWLEENGKPFWLRYVLVPGYSD 161
Query: 180 FLEENTNL 187
F E+ L
Sbjct: 162 FEEDIRQL 169
>gi|329116400|ref|ZP_08245117.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
parauberis NCFD 2020]
gi|326906805|gb|EGE53719.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
parauberis NCFD 2020]
Length = 263
Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 49/200 (24%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNKSQ-- 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ D++ E G+ +T GGE +LQ+D L G ++T G
Sbjct: 58 ERTVKDVLNEALQYKHFWGKNGGITVSGGEAMLQIDFITALFTEAKALGIHTTLDTCGFA 117
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QP---- 175
+ ++L + ++ + D E+ + QP
Sbjct: 118 YRAT----------------PEYHEKLDTLLAVTDLILLDLKEIDEEQHKIVTRQPNKNI 161
Query: 176 --MDGPFLEENTNLAISYCF 193
E+ + I +
Sbjct: 162 LLFAQYLSEKGIPVWIRHVL 181
>gi|157363297|ref|YP_001470064.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermotoga lettingae TMO]
gi|157313901|gb|ABV33000.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermotoga lettingae TMO]
Length = 233
Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCNL +C +C + + ++ I+
Sbjct: 20 STVFI--SGCNL-----------RCPYCHNSMLVTVDKSLAQTKWKEVLAWIKSNRKLIN 66
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP 125
+TGGEP L+ D+ +I + G ++ ++TNGT
Sbjct: 67 A----VCITGGEPTLRKDLYLMIHLAKELGIKVKLDTNGTQPYI 106
>gi|220931944|ref|YP_002508852.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Halothermothrix orenii H 168]
gi|219993254|gb|ACL69857.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Halothermothrix orenii H 168]
Length = 231
Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCNL +C +C G+ + L DL+ E +K
Sbjct: 22 VF--TYGCNL-----------RCPYCHN--SGLVKNNNKNIDFISL-DLLFEFLRRRKKL 65
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L P I+ + K GF+I ++TNGT
Sbjct: 66 IDGVCITGGEPTLQTGLEPFIRKIKKMGFKIKLDTNGTKP 105
>gi|187736032|ref|YP_001878144.1| pyruvate formate-lyase activating enzyme [Akkermansia muciniphila
ATCC BAA-835]
gi|187426084|gb|ACD05363.1| pyruvate formate-lyase activating enzyme [Akkermansia muciniphila
ATCC BAA-835]
Length = 259
Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 36/195 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKG 62
E T+ G G F SGC S +CR+C DT +V +G
Sbjct: 24 VESCGTVDGPGIR------FVLFLSGC-----------SLRCRYCHNPDTSYVR----RG 62
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
+ D + I + G L+GG+PL Q D +++ K G ++T+G
Sbjct: 63 RTRSADDVLKEIARYRDFLQAAGGGVTLSGGDPLFQPDFAGAVLKGCRKLGLHTCLDTSG 122
Query: 121 T------IEPPQGIDWICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFS 172
E D + + KA + + G EL+ + + R+
Sbjct: 123 HLGVNAGEEMLADTDLVLLDIKAWNPKRYRALTGGELRPTLEFAE-RLASLRKPVWLRYV 181
Query: 173 LQPMDGPFLEENTNL 187
L P LEE L
Sbjct: 182 LVPGVTDNLEEIEEL 196
>gi|309776339|ref|ZP_07671327.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
bacterium 3_1_53]
gi|308915935|gb|EFP61687.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
bacterium 3_1_53]
Length = 231
Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 25/118 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC L +C++C G
Sbjct: 11 ETFGSVDGPGV---RFVIF--LKGCAL-----------RCQYCHNPDTWKCGE-----PD 49
Query: 68 DQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
L+++ G+ +T GGEPLLQ+D + L Q K G ++T G
Sbjct: 50 TDSEQLLKKALRYRSYWGKNGGITVSGGEPLLQIDFLLDLFQQAKKEGIHTVIDTAGN 107
>gi|291520376|emb|CBK75597.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Butyrivibrio fibrisolvens 16/4]
Length = 231
Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN C +C + + Y+ D++ D + ++ +
Sbjct: 20 STIF--TGGCNFK-----------CPYCHNRDLVMPPADVLAYSKDEIFDHLNKKKKILD 66
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP 125
+TGGEP L D+P I + G + ++TNGT
Sbjct: 67 G----VCITGGEPTLHKDLPDFISEIKDLGLLVKLDTNGTNPQM 106
>gi|325856335|ref|ZP_08172051.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
CRIS 18C-A]
gi|325483519|gb|EGC86491.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
CRIS 18C-A]
Length = 246
Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 3 LYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E F ++ G G R +F GC + +CR+C
Sbjct: 7 MLRVHSVESFGSVDGPGI---RFVIF--LKGC-----------AMRCRYCHNPDTW-DRA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
G +VD + + E ++GGE LLQ L + G ++T
Sbjct: 50 GGILRSVDDVLSQALRY-QSYWGEKGGITVSGGEALLQLRPLTELFRKAKSLGVNTCLDT 108
Query: 119 N 119
+
Sbjct: 109 S 109
>gi|227503005|ref|ZP_03933054.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
accolens ATCC 49725]
gi|306836762|ref|ZP_07469723.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
ATCC 49726]
gi|227076066|gb|EEI14029.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
accolens ATCC 49725]
gi|304567349|gb|EFM42953.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
ATCC 49726]
Length = 289
Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F SGC L +C++C ++ G VD +
Sbjct: 61 VDGPGTRM---TMFM--SGCPL-----------RCQYCHNPDT-MEMKTGTLERVDDVVK 103
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT 121
I+ + G ++GGEPL + +++ ++ G ++T+G
Sbjct: 104 RIKRYKPIFQASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGF 154
>gi|224541068|ref|ZP_03681607.1| hypothetical protein CATMIT_00219 [Catenibacterium mitsuokai DSM
15897]
gi|224525992|gb|EEF95097.1| hypothetical protein CATMIT_00219 [Catenibacterium mitsuokai DSM
15897]
Length = 381
Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 30/177 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN C FC + + + + +E++ E
Sbjct: 171 TGGCNFK-----------CPFCHNSDLVFLPENMVEIEQEDVLEFLEKRKNILEG----V 215
Query: 89 VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----------PQGIDWICVSPK 136
+TGGEPLLQ V ++ + G+ I ++TNG+ I +PK
Sbjct: 216 CITGGEPLLQAGIVDFLRVIKDMGYSIKLDTNGSFPNKLKELVEDGLVDYVAVDIKNAPK 275
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
G L + V EN++ ++F + E + L +
Sbjct: 276 KYNKTIGLEGYRLDSIKTTVQYLLENHVDYEFRTTI---IKEFHTENDMRLIGEWIK 329
>gi|254508526|ref|ZP_05120644.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
16]
gi|219548551|gb|EED25558.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
16]
Length = 220
Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 14/100 (14%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GC +C +C G VD++ + + G
Sbjct: 2 QGC-----------LMRCMYCHNRDTW-DTHGGKEVTVDEIINEAKSYRHFMNASGGGVT 49
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG 127
+GGE +LQ + +A G ++TNG I
Sbjct: 50 CSGGEAMLQPEFVRDFFRAAQSEGIHTCLDTNGYIRKHTD 89
>gi|288870623|ref|ZP_06114741.2| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium hathewayi DSM 13479]
gi|288866496|gb|EFC98794.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium hathewayi DSM 13479]
Length = 260
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITG 81
+F GCN +C FC G+ G D L ++ +
Sbjct: 49 ATIF--LGGCNF-----------RCPFCHN--SGLLGNDAEEAMTEDSLFTFLKRRTSVL 93
Query: 82 EKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIE 123
E +TGGEP L I+ + + G+ I ++TNG
Sbjct: 94 EG----VCITGGEPTLSDDLEEFIRRIRQMGYLIKLDTNGYRP 132
>gi|77408625|ref|ZP_00785359.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
COH1]
gi|77172743|gb|EAO75878.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
COH1]
Length = 131
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 24/131 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ D+++E G+ ++GGE +L++D L K G ++T G
Sbjct: 58 ERTVEDVLKEALRYKHFWGKDGGITVSGGEAMLRIDFITALFIEAKKLGIHTTLDTCGFA 117
Query: 123 EPPQGIDWICV 133
+ +
Sbjct: 118 YRAHQNTMLSL 128
>gi|320547352|ref|ZP_08041643.1| pyruvate formate-lyase activating enzyme [Streptococcus equinus
ATCC 9812]
gi|320448050|gb|EFW88802.1| pyruvate formate-lyase activating enzyme [Streptococcus equinus
ATCC 9812]
Length = 262
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 22/127 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC +C++C + R V
Sbjct: 17 ESFGSVDGPGV---RFVIFM--QGC-----------KMRCQYCHNPDTWALESNKSR--V 58
Query: 68 DQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+ D++ E G +T GGE +LQ+D L + G ++T G
Sbjct: 59 RTVDDVLAEALRYKHFWGENGGITVSGGEAMLQIDFVTALFTKAKELGIHCTLDTCGFTF 118
Query: 124 PPQGIDW 130
Sbjct: 119 RDTPEYH 125
>gi|283856503|ref|YP_163304.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
mobilis ZM4]
gi|283775507|gb|AAV90193.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 263
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 24/172 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
EI + G G F +GC L +C++C G
Sbjct: 31 EIGGAVDGPGVR------FVLFLAGCAL-----------RCQYCHNPDSWF-LKNGRAVT 72
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+ ++ + + ++ G ++GGEPL+Q + L++A G A++T G +
Sbjct: 73 LAEMMEEVASYADFLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGA 132
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173
+ + D+K + K V Q ++ + + L
Sbjct: 133 QADDALLSNTDLVLLDIKAFNDKRYKALTGVELQPTLAFAKRLAALKKPVWL 184
>gi|269956682|ref|YP_003326471.1| pyruvate formate-lyase activating enzyme [Xylanimonas
cellulosilytica DSM 15894]
gi|269305363|gb|ACZ30913.1| pyruvate formate-lyase activating enzyme [Xylanimonas
cellulosilytica DSM 15894]
Length = 334
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 25/141 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L +C ++ G DQL
Sbjct: 92 VDGPGTRM---TVF--LNGCPLRCL-----------YCHNPDT-LEMKDGEPVTADQLLT 134
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGT------IEP 124
I+ ++GGE L Q + + G A++T+G E
Sbjct: 135 RIKRYVPAFTATQGGLTISGGEVLQQPAFAARLLRGAKEMGVHTAIDTSGFLGAAMTDEM 194
Query: 125 PQGIDWICVSPKAGCDLKIKG 145
D + + K+G +
Sbjct: 195 IADTDLVLLDIKSGDPDIYRR 215
>gi|241762442|ref|ZP_04760520.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373036|gb|EER62694.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 270
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 24/172 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
EI + G G F +GC L +C++C G
Sbjct: 38 EIGGAVDGPGVR------FVLFLAGCAL-----------RCQYCHNPDSWF-LKNGRAVT 79
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
+ ++ + + ++ G ++GGEPL+Q + L++A G A++T G +
Sbjct: 80 LAEMMEEVASYADFLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGA 139
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173
+ + D+K + K V Q ++ + + L
Sbjct: 140 QADDALLSNTDLVLLDIKAFNDKRYKALTGVELQPTLAFAKRLAALKKPVWL 191
>gi|281423385|ref|ZP_06254298.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
gi|281402721|gb|EFB33552.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
Length = 261
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 23/128 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C FC + K
Sbjct: 27 ESFGSVDGPGIR------FLIFLQGCP-----------MRCLFCHNPDTW-KQDKTRPMT 68
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D+L + E+ E ++GGE LLQ+D + L + + R ++T+
Sbjct: 69 ADELLNQAEKYRSY-WGEKGGITVSGGEALLQIDFLIELFEKAHARSINTCLDTS-AQPF 126
Query: 125 PQGIDWIC 132
+ W
Sbjct: 127 TRKDTWFT 134
>gi|330508293|ref|YP_004384721.1| putative molybdenum cofactor biosynthesis protein A [Methanosaeta
concilii GP-6]
gi|328929101|gb|AEB68903.1| probable molybdenum cofactor biosynthesis protein A [Methanosaeta
concilii GP-6]
Length = 307
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 25/175 (14%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + +C +C + GG D + + + E R LTGGEPLL+ D+
Sbjct: 19 RCNLKCIYC---HHEGELLPGGEIPGDMVVSIAKA---AAELGMRSVKLTGGEPLLRKDL 72
Query: 102 PLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG-----GQEL 149
LI A + +I++ TNG G+D + VS + + +L
Sbjct: 73 DLIIARIPQSLDISITTNGILLAERAEALARAGLDRVNVSLDSLQPNRYCQITGGSPGDL 132
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
+ V ++ S E D L + E I +C + L +Q
Sbjct: 133 EKVLAGIDASRE----ADLLPIKLNFVVLKRNESEVPEMIDFCRRRG---LILQL 180
>gi|90962847|ref|YP_536762.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
UCC118]
gi|90822041|gb|ABE00679.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
UCC118]
Length = 278
Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 54/234 (23%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C+FC + G +
Sbjct: 25 ETFGAVDGPGIR------FVAFMQGCH-----------MRCKFCHNPDTW-KTRVGSQMT 66
Query: 67 VDQLADLIEEQWITGEKEGR-YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+++ + + + L+GGE LLQ+D + L + + G ++T G
Sbjct: 67 TEEVLN--KALPYRSFWGDKGGITLSGGEILLQIDFALELFKMCKEEGISTCLDTCG-QP 123
Query: 124 PPQGIDWICV-------SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE------- 169
+ W + D+K E K + N + + +
Sbjct: 124 FTRREPWFSKFNELMDYTDILLVDIKHINSDEHKRLTGFPNDNILDMCEYLSSIGKPVWI 183
Query: 170 RFSLQPMDGPFLEENTNLAISYCFQNP-KW---------RLSVQTHKF--IGIR 211
R L P +E Y +N + V HK+ +GIR
Sbjct: 184 RHVLIPG-ITDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGV--HKYQEMGIR 234
>gi|307718379|ref|YP_003873911.1| hypothetical protein STHERM_c06800 [Spirochaeta thermophila DSM
6192]
gi|306532104|gb|ADN01638.1| hypothetical protein STHERM_c06800 [Spirochaeta thermophila DSM
6192]
Length = 240
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G ++ GCNL +C +C + ++G +++ + +
Sbjct: 19 GMLSAVLFTGGCNL-----------RCPYCHNPEL-VEGDPEDFLPWEEIRAFLTRRRGI 66
Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
+ V TGGEPLL+ +P LI+ + G+ ++TNGT+
Sbjct: 67 L----KGVVFTGGEPLLKGFLPSLIEEVRGMGYACKLDTNGTLPQ 107
>gi|71907723|ref|YP_285310.1| radical SAM family protein [Dechloromonas aromatica RCB]
gi|71847344|gb|AAZ46840.1| Radical SAM [Dechloromonas aromatica RCB]
Length = 264
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 20/116 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T G G SGC + +C +C + G V
Sbjct: 33 ETFGTADGPGIR-----YVLFLSGCPM-----------RCLYCHNPDTWHR-QDGTLTPV 75
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ + I +G L+GGEPL+Q +++ G A++T+G
Sbjct: 76 EDVLADIAGYRGFIRSQG-GVTLSGGEPLVQPKFCKAILRGCKAMGLHTALDTSGY 130
>gi|317128688|ref|YP_004094970.1| (formate-C-acetyltransferase)-activating enzyme [Bacillus
cellulosilyticus DSM 2522]
gi|315473636|gb|ADU30239.1| (Formate-C-acetyltransferase)-activating enzyme [Bacillus
cellulosilyticus DSM 2522]
Length = 245
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GC L C+FC+ + + + + ++I +
Sbjct: 25 LQGCPLM-----------CQFCNNPDTWHKRSGLYIGSKLMINEIINYTPYMRTIKNSGV 73
Query: 89 VLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
V++GGEPL+Q + + K G + + T+G++ P + I V+ ++K
Sbjct: 74 VISGGEPLMQPEFTYALLKQCKKLGLKTTLITSGSLIPNNINEIIDVTDLVILNIKHMNE 133
Query: 147 QEL 149
QE
Sbjct: 134 QEH 136
>gi|171780238|ref|ZP_02921142.1| hypothetical protein STRINF_02026 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281586|gb|EDT47021.1| hypothetical protein STRINF_02026 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 262
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 20/130 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYN 66
E F ++ G G R +F GC +C++C ++
Sbjct: 17 ESFGSVDGPGV---RFVIFM--QGC-----------KMRCQYCHNPDTWALETNNSRERT 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD + E ++GGE +LQ++ L + G ++T G
Sbjct: 61 VDDVLAEALRYRHF-WGENGGITVSGGEAMLQIEFVTALFTKAKELGIHCTLDTCGFTFR 119
Query: 125 PQGIDWICVS 134
V
Sbjct: 120 DTPEYHKIVD 129
>gi|307705627|ref|ZP_07642478.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
SK597]
gi|307620803|gb|EFN99888.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
SK597]
Length = 264
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 58/197 (29%), Gaps = 43/197 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC+ +C++C ++ K
Sbjct: 19 ESFGSVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMESNKSRER 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD + +G ++GGE LLQ+D + L + G ++T
Sbjct: 62 TVDDVLTEALRYRGFWGNKG-GITVSGGEALLQIDFLIALFTKAKEHGIHCTLDTCAL-- 118
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
K + ++ + ++ + + E+ + +
Sbjct: 119 --------------PFRNKPRYLEKFDKLMAVTDLVLLDIKEINEEQHKIV---TSQTNK 161
Query: 184 NTNLAISYCFQ--NPKW 198
N Y P W
Sbjct: 162 NILACAQYLSDIGKPVW 178
>gi|226950642|ref|YP_002805733.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2
str. Kyoto]
gi|226844521|gb|ACO87187.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2
str. Kyoto]
Length = 232
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F GC +C +C G + D++
Sbjct: 13 VDGPGIRV---VVF--FQGC-----------QLRCVYCHNPDTW-DFNAGIEISSDEVLK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+ + + +GGEPL+Q + +++ + A++T+G
Sbjct: 56 KVLRYKPYFK-QVGGITCSGGEPLMQPEFLLEILKKCENQSIHTALDTSG 104
>gi|15669412|ref|NP_248222.1| pyruvate formate-lyase activating enzyme [Methanocaldococcus
jannaschii DSM 2661]
gi|37999505|sp|Q58624|Y1227_METJA RecName: Full=Uncharacterized protein MJ1227
gi|1591858|gb|AAB99230.1| pyruvate formate-lyase activating enzyme (act) [Methanocaldococcus
jannaschii DSM 2661]
Length = 240
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 40/176 (22%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ + GCN +C +C ++ +G V+++ + I+ +
Sbjct: 19 KASAVIFLYGCN-----------MKCPYCHNLKFMLEHKRG--MTVEEIFNDIDFLFADA 65
Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
V++GGEP LQ D + + + ++GF + ++TNGT
Sbjct: 66 ------IVISGGEPTLQKDAVIEIARYAKEKGFPVKIDTNGTHPEVIEELIKNKLIDYVA 119
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ K DG ++ I C +N
Sbjct: 120 IDVKCRFDKYKEFVKCR-------------------EDGEEIKNKILKIIDLCKKN 156
>gi|90425004|ref|YP_533374.1| ribonucleoside-triphosphate reductase, anaerobic-like
[Rhodopseudomonas palustris BisB18]
gi|90107018|gb|ABD89055.1| Ribonucleoside-triphosphate reductase, anaerobic-like
[Rhodopseudomonas palustris BisB18]
Length = 219
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 7/124 (5%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
R S C+ C + D + G+ + + +
Sbjct: 14 RLSTCDWPGQLAATVFCQGCPW-DCAYCHNPQLLPGKADAALPWSEVLQFLQRRRGLLDA 72
Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPKAGCDL 141
V +GGEP LQ +P I+A+ G+ + + T G +DW+ KA +
Sbjct: 73 VVFSGGEPTLQTALPRAIEAVRAMGYRVGLHTGGAYPQRLASILPLLDWVGFDVKAPFED 132
Query: 142 KIKG 145
+
Sbjct: 133 YQRI 136
>gi|153932810|ref|YP_001385892.1| radical SAM domain-containing protein [Clostridium botulinum A str.
ATCC 19397]
gi|153937401|ref|YP_001389299.1| radical SAM domain-containing protein [Clostridium botulinum A str.
Hall]
gi|152928854|gb|ABS34354.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
19397]
gi|152933315|gb|ABS38814.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
Length = 278
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 40/181 (22%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFCDT 52
+ +I F ++ G G A+F F GCN + + C +
Sbjct: 6 VNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVCPYGAV 60
Query: 53 DFVG----IQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+F+G K G R + ++I+E T ++GG
Sbjct: 61 EFLGDSVKWDENKCKNCGLCLEKCKNNCGPRNKYMSVGEIIKEILKTKPF-ISGITVSGG 119
Query: 94 EPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
E LQ D + L + + G I V+TNG+++ + + A D+K E K+
Sbjct: 120 ECTLQRDFLIDLFEKIKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMLDVKSFDSDEHKM 179
Query: 152 V 152
+
Sbjct: 180 L 180
>gi|307254920|ref|ZP_07536742.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306862161|gb|EFM94133.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
Length = 215
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 7/132 (5%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C++C G +V+ L + + G +GGE +LQ++
Sbjct: 1 MRCKYCHNRDTW-DLDGGKEISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
+A G + ++TNG + + DL + ++L Q + N
Sbjct: 60 WFRACKAEGIDTCLDTNGFVRHYSP---VVDEMLEVTDLVMLDLKQLNDEIHQDLIGVSN 116
Query: 163 YIGFDFERFSLQ 174
DF R LQ
Sbjct: 117 KRTLDFAR-YLQ 127
>gi|303237453|ref|ZP_07324019.1| pyruvate formate-lyase 1-activating enzyme [Prevotella disiens
FB035-09AN]
gi|302482403|gb|EFL45432.1| pyruvate formate-lyase 1-activating enzyme [Prevotella disiens
FB035-09AN]
Length = 291
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 26/117 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC + +C++C +
Sbjct: 58 ETFGSVDGPGIR------FIVFLKGC-----------AMRCQYCHNP----DTWEPNSDT 96
Query: 67 VDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ +L+E+ G+ +T GGE LLQ+D + + +G ++T+
Sbjct: 97 LTTADELLEKALRYKSYWGKNGGITVSGGESLLQIDFLIEFFRKAKAKGINTCLDTS 153
>gi|323486377|ref|ZP_08091702.1| pyruvate formate-lyase 1-activating enzyme [Clostridium symbiosum
WAL-14163]
gi|323694999|ref|ZP_08109146.1| pyruvate formate-lyase activating enzyme [Clostridium symbiosum
WAL-14673]
gi|323400359|gb|EGA92732.1| pyruvate formate-lyase 1-activating enzyme [Clostridium symbiosum
WAL-14163]
gi|323500943|gb|EGB16858.1| pyruvate formate-lyase activating enzyme [Clostridium symbiosum
WAL-14673]
Length = 241
Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 20/111 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R +F GC L +CR+C G + L
Sbjct: 4 VDGPGI---RSVIF--LQGCRL-----------RCRYCHNPDTW-DPNGGSLCTAEVLMQ 46
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
++ +G +GGEPLLQ + L++ G ++T G
Sbjct: 47 KLKRFKPYYGSKG-GVTFSGGEPLLQSGFLLELLKLCRSEGISACLDTAGC 96
>gi|313890891|ref|ZP_07824515.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120789|gb|EFR43904.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pseudoporcinus SPIN 20026]
Length = 263
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 24/128 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C T +
Sbjct: 17 ESFGSVDGPGIR------FIIFMQGC-----------KMRCQYCHNPDTWEMETNNSK-- 57
Query: 67 VDQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+ D+++E G+ +T GGE +LQ+D L K G ++T G
Sbjct: 58 ERTVNDVLKEALNYKHFWGKTGGITVSGGEAMLQIDFITALFIQAKKHGVHTTLDTCGFT 117
Query: 123 EPPQGIDW 130
Sbjct: 118 YRATPEYH 125
>gi|167765831|ref|ZP_02437884.1| hypothetical protein CLOSS21_00322 [Clostridium sp. SS2/1]
gi|167712548|gb|EDS23127.1| hypothetical protein CLOSS21_00322 [Clostridium sp. SS2/1]
Length = 250
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C + G +
Sbjct: 13 ETFGLVDGPGVR------FIAFMQGC-----------RMRCKYCHNPETWQENC-GEDWQ 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ L + ++GGEPLLQ+ + + + G A++T+
Sbjct: 55 AEALLKRALRYRMY-WGSDGGITVSGGEPLLQIEFLIEFFKLAKQEGIHTALDTS 108
>gi|171742683|ref|ZP_02918490.1| hypothetical protein BIFDEN_01797 [Bifidobacterium dentium ATCC
27678]
gi|306822547|ref|ZP_07455925.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium
ATCC 27679]
gi|171278297|gb|EDT45958.1| hypothetical protein BIFDEN_01797 [Bifidobacterium dentium ATCC
27678]
gi|304554092|gb|EFM42001.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium
ATCC 27679]
Length = 298
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y ++ +
Sbjct: 69 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LEAMI 111
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
I+ + G +GGE ++Q + +A + G ++T+G + +
Sbjct: 112 KKIDRYADLFKATGGGITFSGGESMMQPAFVSRVFRASKEMGVHTCLDTSGFLNRNYTDE 171
Query: 130 WI 131
I
Sbjct: 172 MI 173
>gi|254787842|ref|YP_003075271.1| pyruvate formate-lyase 1-activating enzyme [Teredinibacter turnerae
T7901]
gi|237686841|gb|ACR14105.1| pyruvate formate-lyase 1-activating enzyme [Teredinibacter turnerae
T7901]
Length = 265
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
L G G VF GC +C +C G Y+V ++ +
Sbjct: 31 LDGPGLRV---VVF--LQGC-----------QFRCLYCHNRDSW-DLHAGSLYSVQEVIE 73
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ + ++GGE LLQ L + L K GF ++TNG
Sbjct: 74 QVLPFAGFLQSSNGGVTVSGGEALLQWEFLTLLFKQLKKLGFNTCLDTNGY 124
>gi|317496852|ref|ZP_07955182.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316895864|gb|EFV18016.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 250
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C + G +
Sbjct: 13 ETFGLVDGPGVR------FIAFMQGC-----------RMRCKYCHNPETWQENC-GEDWQ 54
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+ L + ++GGEPLLQ+ + + + G A++T+
Sbjct: 55 AEALLKRALRYRMY-WGSDGGITVSGGEPLLQIEFLIEFFKLAKQEGIHTALDTS 108
>gi|284048541|ref|YP_003398880.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidaminococcus fermentans DSM 20731]
gi|283952762|gb|ADB47565.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidaminococcus fermentans DSM 20731]
Length = 236
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL +C +C + + + +
Sbjct: 24 TGGCNL-----------RCPYCHNSELLEGEMPSQDM------EEVMAYLDVRKGILDGV 66
Query: 89 VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
V++GGEP LQ VP + L ++G + ++TNG
Sbjct: 67 VISGGEPCLQSDLVPFLARLKEKGLLVKLDTNGCFP 102
>gi|283456246|ref|YP_003360810.1| pyruvate formate-lyase activating enzyme [Bifidobacterium dentium
Bd1]
gi|309801459|ref|ZP_07695586.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium dentium
JCVIHMP022]
gi|283102880|gb|ADB09986.1| pflA1 Pyruvate formate-lyase activating enzyme [Bifidobacterium
dentium Bd1]
gi|308221974|gb|EFO78259.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium dentium
JCVIHMP022]
Length = 293
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y ++ +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LEAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
I+ + G +GGE ++Q + +A + G ++T+G + +
Sbjct: 107 KKIDRYADLFKATGGGITFSGGESMMQPAFVSRVFRASKEMGVHTCLDTSGFLNRNYTDE 166
Query: 130 WI 131
I
Sbjct: 167 MI 168
>gi|188025792|ref|ZP_02959835.2| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
gi|188020518|gb|EDU58558.1| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
Length = 273
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 23/168 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 38 ESCGTVDGPGIR------FIVFFQGC-----------LMRCLYCHNRDTW-DTHTGKMVT 79
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L G +GGE +LQ + +A + ++TNG +
Sbjct: 80 VEELMKEAVTYRHFMNATGGGVTASGGEAILQAEFVRDWFRACKAQNIHTCLDTNGFVRR 139
Query: 125 --PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
P + + V+ DLK + + N + + +R
Sbjct: 140 YDPVIDELMEVTDLVMLDLKQLNDDIHQTLVGVSNHRTLEFARYLAKR 187
>gi|303232902|ref|ZP_07319585.1| pyruvate formate-lyase 1-activating enzyme [Atopobium vaginae
PB189-T1-4]
gi|302480994|gb|EFL44071.1| pyruvate formate-lyase 1-activating enzyme [Atopobium vaginae
PB189-T1-4]
Length = 278
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 24/129 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R+ VF GC +C++C T G V
Sbjct: 8 ETMGTVDGPGT---RLVVF--TQGCPF-----------RCKYCHNPETWGFKT-GTTMKV 50
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR---GFEIAVETNGTI 122
++ D+ E +GGEPL Q + +A ++ ++++G
Sbjct: 51 QEIMDIYERNRPF--YRKGGITCSGGEPLAQPHFVGNIFKAAHEDPQGRIHTCLDSSGAT 108
Query: 123 EPPQGIDWI 131
P+ +++
Sbjct: 109 FNPRHPEYV 117
>gi|14141682|dbj|BAB55635.1| pyruvate formate-lyase activating enzyme [Streptococcus bovis]
Length = 262
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 20/126 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYN 66
E F ++ G G R +F GC +C++C ++
Sbjct: 17 ESFGSVDGPGV---RFVIFM--QGC-----------KMRCQYCHNPDTWALETNNSRERT 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD + E ++GGE +LQ++ L + G ++T G
Sbjct: 61 VDDVLAEALRYRHF-WGENGGITVSGGEAMLQIEFVTALFTKAKELGIHCTLDTCGFTFR 119
Query: 125 PQGIDW 130
Sbjct: 120 DTPEYH 125
>gi|329961315|ref|ZP_08299461.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides fluxus YIT
12057]
gi|328531921|gb|EGF58741.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides fluxus YIT
12057]
Length = 232
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 26/141 (18%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GC +C +C DT I G + D
Sbjct: 3 TFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGIPTSPD 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + Q K+G +GGEP LQ +PL + L G I +++NG I +
Sbjct: 43 EILQMAISQKAFFGKKG-GITFSGGEPTLQAEALIPLFKELKANGIHICLDSNGGIWNDK 101
Query: 127 GIDWICVSPKAGCDLKIKGGQ 147
+ ++ D+K +
Sbjct: 102 VEELFSLTDLVLLDIKQFNPE 122
>gi|302390514|ref|YP_003826335.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermosediminibacter oceani DSM 16646]
gi|302201142|gb|ADL08712.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermosediminibacter oceani DSM 16646]
Length = 240
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCN +C +C + G+ G+ D +E + +
Sbjct: 31 TVF--LPGCNF-----------RCPYCHNGPLVT-GSPKGKVPESVFFDYLERRKKLIDG 76
Query: 84 EGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE 123
+TGGEP L D+P KRG ++ ++TNG+
Sbjct: 77 ----VCITGGEPTLWSDLPEFILKLKKRGLKVKLDTNGSRP 113
>gi|306834115|ref|ZP_07467235.1| pyruvate formate-lyase activating enzyme [Streptococcus bovis ATCC
700338]
gi|304423688|gb|EFM26834.1| pyruvate formate-lyase activating enzyme [Streptococcus bovis ATCC
700338]
Length = 262
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYN 66
E F ++ G G R +F GC +C++C ++ K
Sbjct: 17 ESFGSVDGPGI---RFVIFM--QGC-----------KMRCQYCHNPDTWAMETNKSQERT 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD + G ++GGE +LQ++ L + G ++T G
Sbjct: 61 VDDVLAEALRYKHFWGNNG-GITVSGGEAMLQIEFVTALFTKAKELGIHCTLDTCGFAFR 119
Query: 125 PQGIDW 130
Sbjct: 120 DTPEYH 125
>gi|295089884|emb|CBK75991.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium cf. saccharolyticum K10]
Length = 231
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F F GCN +C FC + + ++ + + ++++ E
Sbjct: 20 STIF--FGGCNF-----------RCPFCHNGDLVNGPWEDP-FDPEDVLAFLKKRSGLLE 65
Query: 83 KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE 123
+TGGEP LQ D+ I ++ G + ++TNG
Sbjct: 66 G----VCITGGEPTLQPDLEKLIHSIRSLGLSVKLDTNGYRP 103
>gi|149909997|ref|ZP_01898646.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
PE36]
gi|149807011|gb|EDM66970.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
PE36]
Length = 258
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R VF GC +C +C G V
Sbjct: 23 ESFGSVDGPGI---RYIVFM--QGC-----------LMRCLYCHNRDSW-DLHSGKDTTV 65
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
D+L + G +GGE +LQ + A G ++TNG I
Sbjct: 66 DELIRELISYKAFMLATGGGVTASGGEAMLQPEFVRDFFTAAQAEGVNTCLDTNGYIRKY 125
Query: 126 QG 127
Sbjct: 126 TD 127
>gi|256832626|ref|YP_003161353.1| pyruvate formate-lyase activating enzyme [Jonesia denitrificans DSM
20603]
gi|256686157|gb|ACV09050.1| pyruvate formate-lyase activating enzyme [Jonesia denitrificans DSM
20603]
Length = 310
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 30/195 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F +GC L +C +C ++ G D++
Sbjct: 83 VDGPGTRM---TLF--LAGCPL-----------RCLYCHNPDT-MKMKDGEAVTADEIVK 125
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDW 130
I E G L+GGE L+Q ++ G ++T+G + +
Sbjct: 126 RIARYKGIFEVTGGGLTLSGGEVLMQPAFAANILHQTHEMGIHTTIDTSGFLGAACTDEM 185
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQV-------NVSPENYIGFDFERFSLQPMDGPFLEE 183
+ D+K K V + + + RF L P E
Sbjct: 186 LDDIDLVLLDVKAGDEDTYKKVTGRALQPTLDFGQRLADAGKEIWIRFVLVPG-LTDSWE 244
Query: 184 NTNLAISYCFQNPKW 198
N + W
Sbjct: 245 NVEKVADHVA---NW 256
>gi|323694204|ref|ZP_08108380.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium symbiosum WAL-14673]
gi|323501677|gb|EGB17563.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium symbiosum WAL-14673]
Length = 236
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 20/102 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C FC + ++GT G ++ +++ ++++ E
Sbjct: 26 ATIF--LGGCNF-----------RCPFCHNSDL-LEGTDG-LFSKEEVLTFLKKRAGILE 70
Query: 83 KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L P I+ + G + ++TNG
Sbjct: 71 G----VCITGGEPTLHRDLEPFIREIRSLGLLVKLDTNGYRP 108
>gi|332180934|gb|AEE16622.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Treponema brennaborense DSM 12168]
Length = 252
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL-ADLIEEQWI 79
GRVA GCNL +C +C + G D + A +
Sbjct: 20 GRVAAALFLGGCNL-----------RCPYC----YNTELVTGNALPEDAVSASQVLAHLE 64
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEPPQGI 128
+ V++GGEPLL + G++I ++TNGT+
Sbjct: 65 KRKNVLTGFVISGGEPLLSPVTEYLITQARALGYKIKLDTNGTLPERLSH 114
>gi|291458400|ref|ZP_06597790.1| pyruvate formate-lyase 1-activating enzyme [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291418933|gb|EFE92652.1| pyruvate formate-lyase 1-activating enzyme [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 269
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G F GC + +CR+C ++ R
Sbjct: 32 VESFGSVDGPGTR------FLIFLKGC-----------AMRCRYCHNPDTWDYHSEDMR- 73
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D L D E E ++GG+PL+Q+D + L + +RG ++T+
Sbjct: 74 SADSLLDQAERYREY-WGEDGGITVSGGDPLIQIDFVLQLFEEAKRRGINTCLDTS 128
>gi|288961972|ref|YP_003452282.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510]
gi|288914252|dbj|BAI75738.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510]
Length = 272
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 25/120 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGG 63
E T+ G G R +F SGC L +C +C DT + G
Sbjct: 39 VETGGTVDGPGI---RYVLFM--SGCPL-----------RCLYCHNPDTQHMH----DGT 78
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
R ++ + I ++ L+GGEPL+Q + +++ G A++T+G
Sbjct: 79 RTTSTEILEDIALYAEFLKRAHGGLTLSGGEPLVQPEFTAAILRGAKALGLHTALDTSGF 138
>gi|260885334|ref|ZP_05734801.2| pyruvate formate-lyase 1-activating enzyme [Prevotella tannerae
ATCC 51259]
gi|260852856|gb|EEX72725.1| pyruvate formate-lyase 1-activating enzyme [Prevotella tannerae
ATCC 51259]
Length = 260
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 2 KLYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
+ + E F ++ G G R +F GC + +C++C +
Sbjct: 21 SMLQVHSIESFGSVDGPGI---RFVIF--LKGC-----------AMRCQYCHNPDTWSRA 64
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVE 117
G +VD++ + ++G ++GGE LLQ+ L + G ++
Sbjct: 65 -GGQLRSVDEVLAQAQRFQSYWGEQG-GITVSGGEALLQMPALTELFRKAKDLGINTCLD 122
Query: 118 TN 119
T+
Sbjct: 123 TS 124
>gi|315185591|gb|EFU19360.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Spirochaeta thermophila DSM 6578]
Length = 240
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G ++ GCNL +C +C + ++G +++ + +
Sbjct: 19 GMLSAVLFTGGCNL-----------RCPYCHNPEL-VEGDSEDFLPWEEIRAFLTRRRGI 66
Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
+ V TGGEPLL+ +P LI+ + G+ ++TNGT+
Sbjct: 67 L----KGVVFTGGEPLLKGFLPSLIEEVRGMGYACKLDTNGTLPQ 107
>gi|257792463|ref|YP_003183069.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Eggerthella lenta DSM 2243]
gi|317490330|ref|ZP_07948816.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Eggerthella sp. 1_3_56FAA]
gi|325833502|ref|ZP_08165951.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Eggerthella sp. HGA1]
gi|257476360|gb|ACV56680.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Eggerthella lenta DSM 2243]
gi|316910620|gb|EFV32243.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Eggerthella sp. 1_3_56FAA]
gi|325485426|gb|EGC87895.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Eggerthella sp. HGA1]
Length = 240
Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GCN +C FC + D A I+E +
Sbjct: 20 ATVF--TPGCNF-----------RCPFCHNADLVTGEAGRDGAAADSSALSIDELFAFLG 66
Query: 83 KEG---RYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
K +TGGEPLLQ +++ GF + ++TNG+
Sbjct: 67 KRQGLLDGVCITGGEPLLQSGIDEFCTRVHELGFAVKLDTNGSFP 111
>gi|15903833|ref|NP_359383.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
R6]
gi|116516256|ref|YP_817196.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
D39]
gi|148985556|ref|ZP_01818745.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP3-BS71]
gi|148993163|ref|ZP_01822729.1| purine operon repressor [Streptococcus pneumoniae SP9-BS68]
gi|148998506|ref|ZP_01825947.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP11-BS70]
gi|149007451|ref|ZP_01831094.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP18-BS74]
gi|149012435|ref|ZP_01833466.1| purine operon repressor [Streptococcus pneumoniae SP19-BS75]
gi|168484275|ref|ZP_02709227.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC1873-00]
gi|168487114|ref|ZP_02711622.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC1087-00]
gi|168489981|ref|ZP_02714180.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae SP195]
gi|168492049|ref|ZP_02716192.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC0288-04]
gi|168576624|ref|ZP_02722490.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae MLV-016]
gi|182684911|ref|YP_001836658.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
CGSP14]
gi|225857550|ref|YP_002739061.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae P1031]
gi|225859732|ref|YP_002741242.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae 70585]
gi|225861794|ref|YP_002743303.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae Taiwan19F-14]
gi|298230173|ref|ZP_06963854.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|298254779|ref|ZP_06978365.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|298503747|ref|YP_003725687.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
TCH8431/19A]
gi|307068585|ref|YP_003877551.1| pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae
AP200]
gi|307128175|ref|YP_003880206.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae 670-6B]
gi|307707661|ref|ZP_07644141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
NCTC 12261]
gi|307709730|ref|ZP_07646181.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
SK564]
gi|322377603|ref|ZP_08052093.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. M334]
gi|15459475|gb|AAL00594.1| Pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
R6]
gi|116076832|gb|ABJ54552.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
D39]
gi|147755699|gb|EDK62745.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP11-BS70]
gi|147761023|gb|EDK67992.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP18-BS74]
gi|147763491|gb|EDK70427.1| purine operon repressor [Streptococcus pneumoniae SP19-BS75]
gi|147922276|gb|EDK73397.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP3-BS71]
gi|147928137|gb|EDK79155.1| purine operon repressor [Streptococcus pneumoniae SP9-BS68]
gi|172042468|gb|EDT50514.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC1873-00]
gi|182630245|gb|ACB91193.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
CGSP14]
gi|183569969|gb|EDT90497.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC1087-00]
gi|183571602|gb|EDT92130.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae SP195]
gi|183573670|gb|EDT94198.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC0288-04]
gi|183577629|gb|EDT98157.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae MLV-016]
gi|225721531|gb|ACO17385.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae 70585]
gi|225725207|gb|ACO21059.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae P1031]
gi|225726839|gb|ACO22690.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae Taiwan19F-14]
gi|298239342|gb|ADI70473.1| pyruvate-formate lyase activating enzyme [Streptococcus pneumoniae
TCH8431/19A]
gi|301794919|emb|CBW37380.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
INV104]
gi|301800738|emb|CBW33386.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
OXC141]
gi|306410122|gb|ADM85549.1| Pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae
AP200]
gi|306485237|gb|ADM92106.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae 670-6B]
gi|307616273|gb|EFN95466.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
NCTC 12261]
gi|307619432|gb|EFN98557.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
SK564]
gi|321281368|gb|EFX58378.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. M334]
gi|327389141|gb|EGE87487.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae GA04375]
gi|332071954|gb|EGI82442.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae GA17545]
gi|332072058|gb|EGI82545.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae GA17570]
gi|332072162|gb|EGI82648.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae GA41301]
Length = 264
Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 43/197 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC+ +C++C ++ K
Sbjct: 19 ESFGSVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMESNKSRER 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD + +G ++GGE LLQ+D + L ++G ++T
Sbjct: 62 TVDDVLTEALRYRGFWGNKG-GITVSGGEALLQIDFLIALFTKAKEQGIHCTLDTCAL-- 118
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
K + ++ + ++ + + E+ + +
Sbjct: 119 --------------PFRNKPRYLEKFDKLMAVTDLVLLDIKEINEEQHKIV---TSQTNK 161
Query: 184 NTNLAISYCFQ--NPKW 198
N Y P W
Sbjct: 162 NILACAQYLSDIGKPVW 178
>gi|227486366|ref|ZP_03916682.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
lactolyticus ATCC 51172]
gi|227235547|gb|EEI85562.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
lactolyticus ATCC 51172]
Length = 239
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 26/189 (13%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF SGC L +C FC G V+++
Sbjct: 13 VDGPGIRT----VFF-LSGCPL-----------RCVFCHNPDTQSLDY-GRDVTVEEIVK 55
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ G L+GGEPL + I+AL+K +AV+T+G + D
Sbjct: 56 RALRMKPYFKNGG-GVTLSGGEPLASGAFVLETIRALHKEAIHVAVDTSGVGDEKYYDDI 114
Query: 131 ICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL---EEN 184
+ D+K E+ + + I R ++ + PF+ +E+
Sbjct: 115 AREADLILLDIKHYDPYFFYEITKNYQDKLIKFMESIKKTDTRVWIRHVMMPFVTDTKED 174
Query: 185 TNLAISYCF 193
+ + +
Sbjct: 175 MDGLVDFIR 183
>gi|307710845|ref|ZP_07647272.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
SK321]
gi|307617290|gb|EFN96463.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus mitis
SK321]
Length = 264
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 43/197 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC+ +C++C ++ K
Sbjct: 19 ESFGSVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMESNKSRER 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD + +G ++GGE LLQ+D + L ++G ++T
Sbjct: 62 TVDDVLTEALRYRGFWGNKG-GITVSGGEALLQIDFLIALFTKAKEQGIHCTLDTCAL-- 118
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
K + ++ + ++ + + E+ + +
Sbjct: 119 --------------PFRNKPRYLEKFDKLMAVTDLVLLDIKEINEEQHKIV---TSQTNK 161
Query: 184 NTNLAISYCFQ--NPKW 198
N Y P W
Sbjct: 162 NILACAQYLSDIGKPVW 178
>gi|257784457|ref|YP_003179674.1| pyruvate formate-lyase activating enzyme [Atopobium parvulum DSM
20469]
gi|257472964|gb|ACV51083.1| pyruvate formate-lyase activating enzyme [Atopobium parvulum DSM
20469]
Length = 260
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 24/127 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R+ VF GC +C +C G G +V
Sbjct: 17 ETFGTVDGPGT---RLVVF--TQGCP-----------MRCAYCHNPDTWQFG-IGTETSV 59
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-----DVPLIQALNKRGFEIAVETNGTI 122
++ TGGEPL Q + ++++G
Sbjct: 60 KEILATFNRNR--AFYRNGGITATGGEPLAQPEFVGALFEAAHNDPRGRIHTCLDSSGIA 117
Query: 123 EPPQGID 129
P+ +
Sbjct: 118 YNPETPE 124
>gi|15901799|ref|NP_346403.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
TIGR4]
gi|111658863|ref|ZP_01409484.1| hypothetical protein SpneT_02000034 [Streptococcus pneumoniae
TIGR4]
gi|148989976|ref|ZP_01821251.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
SP6-BS73]
gi|149003635|ref|ZP_01828500.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
SP14-BS69]
gi|169833821|ref|YP_001695330.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae Hungary19A-6]
gi|194397459|ref|YP_002038559.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae G54]
gi|225855466|ref|YP_002736978.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae JJA]
gi|237650994|ref|ZP_04525246.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CCRI 1974]
gi|237822552|ref|ZP_04598397.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CCRI 1974M2]
gi|303254100|ref|ZP_07340215.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS455]
gi|303260349|ref|ZP_07346319.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae SP-BS293]
gi|303262497|ref|ZP_07348439.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae SP14-BS292]
gi|303265128|ref|ZP_07351041.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS397]
gi|303266010|ref|ZP_07351905.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS457]
gi|303268058|ref|ZP_07353859.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS458]
gi|14973483|gb|AAK76043.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
TIGR4]
gi|147758367|gb|EDK65367.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
SP14-BS69]
gi|147924636|gb|EDK75722.1| pyruvate formate-lyase-activating enzyme [Streptococcus pneumoniae
SP6-BS73]
gi|168996323|gb|ACA36935.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae Hungary19A-6]
gi|194357126|gb|ACF55574.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae G54]
gi|225724182|gb|ACO20035.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae JJA]
gi|301802654|emb|CBW35420.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
INV200]
gi|302598933|gb|EFL65964.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS455]
gi|302636397|gb|EFL66890.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae SP14-BS292]
gi|302638515|gb|EFL68980.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae SP-BS293]
gi|302642418|gb|EFL72764.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS458]
gi|302644451|gb|EFL74703.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS457]
gi|302645345|gb|EFL75579.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae BS397]
Length = 264
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 43/197 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC+ +C++C ++ K
Sbjct: 19 ESFGSVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMESNKSRER 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD + +G ++GGE LLQ+D + L ++G ++T
Sbjct: 62 TVDDVLTEALRYRGFWGNKG-GITVSGGEALLQIDFLIALFTKAKEQGIHCTLDTCAL-- 118
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
K + ++ + ++ + + E+ + +
Sbjct: 119 --------------PFRNKPRYLEKFDKLMAVTDLVLLDIKEINEEQHKIV---TSQTNK 161
Query: 184 NTNLAISYCFQ--NPKW 198
N Y P W
Sbjct: 162 NILACAQYLSDIGKPVW 178
>gi|313897775|ref|ZP_07831316.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2]
gi|312957310|gb|EFR38937.1| pyruvate formate-lyase 1-activating enzyme [Clostridium sp. HGF2]
Length = 246
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 25/118 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F GC + +C++C G
Sbjct: 11 ETFGSVDGPGV---RFVIF--LKGC-----------AMRCQYCHNPDTWKCGE-----PD 49
Query: 68 DQLADLIEEQWITGEKEGRYCVLT--GGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
L++ G+ +T GGEPLLQ+D + L Q K ++T G
Sbjct: 50 TDSEALLKRAMRYRSYWGKNGGITVSGGEPLLQIDFLLDLFQKAKKENIHTVLDTAGN 107
>gi|327314094|ref|YP_004329531.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
F0289]
gi|326945639|gb|AEA21524.1| pyruvate formate-lyase 1-activating enzyme [Prevotella denticola
F0289]
Length = 246
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 22/121 (18%)
Query: 3 LYSI--KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + E F ++ G G R +F GC + +CR+C
Sbjct: 7 MLRVHSVESFGSVDGPGI---RFVIF--LKGC-----------AMRCRYCHNPDTW-DRA 49
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
G +VD + + E ++GGE LLQ L G ++T
Sbjct: 50 GGILRSVDDVLSQALRY-QSYWGEKGGITVSGGEALLQLRPLTELFHKAKSLGVNTCLDT 108
Query: 119 N 119
+
Sbjct: 109 S 109
>gi|328883089|emb|CCA56328.1| Pyruvate formate-lyase activating enzyme [Streptomyces venezuelae
ATCC 10712]
Length = 270
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 22/113 (19%)
Query: 13 LQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F SGC L C +C + G R + D +
Sbjct: 42 VDGPGTR------FVTFLSGCPLT-----------CLYCHNPDTW-KMRNGKRTSADAVI 83
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGT 121
+ G ++GGEPLLQ L + ++ G A++T+G
Sbjct: 84 AEAGKYVRFISVSGGGATVSGGEPLLQPVFTGELLHRMKHELGLHTALDTSGF 136
>gi|307699833|ref|ZP_07636884.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus mulieris FB024-16]
gi|307614871|gb|EFN94089.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus mulieris FB024-16]
Length = 278
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G++A GC G +C +F I + +
Sbjct: 14 FSTVD----WPGKLAAVVFLQGCPWNCG-----------YC-QNFAIIDPKAPAQVPESE 57
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
L L+E + + V +GGEP Q + + + GF++ + T G
Sbjct: 58 LWSLLERRAGLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPR 109
>gi|306817627|ref|ZP_07451370.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus mulieris ATCC 35239]
gi|304649669|gb|EFM46951.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus mulieris ATCC 35239]
Length = 278
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G++A GC G +C +F I + +
Sbjct: 14 FSTVD----WPGKLAAVVFLQGCPWNCG-----------YC-QNFAIIDPKAPAQVPESE 57
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
L L+E + + V +GGEP Q + + + GF++ + T G
Sbjct: 58 LWSLLERRAGLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPR 109
>gi|260776178|ref|ZP_05885073.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus
ATCC BAA-450]
gi|260607401|gb|EEX33666.1| pyruvate formate-lyase activating enzyme [Vibrio coralliilyticus
ATCC BAA-450]
Length = 215
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V+++ + + G +GGE +LQ +
Sbjct: 1 MRCMYCHNRDTW-DTHGGKEVTVEEIINEAKSYRHFMNASGGGVTCSGGEAMLQPEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEPPQG 127
++ G ++TNG I
Sbjct: 60 FFRSAKAEGIHTCLDTNGYIRKHTE 84
>gi|227876678|ref|ZP_03994787.1| pyruvate radical-activating enzyme [Mobiluncus mulieris ATCC 35243]
gi|269976206|ref|ZP_06183202.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus mulieris 28-1]
gi|227842575|gb|EEJ52775.1| pyruvate radical-activating enzyme [Mobiluncus mulieris ATCC 35243]
gi|269935535|gb|EEZ92073.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus mulieris 28-1]
Length = 278
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G++A GC G +C +F I + +
Sbjct: 14 FSTVD----WPGKLAAVVFLQGCPWNCG-----------YC-QNFAIIDPKAPAQVPESE 57
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
L L+E + + V +GGEP Q + + + GF++ + T G
Sbjct: 58 LWSLLERRAGLLDG----VVFSGGEPTRQPALLEAARRAKQLGFQVGLHTGGAYPR 109
>gi|189485586|ref|YP_001956527.1| hypothetical protein TGRD_583 [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287545|dbj|BAG14066.1| conserved hypothetical protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 197
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G A GCN+ C +C + N +++ ++++
Sbjct: 16 GTPAAVIFTQGCNML-----------CPYCHNPQLVYPYLFEKTLNENEILYFLKKRQGL 64
Query: 81 GEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
+ V+TGGEP L I+ + F + ++TNGT
Sbjct: 65 L----KGVVITGGEPTLQNDLFNFIKKIKNLKFLVKLDTNGTNPKI 106
>gi|310642696|ref|YP_003947454.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus polymyxa
SC2]
gi|309247646|gb|ADO57213.1| Pyruvate formate-lyase 1-activating enzyme [Paenibacillus polymyxa
SC2]
Length = 252
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 22/146 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C +G
Sbjct: 10 ETFGTVDGPGIR------FVLFMQGC-----------LLKCQYCHNPDTW-ALNEGNPMT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIE 123
++++ IE G ++GGEP LQ + + +++NG +
Sbjct: 52 LEEVLAEIEPYLAYYRSSGGGLTVSGGEPTLQAHFVAELFKEVKRRWNLHTTLDSNGFND 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQEL 149
+ D + V+ D+K +
Sbjct: 112 AGRIHDLLDVTDLVLLDIKHIDNDKH 137
>gi|288905974|ref|YP_003431196.1| pyruvate formate-lyase activating enzyme [Streptococcus
gallolyticus UCN34]
gi|325978940|ref|YP_004288656.1| pyruvate formate lyase activating enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|288732700|emb|CBI14272.1| pyruvate formate-lyase activating enzyme [Streptococcus
gallolyticus UCN34]
gi|325178868|emb|CBZ48912.1| pyruvate formate lyase activating enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 262
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 20/126 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYN 66
E F ++ G G R +F GC +C++C T
Sbjct: 17 ESFGSVDGPGI---RFVIFM--QGC-----------KMRCQYCHNPDTWAMETNQSQERT 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD + K G ++GGE +LQ++ L + G ++T G
Sbjct: 61 VDDVLAEALRYKHFWGKNG-GITVSGGEAMLQIEFVTALFTKAKELGIHCTLDTCGFAFR 119
Query: 125 PQGIDW 130
Sbjct: 120 DTPEYH 125
>gi|241889395|ref|ZP_04776696.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
ATCC 10379]
gi|241863938|gb|EER68319.1| pyruvate formate-lyase 1-activating enzyme [Gemella haemolysans
ATCC 10379]
Length = 265
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 63/197 (31%), Gaps = 30/197 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F + G G R VF F GC +C++C +Q
Sbjct: 24 VESFGNVDGPGI---RYVVF--FQGC-----------MLRCKYCHNPDTWKMQNPDAKVM 67
Query: 66 NVDQLADLIEEQWITGEKEG-RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN-GT 121
VDQL I + E ++GGE LLQ+D + L + L + V+T G
Sbjct: 68 TVDQLTKEIVKYRDFFEASDGGGVTVSGGESLLQIDFILALFRKLKELDINTCVDTCGGF 127
Query: 122 IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL 181
++ + + DL + + + N F F
Sbjct: 128 YVNAPSMNEKVLELISLTDLFLVDIKHIDDEHHMRLTKRTNKNIIQFTNF--------LS 179
Query: 182 EENTNLAISYCFQNPKW 198
E + I + P+W
Sbjct: 180 EHGAKMWIRHVLV-PQW 195
>gi|160915923|ref|ZP_02078131.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
gi|158432399|gb|EDP10688.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
Length = 249
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 21/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F +GC +C++C
Sbjct: 11 ESFGSVDGPGV---RFVIF--LNGC-----------QMRCKYCHNVDTWQMQE--ANMTS 52
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
D+L K+G ++GGEPLLQ+D + L + +G ++T+G
Sbjct: 53 DELLKKALRYRSY-WKQGGGITVSGGEPLLQIDFVLELFEKAKAKGVHTVLDTSGN 107
>gi|225163391|ref|ZP_03725709.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
bacterium TAV2]
gi|224801979|gb|EEG20257.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
bacterium TAV2]
Length = 386
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 27/128 (21%)
Query: 1 MKL---YSIKEIFLTLQGEGGHAG---RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
M I I TL G H G R+ VF GC+ +C +C
Sbjct: 1 MMTESQLRIHSI-ETL---GTHDGPGLRMIVF--TQGCH-----------MRCVYCHNPD 43
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
+ G ++D++ Q G ++GGEP L +PL Q L+ G
Sbjct: 44 T-LDLAAGRLVSLDEILQRAIRQKPYYGTRG-GVTISGGEPTLHRKTLLPLFQQLHANGI 101
Query: 113 EIAVETNG 120
++TNG
Sbjct: 102 HTCLDTNG 109
>gi|312132964|ref|YP_004000303.1| pfla [Bifidobacterium longum subsp. longum BBMN68]
gi|311773946|gb|ADQ03434.1| PflA [Bifidobacterium longum subsp. longum BBMN68]
Length = 293
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
++ + +GGE ++Q + A + G ++T+G
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGF 158
>gi|306831993|ref|ZP_07465148.1| pyruvate formate-lyase activating enzyme [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304425919|gb|EFM29036.1| pyruvate formate-lyase activating enzyme [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 262
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 20/126 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYN 66
E F ++ G G R +F GC +C++C T
Sbjct: 17 ESFGSVDGPGI---RFVIFM--QGC-----------KMRCQYCHNPDTWAMETNQSQERT 60
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
VD + K G ++GGE +LQ++ L + G ++T G
Sbjct: 61 VDDVLAEALRYKHFWGKNG-GITVSGGEAMLQIEFVTALFTKAKELGIHCTLDTCGFAFR 119
Query: 125 PQGIDW 130
Sbjct: 120 DTPEYH 125
>gi|296453934|ref|YP_003661077.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. longum JDM301]
gi|296183365|gb|ADH00247.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. longum JDM301]
Length = 293
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + +GGE ++Q + A + G ++T+G + +
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTSYTDE 166
Query: 130 WI 131
+
Sbjct: 167 ML 168
>gi|209519755|ref|ZP_03268542.1| pyruvate formate-lyase activating enzyme [Burkholderia sp. H160]
gi|209499828|gb|EDZ99896.1| pyruvate formate-lyase activating enzyme [Burkholderia sp. H160]
Length = 284
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 21/112 (18%)
Query: 12 TLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQL 70
T+ G G F +GC +C+FC + G V +
Sbjct: 56 TVDGPGIR------FVAFLTGC-----------WLRCQFCHNPDTWHKH-NGHPVTVARA 97
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
I + + L+GGEP++Q + + + + + G ++T+G
Sbjct: 98 MREIGKYAQVLKISRGGLTLSGGEPMVQREFTMEIFRRCKQLGLHTCIDTSG 149
>gi|308069631|ref|YP_003871236.1| Pyruvate formate-lyase activating enzyme (PFL-activating enzyme)
[Paenibacillus polymyxa E681]
gi|305858910|gb|ADM70698.1| Pyruvate formate-lyase activating enzyme (PFL-activating enzyme)
[Paenibacillus polymyxa E681]
Length = 252
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 22/146 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C +G
Sbjct: 10 ETFGTVDGPGIR------FVLFMQGC-----------LLKCQYCHNPDTW-ALNEGNPMT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIE 123
++++ IE G ++GGEP LQ + + +++NG +
Sbjct: 52 LEEVLAEIEPYLAYYRSSGGGLTVSGGEPTLQAHFVAELFKEVKRRWNLHTTLDSNGFND 111
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQEL 149
+ + + V+ D+K +
Sbjct: 112 AGRIHELLDVTDLVLLDIKHIDNDKH 137
>gi|23465523|ref|NP_696126.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
NCC2705]
gi|23326183|gb|AAN24762.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
NCC2705]
Length = 293
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
++ + +GGE ++Q + A + G ++T+G
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGF 158
>gi|311064602|ref|YP_003971327.1| pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum
PRL2010]
gi|310866921|gb|ADP36290.1| pflA Pyruvate formate-lyase activating enzyme [Bifidobacterium
bifidum PRL2010]
Length = 293
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 27/190 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGQPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + +GGE ++Q + A + G ++T+G + +
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDE 166
Query: 130 WIC------VSPKAGCDL-KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
I + K+G + K L + RF L P LE
Sbjct: 167 MIDDIDLCLLDVKSGDEETYHKVTGGLLQPTIDFGRRLAKAGKKIWVRFVLVPG-LTDLE 225
Query: 183 ENTNLAISYC 192
EN C
Sbjct: 226 ENIENVARIC 235
>gi|189347395|ref|YP_001943924.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
gi|189341542|gb|ACD90945.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
Length = 364
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 23/136 (16%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL C + D + G +G + + +I E G R L
Sbjct: 22 GCNLKC--------RHC-WIDPKYQG-EGEQHPSLDPSLFRKIIREAIPLGLTSVR---L 68
Query: 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP---------QGIDWICVSPKAGCD 140
TGGEPLL L+ + + G +++VETNG + P ++ VS
Sbjct: 69 TGGEPLLHPAIGELLDCIGENGLQLSVETNGLLCSPQTAQDLRRSCETVFVSVSLDGVDA 128
Query: 141 LKIKGGQELKLVFPQV 156
+ +K F +
Sbjct: 129 ATHDWMRRVKGAFDKA 144
>gi|218283500|ref|ZP_03489490.1| hypothetical protein EUBIFOR_02080 [Eubacterium biforme DSM 3989]
gi|218215768|gb|EEC89306.1| hypothetical protein EUBIFOR_02080 [Eubacterium biforme DSM 3989]
Length = 294
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 70/240 (29%), Gaps = 55/240 (22%)
Query: 3 LYSIK--EIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSA------------ 45
+ + E F T G G VF GC L W +
Sbjct: 1 MIRVSNIEKFATHDGPGIRT---TVF--LKGCPLHCPWCANPETWKMEPTLLHDERKCVQ 55
Query: 46 ----------------------QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
+C +C D G +D++ + +
Sbjct: 56 CKTCMYMCAQEAISFPFQWDIDKCIYCKKCEDACLQDAISFVGKDIEIDEVIKEVLKDKD 115
Query: 80 TGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
++ ++GGEP +Q D + L++ + G +AVET G + +
Sbjct: 116 YFDQSNGGVTISGGEPFMQFDAFLELVKQCKENGLHVAVETTGNYSLDKLEQALPYIDLF 175
Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFER-----FSLQPMDGPFLEENTNLAISYC 192
DLK ++LK V N + + P+ F ++ I +C
Sbjct: 176 LMDLKHLDAKKLKDVTGANLDLILNNFRYLAKYCPNKVIVRMPVIPRFNDDICEEVIKFC 235
>gi|189439555|ref|YP_001954636.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
DJO10A]
gi|227546009|ref|ZP_03976058.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239621935|ref|ZP_04664966.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|317482295|ref|ZP_07941316.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium sp.
12_1_47BFAA]
gi|322688884|ref|YP_004208618.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. infantis 157F]
gi|322690859|ref|YP_004220429.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. longum JCM 1217]
gi|189427990|gb|ACD98138.1| Pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
DJO10A]
gi|227213643|gb|EEI81492.1| pyruvate-formate lyase-activating enzyme [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239515126|gb|EEQ54993.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|316916311|gb|EFV37712.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium sp.
12_1_47BFAA]
gi|320455715|dbj|BAJ66337.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. longum JCM 1217]
gi|320460220|dbj|BAJ70840.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. infantis 157F]
Length = 293
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
++ + +GGE ++Q + A + G ++T+G
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGF 158
>gi|283796877|ref|ZP_06346030.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium sp. M62/1]
gi|291075285|gb|EFE12649.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium sp. M62/1]
Length = 231
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C FC + + ++ + + ++++ E
Sbjct: 20 STIF--LGGCNF-----------RCPFCHNGDLVNGPWEDP-FDPEDVLAFLKKRSGLLE 65
Query: 83 KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIE 123
+TGGEP LQ D+ I ++ G + ++TNG
Sbjct: 66 G----VCITGGEPTLQPDLEKLIHSIRSLGLSVKLDTNGYRP 103
>gi|46190413|ref|ZP_00206457.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bifidobacterium
longum DJO10A]
gi|291517070|emb|CBK70686.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium longum
subsp. longum F8]
Length = 280
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 51 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 93
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
++ + +GGE ++Q + A + G ++T+G
Sbjct: 94 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGF 145
>gi|218439782|ref|YP_002378111.1| pyruvate formate-lyase activating enzyme [Cyanothece sp. PCC 7424]
gi|218172510|gb|ACK71243.1| pyruvate formate-lyase activating enzyme [Cyanothece sp. PCC 7424]
Length = 255
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 19/117 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC L +C +C +G +
Sbjct: 22 VETCGTVDGPGI---RYVIF--TQGCPL-----------RCLYCHNPDCRH-LNEGKKIK 64
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
VD+L I++ + G +TGGEPL+Q + + + + G ++T+G
Sbjct: 65 VDELILEIKKYRSYFQASGGGVTVTGGEPLMQPEFVEEICRRCQELGIHTVLDTSGY 121
>gi|15679581|ref|NP_276698.1| pyruvate formate-lyase activating enzyme [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622709|gb|AAB86059.1| pyruvate formate-lyase activating enzyme [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 233
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G+ ++ +GCN +C +C + G +++ + D +E
Sbjct: 18 GKTSLVIFTAGCNF-----------RCPYCHNPELI---DGGDEVDLETVLDDVERYSEF 63
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEPPQGIDWICVS 134
E V++GGEPLLQVD + R G ++TNG+ +
Sbjct: 64 VEA----LVVSGGEPLLQVDALETVLEHARSLGLATKLDTNGSYPEALEGYCPTLD 115
>gi|308234338|ref|ZP_07665075.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM
15829]
Length = 269
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ G G VFC GC +C++C T G R +V +L
Sbjct: 3 TVDGPGTRM---VVFC--QGCPF-----------RCKYCHNPETWAFDT-GQRMSVAELM 45
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR---GFEIAVETNGTIEPPQ 126
+ + +GGEPL Q + L +A ++ ++++G P+
Sbjct: 46 KVYDRNRPF--YRRGGITASGGEPLAQPNFIAALFKAAHEDPKGRIHTCLDSSGATFNPR 103
Query: 127 GIDWIC 132
+++
Sbjct: 104 HPEYVS 109
>gi|291456554|ref|ZP_06595944.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium breve
DSM 20213]
gi|291381831|gb|EFE89349.1| pyruvate formate-lyase 1-activating enzyme [Bifidobacterium breve
DSM 20213]
Length = 280
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 51 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 93
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
++ + +GGE ++Q + A + G ++T+G
Sbjct: 94 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGF 145
>gi|170759160|ref|YP_001788923.1| radical SAM domain-containing protein [Clostridium botulinum A3
str. Loch Maree]
gi|169406149|gb|ACA54560.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 278
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 42/191 (21%)
Query: 3 LYS--IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-QCRFCDT----- 52
+ + +I F ++ G G A+F F GCN + + C+ C T
Sbjct: 1 MLKGLVNKIIPFSSVDGPGNRT---AIF--FQGCNFDCKYCHNPETINTCKACGTCAFVC 55
Query: 53 ---------DFVGIQGTK---------------GGRYNVDQLADLIEEQWITGEKEGRYC 88
D V K G R + ++I+E T
Sbjct: 56 PYNAVEFLGDSVKWDENKCRNCGICLEKCKNNCGPRNKYMSVGEIIKEILKTKPF-ISGI 114
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
++GGE LQ D + L + + G I V+TNG+++ + + A D+K
Sbjct: 115 TVSGGECTLQKDFLIDLFEKVKLLGLTIFVDTNGSLDFSKNPKLTELMDMAMVDVKSFDN 174
Query: 147 QELKLVFPQVN 157
+E K++ + N
Sbjct: 175 EEHKMLTKRNN 185
>gi|329768807|ref|ZP_08260238.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325]
gi|328839580|gb|EGF89155.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325]
Length = 263
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 60/196 (30%), Gaps = 28/196 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F + G G R VF F GC +C++C +
Sbjct: 22 VESFGNVDGPGI---RYVVF--FQGC-----------MLRCKYCHNPDTWKMHNPDAKVV 65
Query: 66 NVDQLADLIEEQWITGEKE-GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
V QL + I + E G ++GGE LLQ+D + L + L V+T G
Sbjct: 66 TVSQLTNEIVKYRNFFEASEGGGVTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG-- 123
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
G + I + ++ + + LQ +
Sbjct: 124 ----GFYVNTPTMNEKILELISLTDLFLMDLKHIDDEQHIKLTKRTNKNILQ-FARFLSD 178
Query: 183 ENTNLAISYCFQNPKW 198
+ I + PKW
Sbjct: 179 NGAKMWIRHVLV-PKW 193
>gi|169835621|ref|ZP_02868809.1| pyruvate formate-lyase activating enzyme [candidate division TM7
single-cell isolate TM7a]
Length = 223
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
A+F SGCN +C +C + + V++ ++ + +
Sbjct: 20 AALF--LSGCN-----------MRCGYCHNPELVLPERLAPSIPVEEAMIFLKSRIGRLD 66
Query: 83 KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPP 125
V++GGEP + D+P+ + + GF++ ++TNGT
Sbjct: 67 G----VVISGGEPTVNEDLPVLCRMIKSLGFDVKLDTNGTHPDI 106
>gi|38232995|ref|NP_938762.1| putative oxidoreductase [Corynebacterium diphtheriae NCTC 13129]
gi|38199253|emb|CAE48884.1| Putative oxidoreductase [Corynebacterium diphtheriae]
Length = 291
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 31/197 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F SGC L +C +C + +G V+ +
Sbjct: 62 VDGPGTRM---TMFM--SGCPL-----------RCLYCHNPDT-MGMKEGTVERVESIVK 104
Query: 73 LIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGT------IEP 124
I+ + G ++GGEPL + +++ ++ G ++T+G E
Sbjct: 105 KIKRYRNVFKASGGGLTISGGEPLFQIAFTRRVLKEVHDAGIHTTIDTSGYLGARLTDED 164
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV--SPENYIGFDFERFSLQPMDGPFLE 182
+ ID + + K+G + + + P ++ + RF L P
Sbjct: 165 LENIDLVLLDVKSGDEETYHRVSGGRELQPTIDFGNRLNAIGKPVWIRFVLVPG-VSDAP 223
Query: 183 ENTNLAISYCFQNPKWR 199
EN N +W+
Sbjct: 224 ENINNVADIVA---QWK 237
>gi|299145466|ref|ZP_07038534.1| putative pyruvate formate-lyase-activating enzyme [Bacteroides sp.
3_1_23]
gi|298515957|gb|EFI39838.1| putative pyruvate formate-lyase-activating enzyme [Bacteroides sp.
3_1_23]
Length = 205
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 17/137 (12%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ GEG F GC L +C++C RY+ +QL
Sbjct: 15 TIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + + GGEPLLQ + + + L + I VET+ + +
Sbjct: 59 EEVRKDELYFLASCGGVTFGGGEPLLQNEFIRQFRQLCGPEWRITVETSLNVPLQNVEEL 118
Query: 131 ICVSPKAGCDLKIKGGQ 147
I + D+K
Sbjct: 119 ISIVDNYIVDIKDMNND 135
>gi|254361126|ref|ZP_04977270.1| hypothetical protein
gi|261491929|ref|ZP_05988506.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496267|ref|ZP_05992672.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|153092617|gb|EDN73666.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia
haemolytica PHL213]
gi|261308098|gb|EEY09396.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312396|gb|EEY13522.1| purine nucleoside phosphorylase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 262
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G ++F GC L C +C + + + ++
Sbjct: 17 FSNVEGQGNRT---SIF--LQGCKLN-----------CLYCHNPETIPRYSKEAKQVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L D + E R ++GGEP + VPL +AL ++G ++++G +
Sbjct: 61 YLYDQVMEAVPF----IRGVTISGGEPTIHHKKLVPLFEALREQGLTCYLDSSGFFDFEA 116
Query: 127 GIDWICVSPKAGCDLK 142
I V+ K DLK
Sbjct: 117 TEPLINVTDKFLFDLK 132
>gi|329929622|ref|ZP_08283321.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. HGF5]
gi|328935999|gb|EGG32453.1| pyruvate formate-lyase 1-activating enzyme [Paenibacillus sp. HGF5]
Length = 241
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C
Sbjct: 10 ETFGTVDGPGIR------FVLFMQGC-----------LLKCQYCHNPDTWGLHEGHE-MT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR-GFEIAVETNGTIE 123
VD + IE G ++GGEP LQ L + + +R +++NG E
Sbjct: 52 VDDVLREIEPYLSYYRSSGGGLTVSGGEPTLQYPFVTELFKEVKRRWNLHTTLDSNGYNE 111
Query: 124 P 124
P
Sbjct: 112 P 112
>gi|313898310|ref|ZP_07831847.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium sp. HGF2]
gi|312956692|gb|EFR38323.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium sp. HGF2]
Length = 378
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C FC + + + +E++ +
Sbjct: 168 STIF--TGGCNF-----------RCPFCQNSDLVFLPENMPELQEEDVLSFLEKRKGILD 214
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
++GGEPLL ++ ++ + G+ + ++TNG+
Sbjct: 215 G----VCISGGEPLLNPELAGFLKKIKDMGYAVKLDTNGSSPDQLKH 257
>gi|323341138|ref|ZP_08081386.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis
ATCC 25644]
gi|323091559|gb|EFZ34183.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis
ATCC 25644]
Length = 274
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 38/207 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GCN+ C+FC + G
Sbjct: 26 ETFGAVDGPGIR------FVVFMQGCNMR-----------CKFCHNPDTW-KKNVGTTMT 67
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
D++ ++G L+GGE LLQ + + L + G ++T G
Sbjct: 68 ADEVLKKALPYREFWGEQG-GITLSGGEILLQPEFALDLFTKCKELGISTCLDTCG-QPF 125
Query: 125 PQGIDW-------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------R 170
+ W + V+ D+K + KL+ N + + + E R
Sbjct: 126 TRRKPWFDTFNKLLDVTDILLVDIKHIDSDKHKLLTGFPNENILDLCEYLSEIGKPVWIR 185
Query: 171 FSLQPMDGPFLEENTNLAISYCFQNPK 197
L P +E+ +Y + +
Sbjct: 186 HVLIP-TQTDFDEDLEKLGNYIKTHLR 211
>gi|281355888|ref|ZP_06242381.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Victivallis vadensis ATCC BAA-548]
gi|281317257|gb|EFB01278.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Victivallis vadensis ATCC BAA-548]
Length = 238
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCNL +C FC + + + +E + E
Sbjct: 22 VF--TGGCNL-----------RCPFCHNPCLVFDPASQPKVTEKEFFGFLERRKGLLEG- 67
Query: 85 GRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
V++GGEP+LQ D+ P ++ + K GF V++NGT
Sbjct: 68 ---VVISGGEPMLQPDLVPFVERIRKSGFLAKVDSNGTFP 104
>gi|294786965|ref|ZP_06752219.1| pyruvate formate-lyase 1-activating enzyme [Parascardovia
denticolens F0305]
gi|294485798|gb|EFG33432.1| pyruvate formate-lyase 1-activating enzyme [Parascardovia
denticolens F0305]
Length = 299
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y ++ +
Sbjct: 70 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGRPVY-LEAMI 112
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
D + + +GGE + Q + +A + G ++T+G
Sbjct: 113 DKVARYKDLFQLTHGGITFSGGESMQQPKFVTRVFRAAKEMGIHTCLDTSGF 164
>gi|257064523|ref|YP_003144195.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Slackia heliotrinireducens DSM 20476]
gi|256792176|gb|ACV22846.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Slackia heliotrinireducens DSM 20476]
Length = 231
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GC+ +C FC F + G ++ ++++ +
Sbjct: 21 TVF--LGGCDF-----------RCPFCHN-FELVVGPLPVAMEDEEFFAFLDKRHGLLDG 66
Query: 84 EGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+TGGEP L+ I+ + GF + ++TNG
Sbjct: 67 ----VAITGGEPCLRRDLPEFIKKIRDAGFPVKLDTNGYHPEMLKH 108
>gi|225352289|ref|ZP_03743312.1| hypothetical protein BIFPSEUDO_03905 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157536|gb|EEG70875.1| hypothetical protein BIFPSEUDO_03905 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 280
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y + +
Sbjct: 51 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-YEAMV 93
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE + +GGE ++Q + +A + G ++T+G
Sbjct: 94 KKIERYVDLFKATHGGITFSGGESMMQPAFVSRVFRAAKEMGVHTCLDTSGF 145
>gi|310287704|ref|YP_003938962.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum
S17]
gi|309251640|gb|ADO53388.1| Pyruvate formate-lyase activating enzyme [Bifidobacterium bifidum
S17]
Length = 293
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 27/190 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGQPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + +GGE ++Q + A + G ++T+G + +
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDE 166
Query: 130 WIC------VSPKAGCDL-KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
I + K+G + K L + RF L P E
Sbjct: 167 MIDDIDLCLLDVKSGDEETYHKVTGGLLQPTIDFGRRLAKAGKKIWVRFVLVPG-LTDSE 225
Query: 183 ENTNLAISYC 192
EN C
Sbjct: 226 ENIENVARIC 235
>gi|260438619|ref|ZP_05792435.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio crossotus
DSM 2876]
gi|292809213|gb|EFF68418.1| pyruvate formate-lyase 1-activating enzyme [Butyrivibrio crossotus
DSM 2876]
Length = 256
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 22/117 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F + G G R VF GC +C+FC G +
Sbjct: 9 ETFGLVDGPGV---RYIVF--LQGC-----------RMRCKFCHNPETWSM-DGGEMWTP 51
Query: 68 DQLADLIEEQWITGEKEGR---YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ L + G+ ++GGEPLLQ++ + +G ++T+
Sbjct: 52 EDLFKRAYRYKPYWMRNGKLNGGITVSGGEPLLQIEFVTEFFKLAKAKGVHTTLDTS 108
>gi|224283335|ref|ZP_03646657.1| Pyruvate-formate lyase-activating enzyme [Bifidobacterium bifidum
NCIMB 41171]
gi|313140486|ref|ZP_07802679.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium bifidum
NCIMB 41171]
gi|313132996|gb|EFR50613.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium bifidum
NCIMB 41171]
Length = 293
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 27/190 (14%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGQPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + +GGE ++Q + A + G ++T+G + +
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDE 166
Query: 130 WIC------VSPKAGCDL-KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
I + K+G + K L + RF L P E
Sbjct: 167 MIDDIDLCLLDVKSGDEETYHKVTGGLLQPTIDFGRRLAKAGKKIWVRFVLVPG-LTDSE 225
Query: 183 ENTNLAISYC 192
EN C
Sbjct: 226 ENIENVARIC 235
>gi|315226604|ref|ZP_07868392.1| pyruvate formate-lyase activating enzyme [Parascardovia denticolens
DSM 10105]
gi|315120736|gb|EFT83868.1| pyruvate formate-lyase activating enzyme [Parascardovia denticolens
DSM 10105]
Length = 304
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y ++ +
Sbjct: 75 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGRPVY-LEAMI 117
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
D + + +GGE + Q + +A + G ++T+G
Sbjct: 118 DKVARYKDLFQLTHGGITFSGGESMQQPKFVTRVFRAAKEMGIHTCLDTSGF 169
>gi|269469075|gb|EEZ80630.1| pyruvate-formate lyase-activating enzyme [uncultured SUP05 cluster
bacterium]
Length = 207
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 14/145 (9%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL +CR+C I +K +++ +Q+ + I+ + + V +G
Sbjct: 21 NLSCVVFTQGCPWRCRYCHN-HDLIPTSKQTQFDWEQIVEFIKTRVGLLDA----VVFSG 75
Query: 93 GEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKA---GCDLKI 143
GEP LQ + I+ + GF++ + T G +DW+ K +
Sbjct: 76 GEPCLQKGLLGAIKRVKALGFKVGLHTGGAYPNRLKQCLDYVDWVGFDVKHLPLNYEEVT 135
Query: 144 KGGQELKLVFPQVNVSPENYIGFDF 168
+ + + +N+ + + +
Sbjct: 136 QVPKSADKAWMSLNILLASKVDYQL 160
>gi|239623137|ref|ZP_04666168.1| radical SAM [Clostridiales bacterium 1_7_47_FAA]
gi|239522504|gb|EEQ62370.1| radical SAM [Clostridiales bacterium 1_7_47FAA]
Length = 276
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 50/178 (28%), Gaps = 46/178 (25%)
Query: 2 KLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-------------- 45
+ +I F + G G AVF GCN + +
Sbjct: 1 MTAPVNKIIPFSCVDGPGNRT---AVF--LQGCNQNCLYCHNPETINLCRNCGACVKTCP 55
Query: 46 ----------------QCRFCDTDF---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
C CDT K +QL D ++ +
Sbjct: 56 AGALSMADGLVSYDYKACCNCDTCLKTCAYDASPKIRNMTPEQLYDEVKAYFPF----IS 111
Query: 87 YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
+GGE L +D + G ++TNG + D + V+ K DLK
Sbjct: 112 GITTSGGECSLYLDFLKEFYTLVKAAGRTTYMDTNGQVPLWDRTDLLEVTDKTMIDLK 169
>gi|205373684|ref|ZP_03226487.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
activating enzyme) [Bacillus coahuilensis m4-4]
Length = 243
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 33/206 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F T+ G G R +F GC +C++C G G +V
Sbjct: 11 ESFGTVDGPGI---RYVIF--TQGC-----------LLRCQYCHNPDTWEIG-AGNSMSV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
++L I + G ++GGEP L + L + K A++T+G
Sbjct: 54 EELMRDITSYLPYLQSSGGGVTVSGGEPLLHLDFLLELFKECKKFDLHTAIDTSGGCFQT 113
Query: 126 QGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RFS 172
+ + DLK Q K + + N + + R
Sbjct: 114 SEAFMNKLNEVLKWTDLVLLDLKHMDSQAHKHLTGKRNEHIHQFAKYLEASSIPVWIRHV 173
Query: 173 LQPMDGPFLEENTNLAISYCFQNPKW 198
L P E T L + Q
Sbjct: 174 LVPGKTDSAENLTALG-EFIKQLSNV 198
>gi|149021926|ref|ZP_01835913.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP23-BS72]
gi|168494783|ref|ZP_02718926.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC3059-06]
gi|221232701|ref|YP_002511855.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
ATCC 700669]
gi|147929964|gb|EDK80952.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
SP23-BS72]
gi|183575346|gb|EDT95874.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
pneumoniae CDC3059-06]
gi|220675163|emb|CAR69747.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
ATCC 700669]
Length = 264
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 38/170 (22%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC+ +C++C ++ K
Sbjct: 19 ESFGSVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMESNKSRER 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD + +G ++GGE LLQ+D + L ++G ++T
Sbjct: 62 TVDDVLTEALRYRGFWGNKG-GITVSGGEALLQIDFLIALFTKAKEQGIHCTLDTCAL-- 118
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
K + ++ + ++ + + E+ +
Sbjct: 119 --------------PFRNKPRYLEKFDKLMAVTDLVLLDIKEINEEQHKI 154
>gi|284162386|ref|YP_003401009.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Archaeoglobus profundus DSM 5631]
gi|284012383|gb|ADB58336.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Archaeoglobus profundus DSM 5631]
Length = 234
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 24/104 (23%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF F GC +C +C + G +++A I E
Sbjct: 20 AVVF--FVGCPF-----------RCPYCQNYRLF---EGGVEVTPEEIAKKIRE-----N 58
Query: 83 KEGRYCVLTGGEPLLQVDVPLIQAL---NKRGFEIAVETNGTIE 123
LTGGEPL+Q L + + + G + ++TNG
Sbjct: 59 YLIEGVCLTGGEPLVQNLDELTKLIELLKEYGLAVKLDTNGYYP 102
>gi|319943185|ref|ZP_08017468.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC
51599]
gi|319743727|gb|EFV96131.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC
51599]
Length = 273
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 19/123 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYN 66
E T+ G G GC +C +C Q K
Sbjct: 36 ESCGTVDGPGLR-----YVLFLQGC-----------LMRCLYCHNRDTWDLQSDKAREMT 79
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V ++ + + G TGGEPLLQ + A ++ G ++TNG
Sbjct: 80 VPEVMKQVMSYRHYLKATGGGVTATGGEPLLQYEFVRDWFVACHQNGIHTCLDTNGYALH 139
Query: 125 PQG 127
Sbjct: 140 YDE 142
>gi|227893095|ref|ZP_04010900.1| formate acetyltransferase activating enzyme [Lactobacillus
ultunensis DSM 16047]
gi|227865073|gb|EEJ72494.1| formate acetyltransferase activating enzyme [Lactobacillus
ultunensis DSM 16047]
Length = 275
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 39/183 (21%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF F GC L +C++C + +
Sbjct: 26 DGPGIRT---VVF--FKGCPL-----------RCKWCSNPESQLGKPEPMFDSSKNKMIT 69
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ D + + + G +GGE L Q + L + L G +A ET
Sbjct: 70 CGKFMTVDEVMDEVMKDKAFYDASGGGVTFSGGEVLFQAKFAIELAKRLKAEGVHLACET 129
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL--------VFPQVNVSPENYIGFDFER 170
G ++ ++++ D K K + ++++ + + ++
Sbjct: 130 TGYVKSSVFMEFMKYMDFMYYDCKQWDPMLHKKGTGKTNEIILKNLDLALKYQTPENHKK 189
Query: 171 FSL 173
+
Sbjct: 190 LCI 192
>gi|290473883|ref|YP_003466757.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
SS-2004]
gi|289173190|emb|CBJ79963.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
SS-2004]
Length = 246
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 22/167 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VF F GC +C +C G V
Sbjct: 11 ESCGTVDGPGI---RFIVF--FQGC-----------LMRCLYCHNRDTW-NTHGGTTVTV 53
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
++L G +GGE +LQ + +A + ++TNG +
Sbjct: 54 EELIKEATTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACHAENIHTCLDTNGFVRR- 112
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
D I DL + ++L Q + N+ +F +
Sbjct: 113 --YDLIIDELLDDTDLVMLDLKQLDDEIHQKLIGVSNHRTLEFAHYL 157
>gi|262038830|ref|ZP_06012179.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
F0264]
gi|261747163|gb|EEY34653.1| pyruvate formate-lyase-activating enzyme [Leptotrichia goodfellowii
F0264]
Length = 243
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 21/166 (12%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
+ +I F + G G R+++F F GCN + T V +
Sbjct: 5 VNKIIPFSNVDGPGN---RLSIF--FQGCNFDCLYCHNPE--------TIEVFGENKVPE 51
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRG--FEIAVETN 119
+V ++ D+++E ++GGE LQ L +A+ KR V++N
Sbjct: 52 EISVMEIDDILKEIEEVAPF-ISGITVSGGECSLQWKFLTELFKAVKKRWERMTCFVDSN 110
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
G+I +S L IK E + V VS EN I
Sbjct: 111 GSIPLWTEDKKEFLSVTDKIMLDIKAFDEKDHILM-VGVSNENVIK 155
>gi|260170418|ref|ZP_05756830.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
gi|315918774|ref|ZP_07915014.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
gi|313692649|gb|EFS29484.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D2]
Length = 205
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 17/137 (12%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ GEG F GC L +C++C RY+ +QL
Sbjct: 15 TIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + + GGEPLLQ + + + L + I VET+ + +
Sbjct: 59 EEVRKDELYFLASCGGVTFGGGEPLLQNEFIRQFRQLCGPEWRITVETSLNVPLQNVEEL 118
Query: 131 ICVSPKAGCDLKIKGGQ 147
I + D+K
Sbjct: 119 ISIVDNYIVDIKDMNND 135
>gi|296129568|ref|YP_003636818.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena
DSM 20109]
gi|296021383|gb|ADG74619.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena
DSM 20109]
Length = 293
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ +F SGC L +C +C +Q +G D+L
Sbjct: 65 VDGPGT---RLTIF--LSGCPL-----------RCLYCHNPDT-MQMRRGTDVTADELLA 107
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
I G ++GGEPL+Q L++ +A++T+G
Sbjct: 108 RIARYRGVFRATGGGVTISGGEPLMQPAFVRRLVRGAAAMDVPVAIDTSGY 158
>gi|258514870|ref|YP_003191092.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257778575|gb|ACV62469.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 307
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 44 SAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D 100
+ +C F CD FV + G ++ QL +++ + G E Y GGEP L
Sbjct: 11 TYRCTFECDHCFVWGSPWQSGTLSLKQLREILRQAEAVGSLEWIYFE--GGEPFLFYPVL 68
Query: 101 VPLIQALNKRGFEIAVETNGTI 122
+ ++ + GF + + TNG
Sbjct: 69 LEAVREASAAGFRVGIVTNGYW 90
>gi|309775961|ref|ZP_07670953.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
bacterium 3_1_53]
gi|308916243|gb|EFP61991.1| pyruvate-formate lyase-activating enzyme [Erysipelotrichaceae
bacterium 3_1_53]
Length = 378
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C FC + + + +E++ +
Sbjct: 168 STIF--TGGCNF-----------RCPFCQNSDLVFLPENMPELQEEDVLRFLEKRKGILD 214
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
++GGEPLL ++ ++ + G+ + ++TNG+
Sbjct: 215 G----VCISGGEPLLNPELAGFLRKIKALGYAVKLDTNGSSP 252
>gi|294102548|ref|YP_003554406.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aminobacterium colombiense DSM 12261]
gi|293617528|gb|ADE57682.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aminobacterium colombiense DSM 12261]
Length = 229
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 33/142 (23%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GCN +C +C + ++G + + + + +E + +
Sbjct: 20 AVVF--TKGCNF-----------RCPYCQNPEL-VEGGEINFLSEEGFFNFLERRIGLLD 65
Query: 83 KEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
V+TGGEP L +P I+ + GF + ++TNG+
Sbjct: 66 G----VVITGGEPTLQPDLLPFIEKVKNMGFLVKLDTNGSDPKGLQSFI----------- 110
Query: 142 KIKGGQELKLVFPQVNVSPENY 163
G + V V SPE Y
Sbjct: 111 ---GKDLVDYVAMDVKASPEEY 129
>gi|311896173|dbj|BAJ28581.1| putative pyruvate formate-lyase-activating enzyme [Kitasatospora
setae KM-6054]
Length = 256
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R VF +GC L + + + G R D++
Sbjct: 28 VDGPGT---RFVVF--LAGCPLNCLYCHNPDTMR------------MRNGTRTGADEVVA 70
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGT 121
+ G ++GGEPLLQ D + ++ G A++T+G
Sbjct: 71 EASKYTAFIHAAGGGATVSGGEPLLQPDFAGELFHRFKHELGLHTALDTSGF 122
>gi|261405912|ref|YP_003242153.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp.
Y412MC10]
gi|261282375|gb|ACX64346.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp.
Y412MC10]
Length = 241
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C
Sbjct: 10 ETFGTVDGPGIR------FVLFMQGC-----------LLKCQYCHNPDTWGLHEGHE-MT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR-GFEIAVETNGTIE 123
VD + IE G ++GGEP LQ L + + +R +++NG E
Sbjct: 52 VDDVLREIEPYLSYYRSSGGGLTVSGGEPTLQYPFVTELFKEVKRRWNLHTTLDSNGYNE 111
Query: 124 P 124
P
Sbjct: 112 P 112
>gi|294790937|ref|ZP_06756095.1| pyruvate formate-lyase 1-activating enzyme [Scardovia inopinata
F0304]
gi|294458834|gb|EFG27187.1| pyruvate formate-lyase 1-activating enzyme [Scardovia inopinata
F0304]
Length = 291
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 62 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGQPVY-LDAMV 104
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+E + G +GGE + Q + +A + G ++T+G
Sbjct: 105 AKVERYKDLFQLTGGGITFSGGESMQQPKFVTRVFRAAKEMGVHTCLDTSGF 156
>gi|291523778|emb|CBK89365.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale DSM
17629]
Length = 249
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---QGTKGG 63
E F + G G R VF GCN +C++C +
Sbjct: 11 VESFGSADGPGV---RYIVF--LKGCN-----------MRCKYCHNPDTWAKCGENDGAK 54
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
++ K+ ++GGE LLQ+D L + ++ ++T+G
Sbjct: 55 LMTPQEVLKTAMRYK-AYWKQTGGITVSGGEALLQIDFVTELFKLAKEKCVNTCLDTSGN 113
>gi|299142548|ref|ZP_07035679.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735]
gi|298575983|gb|EFI47858.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735]
Length = 242
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 28/168 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F GC +C FC + K
Sbjct: 8 ESFGSVDGPGIR------FLIFLQGCP-----------MRCLFCHNPDTW-KQDKTRPMT 49
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT--- 121
D+L + E+ E ++GGE LLQ+D + L + + R ++T+
Sbjct: 50 ADELLNQAEKYRSY-WGEKGGITVSGGEALLQIDFLIELFEKAHARSINTCLDTSAQPFT 108
Query: 122 ---IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ + V+ D+K E + + N + + +
Sbjct: 109 RKGTWFAKFERLMKVTDTVLLDIKHIREDEHRKLTKFSNSNILDCARY 156
>gi|227873120|ref|ZP_03991412.1| possible [formate-C-acetyltransferase]-activating enzyme
[Oribacterium sinus F0268]
gi|227841014|gb|EEJ51352.1| possible [formate-C-acetyltransferase]-activating enzyme
[Oribacterium sinus F0268]
Length = 355
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 47/207 (22%)
Query: 5 SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS----AQC----RFCDTDF 54
+ +I F ++ G G A+F CNL + + C C T
Sbjct: 78 PVNKIIPFSSVDGPGNRT---AIF--LQACNLDCKYCHNPETRALCIHCGDCIPGCPTKA 132
Query: 55 VGIQ-------------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
+ + + R + ++ + R
Sbjct: 133 IYWEEGRVAFSPEKCIGCDQCIHACTHNASPRIRRMSAKEVFQEASKNLPF----IRGIT 188
Query: 90 LTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQG-IDWICVSPKAGCDLKIKGG 146
++GGE L L KRG +++NG + + D + D+K G
Sbjct: 189 VSGGECTLYPEFLRELGMLCKKRGIGFLLDSNGYYDFSKDEKDLLPYIDGVMLDIKAYNG 248
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSL 173
+E K V N + E L
Sbjct: 249 EEHKRVTGFSNEEILKNMRILAEYDKL 275
>gi|323487361|ref|ZP_08092660.1| hypothetical protein HMPREF9474_04411 [Clostridium symbiosum
WAL-14163]
gi|323399322|gb|EGA91721.1| hypothetical protein HMPREF9474_04411 [Clostridium symbiosum
WAL-14163]
Length = 230
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C FC + ++G G ++ +++ ++++ E
Sbjct: 20 ATIF--LGGCNF-----------RCPFCHNSDL-LEGMDG-LFSKEEVLTFLKKRAGILE 64
Query: 83 KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L P I+ + G + ++TNG
Sbjct: 65 G----VCITGGEPTLHRDLEPFIREIRSLGLLVKLDTNGYRP 102
>gi|212715676|ref|ZP_03323804.1| hypothetical protein BIFCAT_00576 [Bifidobacterium catenulatum DSM
16992]
gi|212661043|gb|EEB21618.1| hypothetical protein BIFCAT_00576 [Bifidobacterium catenulatum DSM
16992]
Length = 280
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y + +
Sbjct: 51 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-YEAMV 93
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
IE + +GGE ++Q + A + G ++T+G + D
Sbjct: 94 KKIERYADLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLGASYTDD 153
Query: 130 WI 131
+
Sbjct: 154 MV 155
>gi|94314056|ref|YP_587265.1| ribonucleoside triphosphate reductase-activating protein (NrdG-D
activase) [Cupriavidus metallidurans CH34]
gi|93357908|gb|ABF11996.1| ribonucleoside triphosphate reductase-activating protein (NrdG-D
activase) [Cupriavidus metallidurans CH34]
Length = 223
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 26/128 (20%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR+A VFC GC +C +C + + R + + +
Sbjct: 19 GRLAAVVFC--QGCP-----------WRCDYCHNPHLIPVASPSAR-----VWEDVLAFL 60
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWIC 132
V +GGEP LQ +P ++ + + GFE+A+ T G +DW+
Sbjct: 61 ARRRGLLDGVVFSGGEPTLQAALPAAMRDVRQLGFEVALHTAGMYPDRLEAALPWVDWVG 120
Query: 133 VSPKAGCD 140
KA
Sbjct: 121 FDIKAPAH 128
>gi|297527190|ref|YP_003669214.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
gi|297256106|gb|ADI32315.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
Length = 363
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 40/204 (19%)
Query: 23 VAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF +GCN + Q+ + +Q R+ G Y+ +++ L E
Sbjct: 86 ACVFSISTAGCNFYCKFCQNWVLSQSRY--------DKIFGEPYDPEEVVKLAIE----- 132
Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI------EPPQGIDWICV 133
+ T EP + + K G + TNG + E +D V
Sbjct: 133 -NGCQGISYTYNEPTIFYEFMYDTAKLAKKEGLFNTMVTNGYMTPEAIKELGPYMDAATV 191
Query: 134 SPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
K G + K G + + +F + + + + P G E+ LA
Sbjct: 192 DFKGGGNKEFYRKFMGVLDPEPIFDSILAMKKEGWWIEITNLVV-PKYGDKEEDIRKLAR 250
Query: 190 SYCFQ------------NPKWRLS 201
+P ++L
Sbjct: 251 WIVENLGDETPFHLLRFHPDYKLQ 274
>gi|315646290|ref|ZP_07899410.1| pyruvate formate-lyase activating enzyme [Paenibacillus vortex
V453]
gi|315278489|gb|EFU41805.1| pyruvate formate-lyase activating enzyme [Paenibacillus vortex
V453]
Length = 242
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 22/121 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C++C +G
Sbjct: 10 ETFGTVDGPGIR------FVLFMQGC-----------LLKCQYCHNPDTW-GLHEGQEMT 51
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR-GFEIAVETNGTIE 123
V+ + IE G ++GGEP LQ L + + +R +++NG E
Sbjct: 52 VEDVLAQIEPYLSYYRSSGGGLTVSGGEPTLQYPFVTELFKEVKRRWNLHTTLDSNGYNE 111
Query: 124 P 124
P
Sbjct: 112 P 112
>gi|213692582|ref|YP_002323168.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|213524043|gb|ACJ52790.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|320458734|dbj|BAJ69355.1| pyruvate formate-lyase activating enzyme [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 293
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y +D +
Sbjct: 64 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LDAMI 106
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
++ + +GGE ++Q + A + G ++T+G + +
Sbjct: 107 KKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAREMGVHTCLDTSGFLNTSYTDE 166
Query: 130 WI 131
+
Sbjct: 167 ML 168
>gi|206895496|ref|YP_002246380.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Coprothermobacter proteolyticus DSM 5265]
gi|206738113|gb|ACI17191.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Coprothermobacter proteolyticus DSM 5265]
Length = 230
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
F R GCN +C +C + + ++ ++ + +
Sbjct: 23 FTR--GCNF-----------RCPYCHNPELVDPQQYAEPWQEEEFWAFLQSRTQKLDA-- 67
Query: 86 RYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
V+TGGEP L + P ++ + K GF I ++TNG+
Sbjct: 68 --VVVTGGEPTLQEDLQPFLEKIRKMGFLIKLDTNGSNP 104
>gi|154150933|ref|YP_001404551.1| putative molybdenum cofactor biosynthesis protein A [Candidatus
Methanoregula boonei 6A8]
gi|153999485|gb|ABS55908.1| putative molybdenum cofactor biosynthesis protein A [Methanoregula
boonei 6A8]
Length = 296
Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 35/197 (17%)
Query: 21 GRVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
GR R S CNL C +C + + D++ ++
Sbjct: 12 GRPVTNLRISLTSRCNLS-----------CIYC---HAEGEKNPATEMSTDEIIAIMN-- 55
Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICV---- 133
+ + R TGGEPL++ D+ I G E +V TNG + D
Sbjct: 56 -VAAKFGIRSIKFTGGEPLIRPDILDIIRAVPVGIESSVTTNGILLADMAYDLKTAGLRR 114
Query: 134 ------SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
S +I G L V ++ + G + ++ + G E +
Sbjct: 115 VNVSLDSLNPETYKRITGCDCLNNVLAGIDAAL--RAGLTPVKLNMVILSGINDNEIDDF 172
Query: 188 AISYCFQNPKWRLSVQT 204
+ Y N L +Q
Sbjct: 173 -LDYVRDNRN--LVLQL 186
>gi|317495598|ref|ZP_07953966.1| pyruvate formate-lyase 1-activating enzyme [Gemella moribillum
M424]
gi|316914412|gb|EFV35890.1| pyruvate formate-lyase 1-activating enzyme [Gemella moribillum
M424]
Length = 263
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 28/196 (14%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F + G G R VF F GC +C++C +
Sbjct: 22 VESFGNVDGPGI---RYVVF--FQGC-----------MLRCKYCHNPDTWKMHNPDAKVV 65
Query: 66 NVDQLADLIEEQWITGEKE-GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
V QL I + E G ++GGE LLQ+D + L + L V+T G
Sbjct: 66 TVSQLTKEIVKYRNFFEASEGGGVTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG-- 123
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
G + I + ++ + + LQ +
Sbjct: 124 ----GFYVNTPTMNEKILELISLTDLFLMDLKHIDDKQHIKLTKRTNKNILQ-FARFLSD 178
Query: 183 ENTNLAISYCFQNPKW 198
+ I + PKW
Sbjct: 179 NGAKMWIRHVLV-PKW 193
>gi|320527904|ref|ZP_08029071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Solobacterium moorei F0204]
gi|320131700|gb|EFW24263.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Solobacterium moorei F0204]
Length = 383
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G+VA +GCN +C FC+ + K +++ + ++
Sbjct: 164 GKVAATIYTAGCN-----------MKCPFCNQKDLVFIPEKYRYIAPEEILSYLNQRSGL 212
Query: 81 GEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
+ V++GGEPLLQ +P I+ + + G+ + ++TNGT
Sbjct: 213 LDG----VVISGGEPLLQEELIPFIRQIKELGYAVKLDTNGTN 251
>gi|206900847|ref|YP_002251405.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Dictyoglomus thermophilum H-6-12]
gi|206739950|gb|ACI19008.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Dictyoglomus thermophilum H-6-12]
Length = 228
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 32/164 (19%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G + GCN C FC + Q KG +Y+ + + + I+ +
Sbjct: 16 GIPSFVIFTQGCNFK-----------CPFCHNPELISQRKKG-QYSEEFILEEIDRRRKL 63
Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC------- 132
+ V+TGGEP LQ D+P + + K+ I ++TNG+
Sbjct: 64 ----IKGVVITGGEPTLQEDLPSFLFKIKKKRLLIKLDTNGSNPKMLIEIIKSNLVDYVA 119
Query: 133 ----VSPKAGCDLKIKGGQE----LKLVFPQVNVSPENYIGFDF 168
SP E LK +F + + EN I F+
Sbjct: 120 MDFKTSPSKYHKAIGLTENETKKYLKNIFESLKILRENKIKFEI 163
>gi|218457967|ref|ZP_03498058.1| organic-radical-activating protein [Rhizobium etli Kim 5]
Length = 184
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 36/177 (20%)
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT--IEPP 125
+ +E L+GG P +Q PLI+ + +G+ A+ET G+
Sbjct: 1 MSAEAIWQEVTKLSGGRPMTVSLSGGNPAIQPLGPLIELGHSQGYRFALETQGSVARNWF 60
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKL----------------VFPQVNVSPENYIGFDFE 169
+ +D + +SPK EL VF + + +G +
Sbjct: 61 RDLDVLVLSPKPPSSGMSTNWGELGNCLRLTAGGPEIALKIVVFDDADYAFARQVGERYP 120
Query: 170 RF--SLQPMDGPFLEENTNLA---ISYCFQNPKW-------------RLSVQTHKFI 208
LQP + + + A I W R+ Q H +
Sbjct: 121 YIPLYLQPGNHTPPPPDDDDARIDIDGVMDRMHWLVEKVTVDGWFAPRVLPQLHVLL 177
>gi|210630236|ref|ZP_03296326.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279]
gi|210160562|gb|EEA91533.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279]
Length = 272
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 49/165 (29%), Gaps = 36/165 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-GGRYN 66
E T+ G G R VF GC +C +C G+ G
Sbjct: 25 ESMGTVDGPGV---RFVVF--TQGCP-----------MRCAYCHNPDTWAVGSGAGTSVT 68
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V+++ D E +TGGEPLLQ + L A++ NG +
Sbjct: 69 VERIIDEFESNRPF--YRTGGITVTGGEPLLQPEFVGDLFAAMHANP-------NGRVH- 118
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
G K V Q ++ + D E
Sbjct: 119 -------TCLDSCGYAYNPKKPARFDKVLAQTDLVLLDIKHSDPE 156
>gi|147678756|ref|YP_001212971.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
thermopropionicum SI]
gi|146274853|dbj|BAF60602.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
thermopropionicum SI]
Length = 303
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 59/236 (25%)
Query: 11 LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFCDT------ 52
++ G G VF GC L + S C+FC
Sbjct: 14 YSIDDGPGIRT---TVF--LKGCPLRCRWCSNPESQDPKPEIMYRATSCKFCKNCIKACK 68
Query: 53 DFVGIQGTKG---------------------------GRYNVDQLADLIEEQWITGEKEG 85
I KG R +VD++ ++I++ + G
Sbjct: 69 KEAIIAEEKGVLIDRNLCIRCGKCEEVCLYKAIELMGKRVSVDEVMNVIKKDIHFYQDSG 128
Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
++GGE L Q + L++ ++ G ++T+G + + D+K+
Sbjct: 129 GGVTISGGEALFQPNFTEALLKECHELGIHTCLDTSGYGSTSDLKRILEYTDLVYYDIKL 188
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYC 192
K Q N + + + R + P EE T +A
Sbjct: 189 VDPFAHKEYTGQSNELILHNLKVVVDSGKQLVIRIPVIPGINDSSEEITAIAEKVI 244
>gi|306820990|ref|ZP_07454609.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304550931|gb|EFM38903.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 259
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 23/138 (16%)
Query: 3 LYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
+ + I F ++G+G ++F GCN+ + F
Sbjct: 8 ILPVHRIIPFSNVEGQGNRT---SIF--LQGCNINCLYCHNPEMIG-------FSNDDTH 55
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
++ L D I+ R ++GGE + V L + ++K G ++T
Sbjct: 56 N---MTIETLIDKIKNNMPF----IRGITMSGGEATIHSDKLVILFKEVHKLGLTCYIDT 108
Query: 119 NGTIEPPQGIDWICVSPK 136
NG + + + + + K
Sbjct: 109 NGYFDIDEKKEMVEHTDK 126
>gi|304317366|ref|YP_003852511.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778868|gb|ADL69427.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 227
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 34/191 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C + + + +
Sbjct: 19 STVF--TSGCNFT-----------CPYC------HNSQLIDLQKPIKSEEEFIDYLKKRK 59
Query: 83 KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVS 134
+TGGEP L I+ + GF + ++TNG+ D+I +
Sbjct: 60 NLIDGVCITGGEPTLWKDLKNFIKTIRDLGFSVKLDTNGSRPNVIEDLLNDNLLDYIAMD 119
Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDF----ERFSLQPMDGPFLEENTNL 187
KA + L +K +++ + +++ I ++F + L D + ++
Sbjct: 120 VKAPKNKYGLFVKNNEDIGRIVKSIDLIKNCGIDYEFRTTVNKKLLSTDDFLSIANMISV 179
Query: 188 AISYCFQNPKW 198
Y Q K+
Sbjct: 180 CKRYVLQRYKY 190
>gi|210609920|ref|ZP_03288174.1| hypothetical protein CLONEX_00358 [Clostridium nexile DSM 1787]
gi|210152713|gb|EEA83719.1| hypothetical protein CLONEX_00358 [Clostridium nexile DSM 1787]
Length = 260
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 30/199 (15%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG---TKGGRYNVDQL 70
G+G VF GC L +C++C T G + +
Sbjct: 18 DGDGLRT---VVFM--KGCPL-----------RCQWCSTPESQSIECMMDYGYDATPESI 61
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN--GTIEPPQ 126
+I + + G ++GGE LLQ D +++ G A+E++ G E +
Sbjct: 62 MKIIRKDEVFYFHSGGGVTISGGEVLLQSDFVRDILKECRDEGINTAIESSLYGPYEALE 121
Query: 127 GI------DWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
+ ++ G K++ + + G R P
Sbjct: 122 KMLPYLNTVFVDFKLADEQQHLKYTGASNKIIKDNIRRMDAEFTGDIHVRIPTIP-TINM 180
Query: 181 LEENTNLAISYCFQNPKWR 199
EEN L + + R
Sbjct: 181 TEENMRLTAEFVRPLKQVR 199
>gi|320642894|gb|EFX12095.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H- str. 493-89]
gi|320648351|gb|EFX17006.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
O157:H- str. H 2687]
Length = 215
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 5/130 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V+ L + G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP--PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
+A K G ++TNG + P + + V+ DLK + + + N
Sbjct: 60 WFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRT 119
Query: 161 ENYIGFDFER 170
+ + +
Sbjct: 120 LEFAKYLANK 129
>gi|319901645|ref|YP_004161373.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P
36-108]
gi|319416676|gb|ADV43787.1| pyruvate formate-lyase activating enzyme [Bacteroides helcogenes P
36-108]
Length = 241
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGR 64
E T G G R+ VF GC +C +C DT I+ G
Sbjct: 8 ESMGTFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IEIKGGTP 47
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
+ +++ + Q K+G +GGEP LQ +PL++ L K G I +++NG I
Sbjct: 48 TSSEEILQMAISQKAFFGKKG-GITFSGGEPTLQAEALIPLLKDLKKNGIHICLDSNGGI 106
Query: 123 EPPQGIDWICVSP 135
+ + ++
Sbjct: 107 WNEKIEELFSLTD 119
>gi|225387330|ref|ZP_03757094.1| hypothetical protein CLOSTASPAR_01083 [Clostridium asparagiforme
DSM 15981]
gi|225046579|gb|EEG56825.1| hypothetical protein CLOSTASPAR_01083 [Clostridium asparagiforme
DSM 15981]
Length = 232
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 19/102 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GCN +C FC + + GT Y ++ D + ++ E
Sbjct: 20 ATVF--TGGCNF-----------RCPFCHNSEL-LPGTVEAEYETGEVLDFLRKRKGILE 65
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+TGGEP LQ D+ I+++ + G + ++TNG
Sbjct: 66 G----VCITGGEPTLQPDLEDFIRSVRELGLLVKLDTNGYKP 103
>gi|317497017|ref|ZP_07955345.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316895677|gb|EFV17831.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 304
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 57/209 (27%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QC----------- 47
F T G+G VF GC L Q+ +C
Sbjct: 11 FSTHDGDGIRT---TVF--LKGCPLKCVWCQNPEGISIRKRPIYFENRCIHCKTCIAKSK 65
Query: 48 -------------------------RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+C T + + +V+ + + I +
Sbjct: 66 NQGVTMENDQIHIHPNRNENWNTIIDWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYR 122
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
++GGEPLLQ L++A K G A+ET+ + + + + D
Sbjct: 123 YGNGGVTISGGEPLLQWKFTKELLKACKKEGIHTAIETSLYADQEVIKEILPYLDRIFAD 182
Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFE 169
K+ ++ N ++ I + E
Sbjct: 183 FKLATEKDHMHYTGVSNQKIKDNIRYLLE 211
>gi|224012289|ref|XP_002294797.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|224013668|ref|XP_002296498.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
gi|220968850|gb|EED87194.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
gi|220969236|gb|EED87577.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 247
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 31/192 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG--IQGTKGGR- 64
E F + G G VF GC S +C +C + K
Sbjct: 7 ETFTSNDGPGVRT---LVF--LQGC-----------SKRCIYCSNPDAQCIVDPLKFPEV 50
Query: 65 -YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNK--RGFEIAVETN 119
+ +++ D+++ + +GG+PLLQ D + + G ++T
Sbjct: 51 AISDEEVIDVLKRYELFLSPNSGGVTFSGGDPLLQPDFVNAVFEKAKDIGSGLTTCIDTA 110
Query: 120 GT------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
G + D++ + K + + +I ++ L
Sbjct: 111 GYGSPKIWDKCLPNTDYVMLCIKGMDLKLASFISGVSKFQNECARDFARHIRDHYKNIKL 170
Query: 174 QPMDGPFLEENT 185
+ L++ T
Sbjct: 171 S-IRWVLLKDMT 181
>gi|291514350|emb|CBK63560.1| pyruvate formate-lyase 1-activating enzyme [Alistipes shahii WAL
8301]
Length = 232
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 26/120 (21%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GCN +C +C DT I+ G +
Sbjct: 3 TFDGPGL---RLVVF--LQGCNF-----------RCLYCANPDT----IEAGAGTLTDPA 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
++ + +Q + G +GGEP Q VPL+++L + G + +++NG + P
Sbjct: 43 EILRMAVDQKPFFGRRG-GVTFSGGEPTFQAAELVPLVKSLKEAGIHVCIDSNGGVWNPA 101
>gi|182416944|ref|ZP_02948328.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
5521]
gi|237668693|ref|ZP_04528677.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182379242|gb|EDT76743.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
5521]
gi|237657041|gb|EEP54597.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 305
Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/250 (14%), Positives = 68/250 (27%), Gaps = 68/250 (27%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRFC----- 50
+L G G VF GC L + S CR C
Sbjct: 13 YSLHDGPGIRTN---VF--LKGCPLRCIWCSNPESQNPEPEIFYLSNKCIGCRECSECID 67
Query: 51 -----------DTDFVGIQGT------------------KGGRYNVDQLADLIEEQWITG 81
D + +G + ++ D++E+
Sbjct: 68 KCDYNAISIASDKKITINKSKCKNCLICSSQCPTGAIVQQGKLMTIKEILDIVEKDSDFY 127
Query: 82 EKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQ--------GIDWI 131
+ L+GGEPL+Q + + + +R A+ET G +
Sbjct: 128 SRSEGGITLSGGEPLMQGEFTINLLKEAKRRRMNTAIETCGYADYETLKRCAMNLDTILF 187
Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF--LEENTNLAI 189
+ K G E +++ N ++ + + P+ F EE+
Sbjct: 188 DIKSMDNDKHKKFTGLENEVILNNFNKLCVDFQKLNKCVRT--PVIPTFNDNEEDIRAIA 245
Query: 190 SYCFQNPKWR 199
+ P +
Sbjct: 246 DFLKNKPNVK 255
>gi|257880503|ref|ZP_05660156.1| glycerol dehydratase activator [Enterococcus faecium 1,230,933]
gi|257814731|gb|EEV43489.1| glycerol dehydratase activator [Enterococcus faecium 1,230,933]
Length = 276
Score = 48.7 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEE 76
AG V GC L +C +C I+ G +++ D IE+
Sbjct: 24 AGLRTV-VYLKGCPL-----------RCAWCSIPESQSKQIEKGFGQTMTAEEVMDEIEK 71
Query: 77 QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ ++GGE L+Q D ++Q G +ET+
Sbjct: 72 DAVFYFHSDGGVTISGGEALVQADFAKEILQKSKYIGINTVLETS 116
>gi|166031378|ref|ZP_02234207.1| hypothetical protein DORFOR_01067 [Dorea formicigenerans ATCC
27755]
gi|166028783|gb|EDR47540.1| hypothetical protein DORFOR_01067 [Dorea formicigenerans ATCC
27755]
Length = 302
Score = 48.7 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 68/231 (29%), Gaps = 56/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA---------------------------- 45
G G VF GCNL + S
Sbjct: 16 DGPGIRT---TVF--LKGCNLRCKWCANPESQSFKPEILFKEIKCIGCGKCINSCPQQAI 70
Query: 46 -------------QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+C+ C D + + +G Y V++L +++ G
Sbjct: 71 KNMPGYGMITDSDECKLCGTCIDGCYADARVRQGTDYTVEELMEVLGRDEHYYLASGGGI 130
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
+GGEPL+ + + KRG+ I +ET G + CD K
Sbjct: 131 TFSGGEPLMYSKFIHACARKIRKRGWNILIETCGQVPQENIEMIASDVDTIYCDYKHYDP 190
Query: 147 QELKL---VFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCF 193
++ K V + +S +I FE F L+ P + T +
Sbjct: 191 EKHKELTGVDNRQIISNIRWIDEHFEGDFYLRYPYIPGCNDGTEAIEQFLK 241
>gi|28379123|ref|NP_786015.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum WCFS1]
gi|254557252|ref|YP_003063669.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum JDM1]
gi|308181316|ref|YP_003925444.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|28271961|emb|CAD64866.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum WCFS1]
gi|254046179|gb|ACT62972.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum JDM1]
gi|308046807|gb|ADN99350.1| formate acetyltransferase activating enzyme [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 267
Score = 48.7 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 36/156 (23%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-- 61
IF ++ G G VF F GC L +C++C +
Sbjct: 14 IFNIQKFSINDGPGIRT---VVF--FKGCPL-----------RCKWCSNPESQSGEQESM 57
Query: 62 -----------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALN 108
G VD + +I + E+ G +GGE L Q + L +A+
Sbjct: 58 YDEQTAKQTIVGDYMTVDDIMKVILQDKDFYEESGGGVTFSGGEVLFQASFAIELAKAVK 117
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
G +A ET G P +++ D K
Sbjct: 118 AAGINLACETTGYARPKVFNEFMSYMDFMYYDCKQW 153
>gi|116512687|ref|YP_811594.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
cremoris SK11]
gi|125624774|ref|YP_001033257.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
cremoris MG1363]
gi|116108341|gb|ABJ73481.1| Pyruvate-formate lyase-activating enzyme [Lactococcus lactis subsp.
cremoris SK11]
gi|124493582|emb|CAL98567.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071574|gb|ADJ60974.1| pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 263
Score = 48.7 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 22/115 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC +C++C ++ K +
Sbjct: 19 ESFGSVDGPGVR------FIIFMQGC-----------RMRCKYCHNPDTWALKSDKATKR 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
V+ + D E ++GGE LLQ+D + L + G ++T
Sbjct: 62 TVEDVMDEALRFRGF-WGEKGGITVSGGEALLQIDFVLALFKYAKSLGIHTTLDT 115
>gi|289167177|ref|YP_003445444.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6]
gi|288906742|emb|CBJ21576.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6]
Length = 264
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 43/197 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F + G G F F GC+ +C++C ++ K
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMESNKSRER 61
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
VD + +G ++GGE LLQ+D + L + G ++T
Sbjct: 62 TVDDVLTEALRYRGFWGNKG-GITVSGGEALLQIDFLIALFTKAKEHGIHCTLDTCAL-- 118
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
K + ++ + ++ + D E+ + +
Sbjct: 119 --------------PFRNKPRYLEKFDKLMAVTDLVLLDIKEIDEEQHKIV---TSQTNK 161
Query: 184 NTNLAISYCFQ--NPKW 198
N Y P W
Sbjct: 162 NILACAQYLSDIGKPVW 178
>gi|169333654|ref|ZP_02860847.1| hypothetical protein ANASTE_00038 [Anaerofustis stercorihominis DSM
17244]
gi|169259648|gb|EDS73614.1| hypothetical protein ANASTE_00038 [Anaerofustis stercorihominis DSM
17244]
Length = 303
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 63/240 (26%), Gaps = 58/240 (24%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA------------------------ 45
++ G G VF GC L + S
Sbjct: 14 YSIHDGPGIRT---VVF--LKGCPLKCLWCANPESQLSEPHIVYFKDKCISDLNCKKVCP 68
Query: 46 ----------------QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
+C C D + G +D++ E + E
Sbjct: 69 NNAITFDKEGIKINENKCSKCMLCVDNCYATALKVYGKNLTIDEIVSKCMEDKLFYETSN 128
Query: 86 RYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
L+GGEPL Q + ++ L +G A+ET G + + D+K
Sbjct: 129 GGVTLSGGEPLFQFEAAHEILSRLKSKGIHTAIETTGYVSNENIKKIMDYVDLFLFDIKA 188
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFER----FSLQPMDGPFLEE--NTNLAISYCFQNPK 197
+ K + N + + + E P+ + + I++
Sbjct: 189 VNIDKHKRLTGVDNHIIHDNLRYLDEHNKNIIIRVPVIPSLNDSKDDMLNIINFVKNLKN 248
>gi|156937491|ref|YP_001435287.1| radical SAM domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156566475|gb|ABU81880.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
Length = 352
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 17/161 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-V 99
+R + C FC + +G G ++ + D T +Y TGGEPLL+
Sbjct: 19 ERCNFNCIFCHS-----EGAGRGSFDELSVNDYDMIAEATSRLGLKYVKFTGGEPLLRSD 73
Query: 100 DVPLIQALNKRGF-EIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKGG---QE 148
+I + + GF EI++ TNG + P G+ WI VS + + +
Sbjct: 74 LEEIIHSFKEHGFEEISITTNGFLLPERTEGLKEAGVSWINVSLHSLKRQRFRRITGVDA 133
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
L V + + EN I L+ ++ +EE AI
Sbjct: 134 LNRVLNGIEKALENGIEVRVNVVVLRGINEDEVEEIVKYAI 174
>gi|77408113|ref|ZP_00784860.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
COH1]
gi|77173297|gb|EAO76419.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
COH1]
Length = 258
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/214 (20%), Positives = 63/214 (29%), Gaps = 43/214 (20%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKMVPETMRDAITNESVI 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G +VD + + + + E+ G L+GGE Q + +++ G A+ET
Sbjct: 62 VGEEKSVDDIIEEVLKDIDFYEESGGGITLSGGEIFAQFEFAKAILKRAKSLGIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RF 171
Q ID I DLK + + N S I + F R
Sbjct: 122 TAYTRHEQFIDLIQYVDFIYTDLKHYNSLKHQEKTMVKNASIIKNIHYAFANGKTIVLRI 181
Query: 172 SLQPMDGPFLEENTNLAISYCF-QNPKWRLSVQT 204
+ P LE+ A C R VQ
Sbjct: 182 PVIPNFNDSLEDAEEFA---CLFDRLDIR-QVQL 211
>gi|225569332|ref|ZP_03778357.1| hypothetical protein CLOHYLEM_05414 [Clostridium hylemonae DSM
15053]
gi|225162131|gb|EEG74750.1| hypothetical protein CLOHYLEM_05414 [Clostridium hylemonae DSM
15053]
Length = 260
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLAD 72
GEG +F +GC L C +C + V+++ D
Sbjct: 29 DGEGIRTN---IF--LAGCPL-----------ACAWCSNPEGQSLHNAMTSCMTVEEVVD 72
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+++Q I G +GGE +Q L L G +A+ET G E D
Sbjct: 73 KVKKQMIFYRISGGGVTFSGGEATVQQEFLRRLSYRLYDMGISLAIETCGQFEYEVVKDI 132
Query: 131 I 131
Sbjct: 133 F 133
>gi|224373777|ref|YP_002608149.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Nautilia profundicola AmH]
gi|223588973|gb|ACM92709.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Nautilia profundicola AmH]
Length = 225
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 27/116 (23%)
Query: 11 LTLQGEGGHA-----GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
++Q + GR+ FSGCN +C +C V +
Sbjct: 5 YSIQ---KFSSLDFPGRLCAILWFSGCN-----------MRCPYCYNKDVVF---GEKQI 47
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
D++ + ++++ + TGGE L ++ P + + + GFEI ++TNG
Sbjct: 48 EEDEVLEFLKKRIGLLDG----VSFTGGEATLYKNIIPFSRKIKEMGFEIKLDTNG 99
>gi|25010387|ref|NP_734782.1| hypothetical protein gbs0313 [Streptococcus agalactiae NEM316]
gi|23094739|emb|CAD45958.1| unknown [Streptococcus agalactiae NEM316]
gi|319744293|gb|EFV96657.1| pyruvate formate-lyase activating enzyme [Streptococcus agalactiae
ATCC 13813]
Length = 258
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 63/214 (29%), Gaps = 43/214 (20%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKMVPETMRDAITNESVI 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G +VD + + + + E+ G L+GGE Q + +++ G A+ET
Sbjct: 62 VGEEKSVDDIIEEVLKDIDFYEESGGGITLSGGEIFAQFEFAKAILKRAKSLGIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RF 171
Q +D I DLK + + N S I + F R
Sbjct: 122 TAYTRHEQFVDLIQYVDFIYTDLKHYNSLKHQEKTMVKNASIIKNIHYAFANGKTIVLRI 181
Query: 172 SLQPMDGPFLEENTNLAISYCF-QNPKWRLSVQT 204
+ P LE+ A C R VQ
Sbjct: 182 PVIPNFNDSLEDAEEFA---CLFDRLDIR-QVQL 211
>gi|167762452|ref|ZP_02434579.1| hypothetical protein BACSTE_00807 [Bacteroides stercoris ATCC
43183]
gi|167699558|gb|EDS16137.1| hypothetical protein BACSTE_00807 [Bacteroides stercoris ATCC
43183]
Length = 232
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 26/118 (22%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVD 68
T G G R+ VF GC +C +C DT I G
Sbjct: 3 TFDGPGL---RLVVF--LQGCPF-----------RCLYCANPDT----IDVKGGTPTPAG 42
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
++ + Q K+G +GGEP LQ +PL + L G I ++TNG I
Sbjct: 43 EILQMAVSQKAFFGKKG-GITFSGGEPTLQAEALIPLFKDLKANGIHICLDTNGGIWN 99
>gi|315659818|ref|ZP_07912677.1| pyruvate formate-lyase activating enzyme [Staphylococcus
lugdunensis M23590]
gi|315495106|gb|EFU83442.1| pyruvate formate-lyase activating enzyme [Staphylococcus
lugdunensis M23590]
Length = 251
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 25/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G GC +C +C
Sbjct: 9 VESMGTVDGPGLR-----YILFTQGC-----------LLRCLYCHNPDTWKINEPSREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD++ + I + G ++GGEPLLQ+ L +AL G ++T+
Sbjct: 53 VDEMVNEILPYQPYFDASGGGVTVSGGEPLLQMPFLEALFKALKAYGIHTCIDTS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
G ++ D + + L ++ + L E
Sbjct: 108 -AGCANDTIAFNRHFDTLQQYTDLILLDIKHIDNDKHMALTGRPNTHIL-KFAQKLSEMK 165
Query: 185 TNLAISYCF 193
+ I +
Sbjct: 166 QPVWIRHVL 174
>gi|291287831|ref|YP_003504647.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Denitrovibrio acetiphilus DSM 12809]
gi|290884991|gb|ADD68691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Denitrovibrio acetiphilus DSM 12809]
Length = 229
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 33/155 (21%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR-Y 87
F+GCNL +CR+C N + +EE + E +
Sbjct: 27 FNGCNL-----------RCRYCH---------NPELVNSALGENRLEEFLSSLEGKDIEG 66
Query: 88 CVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVSPK--- 136
++GGEPL L ++ L RGF + ++TNG+ D++ V K
Sbjct: 67 VAVSGGEPLFLPDMPEFLRTLKDRGFLVKLDTNGSYPGRLERVCGEGLADFVSVDLKAFN 126
Query: 137 -AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ + + ++V E+ +GF+
Sbjct: 127 DSDVKEITRSNYGIDKFIKTIDVLREHKVGFEVRH 161
>gi|146329598|ref|YP_001210199.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus
VCS1703A]
gi|146233068|gb|ABQ14046.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus
VCS1703A]
Length = 249
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 49/169 (28%), Gaps = 23/169 (13%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
E + G G F F GC +C +C T
Sbjct: 12 ETCGAVDGPGLR------FIAFFQGC-----------LMRCLYCHNRDSWPLTTDKSEVT 54
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
V +L I+ G +GGEPLLQ A + ++TNG
Sbjct: 55 TVSKLMQEIKTYQHYLRASGGGVTASGGEPLLQHAFIADWFTACQEMNLHTCLDTNGFAR 114
Query: 124 PPQGIDWICVS--PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+ DLK ++ K++ N N+ + ER
Sbjct: 115 QYDHDLIRLLDHTDLVMLDLKQINPEKHKVLVGVPNDKTLNFARYLQER 163
>gi|22536508|ref|NP_687359.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
2603V/R]
gi|76787302|ref|YP_329047.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
agalactiae A909]
gi|76797822|ref|ZP_00780087.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
18RS21]
gi|77404959|ref|ZP_00782060.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
H36B]
gi|77410625|ref|ZP_00786985.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
CJB111]
gi|77413311|ref|ZP_00789506.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
515]
gi|22533340|gb|AAM99231.1|AE014206_11 pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
2603V/R]
gi|76562359|gb|ABA44943.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
agalactiae A909]
gi|76586836|gb|EAO63329.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
18RS21]
gi|77160625|gb|EAO71741.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
515]
gi|77163340|gb|EAO74291.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
CJB111]
gi|77176398|gb|EAO79166.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
H36B]
Length = 258
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/214 (20%), Positives = 63/214 (29%), Gaps = 43/214 (20%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKMVPETMRDAITNESVI 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G +VD + + + + E+ G L+GGE Q + +++ G A+ET
Sbjct: 62 VGEEKSVDDIIEEVLKDIDFYEESGGGITLSGGEIFAQFEFAKAILKRAKSLGIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-------RF 171
Q ID I DLK + + N S I + F R
Sbjct: 122 TAYTRHEQFIDLIQYVDFIYTDLKHYNSLKHQEKTMVKNASIIKNIHYAFANGKTIVLRI 181
Query: 172 SLQPMDGPFLEENTNLAISYCF-QNPKWRLSVQT 204
+ P LE+ A C R VQ
Sbjct: 182 PVIPNFNDSLEDAEEFA---CLFDRLDIR-QVQL 211
>gi|51850059|dbj|BAD42364.1| putative benzylsuccinate synthase activating enzyme
[Magnetospirillum sp. TS-6]
Length = 319
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 60/175 (34%)
Query: 1 MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------Q 46
MK+ I EI F +LQ G G +F GC L + + +
Sbjct: 1 MKIPLITEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDTRREMFYYENR 54
Query: 47 CRFC---------------DTD-----------------------FVGIQGTKGGRYNVD 68
C C DT +G G VD
Sbjct: 55 CVGCGRCVAVCSTGASTLVDTGGKSPTLVVNRDKCDRCLRCAAVCLTEARGISGQAMTVD 114
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
++ + G L+GG+PL+ + + L + L+ G +A+ET+
Sbjct: 115 EILREALSDKPFYKNSGGGVTLSGGDPLMYPEFVLELARRLHDEGVHLAMETSCF 169
>gi|163857402|ref|YP_001631700.1| hypothetical protein Bpet3090 [Bordetella petrii DSM 12804]
gi|163261130|emb|CAP43432.1| pflA [Bordetella petrii]
Length = 253
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 26/119 (21%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF +GC +C +C + ++G + E +
Sbjct: 57 VFI--AGCP-----------WRCSYCHNPHLQVRGGHYD-------WKAVLEFLNGRQGL 96
Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPKA 137
V +GGEPL + +P +++A+ GF +A+ T G +DW+ KA
Sbjct: 97 LDAVVFSGGEPLSEPRLPQMVRAVRTLGFRVALHTAGIYPSRLQDLLPSLDWVGFDVKA 155
>gi|257883510|ref|ZP_05663163.1| glycerol dehydratase activator [Enterococcus faecium 1,231,502]
gi|257891910|ref|ZP_05671563.1| glycerol dehydratase activator [Enterococcus faecium 1,231,410]
gi|257894775|ref|ZP_05674428.1| glycerol dehydratase activator [Enterococcus faecium 1,231,408]
gi|260558188|ref|ZP_05830385.1| predicted protein [Enterococcus faecium C68]
gi|261206565|ref|ZP_05921264.1| predicted protein [Enterococcus faecium TC 6]
gi|294620265|ref|ZP_06699590.1| BssD [Enterococcus faecium E1679]
gi|314996175|ref|ZP_07861240.1| glycyl-radical enzyme activating family protein [Enterococcus
faecium TX0133a01]
gi|257819168|gb|EEV46496.1| glycerol dehydratase activator [Enterococcus faecium 1,231,502]
gi|257828270|gb|EEV54896.1| glycerol dehydratase activator [Enterococcus faecium 1,231,410]
gi|257831154|gb|EEV57761.1| glycerol dehydratase activator [Enterococcus faecium 1,231,408]
gi|260075770|gb|EEW64075.1| predicted protein [Enterococcus faecium C68]
gi|260079182|gb|EEW66874.1| predicted protein [Enterococcus faecium TC 6]
gi|291593506|gb|EFF25055.1| BssD [Enterococcus faecium E1679]
gi|313589639|gb|EFR68484.1| glycyl-radical enzyme activating family protein [Enterococcus
faecium TX0133a01]
Length = 323
Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEE 76
AG V GC L +C +C I+ G +++ D IE+
Sbjct: 17 AGLRTV-VYLKGCPL-----------RCAWCSIPESQSKQIEKGFGQTMTAEEVMDEIEK 64
Query: 77 QWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ ++GGE L+Q D ++Q G +ET+
Sbjct: 65 DAVFYFHSDGGVTISGGEALVQADFAKEILQKSKYIGINTVLETS 109
>gi|297197550|ref|ZP_06914947.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083]
gi|297146770|gb|EFH28330.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083]
Length = 1138
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 21/112 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F SGC L +C +C G +VD++
Sbjct: 911 VDGPGTR------FVLFVSGCPL-----------RCLYCANPDTWHM-RDGKETSVDEVM 952
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
IE+ G +TGGEPLLQ +++ G A++T+G
Sbjct: 953 REIEKYRAFVTTAGGGVTVTGGEPLLQPAFTGEILRRCKDTGLHTALDTSGF 1004
>gi|161614797|ref|YP_001588763.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161364161|gb|ABX67929.1| hypothetical protein SPAB_02549 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 215
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V+ L + G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
+A K G ++TNG +
Sbjct: 60 WFRACKKEGIHTCLDTNGFVRR 81
>gi|291558950|emb|CBL37750.1| glycyl-radical enzyme activating protein family [butyrate-producing
bacterium SSC/2]
Length = 304
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 46/159 (28%), Gaps = 57/159 (35%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QC----------- 47
F T G+G VF GC L Q+ +C
Sbjct: 11 FSTHDGDGIRT---TVF--LKGCPLKCVWCQNPEGISIRKRPIYFENRCMHCKTCIEKSK 65
Query: 48 -------------------------RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+C T + + +V+ + + I +
Sbjct: 66 NQGVTMENDQIHIHPNRNENWNTIIDWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYR 122
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
++GGEPLLQ L++A K G A+ET+
Sbjct: 123 YGNGGVTISGGEPLLQWKFTKELLKACKKEGIHTAIETS 161
>gi|229817484|ref|ZP_04447766.1| hypothetical protein BIFANG_02747 [Bifidobacterium angulatum DSM
20098]
gi|229785273|gb|EEP21387.1| hypothetical protein BIFANG_02747 [Bifidobacterium angulatum DSM
20098]
Length = 280
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 19/112 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y ++ +
Sbjct: 51 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-LEAMI 93
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
I+ + G +GGE ++Q + A + G ++T+G
Sbjct: 94 KKIDRYADLFKATGGGITFSGGESMMQPAFVSRVFHAAKQMGVHTCLDTSGF 145
>gi|90422594|ref|YP_530964.1| pyruvate formate-lyase activating [Rhodopseudomonas palustris
BisB18]
gi|90104608|gb|ABD86645.1| Pyruvate formate-lyase activating [Rhodopseudomonas palustris
BisB18]
Length = 267
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 19/116 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
EI + G G +GC +C++C +
Sbjct: 35 EIGGAVDGPGIR-----YVLFLAGC-----------LLRCQYCHNPDSWHMHHGKPSNSR 78
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
D L D I L+GGEPL+Q D +++ + G A++T G
Sbjct: 79 DVLRD-IAAYTKFLMHAHGGVTLSGGEPLVQPDFTHAILRGCKEMGLHTALDTAGF 133
>gi|298368431|ref|ZP_06979749.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282434|gb|EFI23921.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sp. oral
taxon 014 str. F0314]
Length = 253
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 19/118 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E T+ G G GC +C +C K
Sbjct: 15 VESCGTVDGPGLR-----YVLFLQGC-----------LMRCLYCHNRDTWDFHTDKCQEM 58
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
V+Q+ + E G TGGEPLLQ + A + G ++TNG
Sbjct: 59 TVEQVMKQVMSYRHYLEATGGGVTATGGEPLLQYEFVRDWFTACREHGIHTCLDTNGY 116
>gi|154488715|ref|ZP_02029564.1| hypothetical protein BIFADO_02022 [Bifidobacterium adolescentis
L2-32]
gi|154082852|gb|EDN81897.1| hypothetical protein BIFADO_02022 [Bifidobacterium adolescentis
L2-32]
Length = 280
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y + +
Sbjct: 51 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-YEAMV 93
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
IE + G +GGE ++Q + A + G ++T+G + D
Sbjct: 94 KKIERYADLFKATGGGITFSGGESMMQPAFVSRVFHAAKQMGVHTCLDTSGFLGASYTDD 153
Query: 130 WI 131
+
Sbjct: 154 MV 155
>gi|213027682|ref|ZP_03342129.1| hypothetical protein Salmonelentericaenterica_37148 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 102
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V+ L + G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
+A K G ++TNG +
Sbjct: 60 WFRACKKEGIHTCLDTNGFVRR 81
>gi|90424475|ref|YP_532845.1| pyruvate formate-lyase activating [Rhodopseudomonas palustris
BisB18]
gi|90106489|gb|ABD88526.1| Pyruvate formate-lyase activating [Rhodopseudomonas palustris
BisB18]
Length = 267
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 19/116 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
EI + G G +GC +C++C +
Sbjct: 35 EIGGAVDGPGIR-----YVLFLAGC-----------LLRCQYCHNPDSWHMHHGKPSNSR 78
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGT 121
D L D I L+GGEPL+Q D + + G A++T G
Sbjct: 79 DVLRD-IAAYTKFLMHAHGGVTLSGGEPLVQPDFTHAVLRGCKEMGLHTALDTAGF 133
>gi|294792114|ref|ZP_06757262.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 6_1_27]
gi|294457344|gb|EFG25706.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 6_1_27]
Length = 198
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 98 QVDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFP 154
DV + N ++ +ETNGTI + W K L + ++ V
Sbjct: 64 DKDVDKRERPNNSPYDFNIETNGTIVPSFHRDNVWFTYDYKTPSSLAEESMNIDIFKVAT 123
Query: 155 QVNV------SPENYIGFD--------FERFSLQPMDGPFLEENTNLAISYCF--QNPKW 198
+ ++ SPE+ + + P+ G + I Y
Sbjct: 124 ERDLIKFVVGSPEDLDCMRRIISKYPTVAQIYVSPVWGQIEAAS---IIDYMKTYNLQNV 180
Query: 199 RLSVQTHKF 207
R +Q HKF
Sbjct: 181 RFQLQIHKF 189
>gi|325262177|ref|ZP_08128915.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
D5]
gi|324033631|gb|EGB94908.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
D5]
Length = 296
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 50/166 (30%), Gaps = 53/166 (31%)
Query: 1 MKLYSIKEI-FLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QC 47
M++ ++ +I + +L G G VF GCNL + + +C
Sbjct: 1 MQMMTVNQIQYFSLYDGPGIRT---TVF--LQGCNLRCAWCHNPETWSLYASVSYAKERC 55
Query: 48 RFC--------------D-TDFVGIQGT------------------KGGRYNVDQLADLI 74
C D + G +Y+ L + +
Sbjct: 56 VQCGACGSVCPSHAHIFDENKHLFEPEKCIRCGACAEVCCTEALEMNGTQYSAVGLYEKL 115
Query: 75 EEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
E +GGEPLLQ + L K G +A+ET
Sbjct: 116 VRDQRLYEISNGGVTFSGGEPLLQWEALEEICVMLRKNGIHVAMET 161
>gi|295084358|emb|CBK65881.1| Pyruvate-formate lyase-activating enzyme [Bacteroides xylanisolvens
XB1A]
Length = 205
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 17/137 (12%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ GEG F GC L +C++C RY+ +QL
Sbjct: 15 TIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWERYDCNQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + + GGEPLLQ + + + L + I VET+ + +
Sbjct: 59 EEVRKDELYFLASCGGVTFGGGEPLLQSEFIRQFRQLCGPEWRITVETSLNVPQQNVEEL 118
Query: 131 ICVSPKAGCDLKIKGGQ 147
I + D+K
Sbjct: 119 ISIIDNYIIDIKDMNNN 135
>gi|323351046|ref|ZP_08086703.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
VMC66]
gi|322122770|gb|EFX94479.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
VMC66]
gi|324991334|gb|EGC23267.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK353]
gi|325687086|gb|EGD29109.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK72]
gi|327462052|gb|EGF08381.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK1057]
gi|327474565|gb|EGF19970.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK408]
gi|328946888|gb|EGG41025.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK1087]
Length = 269
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 28/169 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
E F + G G F F GC+ +C++C T +
Sbjct: 23 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWEMETNKSQLR 65
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET----- 118
VD + +G ++GGE LLQ+D + + G ++T
Sbjct: 66 TVDDVLQEALRYKGFWGNKG-GITVSGGEALLQIDFLIAFFTKAKELGIHCTLDTCALPF 124
Query: 119 -NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
N + + V+ D+K ++ K+V Q N + +
Sbjct: 125 RNTPRYLKKFDKLMAVTDLVLLDIKEINEEQHKIVTSQTNKNILACAKY 173
>gi|167765640|ref|ZP_02437693.1| hypothetical protein CLOSS21_00124 [Clostridium sp. SS2/1]
gi|167712686|gb|EDS23265.1| hypothetical protein CLOSS21_00124 [Clostridium sp. SS2/1]
Length = 309
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 46/159 (28%), Gaps = 57/159 (35%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QC----------- 47
F T G+G VF GC L Q+ +C
Sbjct: 16 FSTHDGDGIRT---TVF--LKGCPLKCVWCQNPEGISIRKRPIYFENRCMHCKTCIEKSK 70
Query: 48 -------------------------RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+C T + + +V+ + + I +
Sbjct: 71 NQGVTMENDQIHIHPNRNENWNTIIDWCPTGAIAMDS---REMSVEMVMEEIRKDKSFYR 127
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
++GGEPLLQ L++A K G A+ET+
Sbjct: 128 YGNGGVTISGGEPLLQWKFTKELLKACKKEGIHTAIETS 166
>gi|324993692|gb|EGC25611.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK405]
gi|324994995|gb|EGC26908.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK678]
gi|327462962|gb|EGF09283.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK1]
Length = 269
Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 28/169 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
E F + G G F F GC+ +C++C T +
Sbjct: 23 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWEMETNKSQLR 65
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET----- 118
VD + +G ++GGE LLQ+D + + G ++T
Sbjct: 66 TVDDVLQEALRYKGFWGNKG-GITVSGGEALLQIDFLIAFFTKAKELGIHCTLDTCALPF 124
Query: 119 -NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
N + + V+ D+K ++ K+V Q N + +
Sbjct: 125 RNTPRYLKKFDKLMAVTDLVLLDIKEINEEQHKIVTSQTNKNILACAKY 173
>gi|269954959|ref|YP_003324748.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Xylanimonas cellulosilytica DSM 15894]
gi|269303640|gb|ACZ29190.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Xylanimonas cellulosilytica DSM 15894]
Length = 232
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G++A GC +C +C + + + + G ++ + + +
Sbjct: 21 GKLAAVVFLQGCP-----------WRCVYCHNEEI-LDPREPGTMPWFEVVEFLRRRRGL 68
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEP 124
+ V +GGEPLL +P + GF + + T G
Sbjct: 69 LDG----VVFSGGEPLLSKALPTAIGEVRNLGFAVGLHTGGAWPR 109
>gi|52549916|gb|AAU83765.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon
GZfos33H6]
Length = 230
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 18/100 (18%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCN C +C + ++ I T +
Sbjct: 22 VF--TQGCNFK-----------CPYCHNP----ELVDPKLFSHPIPEADIFAFLQTRRGK 64
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L + + + F + ++TNG+
Sbjct: 65 LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104
>gi|238789327|ref|ZP_04633114.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia frederiksenii
ATCC 33641]
gi|238722659|gb|EEQ14312.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia frederiksenii
ATCC 33641]
Length = 215
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V++L G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEVTVEELVKEAITYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
+A ++ G ++TNG +
Sbjct: 60 WFRACHEEGIHTCLDTNGFVRR 81
>gi|325696320|gb|EGD38211.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK160]
Length = 269
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 28/169 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
E F + G G F F GC+ +C++C T +
Sbjct: 23 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWEMETNKSQLR 65
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET----- 118
VD + +G ++GGE LLQ+D + + G ++T
Sbjct: 66 TVDDVLQEALRYKGFWGNKG-GITVSGGEALLQIDFLIAFFTKAKELGIHCTLDTCALPF 124
Query: 119 -NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
N + + V+ D+K ++ K+V Q N + +
Sbjct: 125 RNTPRYLKKFDKLMAVTDLVLLDIKEINEEQHKIVTSQTNKNILACAKY 173
>gi|238795843|ref|ZP_04639356.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia mollaretii
ATCC 43969]
gi|238720306|gb|EEQ12109.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia mollaretii
ATCC 43969]
Length = 215
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V++L G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
+A ++ G ++TNG +
Sbjct: 60 WFRACHEEGIHTCLDTNGFVRR 81
>gi|238753495|ref|ZP_04614858.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia ruckeri ATCC
29473]
gi|238708448|gb|EEQ00803.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia ruckeri ATCC
29473]
Length = 215
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 15/156 (9%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V++L G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
+A +K G ++TNG + + + DL + +++ Q V N
Sbjct: 60 WFRACHKEGIHTCLDTNGFVRRYDPVIDELLDE---TDLVMLDLKQMDDAIHQNLVGVSN 116
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ +F R+ + N I Y P W
Sbjct: 117 HRTLEFARY--------LAKRNQKTWIRYVVV-PGW 143
>gi|119026009|ref|YP_909854.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
adolescentis ATCC 15703]
gi|118765593|dbj|BAF39772.1| pyruvate formate-lyase 1 activating enzyme [Bifidobacterium
adolescentis ATCC 15703]
Length = 292
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
++ G G VF SGC L C++C Y + +
Sbjct: 63 SVDGPGTRM---TVFM--SGCPLR-----------CQYCQNPDTWKMRDGKPVY-YEAMV 105
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGID 129
IE + G +GGE ++Q + A + G ++T+G + D
Sbjct: 106 KKIERYADLFKATGGGITFSGGESMMQPAFVSRVFHAAKQMGVHTCLDTSGFLGASYTDD 165
Query: 130 WI 131
+
Sbjct: 166 MV 167
>gi|123441843|ref|YP_001005826.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122088804|emb|CAL11610.1| pyruvate formate-lyase 1 activating enzyme [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 215
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V++L G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
+A ++ G ++TNG +
Sbjct: 60 WFRACHEEGIHTCLDTNGFVRR 81
>gi|332162215|ref|YP_004298792.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325666445|gb|ADZ43089.1| pyruvate formate lyase-activating enzyme 1 [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 215
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G V++L G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGKEVTVEELVKEAVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
+A ++ G ++TNG +
Sbjct: 60 WFRACHEEGIHTCLDTNGFVRR 81
>gi|145219616|ref|YP_001130325.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Prosthecochloris vibrioformis DSM 265]
gi|145205780|gb|ABP36823.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Chlorobium phaeovibrioides DSM 265]
Length = 232
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
SGCN +C +C + + G D + +
Sbjct: 30 TSGCNF-----------RCPYCHNPELVLPDEFGS--TPLLSFDEVLARITRNRNLLGGV 76
Query: 89 VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
V+TGGEP + ++ L G ++ ++TNG+ G
Sbjct: 77 VVTGGEPTIHQSLPEALRTLKGLGLKVKLDTNGSRPEMLGQ 117
>gi|149194702|ref|ZP_01871797.1| putative radical-activating enzyme [Caminibacter mediatlanticus
TB-2]
gi|149135125|gb|EDM23606.1| putative radical-activating enzyme [Caminibacter mediatlanticus
TB-2]
Length = 222
Score = 48.4 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 27/175 (15%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
FSGCN +C +C + + + D + E T
Sbjct: 25 FSGCN-----------MRCPYCYNKDIVFGKKQIEK-------DEVIEFLKTRVGLLDGV 66
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVSPKAGCD 140
V TGGE L D+ P + + GFEI ++TNG D+I + KA +
Sbjct: 67 VFTGGEATLYKDIVPFAKKIKNLGFEIKLDTNGINFEVIKELIDKKLVDYIALDFKAPKN 126
Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ + + + FE + D EE+ N I
Sbjct: 127 KFYEITKNKNYEKFEKTLDFLINSNIKFEVRTTVHTDL-LDEEDINEIIKVLKDK 180
>gi|167037076|ref|YP_001664654.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320115491|ref|YP_004185650.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166855910|gb|ABY94318.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319928582|gb|ADV79267.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 228
Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 30/157 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ G + + D ++++ E
Sbjct: 19 ATVFV--SGCNFK-----------CPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVS 134
+TGGEP L I+ + FE+ ++TNG+ D+I +
Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQVLENLLDEGLLDYIAMD 119
Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDF 168
KA + + +K +E+ V V + + I ++F
Sbjct: 120 IKAPIEKYGIFLKNKKEIDNVQKSVEIIKNSDIDYEF 156
>gi|315651933|ref|ZP_07904935.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium
saburreum DSM 3986]
gi|315485762|gb|EFU76142.1| [formate-C-acetyltransferase]-activating enzyme [Eubacterium
saburreum DSM 3986]
Length = 280
Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 54/186 (29%), Gaps = 42/186 (22%)
Query: 3 LYS--IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-------------- 44
+YS I +I F ++ G G A+F GCN + +
Sbjct: 1 MYSADINKIIPFSSVDGPGNRT---AIF--LQGCNFNCKYCHNPETRNLCINCMDCVPVC 55
Query: 45 ----------------AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+C CD + R + E+ R
Sbjct: 56 PAAALSDKDGKVIFAAEKCIACDNCIKVCKHGATPRIVRMTSKETFEKICENVPF-IRGV 114
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
+GGE L D + + G +++NG+I+ D + V D+K
Sbjct: 115 TFSGGECTLYPDFMREVFVLCKQIGLGTMIDSNGSIDFKNFSDLLEVCDGVMLDIKAYDY 174
Query: 147 QELKLV 152
E V
Sbjct: 175 NEHIKV 180
>gi|256810531|ref|YP_003127900.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus fervens AG86]
gi|256793731|gb|ACV24400.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus fervens AG86]
Length = 240
Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 38/187 (20%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F GCN +C +C + V++L + I+
Sbjct: 22 AVIF--LHGCN-----------MRCPYCHN--LNHILGHKKEMTVEELFNNID------F 60
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
V++GGEP LQ D + + + ++GF + ++TNGT
Sbjct: 61 FFADAIVISGGEPTLQKDAVIEIAKYAKEKGFPVKIDTNGTRPEVIEELVKNNLIDYVAI 120
Query: 141 LKIKGGQELKLVFPQVNVSPENYIG-------------FDFERFSLQPMDGPFLEENTNL 187
+ K E F R + PM +E+
Sbjct: 121 DVKCKFDKYKEFVKCKEDGEEIKKKILKIIDLCKKNNVFVECRTTFVPM--VMDKEDIEE 178
Query: 188 AISYCFQ 194
Sbjct: 179 IAKTVKD 185
>gi|15673795|ref|NP_267970.1| pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
lactis Il1403]
gi|281492407|ref|YP_003354387.1| pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp.
lactis KF147]
gi|12724840|gb|AAK05911.1|AE006411_6 pyruvate-formate lyase activating enzyme [Lactococcus lactis subsp.
lactis Il1403]
gi|281376071|gb|ADA65562.1| Pyruvate formate-lyase activating enzyme [Lactococcus lactis subsp.
lactis KF147]
gi|326407302|gb|ADZ64373.1| pyruvate formate lyase activating enzyme [Lactococcus lactis subsp.
lactis CV56]
Length = 264
Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRY 65
E F ++ G G F F GC +C++C ++ K
Sbjct: 20 ESFGSVDGPGVR------FIIFMQGC-----------RMRCKYCHNPDTWALKSDKATER 62
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
V+ + D E ++GGE LLQ+D + L + G ++T
Sbjct: 63 TVEDVMDEALRFRGF-WGEKGGITVSGGEALLQIDFVLALFKYAKSLGIHTTLDT 116
>gi|331092439|ref|ZP_08341264.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401282|gb|EGG80871.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 303
Score = 48.0 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 15/174 (8%)
Query: 35 WSGREQDRLSAQCRFCDT--DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
+ DR C+ C T D+ + G +Y + +L +++ ++ E+ L
Sbjct: 74 NCKQCTDRTK--CKVCSTCLDYCVNNAREVVGKQYTIAELVKEVDKDYMFYEESFGGVTL 131
Query: 91 TGGEPLLQVDV---PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGE + Q L++ L ++G+ I ++T G + D+K+ +
Sbjct: 132 SGGEVMAQDMEYIEELLKKLKRKGYNITIDTCGFAPEENFQIVLPYVDTFLYDIKLMDNE 191
Query: 148 ELKLVFPQVNVSPENYIGF---DFERFSL-QPMDG--PFLEENTNLAISYCFQN 195
+ K Q N + + + R + P+ G +E ISY +N
Sbjct: 192 KHKKYMGQSNELIFTNLKYLSDNGARIYIRIPVIGGVNDSDEEIQAIISYLKEN 245
>gi|125718548|ref|YP_001035681.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
sanguinis SK36]
gi|125498465|gb|ABN45131.1| Pyruvate formate-lyase-activating enzyme, putative [Streptococcus
sanguinis SK36]
gi|325690982|gb|EGD32982.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK115]
gi|325695084|gb|EGD36987.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK150]
gi|327470462|gb|EGF15918.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK330]
gi|327490123|gb|EGF21911.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
SK1058]
Length = 269
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 28/169 (16%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
E F + G G F F GC+ +C++C T +
Sbjct: 23 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWEMETNKSQLR 65
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET----- 118
VD + +G ++GGE LLQ+D + L + G ++T
Sbjct: 66 TVDDVLQEALRYKGFWGNKG-GITVSGGEALLQIDFLIALFTKAKELGIHCTLDTCALPF 124
Query: 119 -NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
N + + V+ D+K ++ K+V Q N + +
Sbjct: 125 RNTPRYLKKFDKLMAVTDLVLLDIKEINEEQHKIVTSQTNKNILACAKY 173
>gi|187929187|ref|YP_001899674.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12J]
gi|187726077|gb|ACD27242.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12J]
Length = 237
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 28/139 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + + + D
Sbjct: 28 FSSVDWPGQLA--AVVFV--AGCP-----------WRCHYCHNPHLQTRT---RTLDWDD 69
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE----- 123
+ ++ + + V +GGEPL + +P LI+ + G++I + T G
Sbjct: 70 VFAFLQRRKGLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLAD 125
Query: 124 PPQGIDWICVSPKAGCDLK 142
+DW+ + K
Sbjct: 126 VLPQVDWVGLDIKTSAPHY 144
>gi|293605242|ref|ZP_06687628.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Achromobacter piechaudii ATCC 43553]
gi|292816298|gb|EFF75393.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Achromobacter piechaudii ATCC 43553]
Length = 264
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 35/199 (17%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G A VF SGC +C +C T+ RY+
Sbjct: 55 FSTVDWPGQLA--AVVFI--SGCP-----------WRCHYC---HNTELQTRAARYDWRD 96
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE----- 123
+E + + V +GGEPL + +P LI+ + + G+ + + T G
Sbjct: 97 ARAFLESRAGLLDA----VVFSGGEPLSEPRLPSLIRDVRRMGYRVGLHTAGIYPLRLAD 152
Query: 124 PPQGIDWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
+ +DWI + KA G D + + + + R + P
Sbjct: 153 VMRHLDWIGLDIKADAQGYDDITGRRDSQRPAMACLTQLL-SAGKYFECRITWHPDW--- 208
Query: 181 LEENTNLAISYCFQNPKWR 199
L+E LA++ + R
Sbjct: 209 LDEARLLALADTLAHRGVR 227
>gi|90407167|ref|ZP_01215355.1| Act [Psychromonas sp. CNPT3]
gi|90311743|gb|EAS39840.1| Act [Psychromonas sp. CNPT3]
Length = 246
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E + G G F GC +C++C G +
Sbjct: 11 ETCGAVDGPGIR------FIIFLQGC-----------LMRCKYCHNRDTW-ALDGGKEMS 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
V++L I + + G ++GGE +LQ + + +A G ++TNG +
Sbjct: 53 VEELMTEIVQYRNYMQASGGGITISGGEAMLQPEFVKAMFEACRLEGIHTCLDTNGFVRR 112
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ L IK + K +
Sbjct: 113 IDDTTKAVLELSDLVLLDIKQIDDHKHI 140
>gi|322385886|ref|ZP_08059528.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus
ATCC 51100]
gi|321270065|gb|EFX52983.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus
ATCC 51100]
Length = 265
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C++C T +
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWEMETNKSQ-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ + D+++E ++GGE LLQ+D + + G ++T
Sbjct: 60 LRTVDDILQEALRYKGFWGNKGGITVSGGEALLQIDFLIAFFTKAKELGIHCTLDTC 116
>gi|288927620|ref|ZP_06421467.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
taxon 317 str. F0108]
gi|288330454|gb|EFC69038.1| pyruvate formate-lyase 1-activating enzyme [Prevotella sp. oral
taxon 317 str. F0108]
Length = 247
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F SGC +CR+C + R +
Sbjct: 11 ESFGSVDGPGIR------FIIFLSGC-----------KMRCRYCHNPDTWAMKSADMR-S 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
D+L KEG ++GGE LLQ+D + L + G ++T
Sbjct: 53 ADELLQQALRFRPYWGKEG-GITVSGGEALLQIDFMLELFEKAKALGINTCLDT 105
>gi|325290818|ref|YP_004266999.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Syntrophobotulus glycolicus DSM 8271]
gi|324966219|gb|ADY56998.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Syntrophobotulus glycolicus DSM 8271]
Length = 222
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 30/188 (15%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF FSGCN +C +C ++ + ++ ++ T +
Sbjct: 19 ATVF--FSGCNF-----------RCGYCHNP-TLVKNEGKPGISTGEVCSFLQ----TRQ 60
Query: 83 KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTI-----EPPQGIDWICVSPK 136
LTGGEPLL +V + + + GF++ ++TNG+ E +D+I + K
Sbjct: 61 GLLDGVCLTGGEPLLSGEVKTLAKGIKELGFKLKLDTNGSNLEKLKEIAPFLDYIALDIK 120
Query: 137 AGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
A + + + V VN + I +F L P+ E L Y
Sbjct: 121 AAPEKYAQLTNCPEAWTKVGRTVNWLRTSGIQHEFRTTVL-PVW--HSPEELRLIREYLG 177
Query: 194 QNPKWRLS 201
KW L
Sbjct: 178 AGEKWILQ 185
>gi|269120548|ref|YP_003308725.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
gi|268614426|gb|ACZ08794.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
Length = 273
Score = 48.0 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 53/198 (26%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC------------- 50
IF +L G G VF F GC L +C +C
Sbjct: 6 IFNIQRYSLNDGSGIRT---MVF--FKGCRL-----------RCPWCSNPESQSSKIEIM 49
Query: 51 ----------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
D D G G Y +D+L + + + L+GGE
Sbjct: 50 INKEKKKKYEQYVGSVDEDPTGTYEKSGKWYKLDELMKEVLKDEVFFNASKGGVTLSGGE 109
Query: 95 PLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKL 151
L Q + + ++ L + G AVET G + + + + DLK + + K+
Sbjct: 110 ILEQGEFVLEFLKELKEHGINTAVETCGYGKKEILEEILKYTDTVLFDLKIMDNERSKKI 169
Query: 152 VFPQVNVSPENYIGFDFE 169
+ ++ EN+
Sbjct: 170 LIGASDIIKENFRKAAAA 187
>gi|145630302|ref|ZP_01786083.1| hypothetical protein CGSHi22421_06882 [Haemophilus influenzae
R3021]
gi|144984037|gb|EDJ91474.1| hypothetical protein CGSHi22421_06882 [Haemophilus influenzae
R3021]
Length = 262
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVD 68
F ++G+G ++F GC L C +C + T+ + ++
Sbjct: 17 FSNVEGQGNRT---SIF--LQGCKLN-----------CLYCHNPETIPRYTESAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L D + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYDQVMEATPF----IRGVTVSGGEPTIHHKKLVPLFKALRSKGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 IRSLIDVTDKFLFDLKGEG 135
>gi|315221939|ref|ZP_07863850.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus
F0211]
gi|315188905|gb|EFU22609.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus
F0211]
Length = 265
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 24/119 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------KMRCQYCHNPDTWAMETNNSR-- 59
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ D+++E G+ ++GGE LLQ++ L + G ++T
Sbjct: 60 ERTVEDILQEALRYRGFWGKKGGITVSGGEALLQINFVTALFTKAKELGIHCTLDTCAM 118
>gi|83592610|ref|YP_426362.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
gi|83575524|gb|ABC22075.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
Length = 232
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 36/120 (30%), Gaps = 9/120 (7%)
Query: 28 RFSGCNLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
R S C+ C + C + G G R D + + +
Sbjct: 12 RLSLCDWPGELVATVFLRGCPWRC--PYCHNPGLLGARDPSDPAWEDVFGFLQSRRGLLD 69
Query: 87 YCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPKAGCD 140
V +GGEP I A GF + + T G +DW+ KA D
Sbjct: 70 GVVFSGGEPTTQGGLGAAIDAARGLGFRVGLHTGGAFPDRLAALLPHLDWVGFDVKAPFD 129
>gi|15669828|ref|NP_248642.1| coenzyme PQQ synthesis protein PqqE [Methanocaldococcus jannaschii
DSM 2661]
gi|41018449|sp|Q59026|Y1632_METJA RecName: Full=Uncharacterized protein MJ1632
gi|1592222|gb|AAB99653.1| coenzyme PQQ synthesis protein (pqqE) [Methanocaldococcus
jannaschii DSM 2661]
Length = 255
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN C++C + +Y+VD++ + I E + + ++
Sbjct: 44 GCNFK-----------CKYC-----FFKPLSCKKYSVDEILNKILE--VNENYKLDKILI 85
Query: 91 TGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
GGEP L L + L GF + + TNG
Sbjct: 86 AGGEPTLQNDLSELTKLLKDEGFYLMLSTNGYY 118
>gi|154497199|ref|ZP_02035895.1| hypothetical protein BACCAP_01492 [Bacteroides capillosus ATCC
29799]
gi|150273598|gb|EDN00726.1| hypothetical protein BACCAP_01492 [Bacteroides capillosus ATCC
29799]
Length = 280
Score = 48.0 bits (113), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 46/175 (26%), Gaps = 45/175 (25%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQD------------------------------ 41
T+ G G AVF GCNL +
Sbjct: 15 TVDGPGCRT---AVF--LQGCNLSCAYCHNPETQNLCTGCGLCADHCPSGALERCPDGGV 69
Query: 42 -RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL 97
+C CD + K +++ +E + R ++GGE L
Sbjct: 70 VWNPERCTGCDACIRLCPSLASPKVRTMTPEEVMGAVEHNLLF----IRGITVSGGECTL 125
Query: 98 QV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L RG ++NGT+ + V D+K K
Sbjct: 126 YPEFLTGLFTLARARGLTCLADSNGTVPLAPLSGLMAVCDGVMLDVKSWDPDVHK 180
>gi|158321088|ref|YP_001513595.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alkaliphilus oremlandii OhILAs]
gi|158141287|gb|ABW19599.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alkaliphilus oremlandii OhILAs]
Length = 227
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 29/156 (18%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCN +C +C + G R V+ D ++++ E
Sbjct: 20 TVFF-TGGCNF-----------RCPYCHNSPLVHN--IGERIEVEDAIDFLKKRKRFVEA 65
Query: 84 EGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSP 135
++GGEP L + I + K G + ++TNGT Q +D++ +
Sbjct: 66 ----VCISGGEPTLQRDLYDFIYRIKKEGLLVKLDTNGTNPILLRKLIEDQLLDYVAMDI 121
Query: 136 KAG---CDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
KA ++ + + + V++ EN + ++F
Sbjct: 122 KAPLNQYEMVTQVNVNIHDIQESVHILLENKVDYEF 157
>gi|332179017|gb|AEE14706.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermodesulfobium narugense DSM 14796]
Length = 229
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
L + +R + +C +C F + N+D++ +E++ + V++GG
Sbjct: 17 LSTVLFTERCNFRCPYCHN-FDLVLPNNLETINIDEILSFLEKRRKKLDA----VVISGG 71
Query: 94 EPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
EPLL I+ + + GF I ++TNG+
Sbjct: 72 EPLLHGKELEDFIKKVREMGFLIKIDTNGSFP 103
>gi|145640496|ref|ZP_01796080.1| purine nucleoside phosphorylase [Haemophilus influenzae R3021]
gi|145275082|gb|EDK14944.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.4-21]
Length = 262
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVD 68
F ++G+G R ++F GC L C +C + T+ + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTESAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSKGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|187926826|ref|YP_001893171.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12J]
gi|241665155|ref|YP_002983514.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12D]
gi|187728580|gb|ACD29744.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12J]
gi|240867182|gb|ACS64842.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12D]
Length = 237
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + ++D
Sbjct: 28 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHLQT-----RARSLD- 66
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+ ++ V +GGEPL + L++A+ GF+I + T G
Sbjct: 67 -WNDVDAFLQKRAGLLDGVVFSGGEPLSEPRLPELMRAVRALGFKIGLHTGGIYP 120
>gi|325264807|ref|ZP_08131536.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
sp. D5]
gi|324030099|gb|EGB91385.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
sp. D5]
Length = 315
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 55/194 (28%), Gaps = 59/194 (30%)
Query: 12 TLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------------AQC-RFC-- 50
++Q G G VF GC L + S +C FC
Sbjct: 15 SIQDGPGVRT---TVF--LKGCPLSCQWCANPESQVFRSDIIHVPSTCVHCYRCVSFCTK 69
Query: 51 -----------------DT----------DFVGIQG---TKGGRYNVDQLADLIEEQWIT 80
DT + +G G VD++ D+I
Sbjct: 70 GAVKLPDKIGDNPVFDHDTCVTCENQDVCEHACYEGAIEKVGKPMTVDEVMDVILHDEPF 129
Query: 81 GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138
G ++GGEPL+ L + A+ET G + + + + A
Sbjct: 130 FSNGG-GITVSGGEPLMHPEFLEELFSECQENYIHTAIETCGYVAWDKFEPVLRYTDLAL 188
Query: 139 CDLKIKGGQELKLV 152
D+K K +
Sbjct: 189 YDVKHMDPAAHKEL 202
>gi|260582776|ref|ZP_05850563.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
NT127]
gi|260094226|gb|EEW78127.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
NT127]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVD 68
F ++G+G R ++F GC L C +C + T+ + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTESAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|145637441|ref|ZP_01793100.1| hypothetical protein CGSHiHH_06086 [Haemophilus influenzae PittHH]
gi|145269387|gb|EDK09331.1| hypothetical protein CGSHiHH_06086 [Haemophilus influenzae PittHH]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVD 68
F ++G+G R ++F GC L C +C + T+ + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTESAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|16272464|ref|NP_438678.1| hypothetical protein HI0520 [Haemophilus influenzae Rd KW20]
gi|260580967|ref|ZP_05848790.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1175257|sp|P44743|Y520_HAEIN RecName: Full=Uncharacterized protein HI_0520
gi|1573503|gb|AAC22178.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092326|gb|EEW76266.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVD 68
F ++G+G R ++F GC L C +C + T+ + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTESAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|145628901|ref|ZP_01784701.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.1-21]
gi|145638565|ref|ZP_01794174.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
influenzae PittII]
gi|144979371|gb|EDJ89057.1| purine nucleoside phosphorylase [Haemophilus influenzae 22.1-21]
gi|145272160|gb|EDK12068.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
influenzae PittII]
gi|309750069|gb|ADO80053.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVD 68
F ++G+G R ++F GC L C +C + T+ + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTESAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|307720175|ref|YP_003891315.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfurimonas autotrophica DSM 16294]
gi|306978268|gb|ADN08303.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfurimonas autotrophica DSM 16294]
Length = 233
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 45/154 (29%), Gaps = 25/154 (16%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F FSGCN +C FC + + T E
Sbjct: 31 ACIFW-FSGCN-----------MRCDFCYNKDIVFAKKGSYT------LEDALAFLRTRE 72
Query: 83 KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVSP 135
VL+GGE + + K GF I ++TNGT D++ +
Sbjct: 73 HLLDAVVLSGGEASSYDLTAFCRQIKKLGFLIKLDTNGTNYLHVKQLIDLELLDYVALDY 132
Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
KA + K + DFE
Sbjct: 133 KAPQYKFTQITHSNKYEEFNKTLDLLINSNIDFE 166
>gi|289192125|ref|YP_003458066.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
gi|288938575|gb|ADC69330.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
Length = 229
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 23/124 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN C++C + +Y V+++ D I E + ++
Sbjct: 18 GCNFK-----------CKYC-----FFKPLACKKYKVEEILDKILE--VNMSYGLNKILI 59
Query: 91 TGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
GGEP L + V L + L GF + + TNG D + + +K E
Sbjct: 60 AGGEPTLQKDLVELTKLLKDEGFYLMLSTNGYYLK----DMLDKLEVDEIHIDMKAYDEN 115
Query: 150 KLVF 153
K ++
Sbjct: 116 KHIY 119
>gi|27467133|ref|NP_763770.1| formate acetyltransferase activating enzyme [Staphylococcus
epidermidis ATCC 12228]
gi|57865732|ref|YP_189913.1| pyruvate formate-lyase-activating enzyme [Staphylococcus
epidermidis RP62A]
gi|242243441|ref|ZP_04797886.1| formate acetyltransferase activating enzyme [Staphylococcus
epidermidis W23144]
gi|81672990|sp|Q5HKI0|PFLA_STAEQ RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|81844137|sp|Q8CTX5|PFLA_STAES RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|27314675|gb|AAO03812.1|AE016744_215 formate acetyltransferase activating enzyme [Staphylococcus
epidermidis ATCC 12228]
gi|57636390|gb|AAW53178.1| pyruvate formate-lyase-activating enzyme [Staphylococcus
epidermidis RP62A]
gi|242233061|gb|EES35373.1| formate acetyltransferase activating enzyme [Staphylococcus
epidermidis W23144]
gi|319400458|gb|EFV88692.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis FRI909]
gi|329732203|gb|EGG68557.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis VCU144]
gi|329732749|gb|EGG69097.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis VCU028]
Length = 251
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 50/183 (27%), Gaps = 34/183 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G GC +C +C
Sbjct: 9 VESMGTVDGPGLR-----YILFTQGC-----------LLRCLYCHNPDTWKINEPSREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD++ + I E G ++GGEPLLQ+ L + L G ++T+
Sbjct: 53 VDEMVNEILPYKPYFEASGGGVTVSGGEPLLQMPFLEQLFKELKANGVHTCIDTS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------Q 174
G + D K + L ++ + L Q
Sbjct: 108 -AGCVNDTPAFNRHFDELQKHTDLILLDIKHIDNDKHIKLTGKPNTHILKFARKLSDMKQ 166
Query: 175 PMD 177
P+
Sbjct: 167 PVW 169
>gi|311106097|ref|YP_003978950.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Achromobacter xylosoxidans A8]
gi|310760786|gb|ADP16235.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Achromobacter xylosoxidans A8]
Length = 270
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 35/199 (17%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G A VF +GC +C +C T+ RY+ +
Sbjct: 61 FSTVDWPGQLA--AVVFI--AGCP-----------WRCHYC---HNVELQTRAARYDWRE 102
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
+E + + V +GGEPL + +P +I+ + + G+ + + T G
Sbjct: 103 TRAFLETRKGLLDA----IVFSGGEPLSEPRLPQMIRDVRRMGYRVGLHTAGIYPLRLAD 158
Query: 129 -----DWICVSPKA---GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPF 180
DW+ + KA G D + + I F+ R + P D
Sbjct: 159 VLRYLDWVGLDIKADAQGYDDITGRRDSQRPALACLAQLLAADIDFE-CRITWHP-DWLD 216
Query: 181 LEENTNLAISYCFQNPKWR 199
LA R
Sbjct: 217 ETRLLALARE--LARRGVR 233
>gi|313899253|ref|ZP_07832769.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
sp. HGF2]
gi|312955933|gb|EFR37585.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
sp. HGF2]
Length = 304
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 60/240 (25%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------CRFC----- 50
++ G+G +F F GC L + S + C +C
Sbjct: 12 YSVHDGDGIRT---TIF--FKGCLLNCWWCHNPESQRYAPELMFNREKCSGCGYCRKACS 66
Query: 51 --------D-TDFVGIQGTK-----------------GGRYNVDQLADLIEEQWITGEKE 84
D T G +Y++ +L ++ + E+
Sbjct: 67 HGAITIEEDGTAHTDTDKCVLCADCLDYCLHNNREIVGKQYSIKELMTIVNKDAHFYEES 126
Query: 85 GRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
G L+GGE + Q L + L +G+ +A++T G + D+
Sbjct: 127 GGGVTLSGGEVMTQDIDYLEELCRQLKDKGYNVAIDTCGYAPKESYARLLPYVDTFLYDI 186
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFER-----FSLQPMDGPFLEENTNL-AISYCFQN 195
K + K + N + F + + + + +T L I+Y +
Sbjct: 187 KTLNDEAHKKYMGKSNDVILENLEFLADHRADINIRIPVVVPVNSDADTMLDIITYLKKR 246
>gi|313669389|ref|YP_004049816.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfuricurvum kujiense DSM 16994]
gi|313156586|gb|ADR35263.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfuricurvum kujiense DSM 16994]
Length = 227
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
A+F F+GCNL +C +C + + GR +V+Q ++ ++ E
Sbjct: 26 AAIFW-FAGCNL-----------RCLYCYNPDIVL---GEGRISVEQALSILVKRVGFLE 70
Query: 83 KEGRYCVLTGGE-PLLQVDVPLIQALNKRGFEIAVETNGTIE 123
VL+GGE L +P ++ G++I ++TNG
Sbjct: 71 G----VVLSGGECTLYSDLIPFCHSIKNMGYKIKIDTNGMRP 108
>gi|68249117|ref|YP_248229.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
86-028NP]
gi|68057316|gb|AAX87569.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
influenzae 86-028NP]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVD 68
F ++G+G R ++F GC L C +C + T+ + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTESAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|220905871|ref|YP_002481182.1| Radical SAM domain-containing protein [Cyanothece sp. PCC 7425]
gi|219862482|gb|ACL42821.1| Radical SAM domain protein [Cyanothece sp. PCC 7425]
Length = 324
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R +A+C FCD G + + +++ G +Y TGGEPLL+ DV
Sbjct: 13 RCNARCHFCD----IWALEPGKEADFATIQTNLQDLRRLG---VKYVDFTGGEPLLRADV 65
Query: 102 PL-IQALNKRGFEIAVETN 119
+ + GF ++ TN
Sbjct: 66 EHIYREAKQMGFYTSMTTN 84
>gi|258653371|ref|YP_003202527.1| pyruvate formate-lyase activating enzyme [Nakamurella multipartita
DSM 44233]
gi|258556596|gb|ACV79538.1| pyruvate formate-lyase activating enzyme [Nakamurella multipartita
DSM 44233]
Length = 267
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R+ F SGC L +C +C +D++
Sbjct: 33 VDGPGT---RLTYF--LSGCAL-----------RCLYCQNPDTWRLPDGMPTG-IDEVKA 75
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGT 121
I G ++GGEPLLQ +++ + G A++T+G
Sbjct: 76 RIFRYAPVLRATGGGLTVSGGEPLLQTAFLGRMLRYAKELGLHTAIDTSGF 126
>gi|307152067|ref|YP_003887451.1| pyruvate formate-lyase activating enzyme [Cyanothece sp. PCC 7822]
gi|306982295|gb|ADN14176.1| pyruvate formate-lyase activating enzyme [Cyanothece sp. PCC 7822]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G R +F GC L C +C G +
Sbjct: 29 VESCGTVDGPGI---RYIIF--TQGCPLK-----------CLYCHNPDCRHLS-DGKKIQ 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
V++L I++ + G +TGGEPL+Q + L + + G ++T+G
Sbjct: 72 VEELITEIQKYRSYFQFSGGGVTVTGGEPLMQPEFVEELCRRCQEIGIHTVLDTSGY 128
>gi|153813520|ref|ZP_01966188.1| hypothetical protein RUMOBE_03941 [Ruminococcus obeum ATCC 29174]
gi|149830391|gb|EDM85483.1| hypothetical protein RUMOBE_03941 [Ruminococcus obeum ATCC 29174]
Length = 235
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GR+A CN +C FC + + +++ ++++
Sbjct: 20 GRIAATIFLGSCNF-----------RCPFCQNSSLVLHPADEPVIPEEEVLSFLKKRRGI 68
Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIE 123
+ ++GGEP L I ++ G+ + ++TNGT
Sbjct: 69 LDG----VCISGGEPTLASDLEDFICKIHALGYPVKLDTNGTRP 108
>gi|148825204|ref|YP_001289957.1| hypothetical protein CGSHiEE_00400 [Haemophilus influenzae PittEE]
gi|229846603|ref|ZP_04466711.1| hypothetical protein CGSHi7P49H1_08020 [Haemophilus influenzae
7P49H1]
gi|148715364|gb|ABQ97574.1| hypothetical protein CGSHiEE_00400 [Haemophilus influenzae PittEE]
gi|229810696|gb|EEP46414.1| hypothetical protein CGSHi7P49H1_08020 [Haemophilus influenzae
7P49H1]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G R ++F GC L C +C + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTENAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|319897966|ref|YP_004136163.1| pyruvate-formate lyase-activating enzyme [Haemophilus influenzae
F3031]
gi|317433472|emb|CBY81855.1| Predicted pyruvate-formate lyase-activating enzyme [Haemophilus
influenzae F3031]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G R ++F GC L C +C + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTENAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|148827711|ref|YP_001292464.1| purine nucleoside phosphorylase [Haemophilus influenzae PittGG]
gi|148718953|gb|ABR00081.1| purine nucleoside phosphorylase [Haemophilus influenzae PittGG]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G R ++F GC L C +C + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTENAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|145633528|ref|ZP_01789257.1| hypothetical protein CGSHi3655_05394 [Haemophilus influenzae 3655]
gi|144985897|gb|EDJ92505.1| hypothetical protein CGSHi3655_05394 [Haemophilus influenzae 3655]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G ++F GC L C +C + ++
Sbjct: 17 FSNVEGQGNRT---SIF--LQGCKLN-----------CLYCHNPETIPRYTENAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEATPF----IRGVTVSGGEPTIHHKKLVPLFEALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 IRSLIDVTDKFLFDLKGEG 135
>gi|119385711|ref|YP_916766.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Paracoccus denitrificans PD1222]
gi|119376306|gb|ABL71070.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Paracoccus denitrificans PD1222]
Length = 208
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 7/123 (5%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
R S C+ C + D + +
Sbjct: 11 RLSSCDWPGELVATLFLQGCPW-DCPYCHNPHLIPPEAEGTLDWQEVLGFLAGRRGLLDG 69
Query: 88 CVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE-----PPQGIDWICVSPKAGCDL 141
V +GGEP L + ++A+ GF + T G DW+ KA
Sbjct: 70 VVFSGGEPTLQRGLPEALRAVRALGFRTGLHTAGPYPARLAAVLPLCDWVGFDVKAPFSG 129
Query: 142 KIK 144
+
Sbjct: 130 YRR 132
>gi|169832135|ref|YP_001718117.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Candidatus Desulforudis audaxviator MP104C]
gi|169638979|gb|ACA60485.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Candidatus Desulforudis audaxviator MP104C]
Length = 263
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF R CN +C +C + + ++ D I
Sbjct: 21 ATVFLR--RCNF-----------RCPWC----QNPELVESSLFDTPVPVDDILHYLRRRR 63
Query: 83 KEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGTIE 123
V+TGGEP L + + + + G + ++TNG+
Sbjct: 64 AMLDGLVVTGGEPTLSRYLTLFLTRVKEIGVPVKLDTNGSHP 105
>gi|309972329|gb|ADO95530.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
Length = 262
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G R ++F GC L C +C + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTENAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|322391329|ref|ZP_08064799.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris
ATCC 700780]
gi|321145755|gb|EFX41146.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris
ATCC 700780]
Length = 264
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------QMRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
V + D++EE + ++GGE LLQ+D + L ++G ++T
Sbjct: 60 VRTVDDVLEEALRYRGFWGDKGGITVSGGEALLQIDFLIALFTKAKEKGIHCTLDTC 116
>gi|322387090|ref|ZP_08060701.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis
ATCC 700779]
gi|321142077|gb|EFX37571.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis
ATCC 700779]
Length = 264
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------QMRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
V + D++EE + ++GGE LLQ+D + L ++G ++T
Sbjct: 60 VRTVDDVLEEALRYRGFWGDKGGITVSGGEALLQIDFLIALFTKAKEKGIHCTLDTC 116
>gi|227893100|ref|ZP_04010905.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
ultunensis DSM 16047]
gi|227865078|gb|EEJ72499.1| [formate-C-acetyltransferase]-activating enzyme [Lactobacillus
ultunensis DSM 16047]
Length = 266
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 47/227 (20%), Positives = 70/227 (30%), Gaps = 54/227 (23%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55
IF ++ G G VF F GC L C +C
Sbjct: 12 IFNIQRYSIHDGPGIRT---IVF--FQGCPLK-----------CPWCANPESQGAIKPVT 55
Query: 56 ----GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNK 109
G + T VD + +E+ I G L+GGE L Q + +A +
Sbjct: 56 WIKNGKKETISYWVTVDDVMKEVEKDEIFYRTSGGGLTLSGGECLFQYEFATNVLKAAKE 115
Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF----PQVNVSPENYIG 165
G A+ET G + + + DLKI + V P + + E +
Sbjct: 116 MGISTAIETAGGTSNNAIKSVLPYTDEVLYDLKIMNPLRAQAVIGESVPLIKKNFETALN 175
Query: 166 FDFERFS----LQPMDGPFLEENTNLAISYCFQNPKWRLSV---QTH 205
+ + L P L N +Y LS+ Q H
Sbjct: 176 YPTAHVTPRVPLIPGYT-TLPRNLEQIANYV-------LSLGIHQIH 214
>gi|253568132|ref|ZP_04845543.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
gi|251842205|gb|EES70285.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 1_1_6]
Length = 208
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ GEG F GC L +C++C Y+ QL
Sbjct: 15 STDGEGVTTLVA-----FHGCPL-----------RCKYCLNPQSLHSEDIWKHYDCGQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119
+ +++ + GGEP LQ + + L + ++++VET+
Sbjct: 59 EEVKQDELYFLATHGGITFGGGEPCLQSDFIDEFRQLCGQEWQLSVETS 107
>gi|21886612|dbj|BAC05499.1| BssD [Thauera sp. DNT-1]
Length = 383
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 60/170 (35%)
Query: 6 IKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC- 50
+ EI F +LQ G G VF GC L + + +C C
Sbjct: 57 VTEIQRF-SLQDGPGFRT---TVF--LKGCPLKCPWCHNPETQKVTKEYYYNRDRCVSCG 110
Query: 51 ---------------------------D----------TDFVGIQGTKGGRYNVDQLADL 73
D G + + G +D++
Sbjct: 111 RCAAVCPTGASQLVDGPRGTQTLKLDRDKCTNCMRCVAVCLTGSRESVGVEMTLDEILQE 170
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ G ++GG+PL + L + + +RG +A+ET+
Sbjct: 171 VLSDEPFYRNSGGGVTISGGDPLFHPAFTLELARRIKERGVHVAIETSCF 220
>gi|309798990|ref|ZP_07693247.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis
SK1302]
gi|308117394|gb|EFO54813.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis
SK1302]
Length = 264
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------QMRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
V + D++EE + ++GGE LLQ+D + L ++G ++T
Sbjct: 60 VRTVDDVLEEALRYRGFWGDKGGITVSGGEALLQIDFLIALFTKAKEKGIHCTLDTC 116
>gi|316934450|ref|YP_004109432.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodopseudomonas palustris DX-1]
gi|315602164|gb|ADU44699.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodopseudomonas palustris DX-1]
Length = 210
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 37/126 (29%), Gaps = 15/126 (11%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRF----CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
R S C+ C + C + R + T
Sbjct: 22 VRLSTCDWPGELVATVFCQGCPWQCGYCHNPHL-----LPARGPDQLAWQDVFAFLETRR 76
Query: 83 KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGI-----DWICVSPK 136
V +GGEP LQ D+PL I A+ GF I + T G DWI K
Sbjct: 77 GLLDGVVFSGGEPTLQSDLPLAIAAVRSLGFRIGLHTAGPYPERLARVLPLLDWIGFDVK 136
Query: 137 AGCDLK 142
A
Sbjct: 137 APFAEY 142
>gi|192291021|ref|YP_001991626.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodopseudomonas palustris TIE-1]
gi|192284770|gb|ACF01151.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodopseudomonas palustris TIE-1]
Length = 233
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 37/126 (29%), Gaps = 15/126 (11%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRF----CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
R S C+ C + C + R + T
Sbjct: 22 VRLSTCDWPGELVATVFCQGCPWQCGYCHNPHL-----LPARGPDQLAWQDVFAFLETRR 76
Query: 83 KEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGI-----DWICVSPK 136
V +GGEP LQ D+PL I A+ GF I + T G DWI K
Sbjct: 77 GLLDGVVFSGGEPTLQSDLPLAIAAVRSLGFRIGLHTAGPYPERLARVLPLLDWIGFDVK 136
Query: 137 AGCDLK 142
A
Sbjct: 137 APFAEY 142
>gi|115525108|ref|YP_782019.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas
palustris BisA53]
gi|115519055|gb|ABJ07039.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas
palustris BisA53]
Length = 269
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 19/124 (15%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
EI + G G +GC +C++C +
Sbjct: 37 EIGGAVDGPGIR-----YVLFLAGC-----------LLRCQYCHNPDSWHMHQGKPTNSR 80
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPP 125
+ L D+ G L+GGEPL+Q + + + G A++T G +
Sbjct: 81 EVLRDIATYTNFIAHAHG-GVTLSGGEPLVQPEFAHAILRGCKEMGLHTALDTAGFLGNH 139
Query: 126 QGID 129
Sbjct: 140 ADDY 143
>gi|270292096|ref|ZP_06198311.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143]
gi|270279624|gb|EFA25466.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143]
Length = 264
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 30/170 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET---- 118
+ D++ E + ++GGE LLQ+D + ++G ++T
Sbjct: 60 ERTVDDVLTEALRYRGFWGDKGGITVSGGEALLQIDFLIAFFTKAKEKGIHCTLDTCALP 119
Query: 119 --NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
N + + V+ D+K ++ K+V Q N + +
Sbjct: 120 FRNTPRYLEKFNKLMAVTDLVLLDIKEINEEQHKIVTSQTNKNILACARY 169
>gi|162446916|ref|YP_001620048.1| pyruvate formate lyase activating enzyme [Acholeplasma laidlawii
PG-8A]
gi|161985023|gb|ABX80672.1| pyruvate formate lyase activating enzyme [Acholeplasma laidlawii
PG-8A]
Length = 253
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F G G GC L +C+FC V
Sbjct: 17 ETFGAFDGPGLR-----YVLFLQGCPL-----------RCKFCHNRDTW-GTEDNKLMTV 59
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+++ + + + ++GGE LQ+ L + R ++T+
Sbjct: 60 EEILN--DYNKYRAFYKKGGLTVSGGEATLQIGFLTALFKEAKNRNIHTCLDTS 111
>gi|145635399|ref|ZP_01791101.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
influenzae PittAA]
gi|229844321|ref|ZP_04464461.1| purine nucleoside phosphorylase [Haemophilus influenzae 6P18H1]
gi|145267405|gb|EDK07407.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
influenzae PittAA]
gi|229812570|gb|EEP48259.1| purine nucleoside phosphorylase [Haemophilus influenzae 6P18H1]
Length = 262
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G R ++F GC L C +C + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTENAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFEALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 VCSLIDVTDKFLFDLKGEG 135
>gi|125973165|ref|YP_001037075.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium thermocellum ATCC 27405]
gi|256003963|ref|ZP_05428949.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium thermocellum DSM 2360]
gi|281417360|ref|ZP_06248380.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium thermocellum JW20]
gi|125713390|gb|ABN51882.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium thermocellum ATCC 27405]
gi|255992091|gb|EEU02187.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium thermocellum DSM 2360]
gi|281408762|gb|EFB39020.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium thermocellum JW20]
gi|316940606|gb|ADU74640.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium thermocellum DSM 1313]
Length = 229
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G++A+ GCN+ C +C I G + D+ + E +
Sbjct: 16 GKIAIVVFTPGCNMN-----------CFYCHNK-TLISGGNEEFIDNDE----VLELLVK 59
Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
V++GGEP LQ D+ ++ + G+ + ++TNGT
Sbjct: 60 RRGFIDGVVISGGEPTLQKDLEGFLEKVKSLGYAVKLDTNGTNPH 104
>gi|331002311|ref|ZP_08325829.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410127|gb|EGG89561.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 280
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 50/204 (24%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS------------------- 44
I +I F ++ G G R A+F GCN + +
Sbjct: 6 INKIIPFSSVDGPGN---RAAIF--LQGCNFNCRYCHNPETRNHCINCMDCVPGCPTNAL 60
Query: 45 -----------AQCRFCDT-----DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+C CD + + R + + I E R
Sbjct: 61 KNNNGKVEFYPEKCIGCDNCINICKYGAT--PRIVRLTSRETFEKICENLPF----IRGV 114
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
+GGE +L D + ++ +++NG+++ + + + V+ D+K
Sbjct: 115 TFSGGECMLYPDFMREVFSLCKEKNLGTLIDSNGSVDFKKHLGLLEVTDGVMLDIKAYDF 174
Query: 147 QELKLVFPQVNVSPENYIGFDFER 170
E V + N F ER
Sbjct: 175 DEHIKVTDKGNDIVLKNALFLAER 198
>gi|294678386|ref|YP_003579001.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
SB 1003]
gi|294477206|gb|ADE86594.1| [pyruvate formate-lyase]-activating enzyme-2 [Rhodobacter
capsulatus SB 1003]
Length = 262
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 17/114 (14%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G VF SGC +C +C + G R V+ L +
Sbjct: 38 GMRFVFF-LSGC-----------QFRCLYCHNPDTW-KLHAGRRVAVEDLVAEVAPLASF 84
Query: 81 GEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWI 131
+ +GGEP++Q +AL R G +A++T G + DW
Sbjct: 85 LKF-AGGVTFSGGEPMMQAAFVHATARALKDRFGLHVALDTQGHLHDRVTDDWF 137
>gi|160886082|ref|ZP_02067085.1| hypothetical protein BACOVA_04089 [Bacteroides ovatus ATCC 8483]
gi|293369069|ref|ZP_06615666.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
gi|156108895|gb|EDO10640.1| hypothetical protein BACOVA_04089 [Bacteroides ovatus ATCC 8483]
gi|292635837|gb|EFF54332.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
Length = 205
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ GEG F GC L +C++C Y+ +QL
Sbjct: 15 TIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWESYDCNQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + + GGEPLLQ + + + L + I VET+ + +
Sbjct: 59 EEVRKDELYFLASCGGVTFGGGEPLLQSEFIRQFRQLCGPEWRITVETSLNVPQQNVEEL 118
Query: 131 ICV 133
I +
Sbjct: 119 ISI 121
>gi|328956156|ref|YP_004373489.1| pyruvate formate-lyase activating enzyme [Coriobacterium glomerans
PW2]
gi|328456480|gb|AEB07674.1| pyruvate formate-lyase activating enzyme [Coriobacterium glomerans
PW2]
Length = 265
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 37/193 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E T+ G G R VFC GC +C +C G V
Sbjct: 26 ETMGTVDGPGI---RFVVFC--QGCP-----------MRCAYCHNPDTWR-VDSGASVTV 68
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
+ L + E + ++GGEPLLQ D + G +
Sbjct: 69 EHLVEEFESNRSF--YKTGGITVSGGEPLLQPDF-VGDLF------------GAMHDSPS 113
Query: 128 IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERFSLQPMDGP----FLE 182
G + + +F + ++ + D E SL D F E
Sbjct: 114 GRVHTCLDSCGYAYDPRRPDRFEHLFDECDLVLLDIKHADPEEHRSLCGCDMDSILAFGE 173
Query: 183 ENTNLAISYCFQN 195
E + I+ ++
Sbjct: 174 ELSRRKIATVIRH 186
>gi|150403516|ref|YP_001330810.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus maripaludis C7]
gi|150034546|gb|ABR66659.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus maripaludis C7]
Length = 236
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 35/182 (19%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF SGCN+ G Q+ + T +++ + ++ +
Sbjct: 22 VF--LSGCNMKCGYCQNYETI-------------TTNISEMTAEEVFNSMDLMF------ 60
Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVSP 135
V++GGEP LQ + + L + ++GF + ++TNGT D+I +
Sbjct: 61 AESLVISGGEPTLQPEAVLELAKLAKEKGFPVKLDTNGTNPDLVEKLISDKLLDYIAIDV 120
Query: 136 KAGCDLKIKGGQELKLVFPQVNVSPENYIGFD---FERFSLQPMDGPFLEENTNLAISYC 192
KAG D K K + + + R + P E +
Sbjct: 121 KAGFDNYEKITGYKKEIKENILKIIDTCKKAGVTVECRTTFIPE--LMDESDIEEIAKTV 178
Query: 193 FQ 194
Sbjct: 179 KD 180
>gi|307727418|ref|YP_003910631.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1003]
gi|307587943|gb|ADN61340.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1003]
Length = 411
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQ 69
+ QGE AG LW E R C FC + + T R + +Q
Sbjct: 10 SAQGEAAPAGVPP--------PLWLLAELTYRCPLHCAFC---YNPVDYTAHNRELSTEQ 58
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
++ E G + +GGEPL++ D+ + ++ GF + T+G
Sbjct: 59 WLRVLREARALGAAQ---LGFSGGEPLMRDDLEVLVREARALGFYTNLITSG 107
>gi|210621095|ref|ZP_03292458.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275]
gi|210154916|gb|EEA85922.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275]
Length = 305
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 67/241 (27%), Gaps = 58/241 (24%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------------QCR---- 48
++ G G VF GC L + S +C
Sbjct: 18 YSIHDGPGIRT---IVF--LKGCPLRCKWCSNPESQSYKPDLLYRKGLCIECGRCISACK 72
Query: 49 ----------FCD-TDFV-----------GIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
+ D T G KG V+++ +++ I +
Sbjct: 73 AKAIDPKNKYWVDRTKCTLCGECALVCPSGALSMKGKEMTVEEVIKEVKKDDIQYYRSNG 132
Query: 87 YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT------IEPPQGIDWICVSPKAG 138
L+GGE L Q + +A +G+ A+ET G + ID + + K+
Sbjct: 133 GVTLSGGEALTQPAFAKEIFKACKAKGWHTAIETEGFVNEDVIRDVVPYIDLVLLDIKSI 192
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
K + I R + P EE T +A + P
Sbjct: 193 SSEPHKKFTGVDNEKIMKAAKLIQEITHTIIRVPVIPGFNANEEEITKIA-QFAGSLPNV 251
Query: 199 R 199
R
Sbjct: 252 R 252
>gi|315640725|ref|ZP_07895827.1| pyruvate formate-lyase activating enzyme [Enterococcus italicus DSM
15952]
gi|315483480|gb|EFU73974.1| pyruvate formate-lyase activating enzyme [Enterococcus italicus DSM
15952]
Length = 255
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 24/118 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F T+ G G F F GC +C+FC + +
Sbjct: 13 ENFGTVDGPGVR------FVIFSQGC-----------RMRCQFCHNPDTW--KIDDPKAS 53
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG 120
+ D++ E E ++GGEP L + L + +G ++T G
Sbjct: 54 LRSADDVLAEALKYQSYWGEKGGITVSGGEPLLQLDFLLDLFKKAKAKGIHTTIDTCG 111
>gi|152991509|ref|YP_001357231.1| hypothetical protein NIS_1769 [Nitratiruptor sp. SB155-2]
gi|151423370|dbj|BAF70874.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 227
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 20/102 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
A+F +GCN++ C +C + RY + + ++++ E
Sbjct: 24 AAIFW-LAGCNMY-----------CPYCHNAEIVH---GKNRYPFQKALEFLQKRRGLLE 68
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V++GGEP L + ++ + GF I ++TNG+
Sbjct: 69 G----VVISGGEPTLHPELQTICSSIKELGFLIKLDTNGSRP 106
>gi|262283214|ref|ZP_06060981.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp.
2_1_36FAA]
gi|262261466|gb|EEY80165.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp.
2_1_36FAA]
Length = 269
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
E F + G G F F GC+ +C++C T +
Sbjct: 23 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWEMETNKSQLR 65
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
VD + +G ++GGE LLQ+D + + G ++T
Sbjct: 66 TVDDVLQEALRYKGFWGNKG-GITVSGGEALLQIDFLIAFFTKAKELGIHCTLDTC 120
>gi|251811546|ref|ZP_04826019.1| formate acetyltransferase activating enzyme [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876702|ref|ZP_06285558.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis SK135]
gi|293367469|ref|ZP_06614127.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis M23864:W2(grey)]
gi|251804924|gb|EES57581.1| formate acetyltransferase activating enzyme [Staphylococcus
epidermidis BCM-HMP0060]
gi|281294353|gb|EFA86891.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis SK135]
gi|291318415|gb|EFE58803.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329735838|gb|EGG72118.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis VCU045]
Length = 251
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 50/183 (27%), Gaps = 34/183 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G GC +C +C
Sbjct: 9 VESMGTVDGPGLR-----YILFTQGC-----------LLRCLYCHNPDTWKINEPSREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD++ + I E G ++GGEPLLQ+ L + L G ++T+
Sbjct: 53 VDEMVNEILPYQPYFEASGGGVTVSGGEPLLQMPFLEQLFKELKANGVHTCIDTS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------Q 174
G + D K + L ++ + L Q
Sbjct: 108 -AGCVNDTPAFNRHFDELQKHTDLILLDIKHIDNDKHIKLTGKPNTHILKFARKLSDMKQ 166
Query: 175 PMD 177
P+
Sbjct: 167 PVW 169
>gi|154151136|ref|YP_001404754.1| radical SAM domain-containing protein [Candidatus Methanoregula
boonei 6A8]
gi|153999688|gb|ABS56111.1| Radical SAM domain protein [Methanoregula boonei 6A8]
Length = 270
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 24/109 (22%)
Query: 19 HAGRV--AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GR VF R GC L +C +C + + D++ DLI+
Sbjct: 23 WRGRSVCTVFFR--GCPL-----------RCSYCQNAAIL---AGEDLRDTDEIIDLIQG 66
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123
I V +GGEP +Q D L+ +A K G + ++TNG
Sbjct: 67 SKIAASG----VVFSGGEPTMQKDALLVLARAAKKFGLAVGIQTNGLFP 111
>gi|325576615|ref|ZP_08147333.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus
parainfluenzae ATCC 33392]
gi|325161178|gb|EGC73293.1| [formate-C-acetyltransferase]-activating enzyme [Haemophilus
parainfluenzae ATCC 33392]
Length = 262
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 72/226 (31%), Gaps = 49/226 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++G+G ++F GC L C +C + +G
Sbjct: 17 FSNVEGQGNRT---SIF--LQGCKLN-----------CLYCHNPETIPRYAEGAH---QV 57
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG 127
+ EQ + R ++GGEP + VPL Q L + G ++++G E
Sbjct: 58 SLQYLYEQAMDAVPFIRGVTVSGGEPTIHHKKLVPLFQKLREEGLTCYLDSSGFFEFDAI 117
Query: 128 IDWICVSPKAGCDLK--------------IKGGQELKLVFPQVNVSPENYIGFDFERFS- 172
I V+ K DLK + G K + P + + + + +
Sbjct: 118 RPLIDVTDKFLFDLKGEGLGLQSLCFDRQNRQGIVPKNIIPAHQHIKQENLDRNLKNLAQ 177
Query: 173 LQPMDGP------------FLEENTNLAISYCFQNPKWRL-SVQTH 205
L P++ E+ S P L ++ H
Sbjct: 178 LLPLNKVEEVRLVYVANFFDAEKLVEKVASLLKDYPNVLLKIIRMH 223
>gi|289549543|ref|YP_003470447.1| Pyruvate formate-lyase activating enzyme [Staphylococcus
lugdunensis HKU09-01]
gi|289179075|gb|ADC86320.1| Pyruvate formate-lyase activating enzyme [Staphylococcus
lugdunensis HKU09-01]
Length = 251
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 25/189 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G GC +C +C
Sbjct: 9 VESMGTVDGPGLR-----YILFTQGC-----------LLRCLYCHNPDTWKINEPSREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD++ + I + G ++GGEPLLQ+ L ++L G ++T+
Sbjct: 53 VDEMVNEILPYQPYFDASGGGVTVSGGEPLLQMPFLEALFKSLKAYGIHTCIDTS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN 184
G ++ D + + L ++ + L E
Sbjct: 108 -AGCANDTIAFNRHFDTLQQYTDLILLDIKHIDNDKHMALTGRPNTHIL-KFAQKLSEMK 165
Query: 185 TNLAISYCF 193
+ I +
Sbjct: 166 QPVWIRHVL 174
>gi|304313947|ref|YP_003849094.1| glycyl radical-activating enzyme [Methanothermobacter marburgensis
str. Marburg]
gi|302587406|gb|ADL57781.1| predicted glycyl radical-activating enzyme [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G++++ +GCN +C +C + G + L+D++E+
Sbjct: 15 GKLSLVIFTAGCNF-----------RCPYCHNPELIDGGVE------ADLSDILEDMEKY 57
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTIE 123
+ V++GGEPLLQVD + + R G ++TNG
Sbjct: 58 TDFVDA-VVVSGGEPLLQVDDVEVVLQHARSLGLHTKLDTNGYSP 101
>gi|237720844|ref|ZP_04551325.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
gi|229449679|gb|EEO55470.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_2_4]
Length = 205
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ GEG F GC L +C++C Y+ +QL
Sbjct: 15 TIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPDGVWESYDCNQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + + GGEPLLQ + + + L + I VET+ + +
Sbjct: 59 EEVRKDELYFLASCGGVTFGGGEPLLQSEFIRQFRQLCGPEWRITVETSLNVPQQNVEEL 118
Query: 131 ICV 133
I +
Sbjct: 119 ISI 121
>gi|309776578|ref|ZP_07671558.1| putative pyruvate formate-lyase-activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
gi|308915679|gb|EFP61439.1| putative pyruvate formate-lyase-activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
Length = 304
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 38/209 (18%), Positives = 64/209 (30%), Gaps = 54/209 (25%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRFC----- 50
++ G+G VF F GC+L + S C +C
Sbjct: 12 YSVHDGDGIRT---TVF--FKGCHLNCWWCHNPESQSYLPELMFNREKCSGCGYCLKACT 66
Query: 51 ----------------DT--------DFVGIQGTK--GGRYNVDQLADLIEEQWITGEKE 84
DT D+ + G Y++ +L +I + E+
Sbjct: 67 HGAITIEENGIAHTDPDTCVLCSDCLDYCIHNNREIVGKTYSIKELMSIINKDAQFYEES 126
Query: 85 GRYCVLTGGEPLLQVDV---PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
G L+GGE + Q L + L +G+ IAV+T G + D+
Sbjct: 127 GGGVTLSGGEVMTQDMEYLSELCRQLKDKGYNIAVDTCGYAPQENYAQLLPYVDTFLYDI 186
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFER 170
K + K + N + F +
Sbjct: 187 KTLNDEVHKKYMGKSNAVILENLEFLADH 215
>gi|225390023|ref|ZP_03759747.1| hypothetical protein CLOSTASPAR_03773 [Clostridium asparagiforme
DSM 15981]
gi|225043900|gb|EEG54146.1| hypothetical protein CLOSTASPAR_03773 [Clostridium asparagiforme
DSM 15981]
Length = 228
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 19/113 (16%)
Query: 16 EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
EG H RFSGC L G C G G G + ++ +
Sbjct: 3 EGAHR------IRFSGCAL-CGAC----VEACP------QGALGVYGRERSAGEVVAEVL 45
Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
+ + E G ++GGEP+ Q D L AL G + +ET+G
Sbjct: 46 KDYDYYEDSGGGVTISGGEPMAQADYARELSGALKGAGLHVCMETSGFAPWEA 98
>gi|157151404|ref|YP_001450926.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii
str. Challis substr. CH1]
gi|157076198|gb|ABV10881.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii
str. Challis substr. CH1]
Length = 269
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 22/116 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY- 65
E F + G G F F GC+ +C++C T +
Sbjct: 23 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWEMETNKSQLR 65
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
VD + +G ++GGE LLQ+D + + G ++T
Sbjct: 66 TVDDVLQEALRYKGFWGNKG-GITVSGGEALLQIDFLIAFFTKAKELGIHCTLDTC 120
>gi|160938752|ref|ZP_02086104.1| hypothetical protein CLOBOL_03647 [Clostridium bolteae ATCC
BAA-613]
gi|158438451|gb|EDP16210.1| hypothetical protein CLOBOL_03647 [Clostridium bolteae ATCC
BAA-613]
Length = 275
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 18/169 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL +C FC + + G +L ++ G+
Sbjct: 68 FGCNL-----------RCPFCQNHKISMAGEGDFESVTVSPEELAQKAAELGKNGNIGVA 116
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL+ + + K G + + TNG++ + + V+ DLK
Sbjct: 117 YTYNEPLVGWEYVRDTGRLARKAGMKNVIVTNGSVSDQVLDEILPVADAMNIDLKGFTEN 176
Query: 148 ELKLVFPQVNVSPENYIGF-DFERFSL----QPMDGPFLEENTNLAISY 191
+ + + L P + EE +A
Sbjct: 177 YYRKLGGDLETVKHFITCASRRCHVELTALIVPGENDSDEEMREMAGWI 225
>gi|146306997|ref|YP_001187462.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
mendocina ymp]
gi|226704997|sp|A4XTR4|PQQE_PSEMY RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|145575198|gb|ABP84730.1| coenzyme PQQ biosynthesis protein E [Pseudomonas mendocina ymp]
Length = 384
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + + IE E +
Sbjct: 18 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGAELSTAEW---IEVFRQARELGAAQLGFS 72
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI A G+ + T+G G+D I +S +A +
Sbjct: 73 GGEPLVRQDLAELIAAARGLGYYTNLITSGIGLTEARIAEFADAGLDHIQISFQAADEEV 132
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q ++ + L + +N I C +
Sbjct: 133 NNLLAGSKKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIELCLE 183
>gi|15923217|ref|NP_370751.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus Mu50]
gi|15925930|ref|NP_373463.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus N315]
gi|21281931|ref|NP_645017.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus MW2]
gi|49482459|ref|YP_039683.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49485103|ref|YP_042324.1| putative pyruvate formate-lyase activating enzyme [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57651221|ref|YP_185104.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus COL]
gi|82749934|ref|YP_415675.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
RF122]
gi|87160885|ref|YP_492935.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88193998|ref|YP_498785.1| pyruvate formate-lyase 1 activating enzyme [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148266651|ref|YP_001245594.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus JH9]
gi|150392691|ref|YP_001315366.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus JH1]
gi|151220375|ref|YP_001331198.1| hypothetical protein NWMN_0163 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156978557|ref|YP_001440816.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus Mu3]
gi|161508485|ref|YP_001574144.1| [formate-C-acetyltransferase]-activating enzyme [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221140762|ref|ZP_03565255.1| [formate-C-acetyltransferase]-activating enzyme [Staphylococcus
aureus subsp. aureus str. JKD6009]
gi|253315420|ref|ZP_04838633.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253730571|ref|ZP_04864736.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253734782|ref|ZP_04868947.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus TCH130]
gi|255005022|ref|ZP_05143623.2| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257424355|ref|ZP_05600784.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427032|ref|ZP_05603434.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257429668|ref|ZP_05606055.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus 68-397]
gi|257432315|ref|ZP_05608678.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus E1410]
gi|257435275|ref|ZP_05611326.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257793961|ref|ZP_05642940.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9781]
gi|258408632|ref|ZP_05680917.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A9763]
gi|258421223|ref|ZP_05684150.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9719]
gi|258438971|ref|ZP_05690062.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A9299]
gi|258444206|ref|ZP_05692540.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A8115]
gi|258447087|ref|ZP_05695237.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A6300]
gi|258448545|ref|ZP_05696658.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A6224]
gi|258451657|ref|ZP_05699683.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A5948]
gi|258455779|ref|ZP_05703734.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A5937]
gi|262048305|ref|ZP_06021191.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
D30]
gi|262051089|ref|ZP_06023314.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
930918-3]
gi|269201874|ref|YP_003281143.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus ED98]
gi|282893383|ref|ZP_06301616.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A8117]
gi|282902807|ref|ZP_06310700.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus C160]
gi|282907208|ref|ZP_06315056.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282907552|ref|ZP_06315394.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282912454|ref|ZP_06320250.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282913073|ref|ZP_06320865.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus M899]
gi|282921489|ref|ZP_06329207.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus C427]
gi|282921869|ref|ZP_06329568.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9765]
gi|282922700|ref|ZP_06330390.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282926334|ref|ZP_06333966.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A10102]
gi|283959663|ref|ZP_06377104.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus A017934/97]
gi|284023233|ref|ZP_06377631.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus 132]
gi|293498126|ref|ZP_06665980.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|293511716|ref|ZP_06670410.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|293550326|ref|ZP_06672998.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus M1015]
gi|294849153|ref|ZP_06789897.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9754]
gi|295405496|ref|ZP_06815306.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A8819]
gi|295426761|ref|ZP_06819400.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296274924|ref|ZP_06857431.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus MR1]
gi|297209268|ref|ZP_06925667.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297244833|ref|ZP_06928713.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A8796]
gi|297589036|ref|ZP_06947677.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|300911266|ref|ZP_07128715.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|304380180|ref|ZP_07362900.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|81650121|sp|Q6GCP9|PFLA_STAAS RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|81651923|sp|Q6GK89|PFLA_STAAR RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|81695462|sp|Q5HJF3|PFLA_STAAC RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|81704725|sp|Q7A1W8|PFLA_STAAW RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|81706365|sp|Q7A7X5|PFLA_STAAN RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|81782286|sp|Q99WZ6|PFLA_STAAM RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|122064907|sp|Q2FK43|PFLA_STAA3 RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|122064908|sp|Q2G1D7|PFLA_STAA8 RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|122064909|sp|Q2YV52|PFLA_STAAB RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|13700142|dbj|BAB41441.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus N315]
gi|14245994|dbj|BAB56389.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus Mu50]
gi|21203366|dbj|BAB94067.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus MW2]
gi|49240588|emb|CAG39245.1| putative pyruvate formate-lyase activating enzyme [Staphylococcus
aureus subsp. aureus MRSA252]
gi|49243546|emb|CAG41970.1| putative pyruvate formate-lyase activating enzyme [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57285407|gb|AAW37501.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus COL]
gi|82655465|emb|CAI79853.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
RF122]
gi|87126859|gb|ABD21373.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87201556|gb|ABD29366.1| pyruvate formate-lyase 1 activating enzyme, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147739720|gb|ABQ48018.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus JH9]
gi|149945143|gb|ABR51079.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus JH1]
gi|150373175|dbj|BAF66435.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156720692|dbj|BAF77109.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus Mu3]
gi|160367294|gb|ABX28265.1| [formate-C-acetyltransferase]-activating enzyme [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253725711|gb|EES94440.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253727261|gb|EES95990.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
subsp. aureus TCH130]
gi|257273373|gb|EEV05475.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257276663|gb|EEV08114.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257280149|gb|EEV10736.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus 68-397]
gi|257283194|gb|EEV13326.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus E1410]
gi|257285871|gb|EEV15987.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257787933|gb|EEV26273.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9781]
gi|257840641|gb|EEV65100.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A9763]
gi|257842647|gb|EEV67069.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9719]
gi|257847847|gb|EEV71843.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A9299]
gi|257850465|gb|EEV74413.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A8115]
gi|257854100|gb|EEV77053.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A6300]
gi|257858176|gb|EEV81064.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A6224]
gi|257860705|gb|EEV83527.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A5948]
gi|257861991|gb|EEV84764.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
A5937]
gi|259160992|gb|EEW46011.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
930918-3]
gi|259163615|gb|EEW48171.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
D30]
gi|262074164|gb|ACY10137.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus ED98]
gi|269939743|emb|CBI48111.1| putative pyruvate formate-lyase activatingenzyme [Staphylococcus
aureus subsp. aureus TW20]
gi|282314921|gb|EFB45307.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282315904|gb|EFB46288.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus C427]
gi|282323173|gb|EFB53492.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus M899]
gi|282324150|gb|EFB54466.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282328457|gb|EFB58728.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330107|gb|EFB59628.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282591663|gb|EFB96734.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A10102]
gi|282593923|gb|EFB98913.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9765]
gi|282597266|gb|EFC02225.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus C160]
gi|282764069|gb|EFC04196.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A8117]
gi|283469463|emb|CAQ48674.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus ST398]
gi|283789255|gb|EFC28082.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285815951|gb|ADC36438.1| Pyruvate formate-lyase activating enzyme [Staphylococcus aureus
04-02981]
gi|290919373|gb|EFD96449.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus M1015]
gi|291097057|gb|EFE27315.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|291465674|gb|EFF08206.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|294824045|gb|EFG40470.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9754]
gi|294969571|gb|EFG45590.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A8819]
gi|295129213|gb|EFG58840.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296886201|gb|EFH25135.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297178350|gb|EFH37597.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A8796]
gi|297577547|gb|EFH96260.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|298693482|gb|ADI96704.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus ED133]
gi|300887445|gb|EFK82641.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|302331964|gb|ADL22157.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302750095|gb|ADL64272.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304341161|gb|EFM07080.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312436670|gb|ADQ75741.1| pyruvate formate-lyase activating enzyme [Staphylococcus aureus
subsp. aureus TCH60]
gi|312828748|emb|CBX33590.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130202|gb|EFT86190.1| [formate-C-acetyltransferase]-activating enzyme [Staphylococcus
aureus subsp. aureus CGS03]
gi|315194673|gb|EFU25062.1| [formate-C-acetyltransferase]-activating enzyme [Staphylococcus
aureus subsp. aureus CGS00]
gi|315198347|gb|EFU28677.1| [formate-C-acetyltransferase]-activating enzyme [Staphylococcus
aureus subsp. aureus CGS01]
gi|320141543|gb|EFW33384.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320142293|gb|EFW34108.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329312915|gb|AEB87328.1| Pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus T0131]
gi|329725818|gb|EGG62297.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus 21172]
gi|329731725|gb|EGG68085.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus 21189]
gi|329732667|gb|EGG69017.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus 21193]
Length = 251
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 34/183 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G GC +C +C
Sbjct: 9 VESLGTVDGPGLR-----YILFTQGC-----------LLRCLYCHNPDTWKISEPSREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD++ + I + G ++GGEPLLQ+ L L + G ++T+
Sbjct: 53 VDEMVNEILPYKPYFDASGGGVTVSGGEPLLQMPFLEKLFAELKENGVHTCLDTS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------Q 174
G + + + K + L ++ + L Q
Sbjct: 108 -AGCANDTKAFQRHFEELQKHTDLILLDIKHIDNDKHIRLTGKPNTHILNFARKLSDMKQ 166
Query: 175 PMD 177
P+
Sbjct: 167 PVW 169
>gi|325282230|ref|YP_004254772.1| glycyl-radical enzyme activating protein family [Odoribacter
splanchnicus DSM 20712]
gi|324314039|gb|ADY34592.1| glycyl-radical enzyme activating protein family [Odoribacter
splanchnicus DSM 20712]
Length = 260
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 47/140 (33%), Gaps = 43/140 (30%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK 61
K Y+I G G VF GC L CR+C GT
Sbjct: 9 KRYAIH------DGPGIRT---TVF--LKGCRL-----------HCRWCHNPESQAVGTV 46
Query: 62 GGR-------------------YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D 100
+ +VD+L + I + + E+ G +GGEPLLQ
Sbjct: 47 SMKQVRKLGDREFEEIRKVGYGISVDELVEEIAKDAVFFEESGGGVTFSGGEPLLQPVFL 106
Query: 101 VPLIQALNKRGFEIAVETNG 120
+ ++A R ++T G
Sbjct: 107 LECLKACKARRIHTCIDTAG 126
>gi|282915547|ref|ZP_06323319.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus D139]
gi|283767959|ref|ZP_06340874.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus H19]
gi|282320650|gb|EFB50988.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
subsp. aureus D139]
gi|283461838|gb|EFC08922.1| pyruvate formate-lyase-activating enzyme [Staphylococcus aureus
subsp. aureus H19]
Length = 251
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 34/183 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G GC +C +C
Sbjct: 9 VESLGTVDGPGLR-----YILFTQGC-----------LLRCLYCHNPDTWKISEPSREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD++ + I + G ++GGEPLLQ+ L L + G ++T+
Sbjct: 53 VDEMVNEILPYKPYFDASGGGVTVSGGEPLLQMPFLEKLFAELKENGVHTCLDTS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------Q 174
G + + + K + L ++ + L Q
Sbjct: 108 -AGCANDTKAFQRHFEELQKHTDLILLDIKHIDNDKHIRLTGKPNTHILNFARKLSDMKQ 166
Query: 175 PMD 177
P+
Sbjct: 167 PVW 169
>gi|34496868|ref|NP_901083.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum
ATCC 12472]
gi|34102723|gb|AAQ59088.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum
ATCC 12472]
Length = 259
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 23/140 (16%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F F SGC +C +C + G + +V+Q
Sbjct: 31 VDGPGMR------FVFFVSGC-----------QFRCLYCHNPDTW-KLHNGRQVSVEQAL 72
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ + ++GGEPL+Q + + + G A++T G +
Sbjct: 73 SEVAPYARFLKF-AGGVTISGGEPLMQHEFVGELFHEIKQRFGLHTALDTQGFLHERVSD 131
Query: 129 DWICVSPKAGCDLKIKGGQE 148
W D+K ++
Sbjct: 132 AWFDDVDLVMLDIKHSDPEK 151
>gi|323704570|ref|ZP_08116148.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323536032|gb|EGB25805.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 227
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 30/157 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C + E +
Sbjct: 19 ATVFV--SGCNF-----------VCPYC------HNSQLIKSKKPVKSEAEFLEYLDKRK 59
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVS 134
+TGGEP L I+ + GF ++TNG+ D+I +
Sbjct: 60 NLIDGVCITGGEPTLWDGLYDFIKDIKDLGFSAKLDTNGSRPDVIERLLNDDLVDYIAMD 119
Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDF 168
KA + L +K ++++ + +++ + I ++F
Sbjct: 120 VKAPKNKYGLFVKNNEDIERIVKSIDLIKNSGIDYEF 156
>gi|126466130|ref|YP_001041239.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
gi|126014953|gb|ABN70331.1| Radical SAM domain protein [Staphylothermus marinus F1]
Length = 363
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 40/204 (19%)
Query: 23 VAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF +GCN + Q+ + + + G Y+ +++ L E
Sbjct: 86 ACVFSISTAGCNFYCRFCQNWVLS--------QSRMDKIFGEPYDPEEVVKLAIE----- 132
Query: 82 EKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGTIEPP------QGIDWICV 133
+ T EP + + K G + TNG + P +D V
Sbjct: 133 -NGCQGISYTYNEPTVFYEFMYDTAKLAKKEGLFNTMVTNGYMTPEAIKKLGPYMDAATV 191
Query: 134 SPKAGCDL----KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
K G + K G + + +F + + + + P G E+ LA
Sbjct: 192 DFKGGGNKEFYRKFMGVLDPEPIFDSILAMKKEGWWIEITNLVV-PQYGDKEEDIRKLAR 250
Query: 190 SYCFQ------------NPKWRLS 201
+P ++L
Sbjct: 251 WIVENLGDETPFHLLRFHPDYKLQ 274
>gi|284998082|ref|YP_003419849.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
gi|284445977|gb|ADB87479.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
Length = 370
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 25/121 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVL 90
CNL +CR+C +V ++ +IE I +
Sbjct: 22 CNL-----------RCRYC---YVAAGIMGNNIMKLEDYMKIIENIISIKNKYNRIGITF 67
Query: 91 TGGEP-LLQVDVPLIQALNKRGF-EIAVETNGTIEP--------PQGIDWICVSPKAGCD 140
TGGEP L + +++ G IA+ TNGT+ G++WI VS +
Sbjct: 68 TGGEPTLHPDLIDMVRKAKDIGIDRIALVTNGTLMNKRFLDNLIDAGLEWIAVSIDSYLA 127
Query: 141 L 141
Sbjct: 128 E 128
>gi|261402990|ref|YP_003247214.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus vulcanius M7]
gi|261369983|gb|ACX72732.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus vulcanius M7]
Length = 241
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 38/189 (20%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWIT 80
+ + GCN +C +C + +++L I+ +
Sbjct: 19 KASAVIFLHGCN-----------MKCPYCHNLKHIL---QHKKEMTIEELFKDIDFLFAD 64
Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGI-------DWI 131
V++GGEP LQ D + + + K + ++TNGT D++
Sbjct: 65 A------IVISGGEPTLQKDAVIEIARYAKKNNLPVKIDTNGTHPEVIEELVKNDLVDYV 118
Query: 132 CVSPKAGCD------LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
V K D + G+E+K + +++ F R + P EE+
Sbjct: 119 AVDVKCRFDRYREFVKCKESGEEIKNKILNIIDICKSHDIFVECRTTFVP--RVMDEEDI 176
Query: 186 NLAISYCFQ 194
Sbjct: 177 KEIAKTVKN 185
>gi|306819962|ref|ZP_07453613.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551998|gb|EFM39938.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 305
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 9/147 (6%)
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
KG V+++ + I + L+GGE L+Q + L +A +G+ A+ET
Sbjct: 107 KGKTMTVEEVIKEARKDSIQYYRSDGGITLSGGEALVQGEFAKELFKACKAQGWHTAIET 166
Query: 119 NGT------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
G + +D + + K+ K + N I R
Sbjct: 167 EGYTNEEVIRDVMPYVDLVMLDIKSVNPKKHVEFTGVDNETILKNAKIIQEITNTVIRIP 226
Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWR 199
+ P EE T+ I + P +
Sbjct: 227 VIPEFNASREEITD-IIKFVKTLPNVK 252
>gi|301169235|emb|CBW28832.1| predicted pyruvate-formate lyase-activating enzyme [Haemophilus
influenzae 10810]
Length = 262
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRYNVD 68
F ++G+G R ++F GC L C +C + ++
Sbjct: 17 FSNVEGQGN---RSSIF--LQGCKLN-----------CLYCHNPETIPRYTENAKLVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + E R ++GGEP + VPL +AL +G ++++G E +
Sbjct: 61 YLYEQVMEAVPF----IRGVTVSGGEPTIHHKKLVPLFKALRSQGLTCYLDSSGFFEFDR 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 IRSLIDVTDKFLFDLKGEG 135
>gi|269122292|ref|YP_003310469.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
gi|268616170|gb|ACZ10538.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
Length = 304
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 46/257 (17%), Positives = 72/257 (28%), Gaps = 68/257 (26%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50
+ T G G VF +GCNL + S +C+ C
Sbjct: 14 YSTKDGPGLRT---TVF--LTGCNLRCKWCANPESMYPGKKIFYHSDRCKRCGLCVAAAN 68
Query: 51 -------------------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
D TKG ++L+ + + G
Sbjct: 69 NNSIALGESGCIINREACTNLAEMPDICPYDAYETKGTEMTAEELSSKLIRDMDFYKTSG 128
Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDW------ICVSPKA 137
+GGEP LQ + + L A++T I+ + + + KA
Sbjct: 129 GGVTFSGGEPCLQDEFVYETAKLLKNHNIHTALDTAAHIKKEKLAKILEVIDLVLLDIKA 188
Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAISYCFQNP 196
L + G +K N I D R + P L++ + +
Sbjct: 189 FDPLIHEKGTLVKNDLILKNAKMIADIKKDMLVRIVIIPGMNDDLDDIRKR-LEFVKSLG 247
Query: 197 KWRLSV-QT-----HKF 207
SV QT HKF
Sbjct: 248 N---SVKQTDILKYHKF 261
>gi|157737484|ref|YP_001490167.1| radical SAM domain-containing protein [Arcobacter butzleri RM4018]
gi|157699338|gb|ABV67498.1| radical SAM domain protein [Arcobacter butzleri RM4018]
Length = 234
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
+ +C +C D + ++ G+Y+ +++ D ++++ VL+GGE
Sbjct: 32 CIVWHISCNMRCSYCYNDNLVF--SRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEA 85
Query: 96 LLQVDVPLIQALNKRGFEIAVETNGTI 122
+ VP + + K G++I ++TNGT
Sbjct: 86 TIHNLVPFCKEIKKLGYKIKLDTNGTN 112
>gi|154496635|ref|ZP_02035331.1| hypothetical protein BACCAP_00927 [Bacteroides capillosus ATCC
29799]
gi|150274268|gb|EDN01359.1| hypothetical protein BACCAP_00927 [Bacteroides capillosus ATCC
29799]
Length = 242
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE--KEGR 86
GCNL C +C +G V + D++ E + +G
Sbjct: 25 LQGCNL-----------HCPWC----SNPEGMTFCGGTVCSVEDIVAEVLRSRPMFFDGG 69
Query: 87 YCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
LTGGE +Q L+ L+ G A+E+NGT
Sbjct: 70 GVTLTGGEAAMQPQAVKELLSVLSGHGIHTALESNGTAP 108
>gi|319939608|ref|ZP_08013967.1| pyruvate-formate lyase-activating enzyme [Streptococcus anginosus
1_2_62CV]
gi|319811197|gb|EFW07503.1| pyruvate-formate lyase-activating enzyme [Streptococcus anginosus
1_2_62CV]
Length = 265
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 24/119 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------KMRCQYCHNPDTWAMETNNSR-- 59
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ D+++E G+ ++GGE LLQ++ L + G ++T
Sbjct: 60 ERTVEDVLQEALRYRGFWGKKGGITVSGGEALLQINFVTALFTKAKELGIHCTLDTCAM 118
>gi|167745967|ref|ZP_02418094.1| hypothetical protein ANACAC_00662 [Anaerostipes caccae DSM 14662]
gi|167654482|gb|EDR98611.1| hypothetical protein ANACAC_00662 [Anaerostipes caccae DSM 14662]
Length = 308
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 52/206 (25%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50
F T G+G VF F GC L Q+ +C C
Sbjct: 16 FSTHDGDGIRT---TVF--FKGCPLSCVWCQNPEGISLRRRPLYFENRCIHCKICAAESV 70
Query: 51 --------DTDFVGIQGTK-----------------GGRYNVDQLADLIEEQWITGEKEG 85
DT F+ I + Y+V ++ + I + +
Sbjct: 71 SGGMKCRGDTMFMNIDAPEDWEHLIELCPSGALAMDSREYSVKEVMEEI-RKDTVFYRHD 129
Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
L+GGEPL Q + + +++ K G A+ET+ E + D KI
Sbjct: 130 GGVTLSGGEPLHQSEFALEILKQCKKEGIHTAIETSLYAEQEVLRKLLPYLDLIYADFKI 189
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFE 169
+ K N + I + E
Sbjct: 190 ADEERHKKYVGVPNQKIKENIKYLLE 215
>gi|20094510|ref|NP_614357.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
gi|19887619|gb|AAM02287.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
Length = 499
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIE 75
GC L G +R + C C F + +++Q+ ++++
Sbjct: 77 GCPLDCGLCPCHESTTALGIIDVTNRCNMNCPVC---FANAEAKGYVYEPSLEQIEEMLD 133
Query: 76 EQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
GGEPL++ V ++ A ++RGF + + TNG
Sbjct: 134 LLRSERPVPAPAVQFAGGEPLVREDIVEIVAAADERGFHVQIATNG 179
>gi|327399300|ref|YP_004340169.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Hippea maritima DSM 10411]
gi|327181929|gb|AEA34110.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Hippea maritima DSM 10411]
Length = 227
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G +A GCN +C +C + I GT R + ++ +E+
Sbjct: 15 GELAAVVFTLGCNF-----------RCPYCHNPEL-IDGT-SARIDEGEILSFLEK---- 57
Query: 81 GEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPP 125
+ + +TGGEP L D IQ L K G+++ ++TNGT
Sbjct: 58 RKGKLTAVSITGGEPTLHKDRLFKFIQKLKKLGYKVKLDTNGTNPEI 104
>gi|307544227|ref|YP_003896706.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Halomonas elongata DSM 2581]
gi|307216251|emb|CBV41521.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Halomonas elongata DSM 2581]
Length = 241
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 19/101 (18%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GC L +C +C R +E
Sbjct: 32 VF--LQGCPL-----------RCGYCHNPQ-----MLAPRQAEPSEWAEVEAFLERRRGL 73
Query: 85 GRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEP 124
V +GGEP L I+ ++ GF++ + T G
Sbjct: 74 LEAVVFSGGEPTLHADLAQAIERVHALGFKVGLHTAGIYPR 114
>gi|298481369|ref|ZP_06999562.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. D22]
gi|298272573|gb|EFI14141.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. D22]
Length = 205
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 17/137 (12%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ GEG F GC L +C++C YN +QL
Sbjct: 15 TIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPNGVWESYNCNQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + + GGEPLLQ + + + L + I VET+ + +
Sbjct: 59 EEVRKDELYFLASCGGVTFGGGEPLLQSEFIRQFRQLCGPEWRITVETSLNVPQQNVEEL 118
Query: 131 ICVSPKAGCDLKIKGGQ 147
I + D+K
Sbjct: 119 ISIIDNYIIDIKDMNND 135
>gi|289434689|ref|YP_003464561.1| pyruvate formate-lyase activating enzyme [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170933|emb|CBH27475.1| pyruvate formate-lyase activating enzyme [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313633309|gb|EFS00161.1| pyruvate formate-lyase 1-activating enzyme [Listeria seeligeri FSL
N1-067]
gi|313637905|gb|EFS03224.1| pyruvate formate-lyase 1-activating enzyme [Listeria seeligeri FSL
S4-171]
Length = 248
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 60/208 (28%), Gaps = 33/208 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 11 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + D + + G ++GGEPLLQ + K G +++ G
Sbjct: 53 SAQDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKKAGVHTTIDSCGGCF 112
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ + DL + +++ + N DF + QP+
Sbjct: 113 TREPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 172
Query: 179 -------PFLEENTNLAISYCFQNPKWR 199
E+ + P +
Sbjct: 173 HVLIPTKTDDPEDLTKLHEFIQTLPNVK 200
>gi|257125870|ref|YP_003163984.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Leptotrichia buccalis C-1013-b]
gi|257049809|gb|ACV38993.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Leptotrichia buccalis C-1013-b]
Length = 153
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 29/116 (25%)
Query: 12 TLQ------GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
++Q G G R+ VF F GCN+ + G Y
Sbjct: 7 SIQKNRYEDGPGI---RLTVF--FQGCNVKCKGCHNSEIQ------------DIRTGREY 49
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
V +L D I + + ++GGEPL+Q I ++++ FEIA+ T+
Sbjct: 50 EVKKLCDEIMSYNL----PVKKITISGGEPLMQKEALEEFINEMHEKDFEIALYTS 101
>gi|52549683|gb|AAU83532.1| pyruvate-formate lyase-activating enzyme [uncultured archaeon
GZfos30H9]
Length = 230
Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 18/100 (18%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCN C +C + + +E T +
Sbjct: 22 VF--TQGCNFK-----------CPYCHNPELVDPKLFAQPIPEADIFGFLE----TRRGK 64
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L + + + F + ++TNG+
Sbjct: 65 LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104
>gi|158522579|ref|YP_001530449.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfococcus oleovorans Hxd3]
gi|158511405|gb|ABW68372.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfococcus oleovorans Hxd3]
Length = 229
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+ + C +C + ++ + + E+ + +TGG
Sbjct: 18 VGCVVFTVGCNYHCPYCHNPDL-VRPKGPDFMSEADFFAFLSERTHFLDG----VSITGG 72
Query: 94 EPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
EP LQ + + GF + ++TNG++
Sbjct: 73 EPCLQPDLADFCAKIKEMGFLVKLDTNGSLP 103
>gi|331680073|ref|ZP_08380735.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli H591]
gi|331072399|gb|EGI43732.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli H591]
Length = 315
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 57/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + + DLKI + + V
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLVKLCDEVLFDLKIMDATQARDVVK 212
>gi|20808263|ref|NP_623434.1| pyruvate-formate lyase-activating enzyme [Thermoanaerobacter
tengcongensis MB4]
gi|254479441|ref|ZP_05092770.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Carboxydibrachium pacificum DSM 12653]
gi|20516862|gb|AAM25038.1| Pyruvate-formate lyase-activating enzyme [Thermoanaerobacter
tengcongensis MB4]
gi|214034626|gb|EEB75371.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Carboxydibrachium pacificum DSM 12653]
Length = 228
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ + + D ++++ E
Sbjct: 19 ATVFV--SGCNFK-----------CPYCHNSYLIQMREGIK--SEKEFFDYLKKRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
+TGGEP L I+ + FE+ ++TNG+
Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQ 102
>gi|296273199|ref|YP_003655830.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Arcobacter nitrofigilis DSM 7299]
gi|296097373|gb|ADG93323.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Arcobacter nitrofigilis DSM 7299]
Length = 225
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
+ G ++ F GCN +C++C + + +K G Y+++ + ++ +
Sbjct: 17 YIGYLSCVIWFKGCN-----------MRCQYCYNNDIVF--SKNGNYSLNDILTFLKNRV 63
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ VL+GGE L + + + + GF+I ++TNG
Sbjct: 64 GMLDA----VVLSGGEASLYDLTAICKKIKELGFKIKLDTNG 101
>gi|16800512|ref|NP_470780.1| pyruvate-formate lyase activating enzyme [Listeria innocua
Clip11262]
gi|16803447|ref|NP_464932.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
EGD-e]
gi|46907635|ref|YP_014024.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
str. 4b F2365]
gi|47092697|ref|ZP_00230483.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
str. 4b H7858]
gi|47095358|ref|ZP_00232968.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
str. 1/2a F6854]
gi|224499737|ref|ZP_03668086.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
Finland 1988]
gi|224501650|ref|ZP_03669957.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
FSL R2-561]
gi|226224008|ref|YP_002758115.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
Clip81459]
gi|254824533|ref|ZP_05229534.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL J1-194]
gi|254827668|ref|ZP_05232355.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL N3-165]
gi|254829834|ref|ZP_05234489.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
10403S]
gi|254852548|ref|ZP_05241896.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL R2-503]
gi|254898427|ref|ZP_05258351.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
J0161]
gi|254912082|ref|ZP_05262094.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
J2818]
gi|254932592|ref|ZP_05265951.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
HPB2262]
gi|254936409|ref|ZP_05268106.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
F6900]
gi|254992701|ref|ZP_05274891.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL J2-064]
gi|255029580|ref|ZP_05301531.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
LO28]
gi|255521842|ref|ZP_05389079.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL J1-175]
gi|284801793|ref|YP_003413658.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
08-5578]
gi|284994935|ref|YP_003416703.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
08-5923]
gi|300765761|ref|ZP_07075737.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
FSL N1-017]
gi|61229767|sp|P0A442|PFLA_LISMO RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|61229769|sp|P0A443|PFLA_LISIN RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|78099074|sp|Q71ZR3|PFLA_LISMF RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme
gi|4914622|emb|CAB43713.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes]
gi|16410836|emb|CAC99485.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
EGD-e]
gi|16413917|emb|CAC96675.1| pyruvate-formate lyase activating enzyme [Listeria innocua
Clip11262]
gi|46880903|gb|AAT04201.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016179|gb|EAL07102.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
str. 1/2a F6854]
gi|47018885|gb|EAL09632.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
str. 4b H7858]
gi|225876470|emb|CAS05179.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258600047|gb|EEW13372.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL N3-165]
gi|258605858|gb|EEW18466.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL R2-503]
gi|258609001|gb|EEW21609.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
F6900]
gi|284057355|gb|ADB68296.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
08-5578]
gi|284060402|gb|ADB71341.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
08-5923]
gi|293584151|gb|EFF96183.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
HPB2262]
gi|293590050|gb|EFF98384.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
J2818]
gi|293593772|gb|EFG01533.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL J1-194]
gi|300513536|gb|EFK40607.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
FSL N1-017]
gi|313618980|gb|EFR90817.1| pyruvate formate-lyase 1-activating enzyme [Listeria innocua FSL
S4-378]
gi|313623820|gb|EFR93946.1| pyruvate formate-lyase 1-activating enzyme [Listeria innocua FSL
J1-023]
gi|328466116|gb|EGF37283.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
1816]
gi|328475007|gb|EGF45799.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
220]
Length = 248
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 66/232 (28%), Gaps = 48/232 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 11 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + D + + G ++GGEPLLQ + G +++ G
Sbjct: 53 SAQDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVHTTIDSCGGCF 112
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ DL + +++ + N DF + QP+
Sbjct: 113 TRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 172
Query: 179 -------PFLEENTNLAISYCFQNPKWRLSVQT-----H-----KF--IGIR 211
E+ + P + Q H K+ +GIR
Sbjct: 173 HVLIPTKTDDPEDLTKLHEFIQTLPNVK---QVDVLPYHTMGVYKWKEMGIR 221
>gi|309778332|ref|ZP_07673258.1| putative pyruvate formate-lyase 1 activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
gi|308913898|gb|EFP59712.1| putative pyruvate formate-lyase 1 activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
Length = 306
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 62/211 (29%), Gaps = 57/211 (27%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRFC----- 50
F T GEG +F GC L Q+ +C C
Sbjct: 14 FATHDGEGIRT---TIF--LKGCPLRCAWCQNPEGLSPKPQLLYMKSKCMRCGSCVIAAK 68
Query: 51 --------DT---DFVGIQGTKG--------------GRYNVDQLADLIEEQWITGEKEG 85
D+ + + Y V++L I++ G
Sbjct: 69 HGGVSMKHDSIWLQRSASEDWQHILELCPTGALRYDAKEYTVEELFKEIQKDAPFFRYGG 128
Query: 86 RYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
L+GGEPLLQ D QA G +ET+ + P+ + DLK+
Sbjct: 129 -GVTLSGGEPLLQDDFACRLLQACKTEGIHTTMETSLYVSLPKLQRVLPYLDHIYADLKV 187
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQ 174
+ EN + + R+ LQ
Sbjct: 188 -----FDSAVHKAYTGVENAVILENIRYLLQ 213
>gi|257783945|ref|YP_003179162.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum
DSM 20469]
gi|257472452|gb|ACV50571.1| (Formate-C-acetyltransferase)-activating enzyme [Atopobium parvulum
DSM 20469]
Length = 294
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 40/203 (19%)
Query: 5 SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD--------------------- 41
+ +I F + G G AVF GCN+ +
Sbjct: 21 PVNKIIPFSLVDGPGSRT---AVF--LQGCNIRCAYCHNPETQVECISCQACVKPCPAHA 75
Query: 42 ---------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
++ C CD Q + + ++ + R +G
Sbjct: 76 LSMANGKVVWDNSICINCDNCIKVCQHKSTPKIELLSAREVADRCISNMPF-IRGITTSG 134
Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GE +L+ D L N G +++NGTI+ + D + +S D+K Q +
Sbjct: 135 GECMLRPDFLYELFTYCNAAGLSCLIDSNGTIDFTEYRDLLALSDGVMLDVKAWDDQWYE 194
Query: 151 LVFPQVNVSPENYIGFDFERFSL 173
+ + V + F E+ L
Sbjct: 195 HLTGENGVIVRKNLAFLAEQNKL 217
>gi|6580770|gb|AAF18276.1| pyruvate formate lyase activating enzyme [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 270
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 22/171 (12%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
EI + G G RF C + G C++C G +
Sbjct: 38 EIGGAVDGPG---------VRF--CAVLGGL-----RFACQYCHNPDSWF-LKNGRAVTL 80
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
++ + + ++ G ++GGEPL+Q + L++A G A++T G +
Sbjct: 81 AEMMEEVASYADFLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQ 140
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL 173
+ + D+K + K V Q ++ + + L
Sbjct: 141 ADDALLSNTDLVLLDIKAFNDKRYKALTGVELQPTLAFAKRLAALKKPVWL 191
>gi|296272134|ref|YP_003654765.1| molybdenum cofactor biosynthesis protein A [Arcobacter nitrofigilis
DSM 7299]
gi|296096309|gb|ADG92259.1| molybdenum cofactor biosynthesis protein A [Arcobacter nitrofigilis
DSM 7299]
Length = 320
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 24/170 (14%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C + F + + ++L + I+ + + + +TGGEPLL+
Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKE--ELLSYEELFEFIK---VCIDGGVKKVRITGGEPLLR 73
Query: 99 VDVPLIQAL---NKRGFEIAVETNGTIEPPQGI----------DWICVSPKAGCDLKIKG 145
+ + K ++A+ TNG + P + S K K+
Sbjct: 74 DGLDNFIRMISEYKNDIDLALTTNGYLLPKVAQKLADAGLKRLNISLDSLKPEVAQKVAQ 133
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK V + + + + PM G E + I +C
Sbjct: 134 KDILKTVLKGIEAADKAGLKIKINTV---PMQGINDSELCD-IIEFCKTR 179
>gi|302534965|ref|ZP_07287307.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C]
gi|302443860|gb|EFL15676.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C]
Length = 289
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 22/144 (15%)
Query: 13 LQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ G G F +GC L + + + G R + D +
Sbjct: 61 VDGPGTR------FVTFLAGCPLTCLYCHNPDTMR------------MRNGRRTSADAVI 102
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ G L+GGEPLLQ L + + G A++T+G +
Sbjct: 103 AEARKYTRFISASGGGATLSGGEPLLQPVFAGELLHRLKSDLGLHTALDTSGFLGSRASD 162
Query: 129 DWICVSPKAGCDLKIKGGQELKLV 152
+ D+K + V
Sbjct: 163 ALLRDVDLVLLDIKSWDRDTYRKV 186
>gi|24380068|ref|NP_722023.1| pyruvate-formate lyase activating enzyme [Streptococcus mutans
UA159]
gi|290579953|ref|YP_003484345.1| pyruvate-formate lyase activating enzyme [Streptococcus mutans
NN2025]
gi|6093702|sp|O68575|PFLA_STRMU RecName: Full=Pyruvate formate-lyase-activating enzyme;
Short=PFL-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme
gi|24378061|gb|AAN59329.1|AE014998_6 pyruvate-formate lyase activating enzyme [Streptococcus mutans
UA159]
gi|2952528|gb|AAC05773.1| pyruvate-formate lyase activating enzyme [Streptococcus mutans]
gi|3986294|dbj|BAA34998.1| PFL-activating enzyme [Streptococcus mutans]
gi|254996852|dbj|BAH87453.1| pyruvate-formate lyase activating enzyme [Streptococcus mutans
NN2025]
Length = 263
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC +C++C K R
Sbjct: 18 ESFGSVDGPGIR------FVVFMQGC-----------QMRCQYCHNPDTW--AMKNDRAT 58
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
D+ +E + + ++GGE LQ+D + L ++G ++T
Sbjct: 59 ERTAGDVFKEALRFKDFWGDTGGITVSGGEATLQMDFLIALFSLAKEKGIHTTLDTC 115
>gi|237716369|ref|ZP_04546850.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
gi|262407971|ref|ZP_06084519.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_1_22]
gi|294644254|ref|ZP_06722023.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
gi|294807964|ref|ZP_06766743.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
gi|229444016|gb|EEO49807.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. D1]
gi|262354779|gb|EEZ03871.1| pyruvate formate-lyase activating enzyme [Bacteroides sp. 2_1_22]
gi|292640418|gb|EFF58667.1| radical SAM domain protein [Bacteroides ovatus SD CC 2a]
gi|294444848|gb|EFG13536.1| radical SAM domain protein [Bacteroides xylanisolvens SD CC 1b]
Length = 205
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ GEG F GC L +C++C YN +QL
Sbjct: 15 TIDGEGVTTLVA-----FHGCPL-----------RCKYCLNPTSLQPNGVWESYNCNQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
+ + + + GGEPLLQ + + + L + I VET+
Sbjct: 59 EEVRKDELYFLASCGGVTFGGGEPLLQSEFIRQFRQLCGPEWRITVETS 107
>gi|288561221|ref|YP_003424707.1| pyruvate formate-lyase-activating enzyme PflA2 [Methanobrevibacter
ruminantium M1]
gi|288543931|gb|ADC47815.1| pyruvate formate-lyase-activating enzyme PflA2 [Methanobrevibacter
ruminantium M1]
Length = 447
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 25/127 (19%)
Query: 1 MKLYSIK--EI----FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
MK+Y I I T G+G ++ GC L +C +C F
Sbjct: 1 MKMYKINVSNISRLRTYT-DGDGVSTLIGSM-----GCPL-----------RCAYCFNPF 43
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
+ Y VD+L + ++ I G V GGEPLL I+ G+
Sbjct: 44 SWDGSLEPKTYAVDELYEEVKRDNIYFLSTGGGLVFGGGEPLLYHEFIKEFIKKYKSTGW 103
Query: 113 EIAVETN 119
+ +ET+
Sbjct: 104 KFTLETS 110
>gi|283768229|ref|ZP_06341142.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bulleidia extructa W1219]
gi|283105106|gb|EFC06477.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bulleidia extructa W1219]
Length = 373
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
SGCNL C FC+ + + + D ++ T
Sbjct: 174 IYVSGCNLK-----------CPFCNQKDLVFLPQEANFLETQDILDDLK----TRVGFLE 218
Query: 87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
++GGEP Q +P + + K G I +ETNGT
Sbjct: 219 GVCISGGEPCQQEALIPFLVEIKKLGLAIKLETNGTFPH 257
>gi|4106382|gb|AAD02826.1| pyruvate formate-lyase 1 activating enzyme [Pasteurella multocida]
Length = 246
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 21/123 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C++C G
Sbjct: 11 ESCGTVDGPGIR------FILFMQGC-----------LMRCQYCHNRDTW-DLHAGKEIT 52
Query: 67 VDQLADLIE--EQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
V++L + ++ RYC+ + A K G ++TNG +
Sbjct: 53 VEELMKEVVTYRHFMNRIWWRRYCLWWRRVLQAEFVRDWFSACKKEGIHTCLDTNGFVRN 112
Query: 125 PQG 127
Sbjct: 113 YDH 115
>gi|113473995|ref|YP_720056.1| hypothetical protein Tery_0075 [Trichodesmium erythraeum IMS101]
gi|110165043|gb|ABG49583.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 91
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 140 DLKIKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
E+KLV ++ + + + LQP + L +
Sbjct: 18 PSMWTRASEIKLVIETGKELEFYSKILLVKNQTPVFLQPESY-NRDFTLPLVQKLLREYS 76
Query: 197 KWRLSVQTHKFIGIR 211
RLS+Q HK++GI+
Sbjct: 77 HCRLSIQLHKYLGIK 91
>gi|306824472|ref|ZP_07457818.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304433259|gb|EFM36229.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 264
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D++ E + ++GGE LLQ+D + L ++G ++T
Sbjct: 60 ERTVDDVLTEALRYRGFWGDKGGITVSGGEALLQIDFLIALFTKAKEKGIHCTLDTC 116
>gi|289578845|ref|YP_003477472.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter italicus Ab9]
gi|289528558|gb|ADD02910.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter italicus Ab9]
Length = 228
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 20/103 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ G + + D ++++ E
Sbjct: 19 ATVFI--SGCNFK-----------CPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
+TGGEP L I+ F + ++TNG+
Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNTKDLNFSVKLDTNGSRPQ 102
>gi|163751863|ref|ZP_02159078.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica
KT99]
gi|161328279|gb|EDP99441.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica
KT99]
Length = 220
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GC +C++C G V +L + I E G
Sbjct: 2 QGC-----------LMRCQYCHNRDTW-DLHGGQEVEVKELMEQIISYRPFLEASGGGVT 49
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+GGE +LQ + L + G ++TNG
Sbjct: 50 ASGGEAILQAEFVSALFAECKQEGIHTCLDTNGF 83
>gi|330503846|ref|YP_004380715.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
mendocina NK-01]
gi|328918132|gb|AEB58963.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
mendocina NK-01]
Length = 384
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 53/172 (30%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G + + IE E +
Sbjct: 18 PLWLLAELTYRCPLQCPYCSNPLDF--AQQGAELSTAEW---IEVFRQARELGAAQLGFS 72
Query: 92 GGEPL-LQVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL Q LI A G+ + T+G G+D I +S +A +
Sbjct: 73 GGEPLARQDLAELIAAARGLGYYTNLITSGIGLTEARIAEFAEAGLDHIQISFQAADEEV 132
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q ++ + L + +N I C +
Sbjct: 133 NNLLAGSKKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIELCLE 183
>gi|309704376|emb|CBJ03725.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli ETEC
H10407]
Length = 292
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPANKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRVMEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 234
>gi|195978911|ref|YP_002124155.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975616|gb|ACG63142.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 289
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 54/171 (31%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---------GIQGTK--- 61
G G VF GC L +C +C G K
Sbjct: 49 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKTLPEKMLSTDGLKTEI 92
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 93 VGQEKTVEEIIAEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAEGLHTAIET 152
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + FE
Sbjct: 153 TAFAKHEQFAELINYVDFIYTDLKHYNRLKHTKVTGVRNDLIIKNIHYAFE 203
>gi|269120389|ref|YP_003308566.1| (formate-C-acetyltransferase)-activating enzyme [Sebaldella
termitidis ATCC 33386]
gi|268614267|gb|ACZ08635.1| (Formate-C-acetyltransferase)-activating enzyme [Sebaldella
termitidis ATCC 33386]
Length = 279
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 42/245 (17%), Positives = 65/245 (26%), Gaps = 60/245 (24%)
Query: 3 LYSI-KEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD------------------ 41
+Y++ I F + G G AVF F GCN +
Sbjct: 1 MYAVVNNIIKFSNVDGPGNRM---AVF--FQGCNFRCIYCHNPETIHLCNNCGECVKVCP 55
Query: 42 ------------RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
C CD K +Y V L E+ I +
Sbjct: 56 VGALTREDGIVKWDKKICVDCDECIKTCRFFSSPKTEKYTVADLLKETEKVKIF----IQ 111
Query: 87 YCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGID--WICVSPKAGCDLK 142
++GGE L + + K + V+TNG I+ ++ V+ K D+K
Sbjct: 112 GVTVSGGEATLNAHFITEFFKEVKKMNLSVFVDTNGGIDLSLEEYKEFVEVTDKFMLDIK 171
Query: 143 IKGGQELKL--------VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
E K V + E ++ +E
Sbjct: 172 AWDSTEHKELTGADNEIVLKNLRFLLEKNKMYEVRTVV---NSMINAKETIMKTAEILKD 228
Query: 195 NPKWR 199
P R
Sbjct: 229 YPDVR 233
>gi|225871377|ref|YP_002747324.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
equi 4047]
gi|225700781|emb|CAW95452.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
equi subsp. equi 4047]
Length = 257
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 54/171 (31%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---------GIQGTK--- 61
G G VF GC L +C +C G K
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKTLPEKMLSTDGLKTEI 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 61 VGQEKTVEEIIAEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAEGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + FE
Sbjct: 121 TAFAKHEQFAELINYVDFIYTDLKHYNRLKHTKVTGVRNDLIIKNIHYAFE 171
>gi|315637210|ref|ZP_07892430.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Arcobacter butzleri JV22]
gi|315478482|gb|EFU69195.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Arcobacter butzleri JV22]
Length = 225
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
+ +C +C D + ++ G+Y+ +++ D ++++ VL+GGE
Sbjct: 23 CIVWHISCNMRCSYCYNDNLVF--SRIGKYSHNEVLDFLKKRVTLLSA----VVLSGGEA 76
Query: 96 LLQVDVPLIQALNKRGFEIAVETNGTI 122
+ VP + + K G++I ++TNGT
Sbjct: 77 TIHNLVPFCKEIKKLGYKIKLDTNGTN 103
>gi|315611872|ref|ZP_07886791.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
ATCC 49296]
gi|315316050|gb|EFU64083.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
ATCC 49296]
Length = 264
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D++ E + ++GGE LLQ+D + L ++G ++T
Sbjct: 60 ERTVDDVLTEALRYRGFWGDKGGITVSGGEALLQIDFLIALFTKAKEKGIHCTLDTC 116
>gi|297545065|ref|YP_003677367.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842840|gb|ADH61356.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 228
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ G + + D ++++ E
Sbjct: 19 ATVFV--SGCNFK-----------CPYCHNSYLIQIRE--GMRSEKEFFDYLKKRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVS 134
+TGGEP L I+ + F + ++TNG+ D+I +
Sbjct: 64 G----VCITGGEPTLWKGLEDFIKDIKDLNFSVKLDTNGSRPQVLENLIDEGLLDYIAMD 119
Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDF 168
KA + + +K +++ V V + + I ++F
Sbjct: 120 IKAPIEKYGIFLKNKKDIDNVQKSVEIIKNSDIDYEF 156
>gi|317407424|gb|EFV87386.1| ribonucleotide reductase activating protein [Achromobacter
xylosoxidans C54]
Length = 254
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G A +F +GC +C +C + + RY+
Sbjct: 45 FSTVDWPGTLA--AVIFI--AGCP-----------WRCHYCHNPELQT---RNARYDWRD 86
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ ++ + + V +GGEPL + +P +I+ + G+ I + T G
Sbjct: 87 VRAFLDNRQGLLDA----VVFSGGEPLSEPRLPSMIREARRMGYRIGLHTAGIYP 137
>gi|170769684|ref|ZP_02904137.1| glycyl-radical enzyme activating protein family [Escherichia
albertii TW07627]
gi|170121492|gb|EDS90423.1| glycyl-radical enzyme activating protein family [Escherichia
albertii TW07627]
Length = 292
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R ++C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRRESKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDPNQARQVVK 189
>gi|15597185|ref|NP_250679.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
aeruginosa PAO1]
gi|116049940|ref|YP_791250.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218892053|ref|YP_002440920.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
aeruginosa LESB58]
gi|254235073|ref|ZP_04928396.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa C3719]
gi|254240426|ref|ZP_04933748.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa 2192]
gi|32363413|sp|Q9I2C0|PQQE_PSEAE RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|122259054|sp|Q02LD6|PQQE_PSEAB RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|226704996|sp|B7VAB6|PQQE_PSEA8 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|9947990|gb|AAG05377.1|AE004625_7 pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa PAO1]
gi|115585161|gb|ABJ11176.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126167004|gb|EAZ52515.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa C3719]
gi|126193804|gb|EAZ57867.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa 2192]
gi|218772279|emb|CAW28061.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa LESB58]
Length = 381
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G + + IE E +
Sbjct: 15 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEW---IEVFRQARELGAAQLGFS 69
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPLL Q LI+A GF + T+G G+D + +S +A +
Sbjct: 70 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQISFQAADEEV 129
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ F Q ++ + L + +N I C +
Sbjct: 130 NNLLAGSRKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIQLCIE 180
>gi|49088778|gb|AAT51605.1| PA1989 [synthetic construct]
Length = 382
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G + + IE E +
Sbjct: 15 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEW---IEVFRQARELGAAQLGFS 69
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPLL Q LI+A GF + T+G G+D + +S +A +
Sbjct: 70 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQISFQAADEEV 129
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ F Q ++ + L + +N I C +
Sbjct: 130 NNLLAGSRKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIQLCIE 180
>gi|293364736|ref|ZP_06611453.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC
35037]
gi|306830171|ref|ZP_07463355.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC
6249]
gi|307702983|ref|ZP_07639930.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis
ATCC 35037]
gi|322375831|ref|ZP_08050342.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300]
gi|331265653|ref|YP_004325283.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5]
gi|291316186|gb|EFE56622.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC
35037]
gi|304427697|gb|EFM30793.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC
6249]
gi|307623376|gb|EFO02366.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis
ATCC 35037]
gi|321279099|gb|EFX56141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300]
gi|326682325|emb|CBY99942.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5]
Length = 264
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC+ +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGCH-----------MRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D++ E + ++GGE LLQ+D + L ++G ++T
Sbjct: 60 ERTVDDVLTEALRYRGFWGDKGGITVSGGEALLQIDFLIALFTKAKEKGIHCTLDTC 116
>gi|154509285|ref|ZP_02044927.1| hypothetical protein ACTODO_01810 [Actinomyces odontolyticus ATCC
17982]
gi|293189709|ref|ZP_06608425.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces
odontolyticus F0309]
gi|153798919|gb|EDN81339.1| hypothetical protein ACTODO_01810 [Actinomyces odontolyticus ATCC
17982]
gi|292821299|gb|EFF80242.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces
odontolyticus F0309]
Length = 292
Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 19/121 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L +C + G + +L
Sbjct: 62 VDGPGTRM---TVF--LNGCPLRCL-----------YCHNPDTFLM-KDGAPVSDTELLS 104
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNGTIEPPQGIDW 130
I L+GGE L+Q + + G ++T+G + +
Sbjct: 105 RIARYRRIFRTTQGGITLSGGEVLMQPQFAKRILMGAKEMGVHTCIDTSGFLGANCDDEM 164
Query: 131 I 131
+
Sbjct: 165 L 165
>gi|107101417|ref|ZP_01365335.1| hypothetical protein PaerPA_01002457 [Pseudomonas aeruginosa PACS2]
gi|313111199|ref|ZP_07797021.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa 39016]
gi|310883523|gb|EFQ42117.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
aeruginosa 39016]
Length = 370
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G + + IE E +
Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEW---IEVFRQARELGAAQLGFS 58
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPLL Q LI+A GF + T+G G+D + +S +A +
Sbjct: 59 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQISFQAADEEV 118
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ F Q ++ + L + +N I C +
Sbjct: 119 NNLLAGSRKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIQLCIE 169
>gi|281357638|ref|ZP_06244125.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
gi|281315895|gb|EFA99921.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
Length = 482
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
F R CN +C +C + G T+ + + +I + E
Sbjct: 30 FNRL--CN-----------YRCPYC---YAGDPETELPEMSSELADSVIRQ---AAELGA 70
Query: 86 RYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
R V+ GGEPLL ++ I+ +N G + TNG
Sbjct: 71 RKVVILGGEPLLYPELERKIELVNSLGMGAEIFTNG 106
>gi|315604652|ref|ZP_07879715.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
taxon 180 str. F0310]
gi|315313664|gb|EFU61718.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
taxon 180 str. F0310]
Length = 292
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 19/142 (13%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L +C + G + +L
Sbjct: 62 VDGPGTRM---TVF--LNGCPLRCL-----------YCHNPDTFLM-KDGAPVSDTELLS 104
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA--LNKRGFEIAVETNGTIEPPQGIDW 130
I L+GGE L+Q + G ++T+G + +
Sbjct: 105 RIARYRRIFRTTKGGITLSGGEVLMQPHFAKRIILGAKEMGVHTCIDTSGYLGANCDDEM 164
Query: 131 ICVSPKAGCDLKIKGGQELKLV 152
+ D+K + K V
Sbjct: 165 LDAIDLVLLDVKSGNEETYKRV 186
>gi|268323802|emb|CBH37390.1| conserved hypothetical protein, radical SAM superfamily [uncultured
archaeon]
Length = 230
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 18/100 (18%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCN C +C + + I T +
Sbjct: 22 VF--TQGCNFK-----------CPYCHNP----ELVDPKLFAQPIPEADIFGFLQTRRGK 64
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L + + + F + ++TNG+
Sbjct: 65 LDAVEITGGEPTLQPDLIDFTKKIKSLNFLVKLDTNGSNP 104
>gi|19746938|ref|NP_608074.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes MGAS8232]
gi|139474512|ref|YP_001129228.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes str. Manfredo]
gi|19749188|gb|AAL98573.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes MGAS8232]
gi|134272759|emb|CAM31032.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes str. Manfredo]
Length = 257
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 61 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 121 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 171
>gi|124266885|ref|YP_001020889.1| putative ribonucleotide reductase activating transmembrane protein
[Methylibium petroleiphilum PM1]
gi|124259660|gb|ABM94654.1| putative ribonucleotide reductase activating transmembrane protein
[Methylibium petroleiphilum PM1]
Length = 223
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 36/204 (17%), Positives = 60/204 (29%), Gaps = 44/204 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF GC + +C +C +
Sbjct: 22 FTSIDYPGALA--AVVFV--QGC-----------AWRCVYCHNPQL----QGRQPAPGIP 62
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEP---- 124
+ + T V +GGEP L +P A+ GF + T G
Sbjct: 63 HWAEVHDWLRTRRGLLDAVVFSGGEPTLDPALPAALDAVRALGFRTGLHTAGMAPRRLQA 122
Query: 125 -PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEE 183
+DW+ + KA + V + LQ G ++
Sbjct: 123 VLPSLDWVGLDIKAPLHDGGAQHDRITGVHGAAGAVARSLA------LLLQ--SGMAVQL 174
Query: 184 NTNLAISYCFQNPKWRLS---VQT 204
T + +P+W +S +QT
Sbjct: 175 RTTV-------HPQW-ISAEELQT 190
>gi|225869370|ref|YP_002745318.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
zooepidemicus]
gi|225702646|emb|CAX00721.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
equi subsp. zooepidemicus]
Length = 257
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 54/171 (31%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV---------GIQGTK--- 61
G G VF GC L +C +C G K
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKTLPEKMLSTDGLKTEI 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 61 VGQEKTVEEIIAEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAEGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + FE
Sbjct: 121 TAFAKHEQFAELINYVDFIYTDLKHYNRLKHTKVTGVRNDLIIKNIHYAFE 171
>gi|218281753|ref|ZP_03488109.1| hypothetical protein EUBIFOR_00677 [Eubacterium biforme DSM 3989]
gi|218217204|gb|EEC90742.1| hypothetical protein EUBIFOR_00677 [Eubacterium biforme DSM 3989]
Length = 241
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 60/195 (30%), Gaps = 42/195 (21%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F + G G R +F GC+ +C+FC K NV
Sbjct: 9 ETFGLVDGPGV---RYVIFM--QGCH-----------MRCKFCHNADTW--KVKEPDQNV 50
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+ + KE ++GGEPLLQ+D + L K G ++T G
Sbjct: 51 ETVLKKALRYRPY-WKENGGITVSGGEPLLQIDFLIELFTQAKKEGVHTTLDTCGQ---- 105
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+ + K + ++ + D + + G +
Sbjct: 106 ------------PFTFEEPFFSKFKQLMQVTDLVLLDIKHIDEKAHK--ELTGHTNQNIL 151
Query: 186 NLAISYC--FQNPKW 198
LA Y Q P W
Sbjct: 152 ELA-KYLSDIQKPVW 165
>gi|56808089|ref|ZP_00365882.1| COG1180: Pyruvate-formate lyase-activating enzyme [Streptococcus
pyogenes M49 591]
Length = 276
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 36 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 79
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 80 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 139
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 140 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 190
>gi|313898792|ref|ZP_07832326.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
sp. HGF2]
gi|312956374|gb|EFR38008.1| putative pyruvate formate-lyase 1-activating enzyme [Clostridium
sp. HGF2]
Length = 298
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 57/208 (27%), Gaps = 51/208 (24%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC------ 50
E F T G G +F GC L+ + + +C C
Sbjct: 8 ERFATHDGPGIRT---TLF--LKGCPLFCPWCANPETQSVKSTMFHNAVRCVGCRLCERA 62
Query: 51 --DTDFVGIQGT-------------------------KGGRYNVDQLADLIEEQWITGEK 83
QG +G ++ + + E
Sbjct: 63 CPHQAITFAQGNFTYREDRCQRCGACERVCLQDAIAFQGKEMTLEAIMAELCRDRDYYEN 122
Query: 84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
G +GGEP +Q L++A + GF AVET G I + + D
Sbjct: 123 SGGGITFSGGEPFVQQEALWELLRACKQEGFHTAVETTGNYSRDLLIRMMPLIDLFLFDF 182
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFE 169
K L+ V + + + +
Sbjct: 183 KHPDDAILRTVTGADGALIKENLRYLLK 210
>gi|296876029|ref|ZP_06900085.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 15912]
gi|296432940|gb|EFH18731.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 15912]
Length = 264
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------QMRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D++EE + ++GGE LLQ+D + L + G ++T
Sbjct: 60 ERTVDDVLEEALRYRGFWGQKGGITVSGGEALLQIDFLIALFTKAQELGIHCTLDTC 116
>gi|116754318|ref|YP_843436.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanosaeta thermophila PT]
gi|116665769|gb|ABK14796.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanosaeta thermophila PT]
Length = 247
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 42/210 (20%), Positives = 69/210 (32%), Gaps = 55/210 (26%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR++ VF R GC +C FC + ++++LI +
Sbjct: 18 GRLSAVVFLR--GCPF-----------RCPFC------QNAELQSGWTPVEISELINHLF 58
Query: 79 ITGEKEGRY------------CVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEP 124
VL+GGEPL Q D + + ++ RG ++ +ETNG
Sbjct: 59 PRRGAGQSILHEFSGSVCIDSVVLSGGEPLAQSDAVVAIAREVDVRGLDLGIETNGYYPE 118
Query: 125 PQGI-------DWICVSPKAGCDLKIK-----GGQELKLVFPQVNVSPENYIGFDFERFS 172
+ D + + KA + L V ++V E+ I F+ R +
Sbjct: 119 SLEVLISEEYLDMVFLDIKAAPREDMYQRATGIRDALPRVLRSLDVIVEHGIPFEI-RIT 177
Query: 173 LQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
+ P E WRL
Sbjct: 178 VFPGMPSEDE--LKEVSDLL-----WRLQP 200
>gi|67923596|ref|ZP_00517068.1| Radical SAM [Crocosphaera watsonii WH 8501]
gi|67854566|gb|EAM49853.1| Radical SAM [Crocosphaera watsonii WH 8501]
Length = 248
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 26 FCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
F F+ GC L C D V G +VD+L IE+ +
Sbjct: 27 FIVFTKGCPLRCLY--------CHNADCRHV----ENGKLVSVDELISEIEKYQSYFKFS 74
Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
G ++GGEPL+Q + + + ++ G A++T+G
Sbjct: 75 GGGVTVSGGEPLMQPEFVKAIFEECHRLGIHTALDTSGY 113
>gi|3127055|gb|AAC38452.1| TutE [Thauera aromatica]
Length = 375
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 60/170 (35%)
Query: 6 IKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA----------------- 45
+ EI F +LQ G G VF GC L + +
Sbjct: 49 VTEIQRF-SLQDGPGFRT---TVF--LKGCPLRCPWCHNPETQKVGKEYYYNRDRCVSCG 102
Query: 46 QC-RFCDT-------------------------------DFVGIQGTKGGRYNVDQLADL 73
+C C T G + + G +D++
Sbjct: 103 RCATVCPTGASQLLDGPGASQVLKLDRSKCINCMRCVAVCLTGSRDSVGMEMTLDEILRE 162
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ G ++GG+PL + L + + +RG +A+ET+
Sbjct: 163 VLSDEPFYRNSGGGVTISGGDPLFHPAFTLELARKIKERGVHVAIETSCF 212
>gi|50915095|ref|YP_061067.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10394]
gi|71904398|ref|YP_281201.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS6180]
gi|94995239|ref|YP_603337.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10750]
gi|50904169|gb|AAT87884.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10394]
gi|71803493|gb|AAX72846.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS6180]
gi|94548747|gb|ABF38793.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10750]
Length = 276
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 36 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 79
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 80 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 139
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 140 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 190
>gi|256811264|ref|YP_003128633.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
gi|256794464|gb|ACV25133.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
Length = 229
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 25/146 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN C++C + Y+V++L + I E + ++
Sbjct: 18 GCNFK-----------CKYC-----FFKPLSCKNYSVEELLNKILE--VNENYNINKILI 59
Query: 91 TGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQ----GIDWICVSPKAGCDLKIKG 145
GGEP LQ D+P L GF I + TNG +D I + KA + K
Sbjct: 60 AGGEPTLQKDLPKLTNILKDEGFYIMLSTNGYYLKDMVDKLEVDEIHIDLKAYTEKKHIY 119
Query: 146 GQEL--KLVFPQVNVSPENYIGFDFE 169
K V ++ +N F+F+
Sbjct: 120 LTSFSNKKVLDCISYIGDNRDKFNFK 145
>gi|21911291|ref|NP_665559.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes MGAS315]
gi|209560179|ref|YP_002286651.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
NZ131]
gi|21905505|gb|AAM80362.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes MGAS315]
gi|209541380|gb|ACI61956.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
NZ131]
Length = 257
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 61 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 121 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 171
>gi|315282287|ref|ZP_07870729.1| pyruvate formate-lyase 1-activating enzyme [Listeria marthii FSL
S4-120]
gi|313614070|gb|EFR87772.1| pyruvate formate-lyase 1-activating enzyme [Listeria marthii FSL
S4-120]
Length = 248
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 58/208 (27%), Gaps = 33/208 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 11 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + D + + G ++GGEPLLQ + G +++ G
Sbjct: 53 SAKDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVHTTIDSCGGCF 112
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ DL + +++ + N DF + QP+
Sbjct: 113 TRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 172
Query: 179 -------PFLEENTNLAISYCFQNPKWR 199
E+ + P +
Sbjct: 173 HVLIPTKTDDPEDLTKLHEFIQTLPNVK 200
>gi|227498357|ref|ZP_03928507.1| glycerol dehydratase activator [Acidaminococcus sp. D21]
gi|226903819|gb|EEH89737.1| glycerol dehydratase activator [Acidaminococcus sp. D21]
Length = 258
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 27/164 (16%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD-------FVGIQGTK--GGR 64
G+G VF GC L +C++C T + G+K G
Sbjct: 20 DGDGMRT---VVF--LKGCPL-----------RCQWCSTPESQAFQVETTVDGSKSYGTE 63
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
V + + + G L+GGE L Q D + L++A + G AVET+
Sbjct: 64 MTVTDVMKEVRKDTAFYFISGGGMTLSGGELLAQPDFSLALLKAASMEGISTAVETSFFG 123
Query: 123 EPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+ + DLK K N + I F
Sbjct: 124 KEETIAAMVPYVDTFYVDLKAVTPSLHKKYCGVDNRIILHNIKF 167
>gi|315303093|ref|ZP_07873789.1| pyruvate formate-lyase 1-activating enzyme [Listeria ivanovii FSL
F6-596]
gi|313628535|gb|EFR96972.1| pyruvate formate-lyase 1-activating enzyme [Listeria ivanovii FSL
F6-596]
Length = 248
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 59/208 (28%), Gaps = 33/208 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 11 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + D + + G ++GGEPLLQ + K G +++ G
Sbjct: 53 SAQDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKKAGVHTTIDSCGGCF 112
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ DL + +++ + N DF + QP+
Sbjct: 113 TRDPEFIEKLDRLMKVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 172
Query: 179 -------PFLEENTNLAISYCFQNPKWR 199
E+ + P +
Sbjct: 173 HVLIPTKTDDPEDLTKLHEFIQTLPNVK 200
>gi|323974240|gb|EGB69370.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli TW10509]
Length = 292
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRASGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPTSKLLPLAKLCDEVLFDLKIMDVTQARDVVK 189
>gi|28896665|ref|NP_803015.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
SSI-1]
gi|28811919|dbj|BAC64848.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes SSI-1]
Length = 268
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 28 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 71
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 72 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 131
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 132 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 182
>gi|251781600|ref|YP_002995901.1| pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390228|dbj|BAH80687.1| pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|323126393|gb|ADX23690.1| Pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 257
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 61 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 121 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 171
>gi|241663378|ref|YP_002981738.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12D]
gi|240865405|gb|ACS63066.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia pickettii 12D]
Length = 237
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 28/139 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + + + +
Sbjct: 28 FSSVDWPGQLA--AVVFV--AGCP-----------WRCHYCHNPHLQTRT---RTLDWND 69
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE----- 123
+ ++ + + V +GGEPL + +P LI+ + G++I + T G
Sbjct: 70 VFAFLQRRTGLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLTD 125
Query: 124 PPQGIDWICVSPKAGCDLK 142
+DW+ + K
Sbjct: 126 VLPQVDWVGLDIKTSAPHY 144
>gi|322390044|ref|ZP_08063580.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 903]
gi|321143251|gb|EFX38693.1| pyruvate formate-lyase activating enzyme [Streptococcus
parasanguinis ATCC 903]
Length = 264
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------QMRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D++EE + ++GGE LLQ+D + L + G ++T
Sbjct: 60 ERTVDDVLEEALRYRGFWGQKGGITVSGGEALLQIDFLIALFTKAQELGIHCTLDTC 116
>gi|15675825|ref|NP_269999.1| putative pyruvate formate-lyase activating protein [Streptococcus
pyogenes M1 GAS]
gi|71911562|ref|YP_283112.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS5005]
gi|13623054|gb|AAK34720.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pyogenes M1 GAS]
gi|71854344|gb|AAZ52367.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS5005]
Length = 257
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 61 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + + DLK + V N I + F+
Sbjct: 121 TAFAKHEQFVTLVDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 171
>gi|297584282|ref|YP_003700062.1| pyruvate formate-lyase activating enzyme [Bacillus selenitireducens
MLS10]
gi|297142739|gb|ADH99496.1| pyruvate formate-lyase activating enzyme [Bacillus selenitireducens
MLS10]
Length = 249
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 19/117 (16%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G R +F GC +C++C G +V +L +
Sbjct: 14 VDGPGI---RYMIF--TQGC-----------LLRCQYCHNPDSW-DREAGTDMSVQELIE 56
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQG 127
I++ G ++GGEPLLQ L L G A++++G Q
Sbjct: 57 DIKKYIPYMNASGGGVTVSGGEPLLQVPFLTALFTELKSLGVHTAIDSSGGCYSNQD 113
>gi|217964446|ref|YP_002350124.1| pyruvate formate-lyase 1-activating enzyme [Listeria monocytogenes
HCC23]
gi|290894462|ref|ZP_06557420.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL J2-071]
gi|217333716|gb|ACK39510.1| pyruvate formate-lyase 1-activating enzyme [Listeria monocytogenes
HCC23]
gi|290555977|gb|EFD89533.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL J2-071]
gi|307570989|emb|CAR84168.1| pyruvate formate-lyase activating enzyme [Listeria monocytogenes
L99]
Length = 248
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 66/232 (28%), Gaps = 48/232 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 11 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + + + + G ++GGEPLLQ + G +++ G
Sbjct: 53 SAQDVFNEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVHTTIDSCGGCF 112
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ DL + +++ + N DF + QP+
Sbjct: 113 TRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 172
Query: 179 -------PFLEENTNLAISYCFQNPKWRLSVQT-----H-----KF--IGIR 211
E+ + P + Q H K+ +GIR
Sbjct: 173 HVLIPTKTDDPEDLTKLHEFIQTLPNVK---QVDVLPYHTMGVYKWKEMGIR 221
>gi|255024122|ref|ZP_05296108.1| pyruvate formate-lyase 1-activating enzyme [Listeria monocytogenes
FSL J1-208]
Length = 244
Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 66/232 (28%), Gaps = 48/232 (20%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 7 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 48
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + + + + G ++GGEPLLQ + G +++ G
Sbjct: 49 SAQDVFNEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVHTTIDSCGGCF 108
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ DL + +++ + N DF + QP+
Sbjct: 109 TRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 168
Query: 179 -------PFLEENTNLAISYCFQNPKWRLSVQT-----H-----KF--IGIR 211
E+ + P + Q H K+ +GIR
Sbjct: 169 HVLIPTKTDDPEDLTKLHEFIQTLPNVK---QVDVLPYHTMGVYKWKEMGIR 217
>gi|306826529|ref|ZP_07459838.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
ATCC 10782]
gi|304431256|gb|EFM34256.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
ATCC 10782]
Length = 268
Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 28 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEQMLTSDGLNTKI 71
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 72 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 131
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 132 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 182
>gi|330684768|gb|EGG96462.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus
epidermidis VCU121]
Length = 251
Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 42/187 (22%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
E T+ G G R GC +C +C
Sbjct: 9 VESMGTVDGPG---------IRYILFTQGC-----------LLRCLYCHNPDTWKINEPS 48
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
VD++ + I + G ++GGEPLLQ+ L + L G ++T+
Sbjct: 49 REVTVDEMVNEILPYQPYFDASGGGVTVSGGEPLLQMPFLEALFKELQANGVHTCLDTS- 107
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL------- 173
G + D K + L +N + L
Sbjct: 108 -----AGCVNDTPAFNRHFDELQKHTDLILLDIKHINNEKHIKLTGKPNTHILKFARKLS 162
Query: 174 ---QPMD 177
QP+
Sbjct: 163 DMKQPVW 169
>gi|239637162|ref|ZP_04678154.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus warneri
L37603]
gi|239597294|gb|EEQ79799.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus warneri
L37603]
Length = 251
Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 42/187 (22%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCR----FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKG 62
E T+ G G R GC +C +C
Sbjct: 9 VESMGTVDGPG---------IRYILFTQGC-----------LLRCLYCHNPDTWKINEPS 48
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
VD++ + I + G ++GGEPLLQ+ L + L G ++T+
Sbjct: 49 REVTVDEMVNEILPYQPYFDASGGGVTVSGGEPLLQMPFLEALFKELQANGVHTCLDTS- 107
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL------- 173
G + D K + L +N + L
Sbjct: 108 -----AGCVNDTPAFNRHFDELQKHTDLILLDIKHINNEKHIKLTGKPNTHILKFARKLS 162
Query: 174 ---QPMD 177
QP+
Sbjct: 163 DMKQPVW 169
>gi|150403478|ref|YP_001330772.1| radical SAM domain-containing protein [Methanococcus maripaludis
C7]
gi|150034508|gb|ABR66621.1| Radical SAM domain protein [Methanococcus maripaludis C7]
Length = 336
Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 24/183 (13%)
Query: 24 AVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+VF +GCN Q+ + + + + +L +
Sbjct: 74 SVFSIATAGCNFKCKHCQNWEIS--------QSLPEEVPFSELTPEDVVELAKNYL---- 121
Query: 83 KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ----GIDWICVSPK 136
T EP + + K + TNG IE ID + + K
Sbjct: 122 --CEGIAYTYTEPTIFYEFMQETAKLAKKHDLFNVMVTNGYIEKEPLKKLEIDAMNIDIK 179
Query: 137 AGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ K EL+ V ++ + I + + P ++ I++
Sbjct: 180 GNSEFYKKICLAELEPVLETCILAKKLGIHVEITNL-IVPTYN-DNPKDIEFIINFVKDE 237
Query: 196 PKW 198
Sbjct: 238 LGV 240
>gi|229816492|ref|ZP_04446791.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
13280]
gi|229807827|gb|EEP43630.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
13280]
Length = 272
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 42/150 (28%), Gaps = 26/150 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YN 66
E T+ G G R VF GC +C +C G G +
Sbjct: 25 ESMGTVDGPGV---RFVVF--TQGCP-----------MRCAYCHNPDTWTTGEGAGTCVS 68
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-----VDVPLIQALNKRGFEIAVETNG- 120
V++L E +TGGEPLLQ A +++ G
Sbjct: 69 VERLLGEYESNRPF--YRTGGLTVTGGEPLLQPEFVGDLFAAAHAAPAGRIHTCLDSCGY 126
Query: 121 -TIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
+S L IK +
Sbjct: 127 AYNPKKPERFEKLLSETDMVLLDIKHSDPV 156
>gi|222035668|emb|CAP78413.1| Pyruvate formate-lyase 2-activating enzyme [Escherichia coli LF82]
gi|312948531|gb|ADR29358.1| pyruvate formate lyase II activase [Escherichia coli O83:H1 str.
NRG 857C]
gi|320196777|gb|EFW71399.1| Pyruvate formate-lyase activating enzyme [Escherichia coli
WV_060327]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 242
>gi|315298472|gb|EFU57727.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 16-3]
Length = 279
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 185
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 186 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 229
>gi|306813781|ref|ZP_07447957.1| pyruvate formate lyase II activase [Escherichia coli NC101]
gi|305852779|gb|EFM53226.1| pyruvate formate lyase II activase [Escherichia coli NC101]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 242
>gi|42527362|ref|NP_972460.1| radical SAM domain-containing protein [Treponema denticola ATCC
35405]
gi|41817947|gb|AAS12371.1| radical SAM domain protein [Treponema denticola ATCC 35405]
gi|325474379|gb|EGC77567.1| radical SAM domain-containing protein [Treponema denticola F0402]
Length = 247
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 64/207 (30%), Gaps = 48/207 (23%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCD---------TDFVGIQGTKGGRYNVDQLADL 73
AVF GCN +C +C + F Q + Y + ++
Sbjct: 19 AAVF--LPGCN-----------IRCPYCHNAELALASPSSFTANQESSNDYYELSEIYTF 65
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQG----- 127
+E + V++GGEP + LI+ + ++TNG
Sbjct: 66 LER----RKNLISGLVISGGEPFMSPALFELIERAKSLNLAVKIDTNGLFPERIEEVLRS 121
Query: 128 ---------IDWICVSPKAGCDLKIKGGQELKL----VFPQVNVSPENYIGFDFE-RFSL 173
ID + G L K K + +++ N + E R L
Sbjct: 122 SNLQPDMIAIDVKTSPERYGELLASKTDSAAKKAKTALLKTLDILKSNTEKTEVEYRTVL 181
Query: 174 QPMDGPFLEENTNLAISYCFQNPKWRL 200
P E+ S +N +WRL
Sbjct: 182 AP--PLVSEDEIKKIASLLPKNARWRL 206
>gi|255017578|ref|ZP_05289704.1| pyruvate-formate lyase activating enzyme [Listeria monocytogenes
FSL F2-515]
Length = 227
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 58/208 (27%), Gaps = 33/208 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 11 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + D + + G ++GGEPLLQ + G +++ G
Sbjct: 53 SAQDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVHTTIDSCGGCF 112
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ DL + +++ + N DF + QP+
Sbjct: 113 TRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 172
Query: 179 -------PFLEENTNLAISYCFQNPKWR 199
E+ + P +
Sbjct: 173 HVLIPTKTDDPEDLTKLHEFIQTLPNVK 200
>gi|257126689|ref|YP_003164803.1| glycyl-radical enzyme activating protein family [Leptotrichia
buccalis C-1013-b]
gi|257050628|gb|ACV39812.1| glycyl-radical enzyme activating protein family [Leptotrichia
buccalis C-1013-b]
Length = 272
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 28/167 (16%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-------------------CRFCDT 52
T G G F GC L + + + C C
Sbjct: 13 TFDGPGIRT-----VVYFKGCPLRCLWCSNPETQKLENEFWDYDGSLYKGNKTSCSGC-- 65
Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110
++++ ++ + G L+GGE L+ + L + L +
Sbjct: 66 PAANTLKQVAKDMTLEEVFAIVMKDENFYRNSGGGVTLSGGEILVNSAFAIELFEKLKEE 125
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
A+ET G ++ D+K ++ K N
Sbjct: 126 YINTAIETTGYGNYKDFEKLAKLTDTILFDIKHMDNEKHKKYTAVSN 172
>gi|194433239|ref|ZP_03065520.1| glycyl-radical enzyme activating protein family [Shigella
dysenteriae 1012]
gi|194418523|gb|EDX34611.1| glycyl-radical enzyme activating protein family [Shigella
dysenteriae 1012]
gi|332085291|gb|EGI90465.1| glycyl-radical enzyme activating family protein [Shigella
dysenteriae 155-74]
Length = 279
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRVLEN 185
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 186 LRLLVSEGVNVIPRLPLIPSFT-LSRENMQQALDVLIP-LNIR---QIH 229
>gi|29346465|ref|NP_809968.1| pyruvate formate-lyase activating enzyme [Bacteroides
thetaiotaomicron VPI-5482]
gi|298387757|ref|ZP_06997308.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. 1_1_14]
gi|29338361|gb|AAO76162.1| pyruvate formate-lyase activating enzyme [Bacteroides
thetaiotaomicron VPI-5482]
gi|298259613|gb|EFI02486.1| pyruvate formate-lyase-activating enzyme [Bacteroides sp. 1_1_14]
Length = 208
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ GEG F GC L +C++C Y+ +QL
Sbjct: 15 STDGEGVTTLVA-----FHGCPL-----------RCKYCLNPQSLHSEGIWKNYDCEQLY 58
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETN 119
+ + + + GGEP LQ + + L + ++++VET+
Sbjct: 59 EEVRQDELYFLATNGGITFGGGEPCLQSDFIYEFRQLCGQEWQLSVETS 107
>gi|95931056|ref|ZP_01313783.1| Ribonucleoside-triphosphate reductase, anaerobic-like
[Desulfuromonas acetoxidans DSM 684]
gi|95132865|gb|EAT14537.1| Ribonucleoside-triphosphate reductase, anaerobic-like
[Desulfuromonas acetoxidans DSM 684]
Length = 231
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 30/145 (20%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL G FC + + V+ L D ++++ + V
Sbjct: 25 GGCNLSCG-----------FCHNPTLIDDFDQYPDMPVEALLDALQQRLGFIDG----VV 69
Query: 90 LTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
++GGEP L + + + G + ++TNG ++ Q
Sbjct: 70 ISGGEPTLAPTLSSTLSQIKQMGLAVKLDTNGLRPDVVA--------------RLMEQQL 115
Query: 149 LKLVFPQVNVSPENYIGFDFERFSL 173
L V V SPE Y +L
Sbjct: 116 LDYVALDVKTSPERYGELHHRPVAL 140
>gi|326390978|ref|ZP_08212528.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter ethanolicus JW 200]
gi|325993020|gb|EGD51462.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter ethanolicus JW 200]
Length = 228
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ G + + D ++++ E
Sbjct: 19 ATVFV--SGCNFK-----------CPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
+TGGEP L I+ + F + ++TNG+
Sbjct: 64 G----VCITGGEPTLWKGLQDFIKNIKDLNFSVKLDTNGSRPQ 102
>gi|325113309|ref|YP_004277254.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidiphilium multivorum AIU301]
gi|325052846|dbj|BAJ83181.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidiphilium multivorum AIU301]
Length = 235
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F TL G A F R GC L +CR+C + + ++
Sbjct: 15 FTTLDVPGRLA--ATFFLR--GCPL-----------RCRYCHNADLQARRGTFPLRWLEA 59
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
L L + + + V +GGEP + + +I+ + GFE+A+ T G G
Sbjct: 60 LTWLDQRRGLLDS-----VVFSGGEPTMDRCLEQMIRDVRSLGFEVALHTAGVSPKRLGR 114
Query: 129 D-----WICVSPKAGCDLKIKG 145
W+ + KA +
Sbjct: 115 VLPLLQWVGLDIKAPFGDYARI 136
>gi|302335095|ref|YP_003800302.1| pyruvate formate-lyase activating enzyme [Olsenella uli DSM 7084]
gi|301318935|gb|ADK67422.1| pyruvate formate-lyase activating enzyme [Olsenella uli DSM 7084]
Length = 253
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F GC +CR+C KG +
Sbjct: 9 ESFGSADGPGVR------FLIFLQGCP-----------MRCRYCHNVDTW-PLDKGSETS 50
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
D L D E +G ++GGE LLQ + + L ++R ++++
Sbjct: 51 ADDLLDKAERYRGYWGPQG-GITVSGGEALLQAEFVLELFTKAHERHVNTCLDSS 104
>gi|325068902|ref|ZP_08127575.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces oris K20]
Length = 291
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 57/190 (30%), Gaps = 30/190 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L ++C + G +L
Sbjct: 64 VDGPGTRM---TVF--LNGCPLRC-----------QYCHNPDTFLM-KDGEPVEASELLR 106
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT------IEP 124
+ L+GGE L+Q L+ K G ++T+G E
Sbjct: 107 RMRRYRGVFRASKGGITLSGGEVLMQPAFAGKLLAGAKKMGIHTCIDTSGFLGANASDEM 166
Query: 125 PQGIDWICVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPF 180
ID + + K+G + K + L + I + RF L P D P
Sbjct: 167 LDNIDLVLLDVKSGDEETYKKVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPE 225
Query: 181 LEENTNLAIS 190
N I
Sbjct: 226 NVHNVARIIE 235
>gi|309782387|ref|ZP_07677111.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia sp. 5_7_47FAA]
gi|308918724|gb|EFP64397.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ralstonia sp. 5_7_47FAA]
Length = 237
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 28/139 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + + + +
Sbjct: 28 FSSVDWPGQLA--AVVFV--AGCP-----------WRCHYCHNPHLQTRT---RTLDWND 69
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE----- 123
+ ++ + + V +GGEPL + +P LI+ + G++I + T G
Sbjct: 70 VFAFLQRRTGLLDA----VVFSGGEPLSEPHLPQLIRDVRALGYKIGLHTGGIYPARLTD 125
Query: 124 PPQGIDWICVSPKAGCDLK 142
+DW+ + K
Sbjct: 126 VLPQLDWVGLDIKTSAPHY 144
>gi|326773240|ref|ZP_08232523.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces viscosus
C505]
gi|326636470|gb|EGE37373.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces viscosus
C505]
Length = 291
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 57/190 (30%), Gaps = 30/190 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L ++C + G +L
Sbjct: 64 VDGPGTRM---TVF--LNGCPLRC-----------QYCHNPDTFLM-KDGEPVEASELLR 106
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT------IEP 124
+ L+GGE L+Q L+ K G ++T+G E
Sbjct: 107 RMRRYRGVFRASKGGITLSGGEVLMQPAFAGRLLAGAKKMGIHTCIDTSGFLGANASDEM 166
Query: 125 PQGIDWICVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPF 180
ID + + K+G + K + L + I + RF L P D P
Sbjct: 167 LDNIDLVLLDVKSGDEETYKKVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPE 225
Query: 181 LEENTNLAIS 190
N I
Sbjct: 226 NVHNVARIIE 235
>gi|82778874|ref|YP_405223.1| pyruvate formate lyase II activase [Shigella dysenteriae Sd197]
gi|309783898|ref|ZP_07678543.1| glycyl-radical enzyme activating family protein [Shigella
dysenteriae 1617]
gi|81243022|gb|ABB63732.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
dysenteriae Sd197]
gi|308928269|gb|EFP73731.1| glycyl-radical enzyme activating family protein [Shigella
dysenteriae 1617]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPVSKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVMEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 234
>gi|320180323|gb|EFW55255.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC
9905]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 242
>gi|331655650|ref|ZP_08356642.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli M718]
gi|331046751|gb|EGI18836.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli M718]
Length = 315
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRSSGGGVTLSGGEVLMQAEFATRF 161
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVMEN 221
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 222 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 265
>gi|158337693|ref|YP_001518869.1| hypothetical protein AM1_4577 [Acaryochloris marina MBIC11017]
gi|158307934|gb|ABW29551.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 324
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R +A+C FCD G + D + +E+ G +Y TGGEPLL+ DV
Sbjct: 13 RCNARCHFCD----IWALDPGKEADFDTIEHNLEDLKRLG---VKYVDFTGGEPLLRTDV 65
Query: 102 -PLIQALNKRGFEIAVETN 119
+ Q + GF ++ TN
Sbjct: 66 GRIYQTAKQLGFYTSMTTN 84
>gi|281181023|dbj|BAI57353.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
SE15]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 234
>gi|26250725|ref|NP_756765.1| pyruvate formate lyase II activase [Escherichia coli CFT073]
gi|91213500|ref|YP_543486.1| pyruvate formate lyase II activase [Escherichia coli UTI89]
gi|218561023|ref|YP_002393936.1| pyruvate formate lyase II activase [Escherichia coli S88]
gi|218692238|ref|YP_002400450.1| pyruvate formate lyase II activase [Escherichia coli ED1a]
gi|227885301|ref|ZP_04003106.1| [formate-C-acetyltransferase]-activating enzyme [Escherichia coli
83972]
gi|26111156|gb|AAN83339.1|AE016770_139 Pyruvate formate-lyase 2 activating enzyme [Escherichia coli
CFT073]
gi|91075074|gb|ABE09955.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli UTI89]
gi|218367792|emb|CAR05586.1| pyruvate formate lyase II activase [Escherichia coli S88]
gi|218429802|emb|CAR10764.2| pyruvate formate lyase II activase [Escherichia coli ED1a]
gi|227837677|gb|EEJ48143.1| [formate-C-acetyltransferase]-activating enzyme [Escherichia coli
83972]
gi|294492844|gb|ADE91600.1| glycyl-radical enzyme activating protein family [Escherichia coli
IHE3034]
gi|307556100|gb|ADN48875.1| pyruvate formate-lyase 2-activating enzyme [Escherichia coli ABU
83972]
gi|307629029|gb|ADN73333.1| pyruvate formate lyase II activase [Escherichia coli UM146]
gi|323949446|gb|EGB45335.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli H252]
gi|323954273|gb|EGB50058.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli H263]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 234
>gi|110644292|ref|YP_672022.1| pyruvate formate lyase II activase [Escherichia coli 536]
gi|110345884|gb|ABG72121.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli 536]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 234
>gi|309797156|ref|ZP_07691553.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 145-7]
gi|308119235|gb|EFO56497.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 145-7]
Length = 279
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATHF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|257457814|ref|ZP_05622974.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
gi|257444776|gb|EEV19859.1| radical SAM domain protein [Treponema vincentii ATCC 35580]
Length = 256
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 28/154 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-----QGTKGGRYNVDQLADLIEEQ 77
AVF GCNL + C + F G Q ++ + + IE++
Sbjct: 19 AAVF--LPGCNLRCPYCYNSELV----CASIFEGPMRNPLQSGNNDYVPIEAVYEHIEKR 72
Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK 136
+ V++GGE LL LI K G + ++TNG + +
Sbjct: 73 KAVLQG----LVISGGEALLSPVLTELILRAKKTGLAVKLDTNGLLPDALSM-------- 120
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
L ++ + P Y F R
Sbjct: 121 ----LLHDKTLCPDMIAIDIKTDPARYHELKFCR 150
>gi|218707579|ref|YP_002415098.1| pyruvate formate lyase II activase [Escherichia coli UMN026]
gi|293407573|ref|ZP_06651492.1| pyruvate formate-lyase activating enzyme [Escherichia coli
FVEC1412]
gi|298383321|ref|ZP_06992914.1| pyruvate formate lyase activating enzyme [Escherichia coli
FVEC1302]
gi|218434676|emb|CAR15609.1| pyruvate formate lyase II activase [Escherichia coli UMN026]
gi|291425490|gb|EFE98529.1| pyruvate formate-lyase activating enzyme [Escherichia coli
FVEC1412]
gi|298276355|gb|EFI17875.1| pyruvate formate lyase activating enzyme [Escherichia coli
FVEC1302]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPTSKLLPLAKLCDEVLFDLKIMDVTQARDVVK 189
>gi|329945642|ref|ZP_08293375.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328528645|gb|EGF55610.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 291
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 30/190 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L +C + G +L
Sbjct: 64 VDGPGTRM---TVF--LNGCPLRCL-----------YCHNPDTFLM-KDGEPVEASELLR 106
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT------IEP 124
+ L+GGE L+Q L+ K G ++T+G E
Sbjct: 107 RMRRYRGVFRASKGGITLSGGEVLMQPAFAGRLLSGAKKMGIHTCIDTSGFLGANASDEM 166
Query: 125 PQGIDWICVSPKAGCDLKIKGG--QELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPF 180
ID + + K+G + K + L + I + RF L P D P
Sbjct: 167 LDNIDLVLLDVKSGDEETYKRVTGRSLAPTITFGDRLAAKGIEI-WARFVLVPDLTDDPE 225
Query: 181 LEENTNLAIS 190
N I
Sbjct: 226 NVHNVARIIE 235
>gi|293413394|ref|ZP_06656055.1| pyruvate formate-lyase activating enzyme [Escherichia coli B354]
gi|291468142|gb|EFF10640.1| pyruvate formate-lyase activating enzyme [Escherichia coli B354]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 67/229 (29%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPTSKLLPLAKLCDEVLFDLKIMDVTQARDVVKMNLPRVLEN 198
Query: 164 IGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
+ R L P EN A+ R Q H
Sbjct: 199 LRLLVCEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 242
>gi|116872839|ref|YP_849620.1| pyruvate formate-lyase activating enzyme [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741717|emb|CAK20841.1| pyruvate formate-lyase activating enzyme [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 248
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 59/208 (28%), Gaps = 33/208 (15%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G F F GC +C+FC GT R
Sbjct: 11 VETMGTVDGPGIR------FIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER- 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+ + + + + G ++GGEPLLQ + K G +++ G
Sbjct: 53 SAQNVFNEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKKAGVHTTIDSCGGCF 112
Query: 124 PPQGIDWICVS-PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL---QPMDG- 178
+ DL + +++ + N DF + QP+
Sbjct: 113 TRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAHYLRDKEQPIWIR 172
Query: 179 -------PFLEENTNLAISYCFQNPKWR 199
E+ + P +
Sbjct: 173 HVLIPTKTDDPEDLTKLHEFIQTLPNVK 200
>gi|330908275|gb|EGH36794.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86]
Length = 279
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 185
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 186 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 221
>gi|331660512|ref|ZP_08361446.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA206]
gi|331052461|gb|EGI24498.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA206]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 234
>gi|191172690|ref|ZP_03034228.1| glycyl-radical enzyme activating protein family [Escherichia coli
F11]
gi|300986174|ref|ZP_07177758.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 200-1]
gi|190906994|gb|EDV66595.1| glycyl-radical enzyme activating protein family [Escherichia coli
F11]
gi|300306408|gb|EFJ60928.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 200-1]
gi|324012471|gb|EGB81690.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 60-1]
Length = 279
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 185
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 186 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 221
>gi|150400948|ref|YP_001324714.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus aeolicus Nankai-3]
gi|150013651|gb|ABR56102.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus aeolicus Nankai-3]
Length = 245
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 42/175 (24%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN+ G +C + T+ + ++ D I+ +
Sbjct: 20 AVVF--LSGCNMLCG-----------YCHNYEHMLDNTRNIDMSPKEVFDKIDLIFADA- 65
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
V++GGEP LQ + L + G + ++TNGT
Sbjct: 66 -----LVISGGEPTLQPEGVKELCKLAKNEGLAVKLDTNGTSVDIVKDIIDNKLIDYIAL 120
Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
G + + + +G +++N I+YC N
Sbjct: 121 DVKCGFDKYEKIARY---------------------NGSIIKKNILEIINYCISN 154
>gi|324111425|gb|EGC05406.1| glycyl-radical enzyme activating protein family protein
[Escherichia fergusonii B253]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + + G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDVFFRASGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|296389601|ref|ZP_06879076.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
aeruginosa PAb1]
Length = 370
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G + + IE E +
Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELSTAEW---IEVFRQARELGAAQLGFS 58
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPLL Q LI+A GF + T+G G+D + +S +A +
Sbjct: 59 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQISFQAADEEV 118
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ F Q ++ + L + +N I C +
Sbjct: 119 NNLLAGSRKAFAQ-KLAIARAVKAHGYPMVLNFVTHRHNIDNIERIIQLCIE 169
>gi|319941886|ref|ZP_08016207.1| ribonucleotide reductase activating protein [Sutterella
wadsworthensis 3_1_45B]
gi|319804539|gb|EFW01409.1| ribonucleotide reductase activating protein [Sutterella
wadsworthensis 3_1_45B]
Length = 264
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 23/136 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G + F GC +C +C +Q
Sbjct: 40 FTTIDYPGKLSAVA--FV--QGCP-----------WRCIYCQNP--WMQPKDFDPSLSHD 82
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE----- 123
+EE V +GGEP + +P + + GF++ + T G I
Sbjct: 83 SWHRLEELLKRRRGLLDAVVFSGGEPTVDPALPDAVARVKAMGFKVGLHTGGIIPARLAR 142
Query: 124 PPQGIDWICVSPKAGC 139
+DW+ + KA
Sbjct: 143 VLPMLDWVGIDVKAPP 158
>gi|300975911|ref|ZP_07173218.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 45-1]
gi|301048629|ref|ZP_07195642.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 185-1]
gi|300299549|gb|EFJ55934.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 185-1]
gi|300410177|gb|EFJ93715.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 45-1]
gi|315289677|gb|EFU49070.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 110-3]
gi|315292678|gb|EFU52030.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 153-1]
gi|324006717|gb|EGB75936.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 57-2]
Length = 279
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 185
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 186 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 221
>gi|83594329|ref|YP_428081.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
gi|83577243|gb|ABC23794.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
Length = 265
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 17/139 (12%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G VF SGC +C +C + G ++D+ + +
Sbjct: 41 GMRFVFF-LSGC-----------QFRCAYCHNPDTW-KLHNGRALDLDEAMAEV-SPYAG 86
Query: 81 GEKEGRYCVLTGGEPLLQVD---VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
+ ++GGEPL+Q D L + ++ G A++T G + W
Sbjct: 87 FLRIAGGVTVSGGEPLMQADFTGALLARLKDQLGLHTALDTQGFLHAGVSDRWFDPVDLV 146
Query: 138 GCDLKIKGGQELKLVFPQV 156
D+K + + Q
Sbjct: 147 LLDIKHSDPEAYHRLTGQA 165
>gi|299069358|emb|CBJ40624.1| putative ribonucleotide reductase activating transmembrane protein
(nrdG) [Ralstonia solanacearum CMR15]
Length = 241
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + +
Sbjct: 32 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHLQERARGPD------ 70
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ + V +GGEPL + +P LI A GF I + T G
Sbjct: 71 -WSEVLDFLGRRRNLLDAVVFSGGEPLSEPRLPQLIDAARALGFRIGLHTGGIYP 124
>gi|161760543|ref|NP_908108.2| molybdenum cofactor biosynthesis protein A [Wolinella succinogenes
DSM 1740]
Length = 321
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C DT + + QL +L++ G K+ R +TGGEP+++
Sbjct: 19 NRCNFRCQYCMPDTPEDFFDAEED--IPLAQLLELVKVAIDEGVKKIR---ITGGEPMIR 73
Query: 99 VDVPLIQAL---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
D+ A +IA+ TNG K E + +
Sbjct: 74 KDLDWFIAQIYLYNPEIDIALTTNGFYLRHFAKSLKEAGLKRINVSLDSLKPERVALISK 133
Query: 156 VNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLA 188
NV P+ G D + ++ P+ G +E +L
Sbjct: 134 KNVLPQILEGIDLALSVGLIVKLNMVPLKGVNEDEIPDLI 173
>gi|139438417|ref|ZP_01771933.1| Hypothetical protein COLAER_00923 [Collinsella aerofaciens ATCC
25986]
gi|133775956|gb|EBA39776.1| Hypothetical protein COLAER_00923 [Collinsella aerofaciens ATCC
25986]
Length = 272
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 26/128 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-N 66
E T+ G G R VF GC +C +C GG
Sbjct: 27 ETMGTVDGPGI---RFVVFV--QGCP-----------MRCAYCHNPDTW--SVNGGTMVT 68
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKR---GFEIAVETNGT 121
V+ L D + ++GGEPLLQ L A++ +++ G
Sbjct: 69 VEHLMDEFQSNHEF--YRSGGITVSGGEPLLQPEFLADLFCAMHNNPDGRVHTCLDSCGY 126
Query: 122 IEPPQGID 129
P +
Sbjct: 127 AFDPAHPE 134
>gi|134046062|ref|YP_001097548.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus maripaludis C5]
gi|132663687|gb|ABO35333.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus maripaludis C5]
Length = 242
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 45/172 (26%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF SGCN+ G Q+ + T +++ + ++ +
Sbjct: 28 VF--LSGCNMKCGYCQNYETI-------------TTNISEMTAEEVFNGMDLMF------ 66
Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
V++GGEP LQ + + L + ++GF + ++TNGT
Sbjct: 67 AESLVISGGEPTLQPEAVLELAKLAKEKGFPVKLDTNGTNPDLVE--------------- 111
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
KLV + + F+ + ++E+ I C +
Sbjct: 112 -------KLVLNNLINYIAIDVKAGFDNYEKITGYKKEIKEDILKIIDICKK 156
>gi|300896453|ref|ZP_07114982.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 198-1]
gi|300359681|gb|EFJ75551.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 198-1]
Length = 279
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPTSKLLPLAKLCDEVLFDLKIMDVTQARDVVK 176
>gi|187731448|ref|YP_001882647.1| pyruvate formate lyase II activase [Shigella boydii CDC 3083-94]
gi|187428440|gb|ACD07714.1| glycyl-radical enzyme activating protein family [Shigella boydii
CDC 3083-94]
Length = 292
Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPVSKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|331685696|ref|ZP_08386279.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli H299]
gi|331077167|gb|EGI48382.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli H299]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 42/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 198
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 199 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 242
>gi|282855537|ref|ZP_06264856.1| pyruvate formate-lyase 1-activating enzyme [Pyramidobacter
piscolens W5455]
gi|282586680|gb|EFB91929.1| pyruvate formate-lyase 1-activating enzyme [Pyramidobacter
piscolens W5455]
Length = 286
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 20/105 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
E F ++ G G R +F F GC + +CR+C G
Sbjct: 18 ESFGSVDGPGV---RFVIF--FKGC-----------AMRCRYCHNPDTW-GCRGGELKTA 60
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
+L D E KEG ++GGEPLLQ+D + L + KR
Sbjct: 61 AELLDRAERYRSYWGKEG-GITVSGGEPLLQIDFLLELFREAKKR 104
>gi|269792248|ref|YP_003317152.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099883|gb|ACZ18870.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 227
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 20/102 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
++F +GCNL +C FC + G +
Sbjct: 23 ASLF--TAGCNL-----------RCPFCHNPELVPVPVAGD------GPEAFLRVVEGRR 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
++GGEP + L+ + G ++ ++TNGT
Sbjct: 64 AFLDGVCISGGEPCMHRGLGELMARIRSMGLKVKLDTNGTYP 105
>gi|322410975|gb|EFY01883.1| Pyruvate formate-lyase activating enzyme [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 257
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKAPEEMLTSDSLRTEI 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 61 VGQEKTVDEVLEEVLKDIDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 121 TAFAKHDQFVTLIDYVDFIYTDLKHYDQLRHRKVTGVRNDLIIKNIHYAFQ 171
>gi|320096071|ref|ZP_08027672.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
taxon 178 str. F0338]
gi|319977011|gb|EFW08753.1| pyruvate formate-lyase activating enzyme [Actinomyces sp. oral
taxon 178 str. F0338]
Length = 293
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 19/111 (17%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L +C + G + ++L
Sbjct: 63 VDGPGTRM---TVF--LNGCPLRCL-----------YCHNPDTFLM-KDGAPISDEELLG 105
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGT 121
I L+GGE L+Q +I + G ++T+G
Sbjct: 106 RIARYRRIFRATNGGITLSGGEVLMQPAFAKRIIHGAKQMGVHTCIDTSGY 156
>gi|301155416|emb|CBW14882.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 262
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVD 68
F ++G+G ++F GC L C +C + +G + ++
Sbjct: 17 FSNVEGQGNRT---SIF--LQGCKLN-----------CLYCHNPETIPRYAEGAHQVSLQ 60
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQ 126
L + + + R ++GGEP + VPL Q L + G ++++G E
Sbjct: 61 YLYEQVMDAVPF----IRGVTVSGGEPTIHHKKLVPLFQKLREEGLTCYLDSSGFFEFDA 116
Query: 127 GIDWICVSPKAGCDLKIKG 145
I V+ K DLK +G
Sbjct: 117 IRPLIEVTDKFLFDLKGEG 135
>gi|256752118|ref|ZP_05492985.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|256749027|gb|EEU62064.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter ethanolicus CCSD1]
Length = 136
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ G + + D ++++ E
Sbjct: 19 ATVFV--SGCNFK-----------CPYCHNSYLIQIRE--GIRSEKEFFDYLKKRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
+TGGEP L I+ + FE+ ++TNG+
Sbjct: 64 G----VCITGGEPTLWKGLKDFIKNIKDLNFEVKLDTNGSRPQ 102
>gi|330898849|gb|EGH30268.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. japonica str. M301072PT]
Length = 372
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 19/178 (10%)
Query: 27 CRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
R LW E R QC +C + +G + +Q +++E E
Sbjct: 2 VRL---PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQE---AREMGA 53
Query: 86 RYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPK 136
+GGEPL+ Q LI + GF + T+G G+D I +S +
Sbjct: 54 AQIGFSGGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQ 113
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
A + K F Q + + L + + + I C
Sbjct: 114 ASDEQVNNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 170
>gi|327250596|gb|EGE62304.1| glycyl-radical enzyme activating family protein [Escherichia coli
STEC_7v]
Length = 279
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|323964310|gb|EGB59793.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli M863]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|323934441|gb|EGB30854.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli E1520]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|320182813|gb|EFW57690.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC
796-83]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|317499337|ref|ZP_07957607.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316893372|gb|EFV15584.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 264
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 30/155 (19%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG--------- 59
IF G+G VF GC L +C++C T +
Sbjct: 23 IF---DGDGLRT---VVF--LKGCPL-----------RCKWCSTPESYQKKIQTTLDGTI 63
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVE 117
T G V+ + + + + G L+GGE L Q + + G A+E
Sbjct: 64 TYGQIMTVEDVMVEVRKDSLFYFHSGGGVTLSGGEILAQPEFAYYILRRSCYEGINTAIE 123
Query: 118 TNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
++ + + + A D+K+ + K
Sbjct: 124 SSFNADWDKIEPILGCLDTAFVDMKLMDPERHKYY 158
>gi|331665608|ref|ZP_08366506.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA143]
gi|331057293|gb|EGI29283.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA143]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|302339995|ref|YP_003805201.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
DSM 11293]
gi|301637180|gb|ADK82607.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
DSM 11293]
Length = 245
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 18/104 (17%)
Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
RF GC L +C +C + T G ++ + +
Sbjct: 22 IRFLIFTQGCPL-----------RCLYCHNPDTW-KRTGGKEVTAHEIIETARKYKNYLL 69
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
G +TGGEPL Q D L+ G AV+T+G P
Sbjct: 70 ASGGGITITGGEPLFQADFVQALLLEAKAAGIHTAVDTSGFAPP 113
>gi|300948266|ref|ZP_07162383.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 116-1]
gi|300954683|ref|ZP_07167122.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 175-1]
gi|301024098|ref|ZP_07187811.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 196-1]
gi|301645143|ref|ZP_07245101.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 146-1]
gi|299880553|gb|EFI88764.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 196-1]
gi|300318353|gb|EFJ68137.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 175-1]
gi|300452209|gb|EFK15829.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 116-1]
gi|301076570|gb|EFK91376.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 146-1]
gi|315617748|gb|EFU98353.1| glycyl-radical enzyme activating family protein [Escherichia coli
3431]
Length = 279
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|293417460|ref|ZP_06660084.1| pyruvate formate lyase activating enzyme [Escherichia coli B185]
gi|291430980|gb|EFF03976.1| pyruvate formate lyase activating enzyme [Escherichia coli B185]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|281603342|gb|ADA76326.1| Glycyl-radical enzyme activating protein family [Shigella flexneri
2002017]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|215489289|ref|YP_002331720.1| pyruvate formate lyase II activase [Escherichia coli O127:H6 str.
E2348/69]
gi|312965391|ref|ZP_07779624.1| glycyl-radical enzyme activating family protein [Escherichia coli
2362-75]
gi|215267361|emb|CAS11812.1| pyruvate formate lyase II activase [Escherichia coli O127:H6 str.
E2348/69]
gi|312290065|gb|EFR17952.1| glycyl-radical enzyme activating family protein [Escherichia coli
2362-75]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|170680362|ref|YP_001746344.1| pyruvate formate lyase II activase [Escherichia coli SMS-3-5]
gi|170518080|gb|ACB16258.1| glycyl-radical enzyme activating protein family [Escherichia coli
SMS-3-5]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|82546303|ref|YP_410250.1| pyruvate formate lyase II activase [Shigella boydii Sb227]
gi|81247714|gb|ABB68422.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
boydii Sb227]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|49176447|ref|NP_418387.3| pyruvate formate lyase II activase [Escherichia coli str. K-12
substr. MG1655]
gi|89110078|ref|AP_003858.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
substr. W3110]
gi|170083421|ref|YP_001732741.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
substr. DH10B]
gi|238903017|ref|YP_002928813.1| pyruvate formate lyase II activase [Escherichia coli BW2952]
gi|256026010|ref|ZP_05439875.1| pyruvate formate lyase II activase [Escherichia sp. 4_1_40B]
gi|307140651|ref|ZP_07500007.1| pyruvate formate lyase II activase [Escherichia coli H736]
gi|585665|sp|P32675|PFLC_ECOLI RecName: Full=Pyruvate formate-lyase 2-activating enzyme; AltName:
Full=Formate-C-acetyltransferase-activating enzyme 2;
AltName: Full=PFL-activating enzyme 2
gi|1790389|gb|AAC76934.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
substr. MG1655]
gi|85676109|dbj|BAE77359.1| pyruvate formate lyase II activase [Escherichia coli str. K12
substr. W3110]
gi|169891256|gb|ACB04963.1| pyruvate formate lyase II activase [Escherichia coli str. K-12
substr. DH10B]
gi|238863360|gb|ACR65358.1| pyruvate formate lyase II activase [Escherichia coli BW2952]
gi|260451212|gb|ACX41634.1| glycyl-radical enzyme activating protein family [Escherichia coli
DH1]
gi|315138517|dbj|BAJ45676.1| pyruvate formate lyase II activase [Escherichia coli DH1]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|194429391|ref|ZP_03061915.1| glycyl-radical enzyme activating protein family [Escherichia coli
B171]
gi|209921436|ref|YP_002295520.1| pyruvate formate lyase II activase [Escherichia coli SE11]
gi|218556513|ref|YP_002389427.1| pyruvate formate lyase II activase [Escherichia coli IAI1]
gi|260846759|ref|YP_003224537.1| pyruvate formate lyase II activase [Escherichia coli O103:H2 str.
12009]
gi|194412538|gb|EDX28836.1| glycyl-radical enzyme activating protein family [Escherichia coli
B171]
gi|209914695|dbj|BAG79769.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
SE11]
gi|218363282|emb|CAR00931.1| pyruvate formate lyase II activase [Escherichia coli IAI1]
gi|257761906|dbj|BAI33403.1| pyruvate formate lyase II activase [Escherichia coli O103:H2 str.
12009]
Length = 292
Score = 45.7 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|319946489|ref|ZP_08020725.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
ATCC 700641]
gi|319747320|gb|EFV99577.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
ATCC 700641]
Length = 264
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------QMRCQYCHNPDTWAMETNMSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D++EE + ++GGE LLQ+D + L + G ++T
Sbjct: 60 ERTVDDVLEEALRYRGFWGQKGGITVSGGEALLQIDFLIALFTKAQELGIHCTLDTC 116
>gi|300926218|ref|ZP_07142023.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 182-1]
gi|300417753|gb|EFK01064.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 182-1]
gi|323161239|gb|EFZ47153.1| glycyl-radical enzyme activating family protein [Escherichia coli
E128010]
gi|324019663|gb|EGB88882.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 117-3]
Length = 279
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|256021655|ref|ZP_05435520.1| pyruvate formate lyase II activase [Shigella sp. D9]
Length = 292
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|218701338|ref|YP_002408967.1| pyruvate formate lyase II activase [Escherichia coli IAI39]
gi|218371324|emb|CAR19156.1| pyruvate formate lyase II activase [Escherichia coli IAI39]
Length = 292
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|224538042|ref|ZP_03678581.1| hypothetical protein BACCELL_02931 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520332|gb|EEF89437.1| hypothetical protein BACCELL_02931 [Bacteroides cellulosilyticus
DSM 14838]
Length = 203
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG F GC L C++C Y+ +QL +
Sbjct: 17 IDGEGVTTLVA-----FHGCPL-----------HCKYCLNPQSLSDDFDFPLYSCEQLYE 60
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETN 119
++ + GGEP L+ + + + L + + I VET+
Sbjct: 61 RVKVDELYFLATRGGITFGGGEPCLRSEFISRFRELCGKEWRITVETS 108
>gi|254168929|ref|ZP_04875769.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aciduliprofundum boonei T469]
gi|197622193|gb|EDY34768.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aciduliprofundum boonei T469]
Length = 227
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 18/113 (15%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF GCN +C FC + + + D + + I+
Sbjct: 19 VATVF--TYGCNF-----------RCPFCHN-YTLVTEPPTTLLSEDNVIEEIKGL---- 60
Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
+ +TGGEP + D+ + ++TNGT +S
Sbjct: 61 KGWIDGICITGGEPTIHKDLKDFVKKLSEIAPVKLDTNGTEPYTLIEVIPYIS 113
>gi|258513679|ref|YP_003189901.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257777384|gb|ACV61278.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 333
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 15/116 (12%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL G FC + + +Q+ D+ +Q +
Sbjct: 79 TFGCNLRCG-----------FCQNWSIAHETPHTVGITPEQVLDIFRQQ--AADVNCIGL 125
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
T EPL+ + + + ++ GF+ + TNG I + I D+K
Sbjct: 126 AYTYSEPLMWYEFVLDTAKLIHAAGFKNVLVTNGYIGEEPLREIIPYIDAMNIDIK 181
>gi|323189621|gb|EFZ74900.1| glycyl-radical enzyme activating family protein [Escherichia coli
RN587/1]
Length = 279
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATLF 125
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|300937144|ref|ZP_07152000.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 21-1]
gi|300457787|gb|EFK21280.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 21-1]
Length = 279
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPTSKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|331675446|ref|ZP_08376196.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA280]
gi|284924053|emb|CBG37152.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli 042]
gi|331067506|gb|EGI38911.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA280]
Length = 292
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|269217507|ref|ZP_06161361.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces sp. oral taxon 848 str. F0332]
gi|269213128|gb|EEZ79468.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces sp. oral taxon 848 str. F0332]
Length = 265
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 22/128 (17%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G++A GC L C +C + + +E
Sbjct: 5 GKLAAVVFLQGCPL-----------ACPYCQN-----EAILDPKVPGAVPWSQVEALLAR 48
Query: 81 GEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIEPP-----QGIDWICVS 134
VLTGGE L V + + + GF + + T G DW+ +
Sbjct: 49 RAGLLDGVVLTGGEALRQAGVVDAARRVREMGFGVGLHTAGAYPRALAKILPHTDWVGID 108
Query: 135 PKAGCDLK 142
KA D
Sbjct: 109 VKAMPDDY 116
>gi|22299396|ref|NP_682643.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1]
gi|22295579|dbj|BAC09405.1| moaA/nifB/pqqE family protein [Thermosynechococcus elongatus BP-1]
Length = 335
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R +A+C FCD G + + + + G +Y TGGEPLL+ D
Sbjct: 13 RCNARCHFCD----IWALEPGKEADFSTIQTNLRDLKRLG---VKYVDFTGGEPLLRADA 65
Query: 102 P-LIQALNKRGFEIAVETN 119
P + + + GF ++ TN
Sbjct: 66 PAIYREAKRLGFITSMTTN 84
>gi|300916995|ref|ZP_07133693.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 115-1]
gi|301023724|ref|ZP_07187467.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 69-1]
gi|300396908|gb|EFJ80446.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 69-1]
gi|300415747|gb|EFJ99057.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 115-1]
gi|325499308|gb|EGC97167.1| pyruvate formate lyase activating enzyme [Escherichia fergusonii
ECD227]
Length = 279
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|309777240|ref|ZP_07672203.1| putative pyruvate formate-lyase activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
gi|308915110|gb|EFP60887.1| putative pyruvate formate-lyase activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
Length = 298
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 51/161 (31%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSA------------------- 45
E F T G G VF GC L W + + +A
Sbjct: 8 ERFATHDGPGIRT---TVF--LKGCPLYCPWCANPETQKAASTMFHYKERCVSCRQCEQV 62
Query: 46 ---------------------QCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
CR C+ T +G ++D + + I + +
Sbjct: 63 CPMQAITFEQGRFTYHEERCQGCRQCERTCLQDAIQFQGIDMSLDTIMEEIRKDKDYYDN 122
Query: 84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
G +GGEP +Q L+QA + G+ AVET G
Sbjct: 123 SGGGVTFSGGEPFVQHTALWELLQACKREGYHTAVETTGNY 163
>gi|30064761|ref|NP_838932.1| pyruvate formate lyase II activase [Shigella flexneri 2a str.
2457T]
gi|56480491|ref|NP_709752.2| pyruvate formate lyase II activase [Shigella flexneri 2a str. 301]
gi|74314454|ref|YP_312873.1| pyruvate formate lyase II activase [Shigella sonnei Ss046]
gi|110807808|ref|YP_691328.1| pyruvate formate lyase II activase [Shigella flexneri 5 str. 8401]
gi|157154749|ref|YP_001465449.1| pyruvate formate lyase II activase [Escherichia coli E24377A]
gi|218697666|ref|YP_002405333.1| pyruvate formate lyase II activase [Escherichia coli 55989]
gi|307314720|ref|ZP_07594317.1| glycyl-radical enzyme activating protein family [Escherichia coli
W]
gi|331670807|ref|ZP_08371643.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA271]
gi|30043021|gb|AAP18743.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
flexneri 2a str. 2457T]
gi|56384042|gb|AAN45459.2| probable pyruvate formate lyase activating enzyme 2 [Shigella
flexneri 2a str. 301]
gi|73857931|gb|AAZ90638.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
sonnei Ss046]
gi|110617356|gb|ABF06023.1| probable pyruvate formate lyase activating enzyme 2 [Shigella
flexneri 5 str. 8401]
gi|157076779|gb|ABV16487.1| glycyl-radical enzyme activating protein family [Escherichia coli
E24377A]
gi|218354398|emb|CAV01179.1| pyruvate formate lyase II activase [Escherichia coli 55989]
gi|306905775|gb|EFN36301.1| glycyl-radical enzyme activating protein family [Escherichia coli
W]
gi|315063287|gb|ADT77614.1| pyruvate formate lyase II activase [Escherichia coli W]
gi|320201554|gb|EFW76132.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B]
gi|323380650|gb|ADX52918.1| glycyl-radical enzyme activating protein family [Escherichia coli
KO11]
gi|324115499|gb|EGC09440.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli E1167]
gi|331062062|gb|EGI33985.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli TA271]
Length = 292
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|260858070|ref|YP_003231961.1| pyruvate formate lyase II activase [Escherichia coli O26:H11 str.
11368]
gi|257756719|dbj|BAI28221.1| pyruvate formate lyase II activase [Escherichia coli O26:H11 str.
11368]
gi|323155511|gb|EFZ41690.1| glycyl-radical enzyme activating family protein [Escherichia coli
EPECa14]
Length = 292
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 57/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDVPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|34484012|emb|CAE11008.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Wolinella succinogenes]
Length = 363
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C DT + + QL +L++ G K+ R +TGGEP+++
Sbjct: 61 NRCNFRCQYCMPDTPEDFFDAEED--IPLAQLLELVKVAIDEGVKKIR---ITGGEPMIR 115
Query: 99 VDVPLIQAL---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
D+ A +IA+ TNG K E + +
Sbjct: 116 KDLDWFIAQIYLYNPEIDIALTTNGFYLRHFAKSLKEAGLKRINVSLDSLKPERVALISK 175
Query: 156 VNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLA 188
NV P+ G D + ++ P+ G +E +L
Sbjct: 176 KNVLPQILEGIDLALSVGLIVKLNMVPLKGVNEDEIPDLI 215
>gi|15804548|ref|NP_290589.1| pyruvate formate lyase II activase [Escherichia coli O157:H7
EDL933]
gi|157163429|ref|YP_001460747.1| pyruvate formate lyase II activase [Escherichia coli HS]
gi|168748741|ref|ZP_02773763.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4113]
gi|168761656|ref|ZP_02786663.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4501]
gi|168775203|ref|ZP_02800210.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4196]
gi|168799457|ref|ZP_02824464.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC508]
gi|188493956|ref|ZP_03001226.1| glycyl-radical enzyme activating protein family [Escherichia coli
53638]
gi|194438344|ref|ZP_03070435.1| glycyl-radical enzyme activating protein family [Escherichia coli
101-1]
gi|195937602|ref|ZP_03082984.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
EC4024]
gi|208813297|ref|ZP_03254626.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4045]
gi|208820425|ref|ZP_03260745.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4042]
gi|253775409|ref|YP_003038240.1| pyruvate formate lyase II activase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163902|ref|YP_003047010.1| pyruvate formate lyase II activase [Escherichia coli B str. REL606]
gi|254795957|ref|YP_003080794.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
TW14359]
gi|260870672|ref|YP_003237074.1| pyruvate formate lyase II activase [Escherichia coli O111:H- str.
11128]
gi|261226424|ref|ZP_05940705.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256824|ref|ZP_05949357.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
FRIK966]
gi|291285372|ref|YP_003502190.1| Glycyl-radical enzyme activating protein family [Escherichia coli
O55:H7 str. CB9615]
gi|293472270|ref|ZP_06664680.1| pyruvate formate lyase activating enzyme [Escherichia coli B088]
gi|12518871|gb|AAG59154.1|AE005626_9 probable pyruvate formate lyase activating enzyme 2 [Escherichia
coli O157:H7 str. EDL933]
gi|13364357|dbj|BAB38304.1| probable pyruvate formate lyase activating enzyme 2 [Escherichia
coli O157:H7 str. Sakai]
gi|157069109|gb|ABV08364.1| glycyl-radical enzyme activating protein family [Escherichia coli
HS]
gi|187769121|gb|EDU32965.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4196]
gi|188016774|gb|EDU54896.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4113]
gi|188489155|gb|EDU64258.1| glycyl-radical enzyme activating protein family [Escherichia coli
53638]
gi|189367890|gb|EDU86306.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4501]
gi|189378026|gb|EDU96442.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC508]
gi|194422781|gb|EDX38777.1| glycyl-radical enzyme activating protein family [Escherichia coli
101-1]
gi|208734574|gb|EDZ83261.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4045]
gi|208740548|gb|EDZ88230.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4042]
gi|209752068|gb|ACI74341.1| PTS system fructose-like IIB component 2 [Escherichia coli]
gi|209752070|gb|ACI74342.1| PTS system fructose-like IIB component 2 [Escherichia coli]
gi|209752072|gb|ACI74343.1| PTS system fructose-like IIB component 2 [Escherichia coli]
gi|209752074|gb|ACI74344.1| PTS system fructose-like IIB component 2 [Escherichia coli]
gi|209752076|gb|ACI74345.1| PTS system fructose-like IIB component 2 [Escherichia coli]
gi|242379488|emb|CAQ34303.1| probable pyruvate formate lyase 2 activating enzyme [Escherichia
coli BL21(DE3)]
gi|253326453|gb|ACT31055.1| glycyl-radical enzyme activating protein family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975803|gb|ACT41474.1| pyruvate formate lyase II activase [Escherichia coli B str. REL606]
gi|253979960|gb|ACT45630.1| pyruvate formate lyase II activase [Escherichia coli BL21(DE3)]
gi|254595357|gb|ACT74718.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
TW14359]
gi|257767028|dbj|BAI38523.1| pyruvate formate lyase II activase [Escherichia coli O111:H- str.
11128]
gi|290765245|gb|ADD59206.1| Glycyl-radical enzyme activating protein family [Escherichia coli
O55:H7 str. CB9615]
gi|291321364|gb|EFE60804.1| pyruvate formate lyase activating enzyme [Escherichia coli B088]
gi|320190946|gb|EFW65596.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. EC1212]
gi|320639126|gb|EFX08762.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
G5101]
gi|320644518|gb|EFX13579.1| pyruvate formate lyase II activase [Escherichia coli O157:H- str.
493-89]
gi|320649842|gb|EFX18357.1| pyruvate formate lyase II activase [Escherichia coli O157:H- str. H
2687]
gi|320655192|gb|EFX23141.1| pyruvate formate lyase II activase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660816|gb|EFX28266.1| pyruvate formate lyase II activase [Escherichia coli O55:H7 str.
USDA 5905]
gi|320665934|gb|EFX32960.1| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
LSU-61]
gi|323943631|gb|EGB39738.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli H120]
gi|323959279|gb|EGB54940.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli H489]
gi|323969704|gb|EGB64988.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli TA007]
gi|326338030|gb|EGD61860.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. 1044]
gi|326342675|gb|EGD66448.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
str. 1125]
Length = 292
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|323182054|gb|EFZ67464.1| glycyl-radical enzyme activating family protein [Escherichia coli
1357]
Length = 279
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|320173030|gb|EFW48252.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC
74-1112]
Length = 292
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQCYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|312136355|ref|YP_004003692.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanothermus fervidus DSM 2088]
gi|311224074|gb|ADP76930.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanothermus fervidus DSM 2088]
Length = 230
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 32/156 (20%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
+F F+GC L +C +C + G +V+ I+ + + +
Sbjct: 21 IF--FAGCPL-----------RCPYCHNPELL---KNGKDIDVES----IKRKISSSKDF 60
Query: 85 GRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW-----ICVSPKA 137
VL+GGEPL Q +++ G + ++TNG + + KA
Sbjct: 61 IDAVVLSGGEPLFQEKEVEEILKHAYSLGLKTKLDTNGIYPKKLNSIIKYLDYVSLDVKA 120
Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ K V +V S + + + L
Sbjct: 121 PFTKYKEIIG--KNVGSEVKESMKI---LNKSKVYL 151
>gi|294793985|ref|ZP_06759122.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 3_1_44]
gi|294455555|gb|EFG23927.1| Fe-S oxidoreductase of MoaA family protein [Veillonella sp. 3_1_44]
Length = 201
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 22/128 (17%)
Query: 99 VDVPLIQALNKRGFEIAVETNGTI--EPPQGIDWICVSPKAGCDLKIKGGQ-ELKLVFPQ 155
+ N ++ +ETNGTI + W K L + ++ V +
Sbjct: 68 DTFDKRERPNNSPYDFNIETNGTIVPSFQRENVWFTYDYKTPSSLAEESMNIDIFKVATE 127
Query: 156 VNV------SPENYIGFD--------FERFSLQPMDGPFLEENTNLAISYCF--QNPKWR 199
++ SPE+ + + P+ G + I+Y R
Sbjct: 128 RDLIKFVVGSPEDLDCMRRIISKYPTVAQIYVSPVWGQIEAAS---IINYMKTYNLQNVR 184
Query: 200 LSVQTHKF 207
+Q HKF
Sbjct: 185 FQLQIHKF 192
>gi|254166872|ref|ZP_04873726.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aciduliprofundum boonei T469]
gi|289596191|ref|YP_003482887.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aciduliprofundum boonei T469]
gi|197624482|gb|EDY37043.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aciduliprofundum boonei T469]
gi|289533978|gb|ADD08325.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aciduliprofundum boonei T469]
Length = 227
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 18/113 (15%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF GCN +C FC + + + D + + I+
Sbjct: 19 VATVF--TYGCNF-----------RCPFCHN-YTLVTEPPTALLSEDNVIEEIKGL---- 60
Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
+ +TGGEP + D+ + ++TNGT +S
Sbjct: 61 KGWIDGICITGGEPTIHKDLKDFVKKLSEIAPVKLDTNGTEPSTLIEVIPYIS 113
>gi|312868229|ref|ZP_07728429.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
parasanguinis F0405]
gi|311095974|gb|EFQ54218.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
parasanguinis F0405]
Length = 264
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F + G G F F GC +C++C T R
Sbjct: 19 ESFGAVDGPGIR------FIVFLQGC-----------QMRCQYCHNPDTWAMETNKSR-- 59
Query: 67 VDQLADLIEEQWITGEK--EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
+ D++EE E ++GGE LLQ+D + L + G ++T
Sbjct: 60 ERTVDDVLEEALRYRGFWGEKGGITVSGGEALLQIDFLIALFTKAQELGIHCTLDTC 116
>gi|167748466|ref|ZP_02420593.1| hypothetical protein ANACAC_03210 [Anaerostipes caccae DSM 14662]
gi|167652458|gb|EDR96587.1| hypothetical protein ANACAC_03210 [Anaerostipes caccae DSM 14662]
Length = 230
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCN + C FC + + L +
Sbjct: 21 TVF--TGGCNFF-----------CPFCHNA----ELISPRKEEPGLLEKDLLAFLRKRRG 63
Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
++GGEPLL LI+ + + G+ + ++TNG+
Sbjct: 64 ILDGVCISGGEPLLHTGLSGLIREMKELGYLVKLDTNGSFP 104
>gi|191168939|ref|ZP_03030708.1| glycyl-radical enzyme activating protein family [Escherichia coli
B7A]
gi|193068054|ref|ZP_03049019.1| glycyl-radical enzyme activating protein family [Escherichia coli
E110019]
gi|300819369|ref|ZP_07099567.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 107-1]
gi|300824342|ref|ZP_07104457.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 119-7]
gi|190901026|gb|EDV60806.1| glycyl-radical enzyme activating protein family [Escherichia coli
B7A]
gi|192958674|gb|EDV89112.1| glycyl-radical enzyme activating protein family [Escherichia coli
E110019]
gi|300523148|gb|EFK44217.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 119-7]
gi|300528052|gb|EFK49114.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 107-1]
gi|313648844|gb|EFS13283.1| glycyl-radical enzyme activating family protein [Shigella flexneri
2a str. 2457T]
gi|323167431|gb|EFZ53139.1| glycyl-radical enzyme activating family protein [Shigella sonnei
53G]
Length = 279
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|38704217|ref|NP_312908.2| pyruvate formate lyase II activase [Escherichia coli O157:H7 str.
Sakai]
gi|189010251|ref|ZP_02805886.2| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4076]
gi|189402184|ref|ZP_02780653.2| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4401]
gi|189403090|ref|ZP_02793271.2| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4486]
gi|189404857|ref|ZP_02811825.2| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC869]
gi|208809017|ref|ZP_03251354.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4206]
gi|209397570|ref|YP_002273474.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4115]
gi|217325269|ref|ZP_03441353.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. TW14588]
gi|300902607|ref|ZP_07120582.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 84-1]
gi|300928731|ref|ZP_07144247.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 187-1]
gi|301306407|ref|ZP_07212475.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 124-1]
gi|189001611|gb|EDU70597.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4076]
gi|189357223|gb|EDU75642.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4401]
gi|189362696|gb|EDU81115.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC4486]
gi|189373223|gb|EDU91639.1| glycyl-radical enzyme activating protein family [Escherichia coli
O157:H7 str. EC869]
gi|208728818|gb|EDZ78419.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4206]
gi|209158970|gb|ACI36403.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. EC4115]
gi|217321490|gb|EEC29914.1| glycyl-radical enzyme activating protein [Escherichia coli O157:H7
str. TW14588]
gi|300405335|gb|EFJ88873.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 84-1]
gi|300463256|gb|EFK26749.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 187-1]
gi|300838347|gb|EFK66107.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 124-1]
gi|315253620|gb|EFU33588.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 85-1]
gi|323174307|gb|EFZ59933.1| glycyl-radical enzyme activating family protein [Escherichia coli
LT-68]
gi|323177977|gb|EFZ63561.1| glycyl-radical enzyme activating family protein [Escherichia coli
1180]
Length = 279
Score = 45.3 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|262039026|ref|ZP_06012360.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia
goodfellowii F0264]
gi|261746936|gb|EEY34441.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia
goodfellowii F0264]
Length = 265
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 37/180 (20%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCD------------------TD 53
T G G F GC L +C++C +
Sbjct: 16 TFDGPGIRT-----VVYFKGCPL-----------RCKWCSNPETQKIENEVFYNEKEISP 59
Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRG 111
G ++++ D++ + G L+GGE L+ V+ + + L +
Sbjct: 60 ITGEYPKVAKLMTLNEIFDIVMKDEKFYRNSGGGVTLSGGEILVNVEFAIKLFEKLKEEY 119
Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN-VSPENYIGFDFER 170
A+ET G + + ++ D+K Q+ K N + EN
Sbjct: 120 INTAIETTGYGNYKEFENLAKLTDTVLFDIKHMNSQKHKEYTAVSNELILENLEKLSKWH 179
>gi|94989389|ref|YP_597490.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS9429]
gi|94993280|ref|YP_601379.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS2096]
gi|94542897|gb|ABF32946.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS9429]
gi|94546788|gb|ABF36835.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS2096]
Length = 276
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 36 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQQKVPEQMLTSDGLNTKI 79
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD++ + + + E+ G L+GGE Q D + L++A G A+ET
Sbjct: 80 VGEEKTVDEVIEEVLKDLDFYEESGGGMTLSGGEIFAQFDFALALLKAAKAAGLHTAIET 139
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q + I DLK + V N I + F+
Sbjct: 140 TAFAKHEQFVTLIDYVDFIYTDLKHYNQLRHQKVTGVRNDLIIKNIHYAFQ 190
>gi|283782364|ref|YP_003373119.1| radical SAM domain-containing protein [Pirellula staleyi DSM 6068]
gi|283440817|gb|ADB19259.1| Radical SAM domain protein [Pirellula staleyi DSM 6068]
Length = 518
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 24/156 (15%)
Query: 30 SGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GC L G + C C + GG++ L ++
Sbjct: 82 QGCPLDCGLCTEHEQHTCVGLVEVTSSCNLTCPMCYAS--SAPGGKHTSVDDCKLAIDRL 139
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPK 136
+ E C L+GGEP + ++ ++ + + + TNG S
Sbjct: 140 VAVEGRADVCQLSGGEPTIHPELETIVDYALAQPIDYVMINTNGIRFA---------SDP 190
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
A + + + +++ F ++ E + E+
Sbjct: 191 ALVEFIRQRRERMEIYFQLDGLNDEIALKLRGEKLL 226
>gi|45358143|ref|NP_987700.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus maripaludis S2]
gi|44920900|emb|CAF30136.1| Radical-activating enzyme [Methanococcus maripaludis S2]
Length = 268
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 35/178 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN+ G Q+ T +++ + ++ +
Sbjct: 52 AVVF--LSGCNMKCGYCQNYEYI-------------TTNISEMTAEEVFNSMDLMFAEA- 95
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICV 133
V++GGEP LQ + + L + +GF + ++TNGT ++I +
Sbjct: 96 -----LVISGGEPTLQPEAVLELAKIAKGKGFPVKLDTNGTNPDLVEKLISNNLLNYIAI 150
Query: 134 SPKAGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186
KAG + K +E+K ++ + F R + P MD +EE
Sbjct: 151 DVKAGFNNYEKITGYKKEIKENILKIIDLCKKEGIFVECRTTFIPELMDESDIEEIAK 208
>gi|148243988|ref|YP_001220226.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidiphilium cryptum JF-5]
gi|146400551|gb|ABQ29084.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidiphilium cryptum JF-5]
Length = 235
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 26/142 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F TL G A F R GC L +CR+C + + +
Sbjct: 15 FTTLDFPGRLA--ATFFLR--GCPL-----------RCRYCH----NVDLQARRGTSPLR 55
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGI 128
+ + V +GGEP + + +I+ + GFE+A+ T G
Sbjct: 56 WLEALTWLDQRRGLLDS-VVFSGGEPTMDRCLEQMIRDVRSLGFEVALHTAGVSPKRLER 114
Query: 129 D-----WICVSPKAGCDLKIKG 145
W+ + KA +
Sbjct: 115 VLPMLQWVGLDIKAPFGDYARI 136
>gi|222152350|ref|YP_002561525.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
0140J]
gi|222113161|emb|CAR40596.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
uberis 0140J]
Length = 257
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 31/172 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKKAPEEMLTADCKGHET 60
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVET 118
G + V ++ + + + E+ G L+GGE +++ G A+ET
Sbjct: 61 VGEQKTVSEVMEEVLKDRDFYEESGGGVTLSGGEIFAQYPFAKAILKEAKANGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+P D I DLK + V N + I + F +
Sbjct: 121 TAYAKPEHFKDLIQYVDFIYTDLKHYDSLRHRQVTGVTNNLIVDNIHYAFSQ 172
>gi|170022036|ref|YP_001726990.1| pyruvate formate lyase II activase [Escherichia coli ATCC 8739]
gi|169756964|gb|ACA79663.1| glycyl-radical enzyme activating protein family [Escherichia coli
ATCC 8739]
Length = 292
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLQLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|117626221|ref|YP_859544.1| pyruvate formate lyase II activase [Escherichia coli APEC O1]
gi|237702989|ref|ZP_04533470.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp.
3_2_53FAA]
gi|115515345|gb|ABJ03420.1| pyruvate formate-lyase 2 activating enzyme [Escherichia coli APEC
O1]
gi|226902926|gb|EEH89185.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp.
3_2_53FAA]
Length = 315
Score = 45.3 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 221
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 222 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 257
>gi|254039214|ref|ZP_04873264.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 1_1_43]
gi|331644689|ref|ZP_08345808.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli H736]
gi|396299|gb|AAC43058.1| ORF_o315 [Escherichia coli str. K-12 substr. MG1655]
gi|226838650|gb|EEH70679.1| pyruvate formate-lyase 2 activating enzyme [Escherichia sp. 1_1_43]
gi|331036151|gb|EGI08387.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli H736]
Length = 315
Score = 44.9 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 212
>gi|159904739|ref|YP_001548401.1| radical SAM domain-containing protein [Methanococcus maripaludis
C6]
gi|159886232|gb|ABX01169.1| Radical SAM domain protein [Methanococcus maripaludis C6]
Length = 336
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 24/179 (13%)
Query: 24 AVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+VF +GCN Q+ + + + + +L +
Sbjct: 74 SVFSIATAGCNFKCKHCQNWEIS--------QSLPEEVPFSELTPEDVVELAKNYL---- 121
Query: 83 KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ----GIDWICVSPK 136
T EP + + K + TNG IE ID + + K
Sbjct: 122 --CEGIAYTYTEPTIFYEFMQETAKLARKHDLFNVMVTNGYIEKEPLKKLEIDAMNIDIK 179
Query: 137 AGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ K EL+ V ++ + I + + P ++ I++
Sbjct: 180 GNSEFYKKICLAELEPVLETCKLAKKLGIHVEITNL-IVPTYN-DNPKDIEFIINFVKD 236
>gi|315925679|ref|ZP_07921888.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315620997|gb|EFV00969.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 262
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 26/115 (22%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------VGIQGTKGGRY 65
G G VF GC+L +C +C T T G
Sbjct: 24 DGTGFRT---VVFM--KGCHL-----------RCAWCSTPESQPFEIQTTAEDQTYGEVM 67
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVET 118
V+++ + + G ++GGE + Q D Q K G A+ET
Sbjct: 68 TVEEVLKEVRKDIPFYFHSGGGMTVSGGEMMAQPDFARCLLQQAQKEGINTAIET 122
>gi|260891246|ref|ZP_05902509.1| pyruvate formate-lyase-activating enzyme [Leptotrichia hofstadii
F0254]
gi|260859273|gb|EEX73773.1| pyruvate formate-lyase-activating enzyme [Leptotrichia hofstadii
F0254]
Length = 272
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 28/162 (17%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-------------------CRFCDT 52
T G G F GC L + + + C C
Sbjct: 13 TFDGPGIRT-----VVYFKGCPLRCLWCSNPETQKLENEFWDYDGSLYKGNKNQCSGC-- 65
Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKR 110
++++ +++ + G L+GGE L+ + L + L +
Sbjct: 66 PAANSLKQVAKDMTLEEVFEIVMKDENFYRNSGGGVTLSGGEILVNSAFAIELFEKLKEE 125
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
A+ET G + ++ D+K Q+ K
Sbjct: 126 YINTAIETTGYGNYKDLENLAKLTDTVLFDIKHLNSQKHKEY 167
>gi|290969198|ref|ZP_06560723.1| putative pyruvate formate-lyase-activating enzyme [Megasphaera
genomosp. type_1 str. 28L]
gi|290780704|gb|EFD93307.1| putative pyruvate formate-lyase-activating enzyme [Megasphaera
genomosp. type_1 str. 28L]
Length = 308
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNK 109
T F G V Q+ + +E++ G L+GGEPL Q D + + +A
Sbjct: 98 TCFANALTVIGEDMTVAQVMEKLEKEDTMFRYSGGGVTLSGGEPLTQADFAMEIFKACKA 157
Query: 110 RGFEIAVETNGTIEPPQGIDWI 131
G+ A+ET G I
Sbjct: 158 NGWNTAIETTGYASEESIRKCI 179
>gi|115525179|ref|YP_782090.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodopseudomonas palustris BisA53]
gi|115519126|gb|ABJ07110.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodopseudomonas palustris BisA53]
Length = 219
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 15/128 (11%)
Query: 28 RFSGCNLWSGREQDRLSAQCRF----CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
R S C+ C + C + + + Q+ +E + +
Sbjct: 14 RLSTCDWPGQLAATVFCQGCPWDCSYCHNPHL-LPVMGEAAWPWAQVLAFLERRRGLLDA 72
Query: 84 EGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIEP-----PQGIDWICVSPKA 137
V +GGEP LQ +P A GF I + T G +DW+ KA
Sbjct: 73 ----VVFSGGEPTLQTALPQAIATVRAMGFRIGLHTGGAYPRRLAGVLPLLDWVGFDVKA 128
Query: 138 GCDLKIKG 145
+ +
Sbjct: 129 PFEDYQRI 136
>gi|45358107|ref|NP_987664.1| MoaA/nifB/pqqE family protein [Methanococcus maripaludis S2]
gi|44920864|emb|CAF30100.1| MoaA/nifB/pqqE family [Methanococcus maripaludis S2]
Length = 336
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 24/183 (13%)
Query: 24 AVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+VF +GCN Q+ + + + + DL +
Sbjct: 74 SVFSIATAGCNFRCKHCQNWEIS--------QSLPEDVPFSELTPEDVVDLAKNYL---- 121
Query: 83 KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ----GIDWICVSPK 136
T EP + + + TNG IE ID + + K
Sbjct: 122 --CEGIAYTYTEPTIFYEFMQETAKIAKNNDLFNVMVTNGYIEKEPLKKLSIDAMNIDIK 179
Query: 137 AGCDLKIKGGQ-ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ K EL+ V ++ + I + + P +++ I++
Sbjct: 180 GNSEFYKKICFAELEPVLETCILAKKLGIHVEITNL-IVPTYN-DNQKDIEFIINFVKDE 237
Query: 196 PKW 198
Sbjct: 238 LGV 240
>gi|331649807|ref|ZP_08350887.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli M605]
gi|331041440|gb|EGI13590.1| pyruvate formate-lyase 2-activating enzyme (PFL-activating enzyme)
(Formate-C-acetyltransferase-activating enzyme 2)
[Escherichia coli M605]
Length = 315
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDAAQARDVVKMNLQRVLEN 221
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCF 193
E R L P EN A+
Sbjct: 222 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLI 257
>gi|313904097|ref|ZP_07837477.1| glycyl-radical enzyme activating protein family [Eubacterium
cellulosolvens 6]
gi|313471246|gb|EFR66568.1| glycyl-radical enzyme activating protein family [Eubacterium
cellulosolvens 6]
Length = 291
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALN--KRGFEIAVETN 119
G D++ D + + E G L+GGEPL+Q D G +ET
Sbjct: 101 GKEMTADEVLDEVLKDRAFYETSGGGITLSGGEPLMQPDFACEILQKAAAAGIHRTIETC 160
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
G + + + D+K+ + K
Sbjct: 161 GYASGENYERVVSLVDELIADVKLMDPDKHK 191
>gi|332105248|gb|EGJ08594.1| pyruvate formate-lyase 2 activating enzyme [Shigella sp. D9]
Length = 315
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 47 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 101
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 102 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 161
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 162 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 212
>gi|262044465|ref|ZP_06017524.1| coenzyme PQQ synthesis protein E [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259038195|gb|EEW39407.1| coenzyme PQQ synthesis protein E [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 380
Score = 44.9 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 18/172 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDF--ARQDKELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A ++
Sbjct: 66 GGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTESKLDAFSEAGLDHIQISFQASDEVL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISY 191
K F Q + D+ F L + L++ L I
Sbjct: 126 NAALAGNKKAFQQKLAMAKAVKARDYPMVLNFVLHRHNIDQLDKIIELCIEL 177
>gi|150389198|ref|YP_001319247.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alkaliphilus metalliredigens QYMF]
gi|149949060|gb|ABR47588.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alkaliphilus metalliredigens QYMF]
Length = 227
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN +C +C + +G N D++ ++++ +
Sbjct: 24 TGGCNF-----------RCGYCHNGEIVNN--QGRTINEDEILGFLKKRKKFIDA----V 66
Query: 89 VLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIE 123
++GGEP L + + GF + ++TNGT
Sbjct: 67 CISGGEPTLQNDLYEFVLQIKDLGFYVKLDTNGTNP 102
>gi|330840063|ref|YP_004414643.1| pyruvate formate-lyase activating enzyme [Selenomonas sputigena
ATCC 35185]
gi|329747827|gb|AEC01184.1| pyruvate formate-lyase activating enzyme [Selenomonas sputigena
ATCC 35185]
Length = 247
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 27/178 (15%)
Query: 1 MKLYSI--KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI 57
M L I E F ++ G G + VF +GC L +C +C
Sbjct: 1 MPLGRIRSVESFGSVDGPGLRYI----VF--LAGCRL-----------RCLYCHNPETW- 42
Query: 58 QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIA 115
+ + + + G V G EPL+Q D L + + G
Sbjct: 43 GAAGAEEKSAEAVLAAALRFRPYWKGGGGITVSGG-EPLVQADFVAGLFRLAKEAGVSTC 101
Query: 116 VETNGTIEPPQGIDW---ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
++T G I S D+K ++ + + + N + ++ + +
Sbjct: 102 LDTAGEPFSRTDDAVLRAIAASDLVLLDIKHIDPEKHEALTGRRNENILDFARYLAKE 159
>gi|302340636|ref|YP_003805842.1| glycyl-radical enzyme activating protein family [Spirochaeta
smaragdinae DSM 11293]
gi|301637821|gb|ADK83248.1| glycyl-radical enzyme activating protein family [Spirochaeta
smaragdinae DSM 11293]
Length = 307
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 55/167 (32%)
Query: 6 IKEIFLTLQ------GEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------- 44
+ IF +Q G G VF F GC L G +
Sbjct: 11 VVNIFK-IQRFSLHDGPGIRT---TVF--FQGCPLRCGWCSNPEGQLKKTRIFYYESLCI 64
Query: 45 ----------------------AQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
A+C C + G + G V + ++
Sbjct: 65 HCGKCISVCPNKAIGPAFETIQARCVGCGECASVCYTGARQVSGTPMTVQDVVEICLADS 124
Query: 79 ITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+ G L+GGEP++ + L++ L A ET G ++
Sbjct: 125 MFYFHSGGGVTLSGGEPVMFSEFSCELLKELKAHNISTAFETCGYVD 171
>gi|238894848|ref|YP_002919582.1| pyrroloquinoline quinone biosynthesis protein PqqE [Klebsiella
pneumoniae NTUH-K2044]
gi|130802|sp|P27507|PQQE_KLEPN RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|809708|emb|CAA41583.1| pqqE [Klebsiella pneumoniae]
gi|238547164|dbj|BAH63515.1| pyrroloquinoline quinone synthesis protein E [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 380
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 18/172 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDF--ARQDKELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A ++
Sbjct: 66 GGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTESKLDAFSEAGLDHIQISFQASDEVL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISY 191
K F Q + D+ F L + L++ L I
Sbjct: 126 NAALAGNKKAFQQKLAMAKAVKARDYPMVLNFVLHRHNIDQLDKIIELCIEL 177
>gi|260655537|ref|ZP_05861025.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Jonquetella anthropi E3_33 E1]
gi|260629985|gb|EEX48179.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Jonquetella anthropi E3_33 E1]
Length = 229
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GCN +C +C + Q + + + + + +
Sbjct: 20 ATVF--TLGCNF-----------RCPWCHNGPLVDQSSD--LLDEEDFFSFLASRKRLLD 64
Query: 83 KEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE 123
V+TGGEP + D+P G ++ ++TNG+
Sbjct: 65 G----VVVTGGEPTIHRDLPEFILRIKDMGLKVKLDTNGSHP 102
>gi|146319321|ref|YP_001199033.1| pyruvate-formate lyase activating enzyme [Streptococcus suis
05ZYH33]
gi|253752352|ref|YP_003025493.1| pyruvate formate-lyase activating enzyme [Streptococcus suis SC84]
gi|253754178|ref|YP_003027319.1| pyruvate formate-lyase activating enzyme [Streptococcus suis P1/7]
gi|253756112|ref|YP_003029252.1| pyruvate formate-lyase activating enzyme [Streptococcus suis BM407]
gi|330833289|ref|YP_004402114.1| pyruvate-formate lyase activating enzyme [Streptococcus suis ST3]
gi|145690127|gb|ABP90633.1| pyruvate-formate lyase activating enzyme [Streptococcus suis
05ZYH33]
gi|251816641|emb|CAZ52282.1| pyruvate formate-lyase activating enzyme [Streptococcus suis SC84]
gi|251818576|emb|CAZ56410.1| pyruvate formate-lyase activating enzyme [Streptococcus suis BM407]
gi|251820424|emb|CAR47083.1| pyruvate formate-lyase activating enzyme [Streptococcus suis P1/7]
gi|292558954|gb|ADE31955.1| pyruvate-formate lyase activating enzyme [Streptococcus suis GZ1]
gi|319758756|gb|ADV70698.1| pyruvate-formate lyase activating enzyme [Streptococcus suis JS14]
gi|329307512|gb|AEB81928.1| pyruvate-formate lyase activating enzyme [Streptococcus suis ST3]
Length = 263
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 24/127 (18%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC+ +C++C
Sbjct: 18 ESFGSVDGPGVR------FVVFMQGCH-----------MRCQYCHNPDTWDLVNPAA--T 58
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
D++ E G+ ++GGE +Q+D + L ++G ++T
Sbjct: 59 ERTAEDVLNEALRFRMFWGKEGGITVSGGEATIQIDFLIALFTLAKEKGIHTTLDTCALT 118
Query: 123 EPPQGID 129
Sbjct: 119 FRKTERY 125
>gi|269215654|ref|ZP_06159508.1| nitrite reductase heme biosynthesis J protein [Slackia exigua ATCC
700122]
gi|269131141|gb|EEZ62216.1| nitrite reductase heme biosynthesis J protein [Slackia exigua ATCC
700122]
Length = 420
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + + + + ++ +I++ + + +
Sbjct: 50 CNLKC--------EHC------YALSDAKRYDQLSTEEAKAMIDDL---ADFGAPVLLFS 92
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
GGEP + V L+Q RG + + TNGT+ P+
Sbjct: 93 GGEPCVRPDLVELMQHAKDRGMRVVISTNGTLITPE 128
>gi|322508437|gb|ADX03891.1| pqqE [Acinetobacter baumannii 1656-2]
Length = 384
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ E+ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFEQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|160902443|ref|YP_001568024.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Petrotoga mobilis SJ95]
gi|160360087|gb|ABX31701.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Petrotoga mobilis SJ95]
Length = 213
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 23/164 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C +C + G + + + ++ V+T
Sbjct: 27 CNL-----------RCPYCHNPELVF--FTGKLVDEENIFSYLKS----RVGVVEGVVIT 69
Query: 92 GGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPKAGCDLKIKG 145
GGEP L + I + GF + ++TNG +D I + K C
Sbjct: 70 GGEPTLQKDLRDFIIKIKDMGFLVKLDTNGHNPKVLNTVIDIVDMIAIDIKTSCQKYKTI 129
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
G ++ +N+ + PM E I
Sbjct: 130 GGNCVILKESLNLLKDFKGDLILRTTLYPPMTTKDDLEEMKSII 173
>gi|299770205|ref|YP_003732231.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
sp. DR1]
gi|298700293|gb|ADI90858.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
sp. DR1]
Length = 384
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ +++GF + T+G G+D I VS +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IEQIIELCLE 173
>gi|224826786|ref|ZP_03699886.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002]
gi|224601006|gb|EEG07189.1| coenzyme PQQ biosynthesis protein E [Lutiella nitroferrum 2002]
Length = 381
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 30 SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
G LW E R +C +C+ + T+ + ++ ++ E E
Sbjct: 13 QGKPLWLSLELTYRCPLKCSWCNNPLDFDKYTEHE-LSTEEWKRVLAE---ARELGALQL 68
Query: 89 VLTGGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
TGGEPL + D+ + A ++ GF + T+G
Sbjct: 69 GFTGGEPLQRPDLEELVAYADELGFYTNLITSG 101
>gi|171186113|ref|YP_001795032.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
V24Sta]
gi|170935325|gb|ACB40586.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
Length = 254
Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G + T FV G +++A+ + + E +
Sbjct: 46 GCNLRCGMCWAWRN-------TSFVLTAGQW---MPPEEVAERLRKIARERGYEQ--VRI 93
Query: 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+GGEPL+ L R + VETNG
Sbjct: 94 SGGEPLIAPRHALAVIDELRDYVFVVETNG 123
>gi|224477500|ref|YP_002635106.1| formate acetyltransferase activating enzyme [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222422107|emb|CAL28921.1| formate acetyltransferase activating enzyme [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 251
Score = 44.5 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 20/119 (16%)
Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G + +F GC +C +C +
Sbjct: 8 VESLGTVDGPGLRYI----IF--TQGC-----------LLRCLYCHNPDTWSLTDAPRKV 50
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTI 122
+ ++L + I G ++GGEPLLQ+ L + L ++T+
Sbjct: 51 SAEELVEEIVPYRPYFSTSGGGVTVSGGEPLLQMPFLEQLFKQLKAEDIHTCIDTSAGC 109
>gi|167039792|ref|YP_001662777.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter sp. X514]
gi|300914963|ref|ZP_07132278.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter sp. X561]
gi|307724883|ref|YP_003904634.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter sp. X513]
gi|166854032|gb|ABY92441.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter sp. X514]
gi|300888687|gb|EFK83834.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter sp. X561]
gi|307581944|gb|ADN55343.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter sp. X513]
Length = 228
Score = 44.5 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 30/157 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ + G + + ++ + E
Sbjct: 19 ATVFI--SGCNFK-----------CPYCHNSYLI--PIREGIRSEKDFFNYLKRRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVS 134
+TGGEP L I+ + F + ++TNG+ D+I +
Sbjct: 64 G----VCITGGEPALWRGLKDFIKNIKDLHFSVKLDTNGSRPQVLEDLIKEELVDYIAMD 119
Query: 135 PKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDF 168
KA + K +++ + V + ++I ++F
Sbjct: 120 IKAPIEKYSIFLKNKKDIDNIQKSVEIIKNSHIDYEF 156
>gi|293608090|ref|ZP_06690393.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|130795|sp|P07782|PQQE_ACICA RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Coenzyme PQQ synthesis protein III; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|38745|emb|CAA29756.1| III protein [Acinetobacter calcoaceticus]
gi|292828663|gb|EFF87025.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 384
Score = 44.5 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ +++GF + T+G G+D I VS +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IEQIIELCLE 173
>gi|317052447|ref|YP_004113563.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfurispirillum indicum S5]
gi|316947531|gb|ADU67007.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfurispirillum indicum S5]
Length = 236
Score = 44.5 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCNL +CR+C + + R DQL + I+ I
Sbjct: 26 TVF--THGCNL-----------RCRYCHNPALVLGQPGRSR--QDQLLEYIDRHQIGA-- 68
Query: 84 EGRYCVLTGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEP 124
+TGGEPL Q ++ + Q L R I ++TNGT+
Sbjct: 69 ----VAITGGEPLFQRELETLLQQLRSRKIRIKLDTNGTLPH 106
>gi|147920772|ref|YP_685422.1| anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent)
activating enzyme [uncultured methanogenic archaeon
RC-I]
gi|56295595|emb|CAH04836.1| pyruvate formate-lyase activating enzyme [uncultured archaeon]
gi|110620818|emb|CAJ36096.1| anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent)
activating enzyme [uncultured methanogenic archaeon
RC-I]
Length = 262
Score = 44.5 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 20/104 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ VF R GC +C +C ++ G + +++ I++
Sbjct: 28 VLTVFFR--GCPF-----------RCPYCANPQ-FLEPDSGEPTDTERVIAEIDKARNFI 73
Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV--ETNGTIE 123
+ V +GGEPL+Q A + +G + V +TNG
Sbjct: 74 DG----VVFSGGEPLMQFAAFKTIAAHAKGLGLLVGAQTNGAYP 113
>gi|218281042|ref|ZP_03487618.1| hypothetical protein EUBIFOR_00177 [Eubacterium biforme DSM 3989]
gi|218217691|gb|EEC91229.1| hypothetical protein EUBIFOR_00177 [Eubacterium biforme DSM 3989]
Length = 380
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL C +C + + Y + + I E + K+
Sbjct: 172 TGGCNLK-----------CPYCHSKDLVYLKEN--MYPIAN--EKISEYLKSHHKDLEGI 216
Query: 89 VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
++GGEPL+ + +Q K ++I + TNG
Sbjct: 217 YISGGEPLMHEGILSFLQYAKKLDYKIKLHTNGMF 251
>gi|301324930|ref|ZP_07218489.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 78-1]
gi|300848181|gb|EFK75941.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 78-1]
Length = 279
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 55/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 11 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 65
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 66 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRF 125
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G +ET G + + + + DLKI + + V
Sbjct: 126 LQRLRLWGVSCTIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 176
>gi|71280570|ref|YP_267606.1| pyrroloquinoline quinone biosynthesis protein PqqE [Colwellia
psychrerythraea 34H]
gi|71146310|gb|AAZ26783.1| coenzyme PQQ synthesis protein E [Colwellia psychrerythraea 34H]
Length = 378
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 29/184 (15%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E C +C G N +Q D++ + +
Sbjct: 12 PLWLLAELTYDCPLHCPYCSNP--TELGDTKDELNTEQWLDVLTQ---ARAMGAVQLGFS 66
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEPLL+ D+ +++ + GF + T+G I ++ K LK+ G ++
Sbjct: 67 GGEPLLRKDLEQMVKHSRELGFYTNLITSG----------IGLTEKRIAKLKVAGLDHIQ 116
Query: 151 LVFPQVNVSPENYI---GFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW-------RL 200
+ F + + I G FE+ M + + +++ RL
Sbjct: 117 ISFQGADPEMNDIIAGRGNAFEQKF--KMAQSVKAQGYPMVLNFVISKQNISQVEDIMRL 174
Query: 201 SVQT 204
S Q
Sbjct: 175 SCQL 178
>gi|194337605|ref|YP_002019399.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Pelodictyon phaeoclathratiforme BU-1]
gi|194310082|gb|ACF44782.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Pelodictyon phaeoclathratiforme BU-1]
Length = 245
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN +C +C + GG + + + V+
Sbjct: 40 GCNF-----------RCPYCHNPELVDPVRSGGNHQIP--FHDVVRLVERNRSCLDAVVV 86
Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQG 127
TGGEP + +P + K G + ++TNG+
Sbjct: 87 TGGEPAMHESLPESLRTFRKLGLLVKLDTNGSYPDMID 124
>gi|299143773|ref|ZP_07036853.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518258|gb|EFI41997.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 243
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 28/144 (19%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD------FVGIQGTKGGRYN 66
+ G G A+F F GCNL C FC + Y+
Sbjct: 15 VDGPGNRC---AIF--FQGCNLN-----------CSFCHNPETIKIIHSEEENDDIKFYS 58
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD+L + +++ +GGE + + + + I V+TNG I+
Sbjct: 59 VDELFEKVKKIRPF----IVGITTSGGECTIHHKFLIQFFKKIKTLNLNILVDTNGLIDL 114
Query: 125 PQGIDWICVSPKAGCDLKIKGGQE 148
V G L IK +E
Sbjct: 115 SNENMKELVELTDGFMLDIKALEE 138
>gi|223985163|ref|ZP_03635255.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
12042]
gi|223962872|gb|EEF67292.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
12042]
Length = 278
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 47/184 (25%)
Query: 1 MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD----------------- 41
MK I I F + G G A+F F GC L +
Sbjct: 1 MKAL-INRIIPFSNVDGPGNRC---AIF--FQGCPLHCAYCHNPETWRICDHCGQCVAGC 54
Query: 42 -------------RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
++C CD K + L D + E +
Sbjct: 55 PAGALTLHAGKVVWEESRCVGCDQCIHVCPHHASCKVSELTPEALLDRVAETFPF----I 110
Query: 86 RYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
+ ++GGE +L + + G +++NG ++ Q + + + D+K
Sbjct: 111 QGITVSGGECMLYADFLTEFFRLVKAAGKTCLIDSNGILDFRQYPELLQLCDGVMLDMKA 170
Query: 144 KGGQ 147
Sbjct: 171 IDDD 174
>gi|303247407|ref|ZP_07333680.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio fructosovorans JJ]
gi|302491321|gb|EFL51210.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio fructosovorans JJ]
Length = 222
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 25/130 (19%)
Query: 23 VAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
AV FCR GC +C +C + + D L L Q +
Sbjct: 13 AAVLFCR--GCP-----------WRCPYCHNATLRESDGEADEAFADTLPWLESRQGLLD 59
Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSP 135
V +GGEP Q +P + A+ GF+I + T G DW+
Sbjct: 60 A-----VVFSGGEPTAQPGLPAAMTAVRDLGFKIGLHTAGMFPDALADALPYCDWVGCDI 114
Query: 136 KAGCDLKIKG 145
KA +
Sbjct: 115 KAPAAAYGRI 124
>gi|182417703|ref|ZP_02949022.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
5521]
gi|237669148|ref|ZP_04529132.1| glycyl-radical enzyme activating family protein [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378427|gb|EDT75958.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
5521]
gi|237657496|gb|EEP55052.1| glycyl-radical enzyme activating family protein [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 310
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 72/245 (29%), Gaps = 62/245 (25%)
Query: 1 MKLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------Q 46
M+ +SI G G VF GC L + S
Sbjct: 17 MQRFSIN------DGPGLRT---IVF--LKGCPLSCIWCSNPESQNKNSQVMFNIKNCTA 65
Query: 47 CRFC-----------DTDFVGIQGTK------------------GGRYNVDQLADLIEEQ 77
C C D+ + + G V + ++++
Sbjct: 66 CGNCKEICSVHAIDIDSKYRIDRSKCINCGKCIEECYSEALVMCGKEMTVYDVIKELKKE 125
Query: 78 WITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP---QGIDWIC 132
+ L+GGEPL+Q + + L++A G+ +ET G + + W+
Sbjct: 126 DVIFRCSKGGVTLSGGEPLMQPEFSIELLKACKSLGWHTTMETTGYADESVIEDVMPWVD 185
Query: 133 VSPKAGCDLKIKGGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFL--EENTNLAI 189
+ + + V ++ + + + E + P+ F E + N
Sbjct: 186 LLLMDFKTIDESMHFKYTGVSNKIILENAKKIVNLVPEVIARVPVIPEFNADESSINAIA 245
Query: 190 SYCFQ 194
Y +
Sbjct: 246 KYVKE 250
>gi|304314308|ref|YP_003849455.1| MoaA related protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587767|gb|ADL58142.1| MoaA related protein [Methanothermobacter marburgensis str.
Marburg]
Length = 227
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +CR+C Y+ +++AD + I+ E+ ++
Sbjct: 22 CNL-----------RCRYC-----FFTPRNCREYDAERIADRV--LRISSEEGIDSVLIA 63
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
GGEP LQ D+P R + + TNGT
Sbjct: 64 GGEPTLQRDLPEFTEALSRDLHVTISTNGTRWEI 97
>gi|239906066|ref|YP_002952805.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
magneticus RS-1]
gi|239795930|dbj|BAH74919.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
magneticus RS-1]
Length = 320
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 37 GREQDRLSAQCRFC-D---TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
G E +C C D + + G G ++ + ++ + G +G
Sbjct: 93 GGEIGIDRVRCDLCGDCVTSCYAGSMTIVGRYLTAGEVMEEVDRDRKFYAESGGGVTFSG 152
Query: 93 GEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
GEP Q D + ++A RG AVET G
Sbjct: 153 GEPTSQPDFLLSCLRAAKARGLHTAVETCGHAPWET 188
>gi|307637459|gb|ADN79909.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
908]
Length = 321
Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 29/178 (16%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPTTPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMVKGLKDAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
LK + S + + M G +E L + Y S+Q
Sbjct: 135 DALKNALEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR-----SIQI 183
>gi|226951887|ref|ZP_03822351.1| coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein
III) [Acinetobacter sp. ATCC 27244]
gi|294649144|ref|ZP_06726585.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone
biosynthesis protein E) [Acinetobacter haemolyticus ATCC
19194]
gi|226837427|gb|EEH69810.1| coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein
III) [Acinetobacter sp. ATCC 27244]
gi|292824942|gb|EFF83704.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinone
biosynthesis protein E) [Acinetobacter haemolyticus ATCC
19194]
Length = 384
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + +++++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFEVLDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTQQRISHLKHVGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCQLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|289580100|ref|YP_003478566.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC
43099]
gi|289529653|gb|ADD04004.1| molybdenum cofactor biosynthesis protein A [Natrialba magadii ATCC
43099]
Length = 341
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + + + D++ + E + TGGEP+L+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPMDPQDDEMETDDVVRFLEVAAEFDVDAVKFTGGEPMLRQ 78
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS---PKAGCDLKIKGGQEL 149
D+ I E+++ TNGT P G+D + VS +
Sbjct: 79 DLTEIIERTPEQMEVSLTTNGTFLPGRAEELVDAGLDRVNVSQDALDPEDFAAVTKSGAY 138
Query: 150 KLVFPQVNVSPE---NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
V V+ + E + + + F + + +N L +Q
Sbjct: 139 DKVLEGVDAALEAGLDPVKLNMVVF-------EHTAGYVPEMVDHVAENEG--LQLQL 187
>gi|77461382|ref|YP_350889.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
fluorescens Pf0-1]
gi|77385385|gb|ABA76898.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens Pf0-1]
Length = 379
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q I+ E +
Sbjct: 13 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELSTEQW---IKVFREAREMGAAQLGFS 67
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI+ + GF + T+G + G+D I +S +A +
Sbjct: 68 GGEPLVRQDLAELIREARQLGFYTNLITSGIGLTEQKISDFKKAGLDHIQISFQASDEQV 127
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 128 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 178
>gi|330985835|gb|EGH83938.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 389
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|298489172|ref|ZP_07007192.1| Coenzyme PQQ synthesis protein E [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156309|gb|EFH97409.1| Coenzyme PQQ synthesis protein E [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 389
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|257483070|ref|ZP_05637111.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289650652|ref|ZP_06481995.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. aesculi str. 2250]
gi|331011695|gb|EGH91751.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 389
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|71737663|ref|YP_276810.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|83288390|sp|Q48CT3|PQQE_PSE14 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|71558216|gb|AAZ37427.1| coenzyme PQQ biosynthesis protein E [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326441|gb|EFW82494.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. glycinea str. B076]
gi|320331587|gb|EFW87525.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330872310|gb|EGH06459.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 389
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTKEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|262279087|ref|ZP_06056872.1| coenzyme PQQ synthesis protein E [Acinetobacter calcoaceticus
RUH2202]
gi|262259438|gb|EEY78171.1| coenzyme PQQ synthesis protein E [Acinetobacter calcoaceticus
RUH2202]
Length = 384
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ +++GF + T+G G+D I VS +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ I C +
Sbjct: 123 NDALAGSKYAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IEQIIELCLE 173
>gi|308233496|ref|ZP_07664233.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM
15829]
gi|328943744|ref|ZP_08241209.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
15829]
gi|327491713|gb|EGF23487.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
15829]
Length = 257
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 7 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRFKPEPM 50
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALN 108
G +VD++ + + + E+ G L+GGEPL Q +++
Sbjct: 51 LDPETKKPSCVGEEKSVDEIIEDVVKDIDFYEESGGGLTLSGGEPLAQFGFARAILKRAK 110
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+ A+ET ++ + ++ + DLK Q+ + + N I + F
Sbjct: 111 QEHIHTALETTAYVDHQKFVEILNYVDFIYTDLKHYDPQKHRSITAVDNELIIKNISYAF 170
Query: 169 ER 170
Sbjct: 171 TH 172
>gi|114568857|ref|YP_755537.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Maricaulis maris MCS10]
gi|114339319|gb|ABI64599.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Maricaulis maris MCS10]
Length = 239
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 26/137 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F TL + G++A GC L +C +C + + +
Sbjct: 17 FTTLD----YPGQMAAVVFLQGCPL-----------RCVYCHNPDLLPVHAD-TEIDGRE 60
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+A ++E+ + V +GGEPL + + GF++ + T+G
Sbjct: 61 IAARLKERRGLLQA----VVFSGGEPLVQSGLAAAMDHVRSLGFKVGLHTSGISPDRFQR 116
Query: 129 -----DWICVSPKAGCD 140
DW+ KA
Sbjct: 117 LRDRVDWVGFDIKAPFS 133
>gi|330954903|gb|EGH55163.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae Cit 7]
Length = 389
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|307326965|ref|ZP_07606156.1| coenzyme PQQ biosynthesis protein E [Streptomyces violaceusniger Tu
4113]
gi|306887501|gb|EFN18496.1| coenzyme PQQ biosynthesis protein E [Streptomyces violaceusniger Tu
4113]
Length = 368
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 17/91 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC L C +C + + + + +++ + GE + L
Sbjct: 17 GCPL-----------HCPYCSNPLELV--RRSRELSTAEWTEVMRQ---AGEFGVVHTHL 60
Query: 91 TGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
+GGEPLL ++ A G + T+G
Sbjct: 61 SGGEPLLRPDLAEIVIAAESAGIYTQLVTSG 91
>gi|330979897|gb|EGH78197.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 389
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|313496741|gb|ADR58107.1| Coenzyme PQQ synthesis protein E [Pseudomonas putida BIRD-1]
Length = 386
Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G + +Q ++ E E +
Sbjct: 20 PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAE---AREMGAAQIGFS 74
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + G+ + T+G G+D I +S +A +
Sbjct: 75 GGEPLVRQDLAELIGEARRLGYYTNLITSGIGLTEARIADFKKAGLDHIQISFQASDEQV 134
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + E + I C
Sbjct: 135 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIEKIDRIIELCIA 185
>gi|317473349|ref|ZP_07932644.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
3_2_56FAA]
gi|316899185|gb|EFV21204.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
3_2_56FAA]
Length = 303
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 60/206 (29%), Gaps = 52/206 (25%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50
F T G+G VF F GC L Q+ +C C
Sbjct: 11 FSTHDGDGIRT---TVF--FKGCPLSCVWCQNPEGISLRRRPLYFKNRCIHCKMCVEESV 65
Query: 51 ---------------DTDFVGIQ----------GTKGGRYNVDQLADLIEEQWITGEKEG 85
D+ Y+V ++ + I + + +
Sbjct: 66 SGGMKFRGDKLFMNIDSPEDWEHLIELCPSGALAMDSREYSVKEVMEEI-RKDMVFYRHD 124
Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
L+GGEPL Q + + +++ K G A+ET+ E + D KI
Sbjct: 125 GGVTLSGGEPLHQSEFALEILKQCKKEGIHTAIETSLYAEQEILRKLLPYLDLIYADFKI 184
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFE 169
+ K N + I + E
Sbjct: 185 ADVERHKKYVGVPNQKIKENIKYLLE 210
>gi|78778108|ref|YP_394423.1| hypothetical protein Suden_1914 [Sulfurimonas denitrificans DSM
1251]
gi|78498648|gb|ABB45188.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
1251]
Length = 221
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 42/212 (19%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GC E + CDT + + + +L+
Sbjct: 6 FGC-----EESTPNGEKIVGCDTIYAVNREHFLQNWIPITSAHELLNILNFYDLPFAVDV 60
Query: 89 VLTGGEPLLQVDVPLI----QALNKRGFEIAVETNG------TIEPPQGIDWICVSPKAG 138
VLTGGEPL+ + P+ + L +RG +I ETNG +S K
Sbjct: 61 VLTGGEPLIYANEPIFIEFLEKLYERGHKITFETNGTLSVDFERHVIYKKCIFALSVKLS 120
Query: 139 CDLKIKGGQELKLVFPQVNV-SPENYIGFDFE----------------------RFSLQP 175
+ + V + + + E + F + + P
Sbjct: 121 NSNEAFAKRVKGEVISNIALNAKEVFFKFSIDADSINAALEDEILEITSFSPKTKVYCMP 180
Query: 176 MDG--PFLEENTNLAISYCFQNPKWRLSVQTH 205
+ G +E NT + +C + S + H
Sbjct: 181 LGGTKEEVEANTEPLVEFCKAK-GYNFSDRLH 211
>gi|237802427|ref|ZP_04590888.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331025284|gb|EGI05340.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 389
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|266619761|ref|ZP_06112696.1| putative radical SAM [Clostridium hathewayi DSM 13479]
gi|288868665|gb|EFD00964.1| putative radical SAM [Clostridium hathewayi DSM 13479]
Length = 328
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R ++ G + ++ ++ E K+ +L
Sbjct: 16 CNLNCWFCGQRKNS---------ALRDGKESMALKTEEWLGIVNELDAAAGKKPS-VMLW 65
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPL+ + L++RG+ + + TNG
Sbjct: 66 GGEPLMSPCFDEIASTLHERGYRVGIVTNG 95
>gi|256833419|ref|YP_003162146.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Jonesia denitrificans DSM 20603]
gi|256686950|gb|ACV09843.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Jonesia denitrificans DSM 20603]
Length = 232
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 22/126 (17%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G+ A GC +C +C + I K G +Q+ + ++
Sbjct: 27 GKFAAVLFLQGCPW-----------RCTYCHN-YSIIDAKKPGVIPWEQVVHTLTQRQGL 74
Query: 81 GEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI-----DWICVS 134
+ V +GGEP Q+ V + + + GF + T G DW+ +
Sbjct: 75 LDG----VVFSGGEPTRQIAVVDAARRVKEMGFAVGFHTGGQYPKRIESLLPLLDWVGLD 130
Query: 135 PKAGCD 140
KA +
Sbjct: 131 IKAPSE 136
>gi|330891270|gb|EGH23931.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. mori str. 301020]
Length = 389
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMARAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|253999234|ref|YP_003051297.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylovorus
sp. SIP3-4]
gi|253985913|gb|ACT50770.1| coenzyme PQQ biosynthesis protein E [Methylovorus sp. SIP3-4]
Length = 395
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89
LW E R C FC T ++ ++L I+ +
Sbjct: 18 PLWLLAEVTYRCPLHCAFC------YNPTDYDKHTQNELTTEQWIQALRDARKMGALQLG 71
Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
++GGEPLL+ D+ +++ + G+ + T+G
Sbjct: 72 ISGGEPLLRDDIEDIVREARQLGYYSNLITSG 103
>gi|113473997|ref|YP_720058.1| hypothetical protein Tery_0077 [Trichodesmium erythraeum IMS101]
gi|113473998|ref|YP_720059.1| hypothetical protein Tery_0078 [Trichodesmium erythraeum IMS101]
gi|113473999|ref|YP_720060.1| hypothetical protein Tery_0079 [Trichodesmium erythraeum IMS101]
gi|110165045|gb|ABG49585.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
gi|110165046|gb|ABG49586.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
gi|110165047|gb|ABG49587.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 72
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 143 IKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
++KLV ++ + + + LQP + L + R
Sbjct: 2 WTRASKIKLVIETGKELEFYSKILLVKNKTPVFLQPESY-NRDFTLPLVQKLLREYSHCR 60
Query: 200 LSVQTHKFIGIR 211
LS+Q HK++GI+
Sbjct: 61 LSIQLHKYLGIK 72
>gi|313201322|ref|YP_004039980.1| coenzyme pqq biosynthesis protein e [Methylovorus sp. MP688]
gi|312440638|gb|ADQ84744.1| coenzyme PQQ biosynthesis protein E [Methylovorus sp. MP688]
Length = 394
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89
LW E R C FC T ++ ++L I+ +
Sbjct: 17 PLWLLAEVTYRCPLHCAFC------YNPTDYDKHTQNELTTEQWIQALRDARKMGALQLG 70
Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
++GGEPLL+ D+ +++ + G+ + T+G
Sbjct: 71 ISGGEPLLRDDIEDIVREARQLGYYSNLITSG 102
>gi|89893163|ref|YP_516650.1| pyruvate-formate lyase-activating enzyme [Desulfitobacterium
hafniense Y51]
gi|89332611|dbj|BAE82206.1| pyruvate-formate lyase-activating enzyme [Desulfitobacterium
hafniense Y51]
Length = 310
Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 12/148 (8%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G V+ + +E+ + + G +GGEPL+Q + ++ +R + +ET
Sbjct: 117 GKPITVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGNFVAETLKEARRRRLKTTIETC 176
Query: 120 GTIEPPQG---IDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF----- 171
G + + + + QE ++ + N + F +
Sbjct: 177 GYADWSTMERVCQHLTSLIMDIKCMDPEKHQEYTGASNELILDNFNKLCEHFPKLPKLIR 236
Query: 172 -SLQPMDGPFLEENTNLAISYCFQNPKW 198
+ P EE+ + P
Sbjct: 237 TPVVPGFN-DREEDIREIAEFVKDKPNV 263
>gi|239909106|ref|YP_002955848.1| ribonucleoside-triphosphate reductase activating enzyme
[Desulfovibrio magneticus RS-1]
gi|239798973|dbj|BAH77962.1| ribonucleoside-triphosphate reductase activating enzyme
[Desulfovibrio magneticus RS-1]
Length = 221
Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWI 79
GR+ F GCNL +C C + +E +
Sbjct: 23 GRLTAVLFFGGCNL-----------RCPHCHNAALAWTPQAGAAPLTEKAVRRFVEARRR 71
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ V+TGGEP L +P L A+ G + V++NG
Sbjct: 72 WLDG----LVITGGEPTLTPGMPGLAAAVAASGLPVKVDSNGLRP 112
>gi|188996400|ref|YP_001930651.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931467|gb|ACD66097.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 227
Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
FS CN +C +C + + D + +
Sbjct: 25 FSKCN-----------MRCPYCYNPEIVFESEGK-----DLSENKVISFLRKRVGLLEGV 68
Query: 89 VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
VL GGEP L + + + GF I ++TNG+ +
Sbjct: 69 VLCGGEPTLYKDLIGFAKKIKDLGFLIKLDTNGSNPYVVNVLIKN 113
>gi|126460429|ref|YP_001056707.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
11548]
gi|126250150|gb|ABO09241.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 261
Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G + T FV + G +++A ++E R +
Sbjct: 53 GCNLRCGMCWAWRN-------TSFVL---SGGVWMAPEEVAARLDEIAKARGF--RQVRI 100
Query: 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+GGEPL+ L A + VETNG
Sbjct: 101 SGGEPLIAPRHLLEVADLLSKYIFIVETNG 130
>gi|210134970|ref|YP_002301409.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
P12]
gi|226704820|sp|B6JM01|MOAA_HELP2 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|210132938|gb|ACJ07929.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
P12]
Length = 321
Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 27/176 (15%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T G +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLDFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
I L+ E+A+ TNG + D S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
LK + S + + M +E L + Y R+ +
Sbjct: 135 DALKNALEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR---RIQI 183
>gi|32363221|sp|P59748|PQQE_ENTIT RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|30841335|gb|AAP34382.1| PqqE [Kluyvera intermedia]
Length = 374
Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDF--SQQKKELTTEQWIEVFRQARAMGSVQ---LGFS 64
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A +
Sbjct: 65 GGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTAKKLDAFADAGLDHIQISFQASDETL 124
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C +
Sbjct: 125 NAALAGSKKAF-QQKLEMAKAVKAHGYPMVLNFVLHRHNIDQIDKIIDLCIE 175
>gi|59891639|gb|AAX10036.1| putative Fe-S oxidoreductase [Pseudomonas fluorescens]
Length = 425
Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q I+ E +
Sbjct: 59 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELTTEQW---IKVFREAREMGAAQLGFS 113
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI K GF + T+G + G+D I +S +A +
Sbjct: 114 GGEPLVRQDLAELIAEARKLGFYTNLITSGIGLTEQKISDFKKAGLDHIQISFQASDEQV 173
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 174 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 224
>gi|307823472|ref|ZP_07653701.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
gi|307735457|gb|EFO06305.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
Length = 366
Score = 44.1 bits (103), Expect = 0.012, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
+ +C FC D++G + R +V LAD + E G K Y GEP+L
Sbjct: 48 CNHRCTFCAVDYIGYK---AQRLDVKILADRLAEMGRLGVKSIMYA--GEGEPMLHKEIN 102
Query: 102 PLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCDLKIKGGQELKL--- 151
+++ G +++ TNGT+ + WI VS AG + K
Sbjct: 103 EIVRLTVDAGIDVSFTTNGTLMNSRFVEQSLPLVSWIKVSLNAGSAENYAAIHQTKASDF 162
Query: 152 -------VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ E + L P EE T LA + C
Sbjct: 163 DLVLNNLRRAVAHKKAEQLSCTLGAQILLLP---ENREEVTALA-AICRD 208
>gi|303248585|ref|ZP_07334841.1| glycyl-radical enzyme activating protein family [Desulfovibrio
fructosovorans JJ]
gi|302490026|gb|EFL49948.1| glycyl-radical enzyme activating protein family [Desulfovibrio
fructosovorans JJ]
Length = 320
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
RF+ + C C T + G G ++ D +
Sbjct: 88 IRFA-----ANGTVVIDREACDLCGECVATCYAGSMTIVGRYLTPGEVLDEVCRDAKFYT 142
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
G +GGEP LQ+D ++ RG A+ET G
Sbjct: 143 VSGGGVTFSGGEPTLQLDFLRACLREAKARGLHTAIETCGHAPWTS 188
>gi|302873840|ref|YP_003842473.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|307689915|ref|ZP_07632361.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|302576697|gb|ADL50709.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
Length = 467
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 22/161 (13%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQ 105
C +C + + D I+ + + +GGEPL+ D + L++
Sbjct: 146 CIYC------CNSSGSRIEDELSFNDWIKVIDEAADLGVETILFSGGEPLMYPDFIKLVK 199
Query: 106 ALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
G V TNGT GID++ +S A + K P+V
Sbjct: 200 RTKDNGIYPIVSTNGTLISEETAKQLSEAGIDFVHLSMSAANEELYDSIIGYKGNLPKVK 259
Query: 158 VSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISYCFQN 195
+ + + + L P++ +EE + +C +N
Sbjct: 260 AAIKALKDNNIYIRLKVVLMPVNIKHIEE----LLDFCIEN 296
>gi|260887409|ref|ZP_05898672.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sputigena
ATCC 35185]
gi|260862878|gb|EEX77378.1| pyruvate formate-lyase 1-activating enzyme [Selenomonas sputigena
ATCC 35185]
Length = 253
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 25/170 (14%)
Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E F ++ G G + VF +GC L +C +C
Sbjct: 15 VESFGSVDGPGLRYI----VF--LAGCRL-----------RCLYCHNPETW-GAAGAEEK 56
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+ + + + G V G EPL+Q D L + + G ++T G
Sbjct: 57 SAEAVLAAALRFRPYWKGGGGITVSGG-EPLVQADFVAGLFRLAKEAGVSTCLDTAGEPF 115
Query: 124 PPQGIDW---ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
I S D+K ++ + + + N + ++ + +
Sbjct: 116 SRTDDAVLRAIAASDLVLLDIKHIDPEKHEALTGRRNENILDFARYLAKE 165
>gi|301345077|ref|ZP_07225818.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii AB056]
Length = 197
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|260550419|ref|ZP_05824630.1| coenzyme PQQ synthesis protein E [Acinetobacter sp. RUH2624]
gi|260406525|gb|EEX00007.1| coenzyme PQQ synthesis protein E [Acinetobacter sp. RUH2624]
Length = 384
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|15611772|ref|NP_223423.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
J99]
gi|7674140|sp|Q9ZL75|MOAA_HELPJ RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|4155260|gb|AAD06280.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
J99]
Length = 321
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 29/178 (16%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPTTPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTI-------EPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFSLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
LK + S + + M G +E L + Y S+Q
Sbjct: 135 DALKNTLEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR-----SIQI 183
>gi|254478005|ref|ZP_05091389.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
gi|214036009|gb|EEB76699.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
Length = 292
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 20/169 (11%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C +CD + + K V+ + I ++T
Sbjct: 13 CNL-----------RCSYCD--YSNKRRDKKSNLLVEDVERFILAMSDYMNLG--EIMIT 57
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI---CVSPKAGCDLKIKGGQ 147
GGEP L ++ I + K I++ TNGT+ + I W+ V+ D
Sbjct: 58 GGEPFLLSNIEYWILTMKKYSPNISILTNGTLIDSEQIRWLKKHSVTVHISIDSLNSEYS 117
Query: 148 ELKLVFPQVNVSPE-NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
EL + +S + +++ L E+ + I Y +N
Sbjct: 118 ELYRGGHEKLLSILSKFEKENYKNLKLNITMSRANIEDVHKIICYAKKN 166
>gi|184158118|ref|YP_001846457.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii ACICU]
gi|294841773|ref|ZP_06786456.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
sp. 6014059]
gi|226704987|sp|B2I0I5|PQQE_ACIBC RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|183209712|gb|ACC57110.1| predicted Fe-S oxidoreductase [Acinetobacter baumannii ACICU]
gi|323518059|gb|ADX92440.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii TCDC-AB0715]
Length = 384
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|163816598|ref|ZP_02207962.1| hypothetical protein COPEUT_02789 [Coprococcus eutactus ATCC 27759]
gi|158448298|gb|EDP25293.1| hypothetical protein COPEUT_02789 [Coprococcus eutactus ATCC 27759]
Length = 280
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 51/149 (34%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----------- 56
E F + G G R VF GC +C++C
Sbjct: 15 ESFGAVDGPGI---RFVVF--LQGC-----------KMRCKYCHNPETWNLVTDYSKLYS 58
Query: 57 --------------------IQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGE 94
+ KG + DL+++ G ++GGE
Sbjct: 59 DETSDAEREELEKKIEENTKLLKDKGVKIEARTPEDLLKQALRYKPYWKNGGGITVSGGE 118
Query: 95 PLLQVD--VPLIQALNKRGFEIAVETNGT 121
LLQ+D + + G ++T G
Sbjct: 119 ALLQMDFLIEFFKLAKAEGIHTTIDTAGN 147
>gi|146321525|ref|YP_001201236.1| pyruvate-formate lyase activating enzyme [Streptococcus suis
98HAH33]
gi|145692331|gb|ABP92836.1| pyruvate-formate lyase activating enzyme [Streptococcus suis
98HAH33]
Length = 263
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 22/126 (17%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRY 65
E F ++ G G F F GC+ +C++C
Sbjct: 18 ESFGSVDGPGVR------FVVFMQGCH-----------MRCQYCHNPDTWDLVNPAATER 60
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+ + + + KEG ++GGE +Q+D + L ++G ++T
Sbjct: 61 TAEDVLNEALRFCMFWGKEG-GITVSGGEATIQIDFLIALFTLAKEKGIHTTLDTCALTF 119
Query: 124 PPQGID 129
Sbjct: 120 RKTERY 125
>gi|218961206|ref|YP_001740981.1| putative enzyme with radical SAM domain [Candidatus Cloacamonas
acidaminovorans]
gi|167729863|emb|CAO80775.1| putative enzyme with radical SAM domain [Candidatus Cloacamonas
acidaminovorans]
Length = 293
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 26/165 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+FC + Q ++ L +++++Q + T
Sbjct: 87 CNLT-----------CKFCQNWEISQQEYPTRYVAIEDLIEIVKQQK------DQQIAFT 129
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ---- 147
EPL+ + L + +I + TNG I + + V D+K +
Sbjct: 130 YTEPLMWYEYILDFSAKAPEIDIVLVTNGYINKEPWRNILKVVKAVNIDIKSYRDEFYRQ 189
Query: 148 ----ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
+L ++ + ++ E + + + P EE +LA
Sbjct: 190 LCGGKLDIILANIIIAKEMDVHIELTNLII-PGYNNSEEELNDLA 233
>gi|301513618|ref|ZP_07238855.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii AB058]
Length = 384
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|295094964|emb|CBK84055.1| pyruvate formate-lyase 1-activating enzyme [Coprococcus sp.
ART55/1]
Length = 280
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 51/149 (34%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG----------- 56
E F + G G R VF GC +C++C
Sbjct: 15 ESFGAVDGPGI---RFVVF--LQGC-----------KMRCKYCHNPETWNLVTDYSKLYS 58
Query: 57 --------------------IQGTKGGRYNVDQLADLIEEQWITGEK--EGRYCVLTGGE 94
+ KG + DL+++ G ++GGE
Sbjct: 59 DETSDAEREELEKKIEENTKLLKDKGVKIEARTPEDLLKQALRYKPYWKNGGGITVSGGE 118
Query: 95 PLLQVD--VPLIQALNKRGFEIAVETNGT 121
LLQ+D + + G ++T G
Sbjct: 119 ALLQMDFLIEFFKLAKAEGIHTTIDTAGN 147
>gi|38637902|ref|NP_942876.1| activase of anaerobic class III ribonucleotide reductase [Ralstonia
eutropha H16]
gi|32527240|gb|AAP85990.1| activase of anaerobic class III ribonucleotide reductase [Ralstonia
eutropha H16]
Length = 239
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 41/128 (32%), Gaps = 26/128 (20%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR+A VFC GC G +C G R +
Sbjct: 36 GRLAAVVFC--QGCPWRCG-----------YCHNP-----GLLDARAPSSIAWADVLAFL 77
Query: 79 ITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWIC 132
+ V +GGEP L I + RGFE+A+ T G +DWI
Sbjct: 78 QARQGLLDGVVFSGGEPTLQGALAGAIADVQARGFEVALHTAGMYPDRLPAILPQLDWIG 137
Query: 133 VSPKAGCD 140
+ KA
Sbjct: 138 LDLKAPLH 145
>gi|4127321|emb|CAA10042.1| NrdG protein [Ralstonia eutropha H16]
Length = 256
Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 41/128 (32%), Gaps = 26/128 (20%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR+A VFC GC G +C G R +
Sbjct: 53 GRLAAVVFC--QGCPWRCG-----------YCHNP-----GLLDARAPSSIAWADVLAFL 94
Query: 79 ITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWIC 132
+ V +GGEP L I + RGFE+A+ T G +DWI
Sbjct: 95 QARQGLLDGVVFSGGEPTLQGALAGAIADVQARGFEVALHTAGMYPDRLPAILPQLDWIG 154
Query: 133 VSPKAGCD 140
+ KA
Sbjct: 155 LDLKAPLH 162
>gi|289624772|ref|ZP_06457726.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|330871198|gb|EGH05907.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 389
Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARCLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|218551057|ref|YP_002384848.1| pyruvate formate lyase II activase [Escherichia fergusonii ATCC
35469]
gi|218358598|emb|CAQ91246.1| pyruvate formate lyase II activase [Escherichia fergusonii ATCC
35469]
Length = 292
Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---EVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRASGGGVTLSGGEVLMQAEFATRF 138
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 139 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 189
>gi|113473996|ref|YP_720057.1| hypothetical protein Tery_0076 [Trichodesmium erythraeum IMS101]
gi|110165044|gb|ABG49584.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 72
Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 143 IKGGQELKLVFP---QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
++KLV ++ + + + LQP + L + R
Sbjct: 2 WTRASKIKLVIETGKELEFYSKILLVKNKTPVFLQPESY-NRDFTLPLVQKLLQEYSHCR 60
Query: 200 LSVQTHKFIGIR 211
LS+Q HK++GI+
Sbjct: 61 LSIQLHKYLGIK 72
>gi|223934026|ref|ZP_03625980.1| (Formate-C-acetyltransferase)-activating enzyme [Streptococcus suis
89/1591]
gi|223897315|gb|EEF63722.1| (Formate-C-acetyltransferase)-activating enzyme [Streptococcus suis
89/1591]
Length = 182
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 24/117 (20%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E F ++ G G F F GC+ +C++C
Sbjct: 18 ESFGSVDGPGVR------FVVFMQGCH-----------MRCQYCHNPDTWDLVNPAA--T 58
Query: 67 VDQLADLIEEQWITGEKEGR--YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
D++ E G+ ++GGE +Q+D + L ++G ++T
Sbjct: 59 ERTAEDVLNEALRFRMFWGKEGGITVSGGEATIQIDFLIALFTLAKEKGIHTTLDTC 115
>gi|330010617|ref|ZP_08306843.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. MS 92-3]
gi|328534442|gb|EGF61037.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. MS 92-3]
Length = 380
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 18/172 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDF--ARQDKELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A ++
Sbjct: 66 GGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTESKLDAFSEAGLDHIQISFQASDEVL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISY 191
K F Q + D+ F L + L++ L I
Sbjct: 126 NAALAGNKKAFQQKLTMAKAVKARDYPMVLNFVLHRHNIDQLDKIIELCIEL 177
>gi|152970364|ref|YP_001335473.1| pyrroloquinoline quinone biosynthesis protein PqqE [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|166989888|sp|A6T9H2|PQQE_KLEP7 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|150955213|gb|ABR77243.1| Pyrroloquinolinquinone Synthase E [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 380
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 18/172 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDF--ARQDKELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A ++
Sbjct: 66 GGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTESKLDAFSEAGLDHIQISFQASDEVL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISY 191
K F Q + D+ F L + L++ L I
Sbjct: 126 NAALAGNKKAFQQKLTMAKAVKARDYPMVLNFVLHRHNIDQLDKIIELCIEL 177
>gi|317472003|ref|ZP_07931335.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Anaerostipes sp. 3_2_56FAA]
gi|316900407|gb|EFV22389.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Anaerostipes sp. 3_2_56FAA]
Length = 158
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCN + C FC + + L +
Sbjct: 21 TVF--TGGCNFF-----------CPFCHNA----ELISPRKEEPGLLEKDLLAFLRKRRG 63
Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
++GGEPLL LI+ + + G+ + ++TNG+
Sbjct: 64 ILDGVCISGGEPLLHTGLSGLIREMKELGYLVKLDTNGSFP 104
>gi|239502592|ref|ZP_04661902.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii AB900]
gi|260555008|ref|ZP_05827229.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii ATCC
19606]
gi|260411550|gb|EEX04847.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii ATCC
19606]
Length = 384
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|226330724|ref|ZP_03806242.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198]
gi|225201519|gb|EEG83873.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198]
Length = 215
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VP 102
+C +C G VD+L G +GGE +LQ +
Sbjct: 1 MRCLYCHNRDTW-DTHGGQIVTVDELMKEAVTYRHFMNASGGGVTASGGEAILQAEFVRD 59
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
+A K ++TNG +
Sbjct: 60 WFRACQKENIHTCLDTNGFVRR 81
>gi|169795962|ref|YP_001713755.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii AYE]
gi|213157303|ref|YP_002319348.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
AB0057]
gi|215483421|ref|YP_002325634.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
AB307-0294]
gi|294838033|ref|ZP_06782716.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
sp. 6013113]
gi|294857813|ref|ZP_06795582.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
sp. 6013150]
gi|301595350|ref|ZP_07240358.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii AB059]
gi|226704985|sp|B7H2Y0|PQQE_ACIB3 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|226704986|sp|B7I6M8|PQQE_ACIB5 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|226704989|sp|B0V494|PQQE_ACIBY RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|169148889|emb|CAM86760.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
III) [Acinetobacter baumannii AYE]
gi|213056463|gb|ACJ41365.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
AB0057]
gi|213988930|gb|ACJ59229.1| coenzyme PQQ biosynthesis protein E [Acinetobacter baumannii
AB307-0294]
Length = 384
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLITSGMGLTEQRISHLKQAGLDHIQISFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|152985021|ref|YP_001348665.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
aeruginosa PA7]
gi|150960179|gb|ABR82204.1| coenzyme PQQ biosynthesis protein E [Pseudomonas aeruginosa PA7]
Length = 370
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G + IE E +
Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLEF--AREGAELGTAEW---IEVFRQARELGAAQLGFS 58
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPLL Q LI+A GF + T+G G+D + +S +A +
Sbjct: 59 GGEPLLRQDLAELIEAGRGLGFYTNLITSGIGLDEARLARFAEAGLDHVQISFQAADEEV 118
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ F Q ++ + L + +N I C +
Sbjct: 119 NNLLAGSRKAFAQ-KLAMARAVKAHGYPMVLNFVTHRHNIDNIERIIQLCIE 169
>gi|55378104|ref|YP_135954.1| molybdenum cofactor biosynthesis protein A [Haloarcula marismortui
ATCC 43049]
gi|55230829|gb|AAV46248.1| molybdenum cofactor biosynthesis protein A [Haloarcula marismortui
ATCC 43049]
Length = 360
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 29/181 (16%)
Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
DR + C +C DT G + D + +E + E TGGE
Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMEAQDDELTADTIVAFLE---VAAEFGVDSVKFTGGE 73
Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS---PKAGCDLKIK 144
P+L+ D+ I E+++ TNGT P G++ + VS + ++
Sbjct: 74 PMLREDLEEIVRRAPDEMEVSMTTNGTFLPGRAPDLVDAGLERVNVSQDALDSEAFAELT 133
Query: 145 GGQELKLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
V V + +P G + + +NP L +Q
Sbjct: 134 QSGAYDRVLEGVEAALDAGLEPVKLNMVVFEPTAG-----YVPKMVDHVAENPG--LQLQ 186
Query: 204 T 204
Sbjct: 187 L 187
>gi|225389257|ref|ZP_03758981.1| hypothetical protein CLOSTASPAR_03003 [Clostridium asparagiforme
DSM 15981]
gi|225044671|gb|EEG54917.1| hypothetical protein CLOSTASPAR_03003 [Clostridium asparagiforme
DSM 15981]
Length = 274
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 30/189 (15%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL C FC + + G + +L
Sbjct: 68 FGCNLR-----------CPFCQNHEISMAGRESA-AAAMTPEELAARARALAGNGNIGVA 115
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL+ + + + + G + V TNG++ + + V+ DLK
Sbjct: 116 FTYNEPLVGWEYVRDTARLVRRLGMKTVVVTNGSVTDLVLDEILPVADAMNIDLKGFRES 175
Query: 148 ELKLVFPQVNVSPENYIGFD-FERFSL----QPMDGPFLEENTNLAISYCFQN------- 195
+ + + L P + EE LA N
Sbjct: 176 YYRKLGGDLETVKHFISRAAGACHVELTTLIVPGENDSDEEMEELAAWVASLNPEIPLHV 235
Query: 196 ----PKWRL 200
P+WR+
Sbjct: 236 TRFFPRWRM 244
>gi|255523841|ref|ZP_05390805.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
gi|255512403|gb|EET88679.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
Length = 300
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 57/202 (28%), Gaps = 52/202 (25%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFC-------- 50
++ G G +F F GC L + + +C C
Sbjct: 12 YSIHDGPGIRT---TIF--FKGCPLKCWWCHNPETQNPKHEIMFFEERCTGCGICAKRCP 66
Query: 51 ------DTDFVGIQGTK-------------------GGRYNVDQLADLIEEQWITGEKEG 85
+ K G V +L I + + ++ G
Sbjct: 67 QNAISIKEGHSVVDEEKCALCGKCTDFCPNTAREYVGKDVTVSELMKEIMKDEVFYDESG 126
Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
+GGEPL+ +D +++ ++G V+T+G + + D+K
Sbjct: 127 GGVTFSGGEPLIHIDFLNEVLKKCKEKGIHTTVDTSGCVPWESLEKILDKVDLFLYDIKF 186
Query: 144 KGGQELKLVFPQVNVSPENYIG 165
++ N + +
Sbjct: 187 MDNEKHIKYIGSENTNILENLK 208
>gi|160946140|ref|ZP_02093351.1| hypothetical protein PEPMIC_00102 [Parvimonas micra ATCC 33270]
gi|158447663|gb|EDP24658.1| hypothetical protein PEPMIC_00102 [Parvimonas micra ATCC 33270]
Length = 281
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 51/172 (29%), Gaps = 38/172 (22%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-------------------------- 46
+ G G ++F GCN + + +
Sbjct: 16 VDGPGNRT---SIF--LQGCNFNCFYCHNPETIRHCINCMECIPSCPTKSLKNVNGKIVW 70
Query: 47 ----CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--D 100
C CD + + + + +E R ++GGE LQ
Sbjct: 71 NDKTCINCDECIRVCKHLSSPKIYNWTVEETVERIKKNMPF-IRGITVSGGECTLQHTFL 129
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
L + K G V+TNG I + D++ VS D+K +E +
Sbjct: 130 TSLFTEVRKLGLTCFVDTNGGIPLKRLPDFVEVSDAFMLDIKAFDNEEHLFI 181
>gi|296109167|ref|YP_003616116.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus infernus ME]
gi|295433981|gb|ADG13152.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanocaldococcus infernus ME]
Length = 228
Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ + SGCN +C +C ++ V + ++
Sbjct: 16 KASTVIFLSGCNF-----------RCSYCHNLENILKIKHS--ITVKEFLKRVDPLLTEA 62
Query: 82 EKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP 125
V++GGEP L + + L + G+ + ++TNGT
Sbjct: 63 ------IVISGGEPTLQEEIIELAREAKDLGYLVKLDTNGTRPEI 101
>gi|307265925|ref|ZP_07547474.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919094|gb|EFN49319.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 228
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 30/157 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCN C +C ++ + G + + ++++ E
Sbjct: 19 ATVFI--SGCNFK-----------CPYCHNSYLI--PIREGIRSEKDFFNYLKKRANLIE 63
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVS 134
+TGGEP L I+ + F + ++TNG+ D+I +
Sbjct: 64 G----VCITGGEPTLWRGLKNFIKNIKDLHFSVKLDTNGSRPQVLEDLIKGELVDYIAMD 119
Query: 135 PKAGCD---LKIKGGQELKLVFPQVNVSPENYIGFDF 168
KA + + +K +++ + V + ++I ++F
Sbjct: 120 IKAPIEKYGIFLKNKKDIDNIQKSVEIIKNSHIDYEF 156
>gi|297538387|ref|YP_003674156.1| coenzyme PQQ biosynthesis protein E [Methylotenera sp. 301]
gi|297257734|gb|ADI29579.1| coenzyme PQQ biosynthesis protein E [Methylotenera sp. 301]
Length = 409
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89
LW E R C FC T ++ ++L I+ +
Sbjct: 33 PLWLLAEVTYRCPLHCAFC------YNPTDYDKHTQNELTTEQWIQALRDARKMGAIQLG 86
Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
++GGEPLL+ D+ ++ K G+ + T+G
Sbjct: 87 ISGGEPLLRDDIEDIVIEARKLGYYSNLITSG 118
>gi|218780153|ref|YP_002431471.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfatibacillum alkenivorans AK-01]
gi|218761537|gb|ACL04003.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfatibacillum alkenivorans AK-01]
Length = 230
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 17/96 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCN C +C + T + + +
Sbjct: 24 TAGCNFK-----------CPYCHNPELLSFST-----AQVIKNNWVMSFLKERKGFLDGV 67
Query: 89 VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
V+TGGEP L + + A+ GFE+ ++TNG+
Sbjct: 68 VITGGEPTLHKDLMDFMAAIKDMGFELKLDTNGSRP 103
>gi|134046095|ref|YP_001097581.1| radical SAM domain-containing protein [Methanococcus maripaludis
C5]
gi|132663720|gb|ABO35366.1| Radical SAM domain protein [Methanococcus maripaludis C5]
Length = 336
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 50/183 (27%), Gaps = 24/183 (13%)
Query: 24 AVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+VF +GCN Q+ + + + + +L +
Sbjct: 74 SVFSIATAGCNFKCKHCQNWEIS--------QSLPEEVPFSELTPEDVVELAKNYL---- 121
Query: 83 KEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ----GIDWICVSPK 136
T EP + + K + TNG IE ID + + K
Sbjct: 122 --CEGIAYTYTEPTIFYEFMQETAKLAKKHDLFNVMVTNGYIEKEPLKKLEIDAMNIDIK 179
Query: 137 AGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ K EL+ V ++ + I + + P + I++
Sbjct: 180 GNSEFYKKICLAELEPVLETCRLAKKLGIHIEITNLVV-PTYN-DNPKYIESIINFVKDE 237
Query: 196 PKW 198
Sbjct: 238 LGV 240
>gi|288935351|ref|YP_003439410.1| coenzyme PQQ biosynthesis protein E [Klebsiella variicola At-22]
gi|288890060|gb|ADC58378.1| coenzyme PQQ biosynthesis protein E [Klebsiella variicola At-22]
Length = 380
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 18/172 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQE--KELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A ++
Sbjct: 66 GGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTESKLDAFSEAGLDHIQISFQASDEVL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISY 191
K F Q D+ F L + L++ L I
Sbjct: 126 NAALAGNKKAFQQKLAMARAVKARDYPMVLNFVLHRHNIDQLDKIIELCIEL 177
>gi|206577759|ref|YP_002238372.1| coenzyme PQQ biosynthesis protein E [Klebsiella pneumoniae 342]
gi|290509402|ref|ZP_06548773.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. 1_1_55]
gi|226704991|sp|B5XX58|PQQE_KLEP3 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|206566817|gb|ACI08593.1| coenzyme PQQ biosynthesis protein E [Klebsiella pneumoniae 342]
gi|289778796|gb|EFD86793.1| coenzyme PQQ biosynthesis protein E [Klebsiella sp. 1_1_55]
Length = 380
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 18/172 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQE--KELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A ++
Sbjct: 66 GGEPLTRKDLPELIRAARDLGFYTNLITSGIGLTESKLDAFSEAGLDHIQISFQASDEVL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLAISY 191
K F Q D+ F L + L++ L I
Sbjct: 126 NAALAGNKKAFQQKLAMARAVKARDYPMVLNFVLHRHNIDQLDKIIELCIEL 177
>gi|254255532|ref|ZP_04948848.1| radical SAM domain protein [Burkholderia dolosa AUO158]
gi|124901269|gb|EAY72019.1| radical SAM domain protein [Burkholderia dolosa AUO158]
Length = 240
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 41/130 (31%), Gaps = 25/130 (19%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR+A VF SGC C +C + + R D I
Sbjct: 24 GRLACVVFV--SGCP-----------WHCHYCHNPHLRM----RNRCADPAKWDAILAWL 66
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID-----WIC 132
T V GGEPL++ +P ++ GF IA+ T G WI
Sbjct: 67 GTRAGLLDAVVFCGGEPLVERHLPGMMAQARALGFSIALHTGGAYPDRLSQCLPLIEWIG 126
Query: 133 VSPKAGCDLK 142
KA
Sbjct: 127 FDVKAPFAQY 136
>gi|66047898|ref|YP_237739.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. syringae B728a]
gi|75500308|sp|Q4ZMC1|PQQE_PSEU2 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|63258605|gb|AAY39701.1| Radical SAM [Pseudomonas syringae pv. syringae B728a]
Length = 389
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMARAVKRHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|225163748|ref|ZP_03726049.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
bacterium TAV2]
gi|224801658|gb|EEG19953.1| (Formate-C-acetyltransferase)-activating enzyme [Opitutaceae
bacterium TAV2]
Length = 264
Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 32/128 (25%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G +F GC L +C +C +
Sbjct: 16 DGPGIRT---TLF--LKGCPL-----------RCLWCHNPESMSPKPQYAAPVRPDDPPQ 59
Query: 62 --GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVE 117
G ++L LI + + G L+GGEP Q L++A ++
Sbjct: 60 LYGYTTTPEKLLPLICKDRAWYDATGGGITLSGGEPAFQPRFTEALLRAARAENIHTCLD 119
Query: 118 TNGTIEPP 125
T+G PP
Sbjct: 120 TSGHAPPP 127
>gi|302186015|ref|ZP_07262688.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. syringae 642]
Length = 389
Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMARAVKRHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|255321817|ref|ZP_05362967.1| molybdenum cofactor biosynthesis protein A [Campylobacter showae
RM3277]
gi|255300921|gb|EET80188.1| molybdenum cofactor biosynthesis protein A [Campylobacter showae
RM3277]
Length = 322
Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
R + +C++C T F R N+ +L + ++ + +TGGEPLL+
Sbjct: 20 RCNFRCKYCMPKTPFSWE-----PRENLLSFEELFLFVKVCLDEGVKKIRITGGEPLLRK 74
Query: 100 DVPLIQAL---NKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCDLKIK---GG 146
D+ A+ + ++A+ TNG + G+ I +S + K K
Sbjct: 75 DLDKFIAMINEHSPDVDLAITTNGFMLKHYAKALKNAGLKRINMSLDSLKTEKAKFLAQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSL 173
L V ++ + E + +L
Sbjct: 135 SVLHEVLAGLDAALEAGLKVKLNTVAL 161
>gi|197286357|ref|YP_002152229.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
gi|194683844|emb|CAR44964.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
Length = 288
Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 60/207 (28%), Gaps = 44/207 (21%)
Query: 5 SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQ---------------------- 40
SI +I F + G G R+A+F GCNL
Sbjct: 7 SINKILPFSCVDGPGN---RLAIF--LQGCNLRCKNCHNPYTMGICDNCGDCIATCPQQA 61
Query: 41 --------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
+ S +C CDT + + + D + ++G
Sbjct: 62 LSLQNGVVNWNSHRCEQCDTC-IQQCPRQSSPMTLTYTVDELIAITRKYAAFINGVTVSG 120
Query: 93 GE--PLLQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
GE L + +A+ R +++NGT+ A DLK
Sbjct: 121 GESTLQLPFLIDYFKAIKAAPDLRHLTCLIDSNGTLSLNGWQKIAPFMDGAMIDLKSWSE 180
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSL 173
+ + + N + I + E L
Sbjct: 181 ETHIYLTGRSNQRIKKSIKWLSEHNLL 207
>gi|317484368|ref|ZP_07943287.1| glycyl-radical enzyme activating family protein [Bilophila
wadsworthia 3_1_6]
gi|316924376|gb|EFV45543.1| glycyl-radical enzyme activating family protein [Bilophila
wadsworthia 3_1_6]
Length = 312
Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 51/166 (30%), Gaps = 55/166 (33%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50
++ G G VF GC L + S +C C
Sbjct: 19 YSVHDGPGIRT---IVF--LKGCPLSCKWCSNPESQASHPQVAYNKGRCIGCHRCIKACE 73
Query: 51 -DTDFVGIQGTK---------------------------GGRYNVDQLADLIEEQWITGE 82
D V GT G VDQ+ +E+ +
Sbjct: 74 HDAITVNEDGTLSLDRGKCDVCKTLDCAHACPAQGMIIYGENKTVDQILKEVEKDALFYA 133
Query: 83 KEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
+ G L+GGEPL+ D +PL++ R + A+ET G I
Sbjct: 134 RSGGGMTLSGGEPLMHADIALPLLREARHRRIKTAIETCGCIPWDT 179
>gi|124027074|ref|YP_001012394.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
gi|123977768|gb|ABM80049.1| Fe-S oxidoreductase [Hyperthermus butylicus DSM 5456]
Length = 264
Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 31/178 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL F +G + D+ A+ + R L
Sbjct: 50 GCNLRCRFCWAWR----------FTWTGYGRGVLLSPDEAAERLMRL--ARRTRVRQVRL 97
Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+GGEP + + +++A+ G +ETNG + + + + ++
Sbjct: 98 SGGEPTVGWEHLLEVMEAVTGEGLHFVLETNGIL--IGAYEELARRLASFHGAGVEVRVS 155
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ-----NPKWRLS 201
+K S E + R P L + Y + P LS
Sbjct: 156 IK------GTSEEEFYMLTGAR----PEAWRLQLRALKLLVDYGLEPGEEVYPAVMLS 203
>gi|322420709|ref|YP_004199932.1| Radical SAM domain-containing protein [Geobacter sp. M18]
gi|320127096|gb|ADW14656.1| Radical SAM domain protein [Geobacter sp. M18]
Length = 347
Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C T G + DL+E+ G + +
Sbjct: 24 CNLR--------------CTTCLSSSGEPAHGELTTAEALDLVEQVHQAGVFQINF---G 66
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEP ++ D ++ ++RG + TNG
Sbjct: 67 GGEPFMRPDFEQILATCHERGIMTCISTNG 96
>gi|225571285|ref|ZP_03780281.1| hypothetical protein CLOHYLEM_07383 [Clostridium hylemonae DSM
15053]
gi|225159761|gb|EEG72380.1| hypothetical protein CLOHYLEM_07383 [Clostridium hylemonae DSM
15053]
Length = 259
Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 21/111 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI---QGTKGGRYNVDQL 70
GEG GC L +C++C T + G + +
Sbjct: 18 DGEGLRT-----VVYVKGCPL-----------RCQWCSTPESQLVECMMDYGYDATPESI 61
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
I + + G ++GGE +LQ D ++ + G A+E++
Sbjct: 62 LKEIRKDEVFFFHSGGGVTISGGEVMLQSDFVRDILAGCKEDGLNTAIESS 112
>gi|300694473|ref|YP_003750446.1| ribonucleotide reductase activating transmembrane protein (nrdg)
[Ralstonia solanacearum PSI07]
gi|299076510|emb|CBJ35835.1| putative ribonucleotide reductase activating transmembrane protein
(nrdG) [Ralstonia solanacearum PSI07]
Length = 248
Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + ++ R + Q
Sbjct: 39 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHLQLRE---RRLHWTQ 80
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ ++ + + V +GGEPL + +P LI A+ + GF+ + T G
Sbjct: 81 VMAFLQRRRTLLDA----VVFSGGEPLSEPRLPQLIAAVRELGFKAGLHTGGIYP 131
>gi|312963443|ref|ZP_07777925.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
fluorescens WH6]
gi|311282249|gb|EFQ60848.1| pyrroloquinoline quinone biosynthesis protein E [Pseudomonas
fluorescens WH6]
Length = 383
Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 59/183 (32%), Gaps = 21/183 (11%)
Query: 22 RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
+ A+ G LW E R QC +C + +G + +Q I+
Sbjct: 11 KPAI-----GLPLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELSTEQW---IKVFREA 60
Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWI 131
E +GGEPL+ Q LI K GF + T+G + G+D I
Sbjct: 61 REMGAAQLGFSGGEPLVRQDLAELIAEARKLGFYTNLITSGIGLTEQKISDFKKAGLDHI 120
Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+S +A + K F Q + + L + + + I
Sbjct: 121 QISFQASDEQVNNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIEL 179
Query: 192 CFQ 194
C
Sbjct: 180 CIA 182
>gi|242277771|ref|YP_002989900.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
gi|242120665|gb|ACS78361.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
Length = 449
Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 61/195 (31%), Gaps = 31/195 (15%)
Query: 31 GCNLWSGREQDRLSAQC------RF-CDTD----FVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G D C + CD F + +L +L+++
Sbjct: 77 GCPFDCGLCPDHNQHTCTTLVEITWRCDLKCKVCFASAGQKVPADPTILELDNLLQKVRA 136
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGT---IEPPQGIDWICVS 134
T L+GGEP ++ D+P + + K GF + V TNG +P W
Sbjct: 137 TAGPCN--LQLSGGEPAVRDDLPRIAELAKKHGFPFVQVNTNGVRVAQDPGLAKRWAAGG 194
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER-----FSLQP-----MDGPFLEEN 184
+ + N+ E + L P ++ + E
Sbjct: 195 VDSAFLQFDGTNDHIYKTIRGRNLLEEKIKAIENLTAAGIGVVLVPTVVPGVNNDDIGEI 254
Query: 185 TNLAISYCFQNPKWR 199
LA+SY P R
Sbjct: 255 LKLAVSYA---PGVR 266
>gi|254168362|ref|ZP_04875207.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
gi|289595846|ref|YP_003482542.1| glycyl-radical enzyme activating protein family [Aciduliprofundum
boonei T469]
gi|197622643|gb|EDY35213.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
gi|289533633|gb|ADD07980.1| glycyl-radical enzyme activating protein family [Aciduliprofundum
boonei T469]
Length = 303
Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 58/215 (26%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFC 50
K Y+I G G +F GC L + +C C
Sbjct: 10 KRYAIH------DGPGIRT---TIFM--KGCPLRCIWCHNPEGQSINFEIMYIEYKCIHC 58
Query: 51 DT-------DFVGIQGTK---------------------------GGRYNVDQLADLIEE 76
T + G + V++L IE+
Sbjct: 59 YTCVHTCPYKLIYFDDFGAQHIERDKCTYCGICTENCPTSALEFIGRKITVEELMKEIEK 118
Query: 77 QWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
+ G +GGEPL+Q + K G ++T+G + +
Sbjct: 119 DITLYDSSGGGVTFSGGEPLMQPEFLKEALIECKKIGVHTTLDTSGYASREVLESIMDYA 178
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
D+K+ +E K N + + F +
Sbjct: 179 DLFLYDIKLYDSKEHKKYTGVSNEIIKENLKFLVK 213
>gi|239626003|ref|ZP_04669034.1| pyruvate-formate lyase-activating enzyme [Clostridiales bacterium
1_7_47_FAA]
gi|239520233|gb|EEQ60099.1| pyruvate-formate lyase-activating enzyme [Clostridiales bacterium
1_7_47FAA]
Length = 275
Score = 43.3 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 18/175 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL C FC + + G + L + ++
Sbjct: 68 FGCNLK-----------CPFCQNHGISMAGERDSEVVTVTPGQLADRAADLRDRGNIGVA 116
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL+ + + + G + + TNG+ + + DLK +
Sbjct: 117 YTYNEPLVGWEFVRDTARLVRMAGMKNVIVTNGSASDRVLDGLLPYTDAMNIDLKGFTDR 176
Query: 148 ELKLVFPQVNVSPENYIGFD-FERFSL----QPMDGPFLEENTNLAISYCFQNPK 197
+ + + V L P + E LA NP+
Sbjct: 177 YYRKLGGSLEVVKHFIERAAGECHVELTTLIVPGENDSEAEIKELAAWVASVNPR 231
>gi|150018872|ref|YP_001311126.1| glycyl-radical activating family protein [Clostridium beijerinckii
NCIMB 8052]
gi|149905337|gb|ABR36170.1| glycyl-radical enzyme activating protein family [Clostridium
beijerinckii NCIMB 8052]
Length = 306
Score = 43.3 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
KG + ++Q+ +++ I + G L+GGEPL+Q D L +A +G+ A+ET
Sbjct: 108 KGKKMTIEQVIKELKKDAINYRRSGGGITLSGGEPLVQSDFSKELFKACKAQGWHTAIET 167
Query: 119 NGT------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
G E ID + + K+ + + N + I R
Sbjct: 168 TGYANSETIEEVFPYIDLVLMDIKSTNLELHRKYTGVSNEIILNNAKRISEISKMVIRVP 227
Query: 173 LQPMDGPFLEENTNLA 188
L P +++ L
Sbjct: 228 LIPDFNSSMQDILELC 243
>gi|229592978|ref|YP_002875097.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
fluorescens SBW25]
gi|229364844|emb|CAY52889.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens SBW25]
Length = 376
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 59/183 (32%), Gaps = 21/183 (11%)
Query: 22 RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
+ A+ G LW E R QC +C + +G + +Q I+
Sbjct: 4 KPAI-----GLPLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELSTEQW---IKVFREA 53
Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWI 131
E +GGEPL+ Q LI K GF + T+G + G+D I
Sbjct: 54 REMGAAQLGFSGGEPLVRQDLAELIAEARKLGFYTNLITSGIGLTEQKISDFKKAGLDHI 113
Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+S +A + K F Q + + L + + + I
Sbjct: 114 QISFQASDEQVNNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIEL 172
Query: 192 CFQ 194
C
Sbjct: 173 CIA 175
>gi|17223652|gb|AAK50370.1| putative benzylsuccinate synthase activating enzyme [Azoarcus sp.
T]
Length = 332
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 60/170 (35%)
Query: 6 IKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFC- 50
+ EI F +LQ G G +F GC L + + A+C C
Sbjct: 6 VTEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDVRQEFYYYPARCVGCG 59
Query: 51 -------------------------D-TD-----------FVGIQGTKGGRYNVDQLADL 73
D TD + T G R +V+++
Sbjct: 60 RCMAVCPAGTSRLVHNSDGRTIVELDRTDCQRCMRCVAACLTDARTTVGQRMSVEEILRE 119
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
G ++GG+PL + L + + +R +A+ET+
Sbjct: 120 ALSDSPFYRNSGGGVTISGGDPLFHPSFTLELARRIKERNVHVAIETSCF 169
>gi|330956955|gb|EGH57215.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 389
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGLELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKQAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|291287424|ref|YP_003504240.1| glycyl-radical enzyme activating protein family [Denitrovibrio
acetiphilus DSM 12809]
gi|290884584|gb|ADD68284.1| glycyl-radical enzyme activating protein family [Denitrovibrio
acetiphilus DSM 12809]
Length = 266
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 48/177 (27%), Gaps = 37/177 (20%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV------------------ 55
G G VF F GC L C +C
Sbjct: 18 DGPGIRT---TVF--FKGCPLS-----------CMWCHNPESRMQAPQTITKELKLDNTT 61
Query: 56 -GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
+ T G V ++ I + I E+ G +GGE Q + L+ K
Sbjct: 62 RTTKETVGKEMTVSEVMTEINKDIIFFEESGGGVTFSGGEVFQQDKFLISLLAECKKSDI 121
Query: 113 EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
I V+T G + + D+K+ K N + F E
Sbjct: 122 NICVDTTGHVSTKVLKTAAPLVDTFLYDIKLMNDDAHKKYCGVSNKLILANLRFLLE 178
>gi|219666435|ref|YP_002456870.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
hafniense DCB-2]
gi|219536695|gb|ACL18434.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
hafniense DCB-2]
Length = 310
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 12/148 (8%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G V+ + +E+ + + G +GGEPL+Q D ++ +R + +ET
Sbjct: 117 GKPTTVEDVLKEVEKDSVFYARSGGGLTFSGGEPLMQGDFVAETLKEARRRRLKTTIETC 176
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS------- 172
G ++ D+K ++ + N + E F
Sbjct: 177 GYVDWSTMEKVCQHLTSLIMDIKCMDPEKHQKYTGASNELILDNFNKLCEHFPKLPKLIR 236
Query: 173 --LQPMDGPFLEENTNLAISYCFQNPKW 198
+ P EE+ + P
Sbjct: 237 TPVVPGFN-DREEDIREIAEFVKDKPNV 263
>gi|320534425|ref|ZP_08034907.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133372|gb|EFW25838.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 291
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 19/142 (13%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF +GC L +C + G +L
Sbjct: 64 VDGPGTRM---TVF--LNGCPLRCL-----------YCHNPDTFLM-KDGEPVETSELLR 106
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ L+GGE L+Q L+ K G ++T+G + +
Sbjct: 107 RMRRYRGVFRASKGGITLSGGEVLMQPAFAGKLLAGAKKMGIHTCIDTSGFLGANASDEM 166
Query: 131 ICVSPKAGCDLKIKGGQELKLV 152
+ D+K + K V
Sbjct: 167 LDDIDLVLLDIKSGDEETYKKV 188
>gi|302342136|ref|YP_003806665.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfarculus baarsii DSM 2075]
gi|301638749|gb|ADK84071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfarculus baarsii DSM 2075]
Length = 247
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN C +C + ++ ++ + +
Sbjct: 41 LPGCNF-----------ACPYCHNHALAVEPESYQTRPLED----VLARLRPFVGWIDGV 85
Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
V++GGEP + + L+ + GF + ++TNG
Sbjct: 86 VVSGGEPTVNQGLERLLALIKAEGFAVKLDTNGHRP 121
>gi|315654547|ref|ZP_07907453.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Mobiluncus curtisii ATCC 51333]
gi|315491011|gb|EFU80630.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Mobiluncus curtisii ATCC 51333]
Length = 266
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G +VF GC G Q+ I Y+
Sbjct: 25 FSTVDWPGKL--VASVF--LQGCPWNCGYCQNV------------AIIDPRAPAGYHEAD 68
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
L +L+ + + V +GGEP VP Q + GF + + T G
Sbjct: 69 LWELLGRRRGLLDG----VVFSGGEPTRQAALVPAAQRVRDLGFLVGLHTGGAYP 119
>gi|292656905|ref|YP_003536802.1| putative molybdenum cofactor biosynthesis protein A [Haloferax
volcanii DS2]
gi|291370757|gb|ADE02984.1| probable molybdenum cofactor biosynthesis protein A [Haloferax
volcanii DS2]
Length = 320
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 56/175 (32%), Gaps = 17/175 (9%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G D++ + E TGGEP+L+
Sbjct: 20 DRCNFDCVYCHNEGLGDTRGPMDASDEEMSADDVVRFLEVVEEYGVEKVKFTGGEPMLRA 79
Query: 100 DVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKI---KGGQEL 149
D+ I E ++ TNGT G+D + VS A
Sbjct: 80 DLEEIIRRTPDSMETSLTTNGTFLGDRAEDLVAAGLDRVNVSQDALDPEAFAQITKSGAY 139
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
V V + + L + + + Y +NP L +Q
Sbjct: 140 DKVTEGVKAA----VDAGLTPVKLNMVVFTKTAGHVEEMVEYVAENPG--LQLQL 188
>gi|258424329|ref|ZP_05687210.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9635]
gi|257845595|gb|EEV69628.1| pyruvate formate-lyase 1-activating enzyme [Staphylococcus aureus
A9635]
Length = 251
Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 34/183 (18%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G GC +C +C
Sbjct: 9 VESLGTVDGPGLR-----YILFTQGC-----------LLRCLYCHNPDTWKISEPSREVT 52
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
VD++ + I + G ++GGEPLLQ+ L L + G ++ +
Sbjct: 53 VDEMVNEILPYKPYFDASGGGVTVSGGEPLLQMPFLEKLFAELKENGVHTCLDIS----- 107
Query: 125 PQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL----------Q 174
G + + + K + L ++ + L Q
Sbjct: 108 -AGCANDTKAFQRHFEELQKHTDLILLDIKHIDNDKHIRLTGKPNTHILNFARKLSDMKQ 166
Query: 175 PMD 177
P+
Sbjct: 167 PVW 169
>gi|209963664|ref|YP_002296579.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodospirillum centenum SW]
gi|209957130|gb|ACI97766.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Rhodospirillum centenum SW]
Length = 217
Score = 43.3 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 9/125 (7%)
Query: 28 RFSGCNLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
R S C+ C + C + R + + +
Sbjct: 11 RLSTCDWPGELVATVFCQGCPWAC--PYCHNPDLLPARGQRELAWEQVLAFLEGRRGLLD 68
Query: 87 YCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPKAGCD 140
V +GGE LQ +P ++ + GF I + T G +DW+ KA
Sbjct: 69 GVVFSGGEATLQAALPDAMRTVRGMGFRIGLHTGGPYPERLADLLPLLDWVGFDVKAPFA 128
Query: 141 LKIKG 145
+
Sbjct: 129 EYERI 133
>gi|78358583|ref|YP_390032.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78220988|gb|ABB40337.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 464
Score = 43.3 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 28 RFSGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
R GC G + R + CRFC F + ++ L L
Sbjct: 74 RTKGCPFDCGLCPEHNQHTCTLLFEITSRCNLHCRFC---FASAGKSAPPDPDMAALRTL 130
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVETNG 120
++ L+GGEP ++ D+P I + K F + + TNG
Sbjct: 131 MDNARPRTGPCN--VQLSGGEPTMRDDLPQIIGMAKERFPFVQLNTNG 176
>gi|15643993|ref|NP_229042.1| hypothetical protein TM1237 [Thermotoga maritima MSB8]
gi|148270657|ref|YP_001245117.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
gi|170289363|ref|YP_001739601.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
gi|281412967|ref|YP_003347046.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
gi|4981791|gb|AAD36312.1|AE001779_14 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|147736201|gb|ABQ47541.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
gi|170176866|gb|ACB09918.1| Radical SAM domain protein [Thermotoga sp. RQ2]
gi|281374070|gb|ADA67632.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
Length = 355
Score = 43.3 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 19/125 (15%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITG 81
AVF F+GCNL Q+ D ++ G ++G ++D+L ++
Sbjct: 127 AVF--FAGCNLDCLFCQNI--------DHKYMVKDGRISEGKIVDIDELVEIAM------ 170
Query: 82 EKEGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
+ GG+P L A+ I ETNG P VS ++G
Sbjct: 171 KPRVSCVCFFGGDPTPWTVFALEFAVKLGNRRRICWETNGLAHPRIMERMARVSLESGGI 230
Query: 141 LKIKG 145
+KI
Sbjct: 231 VKIDW 235
>gi|309388472|gb|ADO76352.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Halanaerobium praevalens DSM 2228]
Length = 232
Score = 43.3 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 21/104 (20%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWIT 80
VFC GCN + C +C + T G D ++++
Sbjct: 20 AVVFC--QGCNFY-----------CPYCHNKQLIPVETPAGEELMPQDYFFRFLKQREKL 66
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTI 122
+ +TGGEPLLQ ++ K I ++TNG+
Sbjct: 67 LDG----ITITGGEPLLQPNLKEFMLKIKEESNLLIKLDTNGSN 106
>gi|298674076|ref|YP_003725826.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanohalobium evestigatum Z-7303]
gi|298287064|gb|ADI73030.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanohalobium evestigatum Z-7303]
Length = 251
Score = 43.3 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 20/105 (19%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G+V++ F GC +C +C + + G+ + IE Q
Sbjct: 18 GKVSIVISFRGCPF-----------RCPYCHN-YELLTGSNFVDIS------EIESQINK 59
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123
+ V TGGEP +Q D + + + TNG
Sbjct: 60 SKIFVDNVVFTGGEPFMQPDALKHLVGFAKQNNLLVGINTNGFYP 104
>gi|303290949|ref|XP_003064761.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453787|gb|EEH51095.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 278
Score = 43.3 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 26/121 (21%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
+ F + G G R VF GC +C FC + G
Sbjct: 29 VDSFTAVDGHGI---RAIVF--LQGC-----------EKRCVFCCNPDSWSARS-GASMT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD---------VPLIQALNKRGFEIAVE 117
Q+ I+ G L+GGEPLLQ L + RG A++
Sbjct: 72 AKQVFTRIQRNARYYAASGGGITLSGGEPLLQARRRRRRPAFAAELCDLVRARGLTAAID 131
Query: 118 T 118
T
Sbjct: 132 T 132
>gi|37523340|ref|NP_926717.1| hypothetical protein gll3771 [Gloeobacter violaceus PCC 7421]
gi|35214344|dbj|BAC91712.1| gll3771 [Gloeobacter violaceus PCC 7421]
Length = 334
Score = 43.3 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN + +A+C FCD + +Y T
Sbjct: 6 CN---YYVTYKCNARCHFCDI-------WALTPPPESSYQTICANLRDLKRLGVKYVDFT 55
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETN 119
GGEPLL+ D+ L + G + TN
Sbjct: 56 GGEPLLRPDIVELYAEAKRLGLMTTLTTN 84
>gi|307353809|ref|YP_003894860.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanoplanus petrolearius DSM 11571]
gi|307157042|gb|ADN36422.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanoplanus petrolearius DSM 11571]
Length = 252
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 24/109 (22%)
Query: 19 HAGRV--AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GR VF R GC + +C +C + +D++ D+I +
Sbjct: 16 WRGRAVCTVFFR--GCPV-----------RCYYCHNREIQT---GEELREIDEIEDMIRQ 59
Query: 77 QWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+ + +GGE +Q + L + K + V+TNG
Sbjct: 60 SRLA----ISGVIFSGGEATMQKEGLMELARRCRKMNLAVGVQTNGVFP 104
>gi|256827642|ref|YP_003151601.1| putative Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
gi|256583785|gb|ACU94919.1| predicted Fe-S oxidoreductase [Cryptobacterium curtum DSM 15641]
Length = 422
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + + + D+ +I++ + +
Sbjct: 50 CNLKC--------EHC------YALSDAQHYDQLSTDEAKAMIDDL---AAFGAPVLLFS 92
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
GGEP + + L+Q G + + TNGT+ P+
Sbjct: 93 GGEPCVRPDLLELMQYAKAAGMRVVISTNGTLITPE 128
>gi|307823974|ref|ZP_07654202.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
gi|307735268|gb|EFO06117.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
Length = 378
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+ C T + ++ ++++ + +L+
Sbjct: 36 CNLT-----------CKHCYT--TSTDINFPNELSTPEIYTVMDDL---KAFKVPVLILS 79
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPLL D+ + + GF +A+ TNGT ID I
Sbjct: 80 GGEPLLHPDIFNISRRAKDMGFYVALSTNGTKISADNIDEI 120
>gi|218666984|ref|YP_002427097.1| anaerobic ribonucleoside-triphosphate reductase, beta subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218519197|gb|ACK79783.1| anaerobic ribonucleoside-triphosphate reductase, beta subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 233
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 26/136 (19%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ + G + GC +CR+C + G ++
Sbjct: 17 FSTVD----YPGHLCAVLYTQGCP-----------CRCRYCHNPHL----QPGRGHSGIS 57
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
++ GGEP ++ + GF A+ T+G
Sbjct: 58 WPAIMAWLATRAGLLDA-VAFCGGEPTAHKSLRAALRQVRALGFGTALHTSGIYPYNFSQ 116
Query: 129 -----DWICVSPKAGC 139
DW+ KA
Sbjct: 117 MLPYVDWVGFDVKAPP 132
>gi|198284429|ref|YP_002220750.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|198248950|gb|ACH84543.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidithiobacillus ferrooxidans ATCC 53993]
Length = 240
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 26/136 (19%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ + G + GC +CR+C + G ++
Sbjct: 24 FSTVD----YPGHLCAVLYTQGCP-----------CRCRYCHNPHL----QPGRGHSGIS 64
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
++ GGEP ++ + GF A+ T+G
Sbjct: 65 WPAIMAWLATRAGLLDA-VAFCGGEPTAHKSLRAALRQVRALGFGTALHTSGIYPYNFSQ 123
Query: 129 -----DWICVSPKAGC 139
DW+ KA
Sbjct: 124 MLPYVDWVGFDVKAPP 139
>gi|169633583|ref|YP_001707319.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
baumannii SDF]
gi|226704988|sp|B0VQD7|PQQE_ACIBS RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|169152375|emb|CAP01316.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
III) [Acinetobacter baumannii]
Length = 384
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + D+ ++ + +
Sbjct: 8 PLWLLAELTYRCLLQCPYCSNPLDYAQHKN--ELTTQEWFDVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ ++ GF + T+G G+D I +S +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQLGFYTNLVTSGMGLTEQRISHLKQAGLDHIQISFQASDPVL 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ + I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IDKIIELCLE 173
>gi|227120433|gb|ACP19314.1| PqqE [Rahnella aquatilis]
Length = 396
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + + Q + EE E +
Sbjct: 30 PLWLLAELTYRCPLQCPYCSNPLDFAK--QDKELTTAQWIKVFEE---AREMGAVQIGFS 84
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GGEPL++ D+P I+A GF + T+G
Sbjct: 85 GGEPLVRKDLPELIRAARDLGFYTNLITSG 114
>gi|317154198|ref|YP_004122246.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio aespoeensis Aspo-2]
gi|316944449|gb|ADU63500.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio aespoeensis Aspo-2]
Length = 236
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 18/102 (17%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
+F GCNL +C C + I+
Sbjct: 33 IF--LGGCNL-----------RCPTCHNGQLAWDMHTLPIIEPP----RIKAYLRDRAGW 75
Query: 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP 125
+TGGEP L+ + + G + ++TNG
Sbjct: 76 LDGVTVTGGEPTTVPGLAGLLFEIRQSGLPVKLDTNGMRPDM 117
>gi|207722418|ref|YP_002252854.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
MolK2]
gi|206587597|emb|CAQ18179.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
MolK2]
Length = 248
Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + R+
Sbjct: 39 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHL----QARERH---I 76
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ + V +GGEPL + +P LI A+ GF+ + T G
Sbjct: 77 HWTQVMAFLQSRRALLDAVVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYP 131
>gi|325960016|ref|YP_004291482.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanobacterium sp. AL-21]
gi|325331448|gb|ADZ10510.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanobacterium sp. AL-21]
Length = 247
Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 20/107 (18%)
Query: 19 HAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
+G++A+ + C +C +C G Y ++++ IEE
Sbjct: 23 FSGKMALVIFTAKC-----------MLRCPYC---HNSEIIEGGDVYQLEEIFQKIEESI 68
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE--IAVETNGTIE 123
+ V++GGEPL+Q + + E ++TNG
Sbjct: 69 DFIDS----VVISGGEPLMQDTQVFEILKHAKSLELSTKMDTNGYYP 111
>gi|255316723|ref|ZP_05358306.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Clostridium difficile QCD-76w55]
Length = 166
Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 9 IFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNV 67
IF ++ G G R+ VF +GC +C+ C G Y
Sbjct: 12 IFESIVDGTGL---RLVVF--LAGC-----------QHRCKGCHNPETW-DINNGIMYTN 54
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV------PLIQALNKRGFEIAVET 118
+++ + I +++ + +GG+PLLQ + + + L + F+I + T
Sbjct: 55 EEVINFIVDKYKKCNGYYKGITFSGGDPLLQKEELEYIIKDIREKLKEYNFDIWLYT 111
>gi|170761428|ref|YP_001788504.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169408417|gb|ACA56828.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 300
Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKVI 70
Query: 47 -------------CRFCD--TDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F ++ G ++ I + + E+ G
Sbjct: 71 TMKNNIPVVDEGKCNFCGKCTNFCPNSVREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKVRGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D EN + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIIKDVNDNNENIDETIKFI 241
>gi|70732962|ref|YP_262735.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
fluorescens Pf-5]
gi|83288391|sp|Q4K4U8|PQQE_PSEF5 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|68347261|gb|AAY94867.1| coenzyme PQQ synthesis protein E [Pseudomonas fluorescens Pf-5]
Length = 389
Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q I+ E +
Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELSTEQW---IKVFREAREMGAAQLGFS 77
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI K GF + T+G + G+D I +S +A +
Sbjct: 78 GGEPLVRQDLAELIGEARKLGFYTNLITSGIGLTEQKISDFKKAGLDHIQISFQASDEQV 137
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 138 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 188
>gi|322835536|ref|YP_004215562.1| coenzyme PQQ biosynthesis protein E [Rahnella sp. Y9602]
gi|321170737|gb|ADW76435.1| coenzyme PQQ biosynthesis protein E [Rahnella sp. Y9602]
Length = 377
Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + Q + EE E +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAKQE--KELTTAQWIKVFEE---AREMGAVQIGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GGEPL++ D+P I+A GF + T+G
Sbjct: 66 GGEPLVRKDLPELIRAARDLGFYTNLITSG 95
>gi|83745550|ref|ZP_00942608.1| Pyruvate formate-lyase activating enzyme [Ralstonia solanacearum
UW551]
gi|83727627|gb|EAP74747.1| Pyruvate formate-lyase activating enzyme [Ralstonia solanacearum
UW551]
Length = 244
Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + R+
Sbjct: 35 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHL----QARERH---L 72
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ + V +GGEPL + +P LI A+ GF+ + T G
Sbjct: 73 HWTQVMAFLQSRRALLDAVVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYP 127
>gi|297155243|gb|ADI04955.1| radical SAM family protein [Streptomyces bingchenggensis BCW-1]
Length = 170
Score = 43.3 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 32/165 (19%)
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPP 125
AD++E V++GGEPL P+I+AL + G + +ETNGT+ P
Sbjct: 1 MDPADVVERLL---AFGVGLIVISGGEPLNQQSRLEPVIRALREAGIAVEIETNGTVAPQ 57
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQV----------------------NVSPENY 163
+ + L G E + + P+V
Sbjct: 58 AALAAAGIRFNVSPKLAHSGIAEKRRIVPEVLGEFTRLPGAAFKFVCATASDLEEVDALV 117
Query: 164 IGFDFERFSLQP--MDGPFLEENTN-LAISYCFQNPKWRLSVQTH 205
+ + P +EE LA + KW LS + H
Sbjct: 118 ARHSLKNIWIMPRGQSPEEIEEGIRTLADEVVGR--KWNLSGRLH 160
>gi|218780423|ref|YP_002431741.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
alkenivorans AK-01]
gi|218761807|gb|ACL04273.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
alkenivorans AK-01]
Length = 297
Score = 43.3 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
GG ++ + L + I G L+GGEPLL + + G I +ET
Sbjct: 100 GGDWDAESLLEEIAADRDFFLDSGGGVTLSGGEPLLHGDFLLEFLSLAKSEGIHINLETC 159
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF----SLQP 175
G + DLK+ QE N N E F + P
Sbjct: 160 GMAGYEVLSSLTPLLDLVYFDLKLMDSQEHARYTGAPNARILNNFSLLAEEFPAVQARMP 219
Query: 176 MDG--PFLEENTNLAISYCFQNPK 197
+ EEN ++ N K
Sbjct: 220 VIPGVNDSEENIFQTAAFLRHNKK 243
>gi|315427941|dbj|BAJ49532.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
Length = 564
Score = 43.3 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
L + +R C +C F + +DQ+ +++++ G +TGG
Sbjct: 106 LSNLVITNRCDLHCWYC--FFYAEKAGYIYEPTLDQIREMVKQLKAERPVPGNSVQITGG 163
Query: 94 EPLLQVDVP-LIQALNKRGF-EIAVETNG 120
EP L+ D+P +I+ L + G I + TNG
Sbjct: 164 EPCLRDDLPEIIRILKEEGVDHIQLNTNG 192
>gi|315426306|dbj|BAJ47947.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
Length = 564
Score = 43.3 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
L + +R C +C F + +DQ+ +++++ G +TGG
Sbjct: 106 LSNLVITNRCDLHCWYC--FFYAEKAGYIYEPTLDQIREMVKQLKAERPVPGNSVQITGG 163
Query: 94 EPLLQVDVP-LIQALNKRGF-EIAVETNG 120
EP L+ D+P +I+ L + G I + TNG
Sbjct: 164 EPCLRDDLPEIIRILKEEGVDHIQLNTNG 192
>gi|312879763|ref|ZP_07739563.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aminomonas paucivorans DSM 12260]
gi|310783054|gb|EFQ23452.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Aminomonas paucivorans DSM 12260]
Length = 227
Score = 43.3 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
AVF R GCNL FC + + ++ + +++ + + +
Sbjct: 26 AAVFTR--GCNLRC-----------PFCHNPELVLGRSES--LDPEEILGDLRRRRDFLD 70
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
++GGEP LQ ++ + G + ++TNGT+
Sbjct: 71 G----VAVSGGEPCLQSGLASFLRRVVDLGLGVKLDTNGTLPQ 109
>gi|167031421|ref|YP_001666652.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
putida GB-1]
gi|166857909|gb|ABY96316.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida GB-1]
Length = 386
Score = 43.3 bits (101), Expect = 0.023, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 57/183 (31%), Gaps = 21/183 (11%)
Query: 22 RVAVFCRFSGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
AV G LW E R QC +C +G + +Q ++ E
Sbjct: 14 TPAV-----GLPLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELSTEQWFKVMAE---A 63
Query: 81 GEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWI 131
E +GGEPL+ Q LI + G+ + T+G G+D I
Sbjct: 64 REMGAAQIGFSGGEPLVRQDLAELIGEARRLGYYTNLITSGIGLTEARIADFKKAGLDHI 123
Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+S +A + K F Q + + L + + + I
Sbjct: 124 QISFQASDEQVNNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIEL 182
Query: 192 CFQ 194
C
Sbjct: 183 CIA 185
>gi|330874819|gb|EGH08968.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
Length = 389
Score = 43.0 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDF--ARQGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKKAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|302336771|ref|YP_003801977.1| glycyl-radical enzyme activating protein family [Spirochaeta
smaragdinae DSM 11293]
gi|301633956|gb|ADK79383.1| glycyl-radical enzyme activating protein family [Spirochaeta
smaragdinae DSM 11293]
Length = 305
Score = 43.0 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 46/165 (27%), Gaps = 52/165 (31%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA---------------------------- 45
G G VF F GCNL Q+ S
Sbjct: 17 DGPGIRT---VVF--FKGCNLHCLWCQNPESQQRRPQVLYYRKQCVGCGKCIETCPAGAI 71
Query: 46 -------------QCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+C C D F + G + + + I + E G
Sbjct: 72 DTASDLGFVTIHDRCTLCASCVDACFYNARRIAGEVRSSEDIMREIMKDQSFYENSGGGV 131
Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
+GGEPLLQ+ V L G A+ET G++ +
Sbjct: 132 TFSGGEPLLQIEGLVDLASRCRSEGIHTALETAGSVPWDRFERIF 176
>gi|153000804|ref|YP_001366485.1| radical SAM domain-containing protein [Shewanella baltica OS185]
gi|151365422|gb|ABS08422.1| Radical SAM domain protein [Shewanella baltica OS185]
Length = 298
Score = 43.0 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 14/169 (8%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + S +C CDT F + + +++ ++G
Sbjct: 72 NLNNKPRIRWDSERCSQCDTCFAVCPKQASPKVTHYTVEEILGILHSQRHF-INGITVSG 130
Query: 93 GE-----PLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
GE P + I+A ++TNG++ + A DLK
Sbjct: 131 GEASLQLPFIIALFKGIKATESLSHLSCMLDTNGSLSLTGWHKLLPFLDSAMVDLKAWQQ 190
Query: 147 QELKLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ + + N + R P + +E LA
Sbjct: 191 DTHRYITGRDNHAVFKSIQLLAKQQKLYEVRLLHIPSITDYEQEIEALA 239
>gi|28867738|ref|NP_790357.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
str. DC3000]
gi|32363288|sp|Q88A84|PQQE_PSESM RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|28850973|gb|AAO54052.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331015064|gb|EGH95120.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 389
Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDF--ARQGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKKAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|150388420|ref|YP_001318469.1| glycyl-radical activating family protein [Alkaliphilus
metalliredigens QYMF]
gi|149948282|gb|ABR46810.1| glycyl-radical enzyme activating protein family [Alkaliphilus
metalliredigens QYMF]
Length = 297
Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 55/188 (29%), Gaps = 52/188 (27%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFC-- 50
IF +L G G VF GC L + S +C C
Sbjct: 6 IFNIQRYSLHDGPGIRT---TVF--LKGCPLNCWWCHNPESKDRKQQILFTQQRCIHCGS 60
Query: 51 --DT--DFVGIQGTK-----------------------GGRYNVDQLADLIEEQWITGEK 83
DT +G G V ++ IE+ I E+
Sbjct: 61 CHDTCSQKAIQEGKINGENCTLCNKCVDRCPTEALELVGKDMTVAEVMGEIEKDRIFFEQ 120
Query: 84 EGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
+GGEPL Q L++ ++G V+T+G Q V+ DL
Sbjct: 121 SKGGVTFSGGEPLSQGEFLYELLRVCGQKGIHRGVDTSGFSSWQQLEKIAEVTDLFLYDL 180
Query: 142 KIKGGQEL 149
K +
Sbjct: 181 KHINNDKH 188
>gi|186471270|ref|YP_001862588.1| coenzyme PQQ biosynthesis protein E [Burkholderia phymatum STM815]
gi|184197579|gb|ACC75542.1| coenzyme PQQ biosynthesis protein E [Burkholderia phymatum STM815]
Length = 405
Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R C FC + Q D++++ G + +
Sbjct: 23 PLWLLAELTYRCPLHCAFCYNPVNYTD--HRDELSTAQWIDVLQQARKLGAAQ---LGFS 77
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPL++ D+ L+ ++ GF + T+G
Sbjct: 78 GGEPLMRDDLEALVAEAHRLGFYTNLITSG 107
>gi|302130686|ref|ZP_07256676.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. tomato NCPPB 1108]
Length = 389
Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDF--ARQGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKKAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|213967724|ref|ZP_03395871.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
T1]
gi|301382361|ref|ZP_07230779.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. tomato Max13]
gi|302062929|ref|ZP_07254470.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. tomato K40]
gi|213927500|gb|EEB61048.1| coenzyme PQQ synthesis protein E [Pseudomonas syringae pv. tomato
T1]
Length = 389
Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDF--ARQGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKKAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|206896550|ref|YP_002247823.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
3) [Coprothermobacter proteolyticus DSM 5265]
gi|206739167|gb|ACI18245.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
3) [Coprothermobacter proteolyticus DSM 5265]
Length = 306
Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 46 QC----RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QV 99
+C +C T Q G +V +L +E+ + ++ G TGGEP +
Sbjct: 89 RCGVCAHYCPT--TAWQ-MVGFTLSVKELMQELEKDRLYYDQSGGGVTFTGGEPFMQAHF 145
Query: 100 DVPLIQALNKRGFEIAVETNGTIE 123
++A + G AVET+G +
Sbjct: 146 LQHALKACKELGIHTAVETSGFVP 169
>gi|148265581|ref|YP_001232287.1| radical SAM domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146399081|gb|ABQ27714.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
Length = 347
Score = 43.0 bits (100), Expect = 0.025, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C C G + + DL+E+ G + +
Sbjct: 24 CNL-----------RCTHC---LSSSGEPAAGELSTAEALDLVEQVHQAGVFQINF---G 66
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEP L+ D ++ A + RG + TNG
Sbjct: 67 GGEPFLRPDFEEILVACHGRGIMTCISTNG 96
>gi|330968164|gb|EGH68424.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 389
Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G +Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDF--ARQGQELTTEQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKKAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMAKAVKKHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|295107926|emb|CBL21879.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Ruminococcus obeum A2-162]
Length = 232
Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF CN +C FC + + + +++ ++++ E
Sbjct: 21 ATVF--LGHCNF-----------RCPFCQNSSLVLNPAEEPEIPEEEVLSFLKKRQGILE 67
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
++GGEP L D+ IQ ++ G+ + ++TNGT
Sbjct: 68 G----VCISGGEPTLAPDLEDFIQKIHNLGYPVKLDTNGTHP 105
>gi|281355779|ref|ZP_06242273.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
gi|281318659|gb|EFB02679.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
Length = 325
Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 29 FSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
+G CNL CRFC G+ V+ L E +
Sbjct: 14 LTGRCNL-----------HCRFC-GQSKGMLAAGESELPVETWLRLAREVRALADTPEPE 61
Query: 88 CVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
L GGEPLL P L + L + GF +A TNG
Sbjct: 62 ITLWGGEPLLYSGFPRLARRLKEEGFRVAAVTNG 95
>gi|104779672|ref|YP_606170.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
entomophila L48]
gi|95108659|emb|CAK13353.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
III) [Pseudomonas entomophila L48]
Length = 372
Score = 43.0 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + Q ++ E E +
Sbjct: 6 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELSTAQWFKVMAE---AREMGAAQIGFS 60
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + G+ + T+G G+D I +S +A +
Sbjct: 61 GGEPLVRQDLAELIGEARRLGYYTNLITSGIGLTEQKIAAFKQAGLDHIQISFQASDEQV 120
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 121 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 171
>gi|284165828|ref|YP_003404107.1| molybdenum cofactor biosynthesis protein A [Haloterrigena
turkmenica DSM 5511]
gi|284015483|gb|ADB61434.1| molybdenum cofactor biosynthesis protein A [Haloterrigena
turkmenica DSM 5511]
Length = 330
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 21/176 (11%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + + D++ + E + TGGEP+L+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPMDPQDDEMSTDDVVRFLEVAAEFDVDAVKFTGGEPMLRQ 78
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVS---PKAGCDLKIKGGQEL 149
D+ I E+++ TNGT P G++ + VS +I
Sbjct: 79 DLEEIIERTPDSMEVSLTTNGTFLPGRAPDLVDAGLERVNVSQDALDPQDFAEITKSGAY 138
Query: 150 KLVFPQVNVSPE---NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
+ V V + E + + + F + + +N RL +
Sbjct: 139 EKVLEGVEAALEAGLDPVKLNMVVF-------EHTAGYVPEMVDHVAENDGLRLQL 187
>gi|253996369|ref|YP_003048433.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylotenera
mobilis JLW8]
gi|253983048|gb|ACT47906.1| coenzyme PQQ biosynthesis protein E [Methylotenera mobilis JLW8]
Length = 411
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89
LW E R C FC T ++ ++L I+ +
Sbjct: 34 PLWLLAEVTYRCPLHCAFC------YNPTDYDKHTQNELTTEQWIQALRDARKLGAIQLG 87
Query: 90 LTGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
++GGEPLL+ D ++ K G+ + T+G
Sbjct: 88 ISGGEPLLRDDIEEIVVEARKLGYYSNLITSG 119
>gi|88602761|ref|YP_502939.1| radical SAM family protein [Methanospirillum hungatei JF-1]
gi|88188223|gb|ABD41220.1| GTP cyclohydrolase subunit MoaA [Methanospirillum hungatei JF-1]
Length = 292
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
SGCNL +C +C + +++ + +++ + G R
Sbjct: 20 SGCNL-----------RCVYC---HREGETKPETPLSLEDIRAILD---VAGNIGIRTVK 62
Query: 90 LTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
TGGEPLL+ D+ I G E ++ TNG
Sbjct: 63 FTGGEPLLREDIVEIIRSVPPGIESSMTTNG 93
>gi|207738919|ref|YP_002257312.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
IPO1609]
gi|206592290|emb|CAQ59196.1| ribonucleotide reductase activating protein [Ralstonia solanacearum
IPO1609]
Length = 222
Score = 43.0 bits (100), Expect = 0.027, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + R+
Sbjct: 13 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHL----QARERH---L 50
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ + V +GGEPL + +P LI A+ GF+ + T G
Sbjct: 51 HWTQVMAFLQSRRALLDAVVFSGGEPLSEPRLPQLIAAVRALGFKTGLHTAGIYP 105
>gi|282163554|ref|YP_003355939.1| hypothetical protein MCP_0884 [Methanocella paludicola SANAE]
gi|282155868|dbj|BAI60956.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 366
Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 22/129 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL Q D+ + +I++ G + L
Sbjct: 21 GCNLHCRHCWIAPKYQ----DSKHT------YPSLPFNLFQSIIKQARPLGLAAVK---L 67
Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPP--------QGIDWICVSPKAGCDL 141
TGGEPL+ D +++ + + + +ETNG P ++ VS
Sbjct: 68 TGGEPLMHPDINNILELIKQENLGLGIETNGVFCTPDVSRRIAECNAPFVSVSLDGVNAD 127
Query: 142 KIKGGQELK 150
+ + +K
Sbjct: 128 THEWVRGVK 136
>gi|118580355|ref|YP_901605.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
2379]
gi|118503065|gb|ABK99547.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
Length = 727
Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 38/122 (31%), Gaps = 32/122 (26%)
Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGT 60
GEG GC G + R + +C FC F
Sbjct: 69 GEGR------------GCPFDCGICSEHRQQSCTVLIEVTGRCNLRCPFC---FADSGDD 113
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVET 118
G + LA ++GGEP ++ D+P +I GF I + T
Sbjct: 114 SGPDPSPADLAWRFLNALR-KSGPHNIVQISGGEPTVRDDLPEIISLGRTIGFPFIQLNT 172
Query: 119 NG 120
NG
Sbjct: 173 NG 174
>gi|319791401|ref|YP_004153041.1| coenzyme pqq biosynthesis protein e [Variovorax paradoxus EPS]
gi|315593864|gb|ADU34930.1| coenzyme PQQ biosynthesis protein E [Variovorax paradoxus EPS]
Length = 393
Score = 43.0 bits (100), Expect = 0.028, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC D+ D+ + E
Sbjct: 22 PLWLLAELTYRCPLHCAFCSNPVDYTRYDSE----LTTDEWIRVFRE---ARAMGAVQLG 74
Query: 90 LTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
+GGEPL++ D+ L+ A + GF + T+G P
Sbjct: 75 FSGGEPLVRDDLAELVAAAHDLGFYTNLITSGVGLTPP 112
>gi|256822441|ref|YP_003146404.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Kangiella koreensis DSM 16069]
gi|256795980|gb|ACV26636.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Kangiella koreensis DSM 16069]
Length = 249
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
+L + +CR+C + I Y+ +L + + ++ E V +G
Sbjct: 33 HLSCVVYCQGCAWRCRYCHNPEL-IPTKADQSYDWQELVNFLTKRQGLLEA----VVFSG 87
Query: 93 GEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
GEPLLQ VP I+ + GF++ + T G+
Sbjct: 88 GEPLLQSALVPAIETVKAMGFKVGLHTGGSAP 119
>gi|209521105|ref|ZP_03269834.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. H160]
gi|209498451|gb|EDZ98577.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. H160]
Length = 410
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R C FC + +Q D++ E G + +
Sbjct: 22 PLWLLAELTYRCPLHCAFCYNPLDYTD--HNRELSTEQWLDVLREARALGAVQ---LGFS 76
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GGEPL++ D+ + ++ ++ GF + T+G
Sbjct: 77 GGEPLVRDDLEVLVEEAHRLGFYTNLITSG 106
>gi|119871970|ref|YP_929977.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
4184]
gi|119673378|gb|ABL87634.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
Length = 259
Score = 43.0 bits (100), Expect = 0.029, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G + T +V G + ++AD + + I EK +
Sbjct: 51 GCNLRCGMCWAWRN-------TSYVLTA---GAWMSPYEVADKL--RKIVKEKGFNQVRI 98
Query: 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+GGEPL+ + R + VETNG
Sbjct: 99 SGGEPLIAPKHLIKVIDELRDYVFIVETNG 128
>gi|332179160|gb|AEE14849.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
Length = 338
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 19/100 (19%)
Query: 25 VF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCN Q+ A C + G + + L +L +
Sbjct: 75 VFSVGTFGCNFRCLGCQNWQIA-CS---------EPIGGEEISPEYLLELAKR------Y 118
Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
R T EP + ++ + + + K G + TNG
Sbjct: 119 SCRGVAWTYNEPTIWIEYVLDSAKIIKKNGLYTVMVTNGY 158
>gi|313126022|ref|YP_004036292.1| GTP cyclohydrolase subunit moaa [Halogeometricum borinquense DSM
11551]
gi|312292387|gb|ADQ66847.1| GTP cyclohydrolase subunit MoaA [Halogeometricum borinquense DSM
11551]
Length = 319
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 23/178 (12%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + D++ + E TGGEP+L+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPMEPSDDEMSTDDVVRFLEVVEEFGVEKVKFTGGEPMLRQ 78
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKI---KGGQEL 149
D+ I E ++ TNGT P G+ + VS A
Sbjct: 79 DLAEIIRRTPESMESSLTTNGTFLPGRAEDLKEAGLSRVNVSQDALDPEAFAEITKSGAY 138
Query: 150 KLVFPQVNVSPE---NYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
V V + + + + + F + + +NP L +Q
Sbjct: 139 DNVLEGVQAALDAGLDPVKLNMVVF-------EHTAGYVEEMVDHVAENPG--LQLQL 187
>gi|253559429|gb|ACT32393.1| coenzyme PQQ biosynthesis protein PqqE [Pseudomonas fluorescens]
Length = 389
Score = 43.0 bits (100), Expect = 0.030, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q + E E +
Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELSTEQWFKVFRE---AREMGAAQLGFS 77
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G + G+D I +S +A +
Sbjct: 78 GGEPLVRQDLAELIGEARRLGFYTNLITSGIGLTEQKISDFKKAGLDHIQISFQASDEQV 137
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 138 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 188
>gi|268678692|ref|YP_003303123.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfurospirillum deleyianum DSM 6946]
gi|268616723|gb|ACZ11088.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Sulfurospirillum deleyianum DSM 6946]
Length = 231
Score = 43.0 bits (100), Expect = 0.031, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 27/155 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
++F F+ CN C +C + G ++ + +E + E
Sbjct: 27 ASIFW-FAKCN-----------MACPYCYNPQIVR---GKGEISLASALEFLESRKDRLE 71
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE-------PPQGIDWICVS 134
VL+GGE L + +A+ + G++I ++TNGT +D+I +
Sbjct: 72 G----VVLSGGECTLYPHLESFCEAIKRLGYKIKIDTNGTNPALLKRLIERTLVDYIALD 127
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
KA + + ++ F FE
Sbjct: 128 YKAPKKHYTRITHHPHFEVFEESLHYLIQSHFPFE 162
>gi|254469511|ref|ZP_05082916.1| pyruvate formate-lyase 1-activating enzyme [Pseudovibrio sp. JE062]
gi|211961346|gb|EEA96541.1| pyruvate formate-lyase 1-activating enzyme [Pseudovibrio sp. JE062]
Length = 244
Score = 42.6 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 29/203 (14%)
Query: 7 KEIFLTLQGEG-GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY 65
E T+ G G + VF SGC L +C +C ++ G +
Sbjct: 11 VETGGTVDGPGLRYI----VF--TSGCPL-----------RCLYCHNPDT-LKLKAGKQS 52
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+ +L I E G ++GGEP+ Q L+ N+ G V+T+G +
Sbjct: 53 SAYELLKDISTYRSYFETGGGGLTVSGGEPMAQKEFLKTLLWGCNQMGVHTTVDTSGYLH 112
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLV-------FPQVNVSPENYIGFDFERFSLQPM 176
+ I ++ D+K + K V + E + RF L P
Sbjct: 113 ANLDDETIDMADLYLLDIKSWVPETYKKVTGVEVGPTLEFAKRLERMDKDVWIRFVLVPG 172
Query: 177 DGPFLEENTNLAISYCFQNPKWR 199
EN + + +
Sbjct: 173 -LTDAPENVEGVAKFVSELGNVK 194
>gi|311277353|ref|YP_003939584.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
gi|308746548|gb|ADO46300.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
Length = 374
Score = 42.6 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
+GC++ + R + +CR+C + + + L I +Q E
Sbjct: 2 TGCHVMAKPAGSRCNLRCRYC----FYLDKPQYAMMDDATLTLFIRQQIAAQPGEDVQFA 57
Query: 90 LTGGEPLLQVDVPLIQ-------ALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEP L + + + A++TNG + ++
Sbjct: 58 WQGGEPTLCGLDFFHRVVELQQQYGHGKRIHNALQTNGILLNDAWCRFL 106
>gi|254471421|ref|ZP_05084823.1| elongator protein 3/MiaB/NifB [Pseudovibrio sp. JE062]
gi|211959567|gb|EEA94765.1| elongator protein 3/MiaB/NifB [Pseudovibrio sp. JE062]
Length = 373
Score = 42.6 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVD 100
R + +C+ C T G + +Q ++I++ + +GGEPL+
Sbjct: 4 RCNLKCKHCYT--TSGDVDFPGELSTEQAYEVIDDL---KGFRVPVIIFSGGEPLMRPDM 58
Query: 101 VPLIQALNKRGFEIAVETNG 120
+ L + GF A+ TNG
Sbjct: 59 LELSAHAKQLGFYTALSTNG 78
>gi|298241808|ref|ZP_06965615.1| hypothetical protein Krac_10219 [Ktedonobacter racemifer DSM 44963]
gi|297554862|gb|EFH88726.1| hypothetical protein Krac_10219 [Ktedonobacter racemifer DSM 44963]
Length = 515
Score = 42.6 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 21/189 (11%)
Query: 31 GCNLWSGREQDRLSAQCRF-------C--DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
GC G D C C D G ++++ +++ T
Sbjct: 86 GCPYDCGLCPDHQQHACLGIIEVNSACNMDCPLCFADAGAGFNLTLEEVEGILDHLVET- 144
Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVS---PK 136
E +GGEP + + ++ A KR + + TNG +S P
Sbjct: 145 EGNPEVVQFSGGEPSIHPQIIEMMWAAKKRNIRHVMLNTNGKRIADDDAFLQQLSELHPS 204
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDF-----ERFSLQP-MDGPFLEENTNLAIS 190
+ +++ + ++ P+ D L P +D +
Sbjct: 205 VYFQFDGFEAETYRIIRGEPDILPQKLRALDRLAEIGANVVLVPAIDRYVNLHEVGAIVE 264
Query: 191 YCFQNPKWR 199
+ ++P R
Sbjct: 265 FGMKHPAVR 273
>gi|323528299|ref|YP_004230451.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1001]
gi|323385301|gb|ADX57391.1| coenzyme PQQ biosynthesis protein E [Burkholderia sp. CCGE1001]
Length = 431
Score = 42.6 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
LW E R C FC + + T R + D+ ++ E G +
Sbjct: 23 PLWLLAELTYRCPLHCAFC---YNPVDYTGHNRELSTDEWLRVLREARALGAAQ---LGF 76
Query: 91 TGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
+GGEPL++ D+ + ++ GF + T+G
Sbjct: 77 SGGEPLMRDDLEVLVREARSLGFYTNLITSG 107
>gi|302337968|ref|YP_003803174.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Spirochaeta smaragdinae DSM 11293]
gi|301635153|gb|ADK80580.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Spirochaeta smaragdinae DSM 11293]
Length = 253
Score = 42.6 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL--IEEQW 78
GRVA +GCNL +C +C + + G+ + ++ + IE
Sbjct: 16 GRVAAVIFTAGCNL-----------RCPYCHNADLVM-----GQISQEEGKSIPEIEAFL 59
Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
++GGEPLL L+ L ++TNGT+
Sbjct: 60 RKRAPLLGGVCISGGEPLLSPGLFDLVALLVAMEMPWKLDTNGTLP 105
>gi|197118992|ref|YP_002139419.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
[Geobacter bemidjiensis Bem]
gi|197088352|gb|ACH39623.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
[Geobacter bemidjiensis Bem]
Length = 471
Score = 42.6 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G DR + QC FC F ++++++ L+E
Sbjct: 76 GCPFDCGLCSDHRQLPCSVLLEVTDRCNLQCAFC---FADAGPKGTEDPSLERISWLLER 132
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
L+GGEP L+ D+P +++A + GF I V TNG
Sbjct: 133 AMAAAGACS--LQLSGGEPTLRDDLPEIVEAARRIGFSFIQVNTNG 176
>gi|89092878|ref|ZP_01165830.1| pyrroloquinoline quinone biosynthesis protein PqqE [Oceanospirillum
sp. MED92]
gi|89082903|gb|EAR62123.1| pyrroloquinoline quinone biosynthesis protein PqqE [Oceanospirillum
sp. MED92]
Length = 394
Score = 42.6 bits (99), Expect = 0.032, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E + QC +C G Q D+ + E +
Sbjct: 28 PLWLLAELTYKCPLQCPYCSNPLDFAD--FGSELTTQQWLDVFAQ---GRELGAVQLGFS 82
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q + LI ++ G+ + T+G G+D I VS +A +
Sbjct: 83 GGEPLVRQDLIELIGGAHEMGYYTNLITSGVGLNERKMAEFHKAGLDHIQVSFQASDESV 142
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C +
Sbjct: 143 NNMLAGSKKAFAQ-KLKMAREVKAQGYPMVLNFVTHRHNIDRIDRIIELCVE 193
>gi|308063446|gb|ADO05333.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
Sat464]
Length = 321
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T G +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPTTPLNFFDGE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
I L+ E+A+ TNG + D S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK + S E + M +E L + Y
Sbjct: 135 DALKNTLEGIEESLEVGLKLKLNMVV---MKSVNDDEILEL-LEYAKNR 179
>gi|227505189|ref|ZP_03935238.1| pyruvate radical-activating enzyme [Corynebacterium striatum ATCC
6940]
gi|227198217|gb|EEI78265.1| pyruvate radical-activating enzyme [Corynebacterium striatum ATCC
6940]
Length = 234
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 50/175 (28%), Gaps = 39/175 (22%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC L +C +C + + G + + V
Sbjct: 44 GCPL-----------RCSYCHNPQLQVFGPGSYSW------QDALSLLCSRRGLLDGVVF 86
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
+GGEPL +P I + GF++ + T+G + L
Sbjct: 87 SGGEPLSAPGLPQAIAEAHAAGFKVGLHTSGYLPGRLD------------KLMAHPETRP 134
Query: 150 KLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQ 203
+ + V PE+ R Q M F L Y RLS+Q
Sbjct: 135 EWIGIDVKALPEDLPQVTGCSRAQAQRMWESFY-----LLADYARTG---RLSLQ 181
>gi|193216092|ref|YP_001997291.1| radical SAM domain-containing protein [Chloroherpeton thalassium
ATCC 35110]
gi|193089569|gb|ACF14844.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
Length = 343
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
L R +A+C+FCD + + + L D+ + ++ T
Sbjct: 2 PLLCNYYLTYRCNAECKFCD---IWKKPSIYA-----SLPDIQQNLTDLKRLGVQFVDFT 53
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETN 119
GGEPLL D+P ++ + GF ++ TN
Sbjct: 54 GGEPLLHKDLPEILSFAKQLGFFTSITTN 82
>gi|124486075|ref|YP_001030691.1| GTP cyclohydrolase subunit MoaA [Methanocorpusculum labreanum Z]
gi|124363616|gb|ABN07424.1| GTP cyclohydrolase subunit MoaA [Methanocorpusculum labreanum Z]
Length = 319
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 11/130 (8%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQVDV 101
+C +C + G G + + I E + E + LTGGEPLL+ D+
Sbjct: 30 CDLRCIYCHREGEGDNGCTRDDHASQMTKEEISELIGVFAELGVKTIKLTGGEPLLRPDL 89
Query: 102 PLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIKGGQELKL 151
I E ++ TNGT G+ + VS +KI G LK
Sbjct: 90 LDIIRSIPPHIESSLTTNGTHLAKLAKELKDAGLSRVNVSLDTMNRDTYIKITGKDRLKD 149
Query: 152 VFPQVNVSPE 161
V ++ +
Sbjct: 150 VLDGIDAALA 159
>gi|303257298|ref|ZP_07343312.1| glutamate 5-kinase [Burkholderiales bacterium 1_1_47]
gi|302860789|gb|EFL83866.1| glutamate 5-kinase [Burkholderiales bacterium 1_1_47]
Length = 281
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 46/173 (26%), Gaps = 25/173 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDF---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
GCNL +C G + L DL + E
Sbjct: 72 GCNLRC-----------PYCQNASISMAGPDNCPHRLITPEGLTDLAVDLSKQ-EPGNIG 119
Query: 88 CVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPK-AG 138
T EP + + L++ G + V TNG E +D + + K
Sbjct: 120 VAFTYNEPTVCFEFIRDTSKLLHEAGLKSVVVTNGGLVRKYADELLPHVDALNIDLKGFS 179
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+ E V + + E+ + + P EE A
Sbjct: 180 DEFYRYVKGEFDTVKEFIKAAVEHKCHVELTTLVI-PTKNDDPEEMEREAEWI 231
>gi|217420779|ref|ZP_03452284.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 576]
gi|217396191|gb|EEC36208.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 576]
Length = 227
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC +C +C + + + D +
Sbjct: 14 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQ-----PAEIEWDALLA 53
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF++ + + GT +DW
Sbjct: 54 FLARRVGLIDAVVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113
Query: 131 ICVSPKAGCDLKIK 144
I + KA D
Sbjct: 114 IGLDVKAPFDDYTH 127
>gi|159904704|ref|YP_001548366.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus maripaludis C6]
gi|159886197|gb|ABX01134.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus maripaludis C6]
Length = 242
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 35/176 (19%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF SGCN+ G +C TK +++ + ++ +
Sbjct: 28 VF--LSGCNMKCG-----------YCHNYETIT--TKISEMTAEEVFNGMDLMF------ 66
Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQG-------IDWICVSP 135
V++GGEP LQ + + L + ++ F + ++TNGT ID+I +
Sbjct: 67 AESLVISGGEPTLQPEAVLELAKIAKEKEFPVKLDTNGTNPDLVEKLVLNKLIDYIAIDV 126
Query: 136 KAGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFSLQP--MDGPFLEENTN 186
KAG + K +E+K ++ + + F R + P MD +EE
Sbjct: 127 KAGFENYEKITGYKKEIKEDILKIIDACKKGGVFVECRTTFIPEIMDKSDIEEIAK 182
>gi|289524083|ref|ZP_06440937.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502739|gb|EFD23903.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 305
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 60/212 (28%), Gaps = 55/212 (25%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWS-----------GREQDRLSAQCRFCDT 52
IF ++ G G VF F GC L G+E +C C T
Sbjct: 12 IFDVQRYSIHDGPGIRT---TVF--FKGCPLRCWWCHNPEGIDSGKELMYFEYKCMHCGT 66
Query: 53 -DFVGIQGTK-------------------------------GGRYNVDQLADLIEEQWIT 80
V G G Y V +L IE +
Sbjct: 67 CAHVCPMGAIEFDGIPIIRRSMCIACGSCSAACPSDALNLIGKEYTVGELMKEIERDVLY 126
Query: 81 GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138
+ G +GGEPL Q + +++ K ++T+G +
Sbjct: 127 FDNSGGGVTFSGGEPLYQHEFLLEVLKECKKIDIHRTLDTSGFAPLEVLASVVDYVDLFL 186
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
DLK+ +E N + + F +
Sbjct: 187 YDLKLIDEKEHIKYTGVSNAQIKENLRFLVDH 218
>gi|257459147|ref|ZP_05624266.1| molybdenum cofactor biosynthesis protein A [Campylobacter gracilis
RM3268]
gi|257443532|gb|EEV18656.1| molybdenum cofactor biosynthesis protein A [Campylobacter gracilis
RM3268]
Length = 321
Score = 42.6 bits (99), Expect = 0.033, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 20/147 (13%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
R + +CR+C T F + R N+ ++ + + + +TGGEPL++
Sbjct: 20 RCNFRCRYCMPATPFNWV-----PRENILSFEEMFLFVKVAIDGGVKKIRITGGEPLVRK 74
Query: 100 DVP---LIQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGGQE- 148
+ + A G ++A+ TNG G+ I +S + + K +
Sbjct: 75 GIEDFIKMIADYAPGIDLALTTNGYYLKNYARALKNAGLKRINMSLDSLRPERAKFIAQR 134
Query: 149 --LKLVFPQVNVSPENYIGFDFERFSL 173
L V ++ + E + +L
Sbjct: 135 GVLYNVLEGLDAALEAGLKVKLNTVAL 161
>gi|325122193|gb|ADY81716.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
calcoaceticus PHEA-2]
Length = 384
Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + + ++ + +
Sbjct: 8 PLWLLAELTYRCPLQCPYCSNPLDYAQHKN--ELTTQEWFGVFDQ---ARQMGAVQLGFS 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ L+ +++GF + T+G G+D I VS +A +
Sbjct: 63 GGEPLVRQDLEQLVAHAHQQGFYTNLITSGMGLTEQRIADLKQAGLDHIQVSFQASDPVV 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q +D+ + +++ I C +
Sbjct: 123 NDALAGSKHAFEQKYEMCRLVKKYDYPMVLNFVIHRHNIDQ-IEQIIELCLE 173
>gi|303239826|ref|ZP_07326349.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acetivibrio cellulolyticus CD2]
gi|302592536|gb|EFL62261.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acetivibrio cellulolyticus CD2]
Length = 227
Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 30/172 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN+ C +C ++G + D++ +E++ E V+
Sbjct: 26 GCNMD-----------CFYCHNR-ALVEGGHENITDADEVLSFLEKRKGFLEG----VVV 69
Query: 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCD-- 140
+GGEP LQ +P ++ + + G+ I ++TNGT ID+I + KA +
Sbjct: 70 SGGEPTLQKGLLPFLKDVKRLGYSIKLDTNGTNPDVVENVLHKGLIDYIAMDFKAPYEKY 129
Query: 141 -LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+ ++ V V++ + I ++F +L P G ++ +A
Sbjct: 130 NEICRTEVDIGNVMRSVDLLINSGIDYEFRT-TLAP--GLDSKDIVEIAEEI 178
>gi|298345957|ref|YP_003718644.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus curtisii ATCC 43063]
gi|298236018|gb|ADI67150.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus curtisii ATCC 43063]
Length = 266
Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 21/115 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G +VF GC G Q+ I Y
Sbjct: 25 FSTVDWPGKL--VASVF--LQGCPWNCGYCQNV------------AIIDPRAPAGYQEAD 68
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
L +L+ + + V +GGEP P Q GF + + T G
Sbjct: 69 LWELLGRRRGLLDG----VVFSGGEPTRQAALTPAAQRARDLGFLVGLHTGGAYP 119
>gi|317014178|gb|ADU81614.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
Gambia94/24]
Length = 321
Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T + + L + +E I ++ + +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPTTPLDFFDDEE-----LLPLDNALEFLKIAIDEGVKKIRITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK + S + + M G +E L + Y
Sbjct: 135 DALKNALEGIEESLKVGLKLKLNTVV---MKGVNDDEILEL-LEYAKNR 179
>gi|313675791|ref|YP_004053787.1| radical sam domain protein [Marivirga tractuosa DSM 4126]
gi|312942489|gb|ADR21679.1| Radical SAM domain protein [Marivirga tractuosa DSM 4126]
Length = 326
Score = 42.6 bits (99), Expect = 0.034, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
CN R +A C FCD + + + + +V Q ++ +
Sbjct: 10 CN---YYVTYRCNASCHFCD---IWEKPSPYINKADVKQNLKDLKRL------GVKVIDF 57
Query: 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
TGGEPLL + + GF + TNG + P + + L Q+
Sbjct: 58 TGGEPLLHNEIHDFLMMAKEIGFITTLTTNGLLYPKKADKLKGMVDMLHFSLDFADAQQH 117
Query: 150 KLV 152
V
Sbjct: 118 DEV 120
>gi|257387604|ref|YP_003177377.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
mukohataei DSM 12286]
gi|257169911|gb|ACV47670.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
mukohataei DSM 12286]
Length = 348
Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + ++I + E TGGEP+L+
Sbjct: 20 DRCNFDCVYCHNEGLGDTRGPMDPQDEEMTADEVIRLLDVVREFGVETAKFTGGEPMLRQ 79
Query: 100 DVPLIQALNKRGFEIAVETNGTI 122
D+ I G E+++ TNGT
Sbjct: 80 DLVEIVRRAPDGMEVSMTTNGTF 102
>gi|170723984|ref|YP_001751672.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
putida W619]
gi|169761987|gb|ACA75303.1| coenzyme PQQ biosynthesis protein E [Pseudomonas putida W619]
Length = 382
Score = 42.6 bits (99), Expect = 0.035, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 16/170 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + Q ++ E E +
Sbjct: 16 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGKELSTAQWFKVMAE---AREMGAAQIGFS 70
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + G+ + T+G G+D I +S +A +
Sbjct: 71 GGEPLVRQDLAELIGEARRLGYYTNLITSGIGLTEARIANFKEAGLDHIQISFQASDEQV 130
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
K F Q + + L + + + I C
Sbjct: 131 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELC 179
>gi|282163323|ref|YP_003355708.1| probable molybdenum cofactor biosynthesis protein A [Methanocella
paludicola SANAE]
gi|282155637|dbj|BAI60725.1| probable molybdenum cofactor biosynthesis protein A [Methanocella
paludicola SANAE]
Length = 312
Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 17/171 (9%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
+R + QC +C + GG VD++A L+ I + +GGEPLL+ D
Sbjct: 22 NRCNLQCIYC---HNEGESGSGGEITVDEIARLV---RIATKYGVDRVKFSGGEPLLRTD 75
Query: 101 VPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCDLKIKGGQELKLVF 153
+ I +I++ TNGT+ P G+D + +S + + K F
Sbjct: 76 LEDILRALPPLKDISLTTNGTLLAPRAKGLKEAGLDRVNISLDTMDSGRFDLITQRKGQF 135
Query: 154 PQVNVSPENYIGFDFERFSLQPMDGP-FLEENTNLAISYCFQNPKWRLSVQ 203
+V I L + E+ I + P L +Q
Sbjct: 136 SRVMDGINAAIDAGLTPVKLNMVYLKGINEDEIERMIEFIRGRP---LVLQ 183
>gi|168179167|ref|ZP_02613831.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum NCTC 2916]
gi|226950612|ref|YP_002805703.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A2 str. Kyoto]
gi|182670116|gb|EDT82092.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum NCTC 2916]
gi|226844506|gb|ACO87172.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 301
Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKVI 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+ G
Sbjct: 71 TMKNNIPMVDEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKARGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D +N + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIIKDVNDNNKNIDETIKFI 241
>gi|154173832|ref|YP_001407349.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter curvus 525.92]
gi|112802456|gb|EAT99800.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter curvus 525.92]
Length = 225
Score = 42.6 bits (99), Expect = 0.036, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 23/114 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F TL G A+ F+GCN +C +C + G+ + ++
Sbjct: 11 FTTLDYPGR---VAAI-VWFAGCN-----------MRCAYC---YNIDVVLSRGKLSAEE 52
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
+ ++ + + V +GGE L +PL + + KRGF + V+TNG+
Sbjct: 53 FCEFLDRRI----GKLSGIVFSGGECTLSQSFLPLAREVKKRGFALKVDTNGSN 102
>gi|73668980|ref|YP_304995.1| heme biosynthesis protein [Methanosarcina barkeri str. Fusaro]
gi|72396142|gb|AAZ70415.1| heme biosynthesis protein [Methanosarcina barkeri str. Fusaro]
Length = 349
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL CR G D+ I+E G+
Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPAGELTTDEAKHFIDEVASIGK---PIL 59
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
+L+GGEPL + DV + + G + + TNGT+ P+
Sbjct: 60 ILSGGEPLTRPDVFEIARYGTDAGLRVVLATNGTLLTPE 98
>gi|53719965|ref|YP_108951.1| putative pyruvate radical-activating enzyme [Burkholderia
pseudomallei K96243]
gi|53725684|ref|YP_102410.1| radical SAM domain-containing protein [Burkholderia mallei ATCC
23344]
gi|76811377|ref|YP_334194.1| radical SAM domain-containing protein [Burkholderia pseudomallei
1710b]
gi|121598521|ref|YP_993691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei SAVP1]
gi|124384170|ref|YP_001028848.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei NCTC 10229]
gi|126440040|ref|YP_001059711.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 668]
gi|126450188|ref|YP_001081241.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei NCTC 10247]
gi|167001134|ref|ZP_02266935.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei PRL-20]
gi|167720455|ref|ZP_02403691.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei DM98]
gi|167739449|ref|ZP_02412223.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 14]
gi|167825055|ref|ZP_02456526.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 9]
gi|167895144|ref|ZP_02482546.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 7894]
gi|167903530|ref|ZP_02490735.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei NCTC 13177]
gi|167911777|ref|ZP_02498868.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 112]
gi|167919782|ref|ZP_02506873.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei BCC215]
gi|238562381|ref|ZP_00440588.2| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei GB8 horse 4]
gi|254184291|ref|ZP_04890881.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 1655]
gi|254261769|ref|ZP_04952823.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 1710a]
gi|52210379|emb|CAH36360.1| putative pyruvate radical-activating enzyme [Burkholderia
pseudomallei K96243]
gi|52429107|gb|AAU49700.1| radical SAM domain protein [Burkholderia mallei ATCC 23344]
gi|76580830|gb|ABA50305.1| radical SAM domain protein [Burkholderia pseudomallei 1710b]
gi|121227331|gb|ABM49849.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei SAVP1]
gi|124292190|gb|ABN01459.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei NCTC 10229]
gi|126219533|gb|ABN83039.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 668]
gi|126243058|gb|ABO06151.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei NCTC 10247]
gi|184214822|gb|EDU11865.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 1655]
gi|238522812|gb|EEP86254.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei GB8 horse 4]
gi|243063082|gb|EES45268.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei PRL-20]
gi|254220458|gb|EET09842.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 1710a]
Length = 239
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC +C +C + + + D +
Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQ-----PAEIEWDALLA 65
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF++ + + GT +DW
Sbjct: 66 FLARRVGLIDAVVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 125
Query: 131 ICVSPKAGCDLKIK 144
I + KA D
Sbjct: 126 IGLDVKAPFDDYAH 139
>gi|134278002|ref|ZP_01764717.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 305]
gi|226199930|ref|ZP_03795480.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei Pakistan 9]
gi|254177591|ref|ZP_04884246.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei ATCC 10399]
gi|254191326|ref|ZP_04897830.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei Pasteur 52237]
gi|254195707|ref|ZP_04902133.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei S13]
gi|254199311|ref|ZP_04905677.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei FMH]
gi|254205625|ref|ZP_04911977.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei JHU]
gi|254296954|ref|ZP_04964407.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 406e]
gi|134251652|gb|EBA51731.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 305]
gi|147748907|gb|EDK55981.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei FMH]
gi|147753068|gb|EDK60133.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei JHU]
gi|157808020|gb|EDO85190.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 406e]
gi|157938998|gb|EDO94668.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei Pasteur 52237]
gi|160698630|gb|EDP88600.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia mallei ATCC 10399]
gi|169652452|gb|EDS85145.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei S13]
gi|225927986|gb|EEH24023.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei Pakistan 9]
Length = 227
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC +C +C + + + D +
Sbjct: 14 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQ-----PAEIEWDALLA 53
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF++ + + GT +DW
Sbjct: 54 FLARRVGLIDAVVFSGGEPSIDPALAASIDDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113
Query: 131 ICVSPKAGCDLKIK 144
I + KA D
Sbjct: 114 IGLDVKAPFDDYAH 127
>gi|254444448|ref|ZP_05057924.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Verrucomicrobiae bacterium DG1235]
gi|198258756|gb|EDY83064.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Verrucomicrobiae bacterium DG1235]
Length = 269
Score = 42.6 bits (99), Expect = 0.037, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRY 87
CNL C + + I T Y++ I+ + E
Sbjct: 56 TQRCNLNCPSC----------CKSQLIPIPTTDAAENYDIKDCFKFIDSRIGLVES---- 101
Query: 88 CVLTGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDW 130
V+TGGEPLL D+P + A + KRG + ++TNGT+
Sbjct: 102 AVITGGEPLLHHDLPALLAHIKKRGLSVKLDTNGTLPHRLHCLI 145
>gi|168183500|ref|ZP_02618164.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Bf]
gi|182673358|gb|EDT85319.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Bf]
Length = 300
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKVI 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+ G
Sbjct: 71 TMKNNIPMVDEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKARGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D +N + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIIKDVNDNNKNIDETIKFI 241
>gi|126451746|ref|YP_001066995.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 1106a]
gi|167816652|ref|ZP_02448332.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei 91]
gi|167846563|ref|ZP_02472071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei B7210]
gi|242317715|ref|ZP_04816731.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 1106b]
gi|126225388|gb|ABN88928.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 1106a]
gi|242140954|gb|EES27356.1| ribonucleoside triphosphate reductase activase NrdG [Burkholderia
pseudomallei 1106b]
Length = 239
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC +C +C + + + D +
Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQ-----PAEIEWDALLA 65
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF+I + + GT +DW
Sbjct: 66 FLARRVGLIDAVVFSGGEPSIDPALAASIDDVRRLGFKIGLHSAGTHPRRLAHLLPSLDW 125
Query: 131 ICVSPKAGCDLKIK 144
I + KA D
Sbjct: 126 IGLDVKAPFDDYAH 139
>gi|315657548|ref|ZP_07910430.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315492020|gb|EFU81629.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 266
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 21/115 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G +VF GC G Q+ I Y
Sbjct: 25 FSTVDWPGKL--VASVF--LQGCPWNCGYCQNV------------AIIDPRTPAGYQEAD 68
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
L +L+ + + V +GGEP VP Q GF + + T G
Sbjct: 69 LWELLGRRRGLLDG----VVFSGGEPTRQTALVPAAQRARDLGFLVGLHTGGAYP 119
>gi|170290138|ref|YP_001736954.1| glycyl-radical activating family protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174218|gb|ACB07271.1| glycyl-radical enzyme activating protein family [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 299
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 40/155 (25%), Gaps = 52/155 (33%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLS--------------AQCRFC--------- 50
G G VF GC L Q+ C C
Sbjct: 15 DGPGIRTN---VF--LKGCPLRCWWCQNPEGISPKPQIMYFEYKCLHCHLCVDVCPLQAI 69
Query: 51 ----------------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
D G Y+V+++ + I + + G
Sbjct: 70 RIDKGDVHIIDRELCDACGKCSDNCPSNALKLVGREYSVEEVMEEIRKDVTFFDSSGGGV 129
Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
TGGEP Q L++A G VET+G
Sbjct: 130 TFTGGEPFFQPLFLKGLLEACKAEGIHTVVETSGF 164
>gi|153940128|ref|YP_001392535.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum F str. Langeland]
gi|152936024|gb|ABS41522.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum F str. Langeland]
gi|295320521|gb|ADG00899.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum F str. 230613]
Length = 300
Score = 42.6 bits (99), Expect = 0.038, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G +VF F GC L + + +
Sbjct: 16 DGPGIRT---SVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKII 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+ G
Sbjct: 71 TMKNNIPVVDEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKVRGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D EN + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIINDVNDNNENIDETIKFI 241
>gi|300711118|ref|YP_003736932.1| molybdenum cofactor biosynthesis protein A [Halalkalicoccus
jeotgali B3]
gi|299124801|gb|ADJ15140.1| molybdenum cofactor biosynthesis protein A [Halalkalicoccus
jeotgali B3]
Length = 327
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + + D++ + E TGGEP+L+
Sbjct: 21 DRCNFDCVYCHNEGLGDTRGPMDPQDDEMSADDVVRFLEVVREFGVEKVKFTGGEPMLRD 80
Query: 100 DVPLIQALNKRGFEIAVETNGTI 122
D+ I E+++ TNGT
Sbjct: 81 DLEEIIRRTPDEMEVSMTTNGTF 103
>gi|253700238|ref|YP_003021427.1| radical SAM protein [Geobacter sp. M21]
gi|251775088|gb|ACT17669.1| Radical SAM domain protein [Geobacter sp. M21]
Length = 471
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G D C C F ++++++ L+E
Sbjct: 76 GCPFDCGLCSDHRQLPCSVLLEVTDRCNMKCAVCFADAGPKGTEDPSLERISWLLERAMA 135
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
L+GGEP L+ D+P +++A + GF I V TNG
Sbjct: 136 AAGACS--LQLSGGEPTLRDDLPEIVEAARRIGFTFIQVNTNG 176
>gi|11499588|ref|NP_070830.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus fulgidus
DSM 4304]
gi|6685645|sp|O28273|MOAA_ARCFU RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|2648531|gb|AAB89248.1| molybdenum cofactor biosynthesis protein (moaA) [Archaeoglobus
fulgidus DSM 4304]
Length = 296
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C +C + G + +++ ++ E R +T
Sbjct: 21 CNL-----------RCFYC---HKEGESNPGEEISAERIVEIARAF---KELGVRKLKIT 63
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPLL+ D+P I EI++ TNG
Sbjct: 64 GGEPLLRKDLPDIILNLPEFEEISMTTNG 92
>gi|219853188|ref|YP_002467620.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
gi|219547447|gb|ACL17897.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
Length = 399
Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 18 GHAG--RVAVFCRFS-GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
+G R +F + CNL ++ G + T G + +I
Sbjct: 34 AFSGMYRPVIFWNLTDRCNLSCNHCYNQ------------SGPERTTEGELTTAEALKVI 81
Query: 75 EEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133
++ + + TGGEPL++ L Q RG ++A+ TNGT+ P I
Sbjct: 82 DDL---ADMGVPLILFTGGEPLMRADIWDLAQHARNRGLKMALSTNGTLITPDIARRIKE 138
Query: 134 S 134
S
Sbjct: 139 S 139
>gi|302036912|ref|YP_003797234.1| molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira
defluvii]
gi|300604976|emb|CBK41309.1| Molybdenum cofactor biosynthesis protein A [Candidatus Nitrospira
defluvii]
Length = 354
Score = 42.6 bits (99), Expect = 0.040, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 23 VAVFCRFSGCNLWSGR--EQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQ 77
+F R L S R DR + +C++C D D+ + R + ++ E
Sbjct: 11 PTIFDRLGR-PLRSLRLSVTDRCNLRCKYCMPED-DYAWL-----PRDTILTFEEMAELT 63
Query: 78 WITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE---IAVETNG 120
I E LTGGEPLL+ D+P IA+ +NG
Sbjct: 64 AIFTELGVDKVRLTGGEPLLRRDLPRFVRQLSENRRITEIALTSNG 109
>gi|330812181|ref|YP_004356643.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380289|gb|AEA71639.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 389
Score = 42.2 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q + E E +
Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGQELSTEQWFKVFRE---AREMGAAQLGFS 77
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G + G+D I +S +A +
Sbjct: 78 GGEPLVRQDLAELIGEARRLGFYTNLITSGIGLTEQKISDFKKAGLDHIQISFQASDEQV 137
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 138 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 188
>gi|153931596|ref|YP_001385507.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153934810|ref|YP_001388913.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. Hall]
gi|152927640|gb|ABS33140.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152930724|gb|ABS36223.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum A str. Hall]
Length = 300
Score = 42.2 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 64/231 (27%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKII 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+
Sbjct: 71 TMKNNIPVVDEGKCNFCGKCTNFCPNNAREYVGKDLTPQEIIKEIIKDEVFYEQSSGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKVRGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D +N + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIINDVNDNNKNIDETIKFI 241
>gi|218780045|ref|YP_002431363.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
alkenivorans AK-01]
gi|218761429|gb|ACL03895.1| Alkylsuccinate synthase (II) glycyl radical activating enzyme
(AssD2) [Desulfatibacillum alkenivorans AK-01]
Length = 319
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 46 QCRF---C-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
+C + C D G G V+++ D +E E G L+GGEP
Sbjct: 94 RCDYSLSCVDACPYGALEITGQAMTVEEILDEVESDRPFYENSGGGMTLSGGEPTAHPAF 153
Query: 102 PLIQA--LNKRGFEIAVETNGTIEPP------QGIDWICVSPKAGCDLKIKGGQELKLVF 153
RG ++TNG + D + K K K +
Sbjct: 154 SEKILAGAKARGLHTCLDTNGHCSWSVLESLLKHTDVVLFDLKHTDPEKHKEWTGVDNAL 213
Query: 154 PQVNVS 159
+ N++
Sbjct: 214 IKENLA 219
>gi|149927643|ref|ZP_01915896.1| pyrroloquinoline quinone biosynthesis protein PqqE [Limnobacter sp.
MED105]
gi|149823697|gb|EDM82925.1| pyrroloquinoline quinone biosynthesis protein PqqE [Limnobacter sp.
MED105]
Length = 398
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQ-GTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
LW E R C FC + + + + + + +++ G +
Sbjct: 14 PLWLLAELTYRCPLHCVFC---YNPVDYKSNTNELSTAEWKETMKQARALGAVQ---LGF 67
Query: 91 TGGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPP--------QGIDWICVSPKAGCDL 141
+GGEPLL+ D+ + A ++ G+ + T+G P G+D I VS +
Sbjct: 68 SGGEPLLRDDLEELVAYGHELGYYTNLITSGIGLKPTRLDALKAAGLDHIQVSFQDATQA 127
Query: 142 KIKGGQELKLVFPQVNVS 159
+ K ++ ++
Sbjct: 128 ANDALSDTKTFAKKLEIA 145
>gi|327480689|gb|AEA83999.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
stutzeri DSM 4166]
Length = 384
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + ++ A+ IE E +
Sbjct: 18 PLWLLAELTYRCPLQCPYCSNPLDFARS-----HDELSTAEWIEVFRQAREMGAAQLGFS 72
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
GGEPL+ Q V LI A G+ + T+G
Sbjct: 73 GGEPLVRQDLVELIAAARGLGYYTNLITSG 102
>gi|330808827|ref|YP_004353289.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376935|gb|AEA68285.1| coenzyme PQQ synthesis protein E [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 389
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + +Q + E E +
Sbjct: 23 PLWLLAELTYRCPLQCPYCSNPLDFAE--QGQELSTEQWFKVFRE---AREMGAAQLGFS 77
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G + G+D I +S +A +
Sbjct: 78 GGEPLVRQDLAELIGEARRLGFYTNLITSGIGLTEQKISDFKKAGLDHIQISFQASDEQV 137
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 138 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 188
>gi|323697567|ref|ZP_08109479.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
gi|323457499|gb|EGB13364.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
Length = 460
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 31 GCNLWSGREQDRLSAQC------RF-----CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC L G C + C F ++D L L + +
Sbjct: 72 GCPLDCGLCDAHRQHTCTALIEVTWRCDLGCPVCFASSGKAAPPDPSLDALDTLFDRVEL 131
Query: 80 TGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFE-IAVETNG 120
L+GGEP ++ +I+ RGF I + TNG
Sbjct: 132 ASGHCN--IQLSGGEPTVREDLPEIIRLGKARGFPFIQLNTNG 172
>gi|237813104|ref|YP_002897555.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei MSHR346]
gi|237503403|gb|ACQ95721.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia pseudomallei MSHR346]
Length = 227
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC +C +C + + + D +
Sbjct: 14 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQPRSQ-----PAEIEWDALLA 53
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF++ + + GT +DW
Sbjct: 54 FLARRVGLIDAVVFSGGEPSIDPALAASIHDVRRLGFKVGLHSAGTHPRRLAHLLPSLDW 113
Query: 131 ICVSPKAGCDLKIK 144
I + KA D
Sbjct: 114 IGLDVKAPFDDYAH 127
>gi|126179503|ref|YP_001047468.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanoculleus marisnigri JR1]
gi|125862297|gb|ABN57486.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanoculleus marisnigri JR1]
Length = 232
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 19 HAGRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GR A VF R GC A+C +C G + D++ +I E
Sbjct: 16 WRGRAACTVFLR--GCP-----------ARCFYCHN-IAIQDGED--LRDADEIIAMIRE 59
Query: 77 QWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEP 124
V +GGEP L Q L A G + + TNG
Sbjct: 60 SRTVAGA----VVFSGGEPTLQGQALAHLAAAARNMGLSVGLHTNGIFPR 105
>gi|330503316|ref|YP_004380185.1| putative radical-activating enzyme [Pseudomonas mendocina NK-01]
gi|328917602|gb|AEB58433.1| putative radical-activating enzyme [Pseudomonas mendocina NK-01]
Length = 261
Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
+L + +CR+C + G ++ ++ D ++++ + V +G
Sbjct: 49 HLACVLFCQGCAWRCRYCHNPELIRCGATNAEWSWAKVLDFLQQRQGLLQA----VVFSG 104
Query: 93 GEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPKA 137
GE LQ+ +P ++ + + GF++ + + G DW+ KA
Sbjct: 105 GEATLQLALPSAMRRVRELGFKVGLHSAGIKPASFGRALAHCDWVGFDVKA 155
>gi|330970881|gb|EGH70947.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
syringae pv. aceris str. M302273PT]
Length = 389
Score = 42.2 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +G + Q +++E E +
Sbjct: 22 PLWLLAELTYRCPLQCPYCSNPLDFAK--QGQELSTAQWFKVMQE---AREMGAAQIGFS 76
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + GF + T+G G+D I +S +A +
Sbjct: 77 GGEPLVRQDLAELIAEARRLGFYTNLITSGIGLTEEKIIAFKEAGLDHIQISFQASDEQV 136
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 137 NNMLAGSKKAFAQ-KLEMALAVKRHGYPMVLNFVTHRHNIDRIDKIIELCLA 187
>gi|312623314|ref|YP_004024927.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203781|gb|ADQ47108.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor kronotskyensis 2002]
Length = 231
Score = 42.2 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCN C FC + G++ D + E +
Sbjct: 23 FGGCNFS-----------CPFC---YNSELVNFKGKFMDDSIFF---EYLDKRKGIVDAV 65
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L I+ + ++ + ++TNG+
Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKQKNLLVKLDTNGSKP 102
>gi|222528368|ref|YP_002572250.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor bescii DSM 6725]
gi|222455215|gb|ACM59477.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor bescii DSM 6725]
Length = 231
Score = 42.2 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCN C FC + G++ D + E +
Sbjct: 23 FGGCNFS-----------CPFC---YNSELVNFKGKFMDDSIFF---EYLDKRKGIVDAV 65
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L I+ + ++ + ++TNG+
Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKQKNLLVKLDTNGSKP 102
>gi|254779259|ref|YP_003057364.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
B38]
gi|254001170|emb|CAX29129.1| Molybdenum cofactor biosynthesis protein A [Helicobacter pylori
B38]
Length = 321
Score = 42.2 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 29/178 (16%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
I L+ E+A+ TNG + S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKNAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
LK + S + + M G +E L + Y S+Q
Sbjct: 135 DALKNTLEGIEESLKVGLKLKLNMVV---MKGVNDDEILEL-LEYAKNR-----SIQI 183
>gi|78223014|ref|YP_384761.1| radical SAM family protein [Geobacter metallireducens GS-15]
gi|78194269|gb|ABB32036.1| Radical SAM [Geobacter metallireducens GS-15]
Length = 465
Score = 42.2 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 30 SGCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GC G C C F ++D++ L+E
Sbjct: 75 QGCPFDCGLCSAHAQMPCSVLLEVTDRCNLQCAVCFADSGRKDSVDTSLDRITWLLERAM 134
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
L+GGEP L+ D+P ++ A + GF I + TNG
Sbjct: 135 AAAGPCN--LQLSGGEPTLRDDLPEIVAAARRIGFSFIQLNTNG 176
>gi|238894042|ref|YP_002918776.1| pyruvate formate lyase II activase [Klebsiella pneumoniae
NTUH-K2044]
gi|238546358|dbj|BAH62709.1| putative pyruvate formate lyase activating enzyme [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 291
Score = 42.2 bits (98), Expect = 0.042, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 31/193 (16%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 23 IFNLQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIQTLRRESKCLRCTR 77
Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
C D + G +D L + + + G L+GGE L+Q
Sbjct: 78 CQQDVAECPSGAWEQIGRDVTLDNLLQEVLKDEVFFRASGGGVTLSGGEVLMQAGFAARF 137
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF-PQVNVSPEN 162
+Q L + G A+ET G + + + D KI + + + +N
Sbjct: 138 LQRLRQWGIRTAIETAGDSAFDRFLPVAEACNEVLFDFKIMEPERARSLLRMNQPRVLDN 197
Query: 163 YIGFDFERFSLQP 175
+ + +L P
Sbjct: 198 FRQLAARKINLIP 210
>gi|281357881|ref|ZP_06244366.1| glycyl-radical enzyme activating protein family [Victivallis
vadensis ATCC BAA-548]
gi|281315539|gb|EFA99567.1| glycyl-radical enzyme activating protein family [Victivallis
vadensis ATCC BAA-548]
Length = 300
Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 56/203 (27%), Gaps = 51/203 (25%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------------QC-----RFCD 51
G G AVF GC L + S +C C
Sbjct: 16 DGPGIRT---AVF--LKGCPLRCVWCHNPESWAGKAELLFNAAKCTVCGRCVPACPHGCH 70
Query: 52 --------------------TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
+ G +V+++ + + + + G
Sbjct: 71 KIEQGRHVFNREFCVGCGKCVKHCLSDALELCGQLRSVEEVISEVLKDKLFYDNSGGGIT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
L+GGEP+ Q D L++ + G + +ET G + DLK +
Sbjct: 131 LSGGEPMAQFDFTQELLKRAKEAGLHVCLETCGFAPQEYYARILPFVDIFLYDLKTVDAE 190
Query: 148 ELKLVFPQVNVSPENYIGFDFER 170
+ + + Q + F E
Sbjct: 191 KHRRLTGQDLAVIHGNLRFLDEN 213
>gi|121594117|ref|YP_986013.1| molybdenum cofactor biosynthesis protein A [Acidovorax sp. JS42]
gi|120606197|gb|ABM41937.1| GTP cyclohydrolase subunit MoaA [Acidovorax sp. JS42]
Length = 378
Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + I + R LTGGEPLL+
Sbjct: 48 DRCNFRCGYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVRKIRLTGGEPLLRK 107
Query: 100 DVP-------LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
D+ ++ L R ++ + TNG+ G+ + VS + D +
Sbjct: 108 DLENLVAQLAELRTLEGRVPDLTLTTNGSLLARKARALKAAGLRRVTVSLDSLQDDVFRR 167
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ V E E
Sbjct: 168 MNDVDFPVADVLAGIEAAQAAGLEHI 193
>gi|169351507|ref|ZP_02868445.1| hypothetical protein CLOSPI_02287 [Clostridium spiroforme DSM 1552]
gi|169291729|gb|EDS73862.1| hypothetical protein CLOSPI_02287 [Clostridium spiroforme DSM 1552]
Length = 298
Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 50/191 (26%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA---------------------- 45
E F T G G +F GCNL + S
Sbjct: 8 EKFATHDGPGIRT---TIF--LKGCNLHCPWCANPESWSIKPTLMYDLRKCIKCKKCVNV 62
Query: 46 -----------------QCRFCD----TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
+C +C + G +++ + D + + +
Sbjct: 63 CKQKAISFDKKFLYDRLKCIYCKKCSESCLTQALTFAGKELSINTIVDEVMKDKDYFDNS 122
Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
++GGEP +Q + LI+ L K+ IA+ET G + D+K
Sbjct: 123 NGGITISGGEPFVQFIAMMKLIKELKKQDLHIAIETTGNYSLEYLKQALPYLDLFLFDIK 182
Query: 143 IKGGQELKLVF 153
Q++K V
Sbjct: 183 HLNYQKIKDVI 193
>gi|187735362|ref|YP_001877474.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Akkermansia muciniphila ATCC BAA-835]
gi|187425414|gb|ACD04693.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Akkermansia muciniphila ATCC BAA-835]
Length = 250
Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+F GCNL+ + + G G R + +
Sbjct: 22 VACIFW-LRGCNLFCQYCYNVSLVR---------GTDSPAGDRTD-------YLDFLRDR 64
Query: 82 EKEGRYCVLTGGE-PLLQVDVPLIQALNKRGFEIAVETNGTIE 123
VL+GGE L +P+ + + + GF + ++TNGT
Sbjct: 65 VGFLDGVVLSGGECTLCPDLIPICRNIRQLGFAVKIDTNGTRP 107
>gi|213583935|ref|ZP_03365761.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 118
Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 21/107 (19%)
Query: 8 EIFLTLQGEGGHAGRVAVFC-RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN 66
E T+ G G F F GC +C +C G
Sbjct: 30 ESCGTVDGPGIR------FITFFQGC-----------LMRCLYCHNRDTW-DTHGGKEIT 71
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRG 111
V+ L + G +GGE +LQ + +A K G
Sbjct: 72 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEG 118
>gi|15678091|ref|NP_275205.1| molybdenum cofactor biosynthesis A (MoaA) related protein
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2621099|gb|AAB84569.1| molybdenum cofactor biosynthesis A (MoaA) related protein
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 250
Score = 42.2 bits (98), Expect = 0.044, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ +CR+C + + ++ D++ADLI+ E ++ GGEP LQ D+P
Sbjct: 45 CNFRCRYC-----FFKPSGCMNHSPDRIADLIQRIR--DETGVERVLIAGGEPTLQEDLP 97
Query: 103 LIQALNKRGFEIAVETNGTIE---PPQGIDWICVSPKAGCDLKI 143
+ + F + + NGT + V KA + K
Sbjct: 98 ELTEILAGDFHVTISPNGTRRDVLWMSTFHEVHVDLKALDEEKH 141
>gi|21227495|ref|NP_633417.1| molybdenum cofactor biosynthesis protein A [Methanosarcina mazei
Go1]
gi|24211981|sp|Q8PX29|MOAA_METMA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|20905871|gb|AAM31089.1| Molybdenum cofactor biosynthesis protein A [Methanosarcina mazei
Go1]
Length = 334
Score = 42.2 bits (98), Expect = 0.045, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + C C G G + + + +I E + R +
Sbjct: 40 CNLSCMYCHNEGAECCT-C--------GPVGNEMSPELICSIIRE---AAKFGVRKVKFS 87
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPL + D I A E++ TNG
Sbjct: 88 GGEPLFRKDFEDILACLPPLKEVSATTNG 116
>gi|326772988|ref|ZP_08232272.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces viscosus C505]
gi|326637620|gb|EGE38522.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces viscosus C505]
Length = 236
Score = 42.2 bits (98), Expect = 0.045, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 26/104 (25%), Gaps = 19/104 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF GC +R R + +
Sbjct: 19 TATVF--LQGCPWNCFYCHNRDLI----------------PARTPGQVAWEEVRALLRRR 60
Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
VLTGGE L Q + + GF++ + T G
Sbjct: 61 RGLLDGVVLTGGEALRQDALADAAREVIDMGFQVGLHTAGPYPR 104
>gi|222100310|ref|YP_002534878.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
gi|221572700|gb|ACM23512.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
Length = 355
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 15/123 (12%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
AVF F+GCNL Q+ D ++ G R + ++ DL E +
Sbjct: 127 AVF--FAGCNLDCLFCQNI--------DHKYMVKDG----RISEGKVVDLDELIEVAMNP 172
Query: 84 EGRYCVLTGGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
GG+P L A K+ I ETNG P + +S + G +K
Sbjct: 173 RVSCVCFFGGDPTPWSIFALEFARKLKKKRRICWETNGLAHPRIMENMARISLETGGTVK 232
Query: 143 IKG 145
I
Sbjct: 233 IDW 235
>gi|144900214|emb|CAM77078.1| Fe-S oxidoreductase [Magnetospirillum gryphiswaldense MSR-1]
Length = 437
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + +C C + G + ++ D I EQ + + GEP+L V
Sbjct: 162 RCNLRCAMC--GHEVWKSNSG--FMEMEVFDRILEQSKANGITTLHILSGQGEPMLHPQV 217
Query: 102 -PLIQALNKRGFEIAVETNG 120
+++ GF + + TNG
Sbjct: 218 FEMLEKAVAMGFNVGIVTNG 237
>gi|116754428|ref|YP_843546.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
gi|116665879|gb|ABK14906.1| Radical SAM domain protein [Methanosaeta thermophila PT]
Length = 342
Score = 42.2 bits (98), Expect = 0.046, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%)
Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALN 108
CD ++ ++D+ LI+E + + +LTGGEPL+ +
Sbjct: 3 CDHCYIDANDEMTDELSLDEGIRLIDEL---ADLKIPMLILTGGEPLMSRNFWAYAFHAK 59
Query: 109 KRGFEIAVETNGTIEPPQ--------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
++ A+ TNGT+ P+ GI ++ VS + + + +
Sbjct: 60 EKNLRCAISTNGTLITPEVAMLLREAGIRYVGVSLDSSSPEVHDRFRGVPGAHARAVQGL 119
Query: 161 ENYIGFDFE---RFSLQPMDGPFLEENTNLAIS-----YCFQNP 196
N + R +L + + LA+ +C +
Sbjct: 120 INARNAGLKTGLRVTLTRDNWYDIPALLKLALDLEIPRFCMYHL 163
>gi|206577451|ref|YP_002239375.1| glycyl-radical enzyme activating protein family [Klebsiella
pneumoniae 342]
gi|288936226|ref|YP_003440285.1| glycyl-radical enzyme activating protein family [Klebsiella
variicola At-22]
gi|290510719|ref|ZP_06550089.1| pyruvate formate-lyase 2-activating enzyme [Klebsiella sp. 1_1_55]
gi|206566509|gb|ACI08285.1| glycyl-radical enzyme activating protein family [Klebsiella
pneumoniae 342]
gi|288890935|gb|ADC59253.1| glycyl-radical enzyme activating protein family [Klebsiella
variicola At-22]
gi|289777435|gb|EFD85433.1| pyruvate formate-lyase 2-activating enzyme [Klebsiella sp. 1_1_55]
Length = 291
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 45/138 (32%), Gaps = 30/138 (21%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 23 IFNLQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIQTLRRESKCLRCTR 77
Query: 50 C--DTDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
C D + G +D L + + + G L+GGE L+Q
Sbjct: 78 CQQDVAECPSGAWEQIGRDVTLDNLLQEVLKDEVFFRASGGGVTLSGGEVLMQAGFAARF 137
Query: 104 IQALNKRGFEIAVETNGT 121
+Q L + G A+ET G
Sbjct: 138 LQRLRQWGIRTAIETAGD 155
>gi|319762446|ref|YP_004126383.1| molybdenum cofactor biosynthesis protein a [Alicycliphilus
denitrificans BC]
gi|330825703|ref|YP_004389006.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus
denitrificans K601]
gi|317117007|gb|ADU99495.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus
denitrificans BC]
gi|329311075|gb|AEB85490.1| molybdenum cofactor biosynthesis protein A [Alicycliphilus
denitrificans K601]
Length = 389
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 15/143 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY-CVLTGGEPLLQV 99
DR + +C +C V + + ++ + I G + LTGGEPLL+
Sbjct: 58 DRCNFRCSYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVHKIRLTGGEPLLRK 117
Query: 100 DVPL-------IQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
D+ L ++ R ++ + TNG+ G+ + VS + D +
Sbjct: 118 DLELLVEQLAGLRTTEGRVPDLTLTTNGSLLARKARALKAAGLQRVTVSLDSLDDAVFRR 177
Query: 146 GQELKLVFPQVNVSPENYIGFDF 168
++ +V E F
Sbjct: 178 MNDVDFPVAEVLAGIEAAQAAGF 200
>gi|74318188|ref|YP_315928.1| putative pyruvate radical-activating enzyme [Thiobacillus
denitrificans ATCC 25259]
gi|74057683|gb|AAZ98123.1| putative pyruvate radical-activating enzyme [Thiobacillus
denitrificans ATCC 25259]
Length = 229
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 24/129 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VFC GC +C +C + R + D + +
Sbjct: 21 AVVFC--QGCP-----------WRCGYCHNPDL-----IPPRGEREIPWDDVLSFLRRRQ 62
Query: 83 KEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPK 136
V +GGEP L V ++ + GF I + T G +DW+ + K
Sbjct: 63 GLLDAVVFSGGEPTLQAGLVDAVREVRALGFRIGLHTGGMYPKKLATVLPFVDWVGMDVK 122
Query: 137 AGCDLKIKG 145
A +
Sbjct: 123 APFADYAQI 131
>gi|189346577|ref|YP_001943106.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Chlorobium limicola DSM 245]
gi|189340724|gb|ACD90127.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Chlorobium limicola DSM 245]
Length = 244
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN +C +C + + N + V+
Sbjct: 40 GCNF-----------RCSYCHNPELV--EPERTVVNRRIPFHEVVRLVGRNRSCLDGVVV 86
Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQG 127
TGGEP + +P + K G + ++TNG+
Sbjct: 87 TGGEPAMHASLPESLRTFRKLGLRVKLDTNGSYPEMLD 124
>gi|312137064|ref|YP_004004401.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
gi|311224783|gb|ADP77639.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
Length = 274
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 26/171 (15%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
V+ SGCN C F + G V +L L+E+ +
Sbjct: 18 PRVWITLSGCNFNC--------LGC------FSIAKDIVGKPMTVKELVKLVEDSSRSYY 63
Query: 83 KE-GRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
+ + ++TGGEP L + R +I +E+NG + + +D + + G L
Sbjct: 64 GDLPKEIIITGGEPTLNKKYLKKLISSLRSSQIIIESNGYLLDDKYVDELIKAGLDGIML 123
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
+K E K+ S + + + + +++ NL I
Sbjct: 124 DLKAFDE-KIHKKYTGFSNKRILR-NLKNIC---------KKDINLIIKTI 163
>gi|23014386|ref|ZP_00054205.1| COG0535: Predicted Fe-S oxidoreductases [Magnetospirillum
magnetotacticum MS-1]
Length = 449
Score = 42.2 bits (98), Expect = 0.047, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + + + + D + + + + + + +
Sbjct: 176 CNLRCTM--------CGW----EIWKDNSG---FMEDAVFERVIAEGKASGIKTMHILAG 220
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GEP L V +++ GF++ + TNG
Sbjct: 221 QGEPFLHPRVFEMLEHAVAEGFQVGIVTNG 250
>gi|291547922|emb|CBL21030.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus sp.
SR1/5]
Length = 231
Score = 42.2 bits (98), Expect = 0.048, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 23/132 (17%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL +CD+ G+ + + I+ + + +
Sbjct: 105 QGCNLACSYCFGDEG---SYCDS----------GKMSKETAFKAIDYLFEHSDADKVLIT 151
Query: 90 LTGGEPLLQVDVPL----IQALNKRGFEIAVETNGT------IEPPQGIDWICVSPKAGC 139
GGEPLL VD+ + ++ TNGT + + G
Sbjct: 152 FFGGEPLLAVDLMKEIISYCKTKDKNVGYSMTTNGTLLNDEVNKLIVENKISTIISIDGD 211
Query: 140 DLKIKGGQELKL 151
K+ +K+
Sbjct: 212 KEKMIKTDIIKM 223
>gi|17549186|ref|NP_522526.1| putative ribonucleotide reductase activating transmembrane protein
[Ralstonia solanacearum GMI1000]
gi|17431438|emb|CAD18116.1| putative ribonucleotide reductase activating transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 246
Score = 42.2 bits (98), Expect = 0.048, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + + + +
Sbjct: 37 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHLQ---ERARGLDWRE 78
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
+ D + + + V +GGEPL + +P LI A G I + T G
Sbjct: 79 VLDFLGRRRNLLDA----VVFSGGEPLSEPRLPQLIDAARALGLRIGLHTGGIYP 129
>gi|254442555|ref|ZP_05056031.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Verrucomicrobiae bacterium DG1235]
gi|198256863|gb|EDY81171.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Verrucomicrobiae bacterium DG1235]
Length = 251
Score = 42.2 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
R + C LW Q C FC +DF + G R +V+ + ++ +
Sbjct: 24 RTA-CILWFTGCQ----MACPFCHNSDFATGE---GKRIDVEDTLAFLRKRRRMLDG--- 72
Query: 87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+GGE LL VP+I+A+ + G+ + V+TNG +
Sbjct: 73 -VTFSGGECLLSPSVVPMIRAVKELGYAVKVDTNGGMP 109
>gi|325662287|ref|ZP_08150902.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471539|gb|EGC74760.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 303
Score = 42.2 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 45/251 (17%), Positives = 78/251 (31%), Gaps = 65/251 (25%)
Query: 2 KLYSIKEIF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA----------- 45
Y EI ++ G+G VF F GC+L + S
Sbjct: 1 MKYP--EIMNIQKYSIHDGDGIRT---TVF--FKGCHLKCWWCHNPESQKFTPQLMFHAD 53
Query: 46 QCRFC---------------------------------DTDFVGIQGTKGGRYNVDQLAD 72
+C C D + G Y + +L
Sbjct: 54 RCGGCHACEQICSHHAVTVRDGIACTDRTKCELCRECLDHCVNNAREIVGKEYTISELMK 113
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK---RGFEIAVETNGTIEPPQGID 129
IE+ + E+ G L+GGE + Q + Q L K +G+ +A++T G
Sbjct: 114 EIEKDCMFYEESGGGVTLSGGEVMAQDMDYIEQLLKKLKRKGYNVAIDTCGYAPQENYER 173
Query: 130 WICVSPKAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSL-QPMDG--PFLEE 183
+ D+K ++ + ++ +S +I R + P+ G EE
Sbjct: 174 VLPYVDTFLYDIKTMDPEKHEKYIGKDNELILSNLRFISERGARIYIRIPVIGGVNDTEE 233
Query: 184 NTNLAISYCFQ 194
I++ Q
Sbjct: 234 EMEAMITFLKQ 244
>gi|218779575|ref|YP_002430893.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
alkenivorans AK-01]
gi|218760959|gb|ACL03425.1| Alkylsuccinate synthase (I) glycyl radical activating enzyme
(AssD1) [Desulfatibacillum alkenivorans AK-01]
Length = 320
Score = 42.2 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 21/170 (12%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN + +A C + G G V ++ D +E + G L+
Sbjct: 95 CN-----HSMQCAAVCPY------GALEITGKLLTVKEILDEVESDLPFYKNSGGGMTLS 143
Query: 92 GGEPLLQVDVPLIQA--LNKRGFEIAVETNGTIEPP------QGIDWICVSPKAGCDLKI 143
GGEP D RG ++TNG + ID + K K
Sbjct: 144 GGEPTAHPDFAEKLLAGAKARGLHTCLDTNGYCSWDILQRLLKYIDIVLFDLKHTDPEKH 203
Query: 144 KGGQELKLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAISYC 192
K + N++ G + + R + P +E++ A+ +
Sbjct: 204 KQWTGVDNALIMKNLARLTQTGVETWVRIPVIPGFNDSIEDH-QAAVEFL 252
>gi|300698169|ref|YP_003748830.1| ribonucleotide reductase activating transmembrane protein (nrdG)
[Ralstonia solanacearum CFBP2957]
gi|299074893|emb|CBJ54462.1| putative ribonucleotide reductase activating transmembrane protein
(nrdG) [Ralstonia solanacearum CFBP2957]
Length = 244
Score = 42.2 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 23/115 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F ++ G A VF +GC +C +C + R+
Sbjct: 35 FSSVDWPGQLA--AVVFI--AGCP-----------WRCHYCHNPHL----QARERH---L 72
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+ + V +GGEPL + LI A+ GF+ + T G
Sbjct: 73 HWTQVMAFLQSRRTLLDAVVFSGGEPLSEPRLPELIAAVRALGFKAGLHTAGIYP 127
>gi|187933498|ref|YP_001885706.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum B str. Eklund 17B]
gi|187721651|gb|ACD22872.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum B str. Eklund 17B]
Length = 300
Score = 42.2 bits (98), Expect = 0.049, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 19/172 (11%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN G+ D C T+ + + +D++ + + I K G L+
Sbjct: 84 CN-SCGKCTDI-------CPTNALNL---VAKEMTIDEVFKEVIKDEIFYSKSGGGVTLS 132
Query: 92 GGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
GGE L D + L++ + A+ET+G E ++ D+K +
Sbjct: 133 GGEVLSNGDFALDLLKKCKENYINTAIETSGFGETETLLNLSKFCDLVMFDIKNANNEFH 192
Query: 150 KLVFPQVN----VSPENYIGFDFERFSLQPMDGPF--LEENTNLAISYCFQN 195
K N + EN P+ F EEN I +N
Sbjct: 193 KKFIGVDNSLIIKNLENVSKVHDNIIIRIPLIPNFNDSEENIKKVIDLALKN 244
>gi|319793190|ref|YP_004154830.1| molybdenum cofactor biosynthesis protein a [Variovorax paradoxus
EPS]
gi|315595653|gb|ADU36719.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus
EPS]
Length = 386
Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + K ++ + + + R LTGGEPLL+
Sbjct: 53 DRCNFRCSYCMPKDVFDKDYKYLPHSALLSFEEMTRLARLFAAHGVRKIRLTGGEPLLRK 112
Query: 100 DVPLIQALNKR-------GFEIAVETNGTIEPPQGID-------WICVSPKAGCDLKIKG 145
++ + E+ + TNG++ + + VS + D +
Sbjct: 113 NIEALIEQLAEIRTPDGAPLELTLTTNGSLLARKAAALKAAGLQRVTVSLDSLDDAVFRH 172
Query: 146 GQELKLVFPQV 156
++ V
Sbjct: 173 MNDVDFPVADV 183
>gi|300022082|ref|YP_003754693.1| coenzyme PQQ biosynthesis protein E [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523903|gb|ADJ22372.1| coenzyme PQQ biosynthesis protein E [Hyphomicrobium denitrificans
ATCC 51888]
Length = 383
Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 27/187 (14%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E + +C +C Q ++ ++ G + T
Sbjct: 16 PLWLVLELTYKCPLKCPWCSNPVDFDQYRN--ELTTEEWKKVLRAGRRLGSLQ---LGFT 70
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEP--------PQGIDWICVSPKAGCDLK 142
GGEP+L L+ + G+ + T+G G+ + +S ++
Sbjct: 71 GGEPMLRNDLEELVAEADSLGYYTNLITSGVGLNKDRLRALKKAGLKQVQLSIQSNDRQH 130
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA-------ISYC--- 192
+ ++ +++++ + F P+ +E L + Y
Sbjct: 131 STKLVGVDVLDHKIDIAR-SIKAEGFPMVLNVPVSRFNIERTEALIDLAEDLGVEYLEFA 189
Query: 193 -FQNPKW 198
Q W
Sbjct: 190 NLQYYNW 196
>gi|57640225|ref|YP_182703.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
KOD1]
gi|57158549|dbj|BAD84479.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 42.2 bits (98), Expect = 0.050, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 46/169 (27%), Gaps = 58/169 (34%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFC 50
K Y+I G G VF GC L + +C C
Sbjct: 13 KRYAIH------DGPGIRT---TVFM--KGCPLRCWWCHNPEGISPRPQLMYLEYKCIHC 61
Query: 51 DT-----------------DFVGIQGTK-----------------GGRYNVDQLADLIEE 76
T + + G VD+L +E
Sbjct: 62 HTCVNVCPLRAITFDENEVQHIDREKCDVCGVCAEFCPTSALKLVGRTITVDELMKEVER 121
Query: 77 QWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+ G +GGEPL Q V ++A +R A++T+G
Sbjct: 122 DVNLYDSSGGGVTFSGGEPLFQPKFLVEALKASKERHINTALDTSGYAP 170
>gi|288942005|ref|YP_003444245.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Allochromatium vinosum DSM 180]
gi|288897377|gb|ADC63213.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Allochromatium vinosum DSM 180]
Length = 245
Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 28/107 (26%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VFC GC +CR+C G + + LI+ I
Sbjct: 38 AVVFC--QGCP-----------WRCRYC---------QNGDLLDTTAVESLIDWADIRAF 75
Query: 83 KEGRY-----CVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
R V +GGEP ++ G+ I + T+G
Sbjct: 76 LRQRVGLLDAVVFSGGEPTVQTALGAAMRETRALGYRIGLHTSGAYP 122
>gi|126174286|ref|YP_001050435.1| radical SAM domain-containing protein [Shewanella baltica OS155]
gi|125997491|gb|ABN61566.1| Radical SAM domain protein [Shewanella baltica OS155]
Length = 300
Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 22/185 (11%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + S +C CDT + + +++ ++G
Sbjct: 72 NLNNKPRIRWNSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQRHF-INGITVSG 130
Query: 93 GE-----PLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
GE P + I+A ++TNG++ + A DLK
Sbjct: 131 GEASLQLPFIIALFQGIKASESLSNLSCMLDTNGSLSLTGWHKLLPFLDGAMVDLKAWQQ 190
Query: 147 QELKLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
+ + + + + R P + +E LA +Y
Sbjct: 191 DTHRYITGRDDHAVFKSIQLLAQQQKLYEVRLLHIPSITDYEQEIEALA-TYL------- 242
Query: 200 LSVQT 204
L +Q
Sbjct: 243 LQLQL 247
>gi|308271162|emb|CBX27771.1| hypothetical protein N47_C18290 [uncultured Desulfobacterium sp.]
Length = 230
Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 33/186 (17%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
+F SGCN C +C + +V I + +
Sbjct: 22 IF--TSGCNF-----------ACPYCHNPEL-----AKNNPSVILKETEIYDFLKNRKNF 63
Query: 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPK 136
V++GGEP + + + + G+ + ++TNG+ + ID+I + K
Sbjct: 64 LDGVVISGGEPTIHSGIYAVCKNIKAIGYPVKLDTNGSNPEVIKNLIEKELIDYIAMDIK 123
Query: 137 AG---CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS--- 190
K + + + + I ++F S++P + E + I+
Sbjct: 124 TDPNRYSYFTKSASVSANILSSIQIIMNSKIDYEFRTTSVKPFVDVSVIEKISKIIAGAN 183
Query: 191 -YCFQN 195
Y Q+
Sbjct: 184 RYVLQH 189
>gi|222111161|ref|YP_002553425.1| molybdenum cofactor biosynthesis protein a [Acidovorax ebreus TPSY]
gi|221730605|gb|ACM33425.1| molybdenum cofactor biosynthesis protein A [Acidovorax ebreus TPSY]
Length = 378
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + I + R LTGGEPLL+
Sbjct: 48 DRCNFRCGYCMPKEVFDKHYRYLPHSDLLSFEEITRLARLFMAHGVRKIRLTGGEPLLRK 107
Query: 100 DVP-------LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
D+ ++ L R ++ + TNG+ G+ + VS + D +
Sbjct: 108 DLENLVAQLAELRTLEGRVPDLTLTTNGSLLARKARALKAAGLRRVTVSLDSLQDDVFRR 167
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ V E E
Sbjct: 168 MNDVDFPVADVLAGIEAAQAVGLEHI 193
>gi|16081418|ref|NP_393756.1| molybdenum cofactor synthesis-step 1 (MOCS1) related protein
[Thermoplasma acidophilum DSM 1728]
gi|10639419|emb|CAC11421.1| molybdenum cofactor synthesis-step 1 (MOCS1) related protein
[Thermoplasma acidophilum]
Length = 310
Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 26/125 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + DQ+ ++E + +T
Sbjct: 9 CNLRCKSCNAWQGKI-----------------FFPEDQIDKHLQEM---KNNGIKIVSVT 48
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPKAGCDLKIKG 145
GGEP L + V +I+ L + F + TNGT +D + +S + +
Sbjct: 49 GGEPTLNKNVVDIIRKLKENHFFTHIATNGTNPYVLRKLYPYLDAVTISLDSNIPEEHNA 108
Query: 146 GQELK 150
+ LK
Sbjct: 109 YRGLK 113
>gi|325264391|ref|ZP_08131122.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
gi|324030462|gb|EGB91746.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
Length = 304
Score = 41.8 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 49/170 (28%), Gaps = 63/170 (37%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QC----- 47
IF ++ G G VF GC L + S +C
Sbjct: 5 IFDIQRYSIHDGPGIRT---VVF--LKGCPLRCRWCSNPESWQEYPQLFYAPSRCIGCLN 59
Query: 48 ------------------RF--------------CDTDFVGIQGTKGGRYNVDQLADLIE 75
+ C T + ++ G +
Sbjct: 60 CVKNCPDEEITAENGLQIHWDRCINNKNLGWVKACPTKALTVK---GNWMTPKEAFTEAV 116
Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+ ++ G L+GGEPLLQ D V L++ + G AVET G +
Sbjct: 117 KDEEFYKRSGGGVTLSGGEPLLQADFAVALLKLCREHGIHTAVETTGCVP 166
>gi|297618570|ref|YP_003706675.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus voltae A3]
gi|297618630|ref|YP_003706735.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus voltae A3]
gi|297377547|gb|ADI35702.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus voltae A3]
gi|297377607|gb|ADI35762.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus voltae A3]
Length = 257
Score = 41.8 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ FS CN+ G Q+ Q + +Q+ + ++ +
Sbjct: 17 VPSSVVFFSDCNMKCGYCQNYDHMQ-------------ERMQELTAEQIFNGMDRMFSEA 63
Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
V++GGEP LQ+D L+ + + ++TNGT
Sbjct: 64 ------IVISGGEPTLQLDGVKELLIIARENNLKTKLDTNGTNPEAVKELLNENLLDYVA 117
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTN---LAISYCFQ 194
G N + EN +F+ P++ F E+ I YC
Sbjct: 118 MDVKCGFDNYLKFTNYKNENIENKSEEEFK-----PINDKFKEKMKQNILKIIKYCKD 170
>gi|317485566|ref|ZP_07944443.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
gi|316923246|gb|EFV44455.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
Length = 455
Score = 41.8 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G D R + +C C + +++++A ++
Sbjct: 84 GCPFDCGLCPDHAQHTCTGLIEVTGRCNLRCPVC---YASAGEQVAPEPSLERIAFQMDR 140
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
L+GGEP ++ D+P +I+ RGF I TNG
Sbjct: 141 LRQASGACN--VQLSGGEPTVRDDLPEIIRMAKARGFALIQCNTNG 184
>gi|92116484|ref|YP_576213.1| pyruvate formate-lyase activating [Nitrobacter hamburgensis X14]
gi|91799378|gb|ABE61753.1| Pyruvate formate-lyase activating [Nitrobacter hamburgensis X14]
Length = 275
Score = 41.8 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 19/121 (15%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
G G +F SGC +C +C G + D +
Sbjct: 49 DGPGLRV---VLFV--SGC-----------LLRCTYCHNPDTWH-LKDGTYVSADHVLRR 91
Query: 74 IEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
+ + G ++GGEP+ L + G A++T+G + +++
Sbjct: 92 LSDFVPALLPLGGGLTISGGEPMVQLAFTRRIFAGAKALGLHTAIQTSGFLGDRADENYL 151
Query: 132 C 132
Sbjct: 152 S 152
>gi|78777438|ref|YP_393753.1| putative radical-activating enzyme [Sulfurimonas denitrificans DSM
1251]
gi|78497978|gb|ABB44518.1| putative radical-activating enzyme [Sulfurimonas denitrificans DSM
1251]
Length = 193
Score = 41.8 bits (97), Expect = 0.054, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
+C +C + G+Y+ + D ++ + E VL+GGE VP
Sbjct: 1 MRCDYCYNKDIVFAKD--GKYSYKDILDFLKTRVNLLEA----VVLSGGEASSYNLVPFC 54
Query: 105 QALNKRGFEIAVETNGTIEPPQGI-------DWICVSPKAGCDLKIKGGQELKLVFPQVN 157
+ + GF+I ++TNGT D++ + KA + K
Sbjct: 55 LKIKELGFKIKLDTNGTNFLHVEELIKLNLLDYVALDYKAPMAKFTQITHSNKFDEFSKT 114
Query: 158 VSPENYIGFDFE 169
+ DFE
Sbjct: 115 LDFLIEQNIDFE 126
>gi|83311391|ref|YP_421655.1| Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
gi|82946232|dbj|BAE51096.1| Predicted Fe-S oxidoreductase [Magnetospirillum magneticum AMB-1]
Length = 442
Score = 41.8 bits (97), Expect = 0.054, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + + + + D + + + + + + +
Sbjct: 169 CNLRCTM--------CGW----EIWKDNSG---FMEDAVFERVIAEGKACGIKTMHILAG 213
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GEP L V +++ GF++ + TNG
Sbjct: 214 QGEPFLHPRVFEMLERAVAEGFQVGIVTNG 243
>gi|237796639|ref|YP_002864191.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Ba4 str. 657]
gi|229263902|gb|ACQ54935.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum Ba4 str. 657]
Length = 300
Score = 41.8 bits (97), Expect = 0.054, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 65/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKVI 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+ G
Sbjct: 71 TMKNNIPVVDEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKVRGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D EN + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIIKDVNDNNENIDETIKFI 241
>gi|158319189|ref|YP_001511696.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158139388|gb|ABW17700.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
Length = 292
Score = 41.8 bits (97), Expect = 0.055, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 41 DRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+R + C FC T ++ ++EE + + GEPLL
Sbjct: 13 NRCNLACSFCPETKRA------AEFMKIESFHKILEEIKPFADYIYFHVK---GEPLLHP 63
Query: 100 -DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
+ +++GF++ + TNGT+ Q +
Sbjct: 64 AIDQFLDLSHEKGFQVNITTNGTLIKKQKDKIL 96
>gi|222100725|ref|YP_002535293.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359]
gi|221573115|gb|ACM23927.1| AstB/chuR-related protein [Thermotoga neapolitana DSM 4359]
Length = 323
Score = 41.8 bits (97), Expect = 0.055, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 33/182 (18%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
R + +C+ C + + +++ +L+ + G L GGEPLL
Sbjct: 14 TRCNFRCKHC---YCEAGEPHPNELSFEEIKELMIDLRELGVWA---LDLVGGEPLLHPH 67
Query: 100 DVPLIQALNKRGFEIAVETNG---TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
+ ++ + G + + TNG T E + I G L+ + V
Sbjct: 68 LLDILAFGREIGQRLMINTNGSLATREMVRKIKRANPDVLIGVSLEGPDPETNDYVRGNG 127
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR-------LSVQTHKFIG 209
N +F + E + I WR LS+ K +G
Sbjct: 128 NFERAIEGIKNF------------ISEGFQVTILNVINRMNWRKFEDMVKLSL---K-LG 171
Query: 210 IR 211
+R
Sbjct: 172 VR 173
>gi|291279048|ref|YP_003495883.1| pyruvate-formate lyase-activating enzyme [Deferribacter
desulfuricans SSM1]
gi|290753750|dbj|BAI80127.1| pyruvate-formate lyase-activating enzyme [Deferribacter
desulfuricans SSM1]
Length = 327
Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL C FC + Q T +++QL + E+ G
Sbjct: 82 GCNLQ-----------CPFCQNWQISTQITYREEISIEQLYQIAIERGSIG------IAY 124
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EP + + + + + +G + + TNG I + DLK +
Sbjct: 125 TYNEPTIWYEFVLDCSKYFHSKGLKNILVTNGYINEEPLTHLLPYIDAVNVDLKGFTQEF 184
Query: 149 LKLVFPQVN 157
K V ++
Sbjct: 185 YKWVKGNLD 193
>gi|297526122|ref|YP_003668146.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
gi|297255038|gb|ADI31247.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
Length = 348
Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 44/188 (23%), Gaps = 36/188 (19%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN +C +C ++ + + +L+E
Sbjct: 90 GCNF-----------RCPWCQNYYISWSKPDPDKSIYMEPKELVELAVKLKNHG---LCA 135
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+ EP + + + + K G +A+ TNG + +
Sbjct: 136 SFNEPTIHLEYLLDVGEYAVKHGLYLAMVTNGYMTLKTIKHLLENGYTGFSIDIKGCPYT 195
Query: 149 LKLVFPQVNVSPENYIGFDFER------FSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
K + + L + + N
Sbjct: 196 YKKYLSANPLIIYRNAKTILDHGGHVEMVYLV----VPKANDWKECYEWIINN------- 244
Query: 203 QTH-KFIG 209
H K++G
Sbjct: 245 --HLKYLG 250
>gi|76802053|ref|YP_327061.1| molybdenum cofactor biosynthesis protein A [Natronomonas pharaonis
DSM 2160]
gi|76557918|emb|CAI49502.1| molybdenum cofactor biosynthesis protein A [Natronomonas pharaonis
DSM 2160]
Length = 326
Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 11/172 (6%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + D+I + E + + TGGEP+L+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPMEPAEDEMSTDDVIRFLEVAAEFDIQSAKFTGGEPMLRE 78
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKGGQELKLV 152
D+ I E ++ TNGT P G++ + VS A K
Sbjct: 79 DLETIVRRTPDSIETSLTTNGTFLPDRATALVDAGLERVNVSQDA-LSPKAFQTVTKSSA 137
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
+ V + + L + + + N L +Q
Sbjct: 138 YDDVMAGIDAALDAGLAPVKLNMVVFEQTAGYVPEMVDHVADNEG--LQLQL 187
>gi|301155020|emb|CBW14483.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 57
Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 180 FLEENTNL-AISYCFQNPKWRLSVQTHKFIGI 210
LE T L ++ KW+LS+QTHK IGI
Sbjct: 25 LLETITQLGQLNLRANKLKWQLSLQTHKIIGI 56
>gi|121535351|ref|ZP_01667163.1| pyruvate formate-lyase activating enzyme [Thermosinus
carboxydivorans Nor1]
gi|121306043|gb|EAX46973.1| pyruvate formate-lyase activating enzyme [Thermosinus
carboxydivorans Nor1]
Length = 252
Score = 41.8 bits (97), Expect = 0.056, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GC L +C+FC G VD + + G
Sbjct: 34 LAGCAL-----------RCKFCHNPDTWQPT--GRPVTVDAVLSDLARYEAFYRFSGGGV 80
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
++GGEPLLQ D L +A K+G ++T G
Sbjct: 81 TVSGGEPLLQADFIAALFRACRKQGIHTTLDTAGF 115
>gi|317010985|gb|ADU84732.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
SouthAfrica7]
Length = 321
Score = 41.8 bits (97), Expect = 0.058, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 27/176 (15%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T G + + L +++E I ++ + +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLNFFDGEE-----LLPLDNVLEFLKIAIDEGIKKIRITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIARLHAYNKEVALVLSTNGFLLKKMAKGLKDAGLVQVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
LK + + + + M G +E +L + Y R+ +
Sbjct: 135 DALKNALEGIEEALKVGLKVKINMVV---MKGVNDDEILDL-LEYAKDK---RIQI 183
>gi|294496604|ref|YP_003543097.1| radical SAM protein [Methanohalophilus mahii DSM 5219]
gi|292667603|gb|ADE37452.1| Radical SAM domain protein [Methanohalophilus mahii DSM 5219]
Length = 492
Score = 41.8 bits (97), Expect = 0.058, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 30 SGCNLWSGRE----------QDRLSAQCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEEQ 77
+GC L G ++ +C C F + + Q+ D+++
Sbjct: 71 AGCPLSCGLCPSHKTTTLLANIDVTNRCNLNCPICFANAKTRGFIYEPSFQQIEDMLKIL 130
Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
+GGEP ++ D+P +IQ + GF +I + TNG
Sbjct: 131 REEKPTPCAAIQFSGGEPTVRDDLPAMIQKAKELGFVQIQIATNG 175
>gi|17221315|emb|CAA05050.2| benzylsuccinate synthase activating enzyme [Thauera aromatica]
Length = 331
Score = 41.8 bits (97), Expect = 0.058, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 51/175 (29%), Gaps = 60/175 (34%)
Query: 1 MKLYSIKEI--FLTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------Q 46
MK+ I EI F +LQ G G +F GC L + + +
Sbjct: 1 MKIPLITEIQRF-SLQDGPGIRT---TIF--LKGCPLRCPWCHNPETQDARQEFYFYPDR 54
Query: 47 CRFC---------DTDFVGIQGTK-----------------------------GGRYNVD 68
C C +T + G +VD
Sbjct: 55 CVGCGRCVAVCPAETSRLVRNSDGRTIVQIDRTNCQRCMRCVAACLTEARAIVGQHMSVD 114
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
++ G ++GG+PL D L L+ RG +A+ET+
Sbjct: 115 EILREALSDSAFYRNSGGGVTISGGDPLYFPDFTRQLASELHARGVHVAIETSCF 169
>gi|319760860|ref|YP_004124797.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alicycliphilus denitrificans BC]
gi|330822765|ref|YP_004386068.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alicycliphilus denitrificans K601]
gi|317115421|gb|ADU97909.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alicycliphilus denitrificans BC]
gi|329308137|gb|AEB82552.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Alicycliphilus denitrificans K601]
Length = 226
Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 26/128 (20%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR+A VFC GC G +C G +++
Sbjct: 25 GRLAAVVFC--QGCPWRCG-----------YCHN-----TGLLDAATPTAHAWADVQQLL 66
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWIC 132
V +GGEP LQ +P + + GF + T G +DW+
Sbjct: 67 HARRGLLDGVVFSGGEPTLQAGLPDALARVRAMGFATGLHTAGMYPERLATLLPLLDWVG 126
Query: 133 VSPKAGCD 140
+ KA
Sbjct: 127 LDIKAPLH 134
>gi|170735545|ref|YP_001774659.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia MC0-3]
gi|169821583|gb|ACA96164.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia MC0-3]
Length = 374
Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN G R S TD+ + + R + QL + G ++ R +T
Sbjct: 52 CNFRCGYCMPRESFG-----TDYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101
Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
GGEPLL+ ++ + + EIA+ TNG+ G+ + VS A
Sbjct: 102 GGEPLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVSLDA 161
Query: 138 GCDLKIKGGQELKLVFPQV 156
D + + + +V
Sbjct: 162 LDDAVFRRMNDADVPVARV 180
>gi|84490112|ref|YP_448344.1| glycyl radical activating protein [Methanosphaera stadtmanae DSM
3091]
gi|84373431|gb|ABC57701.1| predicted glycyl radical activating enzyme [Methanosphaera
stadtmanae DSM 3091]
Length = 238
Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 62/167 (37%), Gaps = 41/167 (24%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC+L +C++C + ++ R++++++ + I++ + V+
Sbjct: 24 GCDL-----------RCKYCHNPQL-LKNESLSRWDIEEVEEEIDKNVDFIDA----IVI 67
Query: 91 TGGEPLLQVDVPLIQALNKRGFE--IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+GGE LL +DV + F+ I ++TNG +
Sbjct: 68 SGGEALLHIDVVKHYIQKAKEFDLLIKLDTNGLHP-----------------------EN 104
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
L + ++ + + + + + ++E+ N +I +
Sbjct: 105 LNQIIDDLDYVAIDIKAPLDKYYKISDVYPNNVKESINKSIDIILNH 151
>gi|300935958|ref|ZP_07150911.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 21-1]
gi|300949389|ref|ZP_07163398.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 116-1]
gi|300451204|gb|EFK14824.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 116-1]
gi|300458894|gb|EFK22387.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 21-1]
gi|315286769|gb|EFU46188.1| glycyl-radical enzyme activating family protein [Escherichia coli
MS 110-3]
Length = 200
Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
KG R +V + +E++ + G L+GGEPL Q + L++A +G+ A+ET
Sbjct: 2 KGKRMSVTAVMRELEKEENLYRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIET 61
Query: 119 NGT 121
+G
Sbjct: 62 SGF 64
>gi|284097785|ref|ZP_06385774.1| heme d1 biosynthesis protein NirJ [Candidatus Poribacteria sp.
WGA-A3]
gi|283830685|gb|EFC34806.1| heme d1 biosynthesis protein NirJ [Candidatus Poribacteria sp.
WGA-A3]
Length = 454
Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 14/159 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
R + +C C D G + ++ LI++ + V+TGGEPL++ D
Sbjct: 51 RCNLKCDHCYLDATTKAGGGSDELSTEECYRLIDQIAEVNKGC--LLVITGGEPLVRPDI 108
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC--------VSPKAGCDLKIKGGQELKLV 152
+ + + +GF + TNG + + + +S + K + +
Sbjct: 109 LDIARHAVGQGFMVVFGTNGMLINDRLAQELVEIGVMGMGISIDSLDAGKHNAFRGIPGA 168
Query: 153 FPQVNVSPENYIGFDFE---RFSLQPMDGPFLEENTNLA 188
+ E + FS QPM+ L + + A
Sbjct: 169 WEAAVAGIEACKRNGLQFQVHFSAQPMNYKELPDVIDWA 207
>gi|171056939|ref|YP_001789288.1| pyrroloquinoline quinone biosynthesis protein PqqE [Leptothrix
cholodnii SP-6]
gi|170774384|gb|ACB32523.1| coenzyme PQQ biosynthesis protein E [Leptothrix cholodnii SP-6]
Length = 386
Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R C FC K ++ E G + + +
Sbjct: 17 PLWLLAEVTYRCPLHCVFCYNPLDFAAQGKAQELPTADWLRVLREARALGAVQCGF---S 73
Query: 92 GGEPL-LQVDVPLIQALNKRGFEIAVETNG 120
GGEPL +I ++ GF + T+G
Sbjct: 74 GGEPLERDDLEEMIAEAHRLGFYTNLLTSG 103
>gi|289674880|ref|ZP_06495770.1| radical SAM domain protein [Pseudomonas syringae pv. syringae FF5]
Length = 40
Score = 41.8 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 183 ENTNLAISYCFQNPKWRLSVQTHKFI 208
+ +LA N RL +Q HK +
Sbjct: 8 KGRDLADWIVADNLPVRLQMQLHKIL 33
>gi|288930733|ref|YP_003434793.1| radical SAM protein [Ferroglobus placidus DSM 10642]
gi|288892981|gb|ADC64518.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
Length = 335
Score = 41.8 bits (97), Expect = 0.061, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
R + +C +C + + ++ +IE + TGGEPLL+ D
Sbjct: 33 RCNMRCHYC-----AYWMWRCDEMSTVEVKRMIE---GAADVGMAVYTATGGEPLLRRDV 84
Query: 101 VPLIQALNKRGFEIAVETNG 120
+++ G + TNG
Sbjct: 85 NEILRKAKDCGLYTMLVTNG 104
>gi|327310238|ref|YP_004337135.1| pyruvate formate-lyase activating enzyme [Thermoproteus uzoniensis
768-20]
gi|326946717|gb|AEA11823.1| pyruvate formate-lyase activating enzyme [Thermoproteus uzoniensis
768-20]
Length = 361
Score = 41.8 bits (97), Expect = 0.063, Method: Composition-based stats.
Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 35/198 (17%)
Query: 7 KEI---FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
EI F + G A+ GCN C +C + + G
Sbjct: 81 VEIKPLFH------FYPGTSAMTISTWGCNFP-----------CAWCQNWQLSKAASLTG 123
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT 121
Y + ++E E ++ EP L + L + RG ++ TNG
Sbjct: 124 TYAPPE--KIVE---WALENGDSGVNVSFNEPTLLAEYAEDLFRLARARGLHASINTNGY 178
Query: 122 IEP-------PQGIDWICVSPKAGCDLKIKG-GQELKLVFPQVNVSPENYIGFDFERFSL 173
+ G++ + V K G + EL V ++ + +F +
Sbjct: 179 LSEEAVERLAKAGMEAMNVDIKGGRSTYRRWLAAELDKVLATSRLAKSLGVHLEFTYLVI 238
Query: 174 QPMDGPFLEENTNLAISY 191
++ EE + S+
Sbjct: 239 PGVNDGDAEEVIDAVASF 256
>gi|269121625|ref|YP_003309802.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
gi|268615503|gb|ACZ09871.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
Length = 260
Score = 41.8 bits (97), Expect = 0.063, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 39/178 (21%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF F GC L C +C +
Sbjct: 19 DGPGIRT---TVF--FKGCPLN-----------CMWCSNPESQSFKPEPIWDKIKKDYII 62
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ ++I + + L+GGE L + L++ K A ET
Sbjct: 63 TGECKTVEEIMEIILKDMDYYIESEGGVTLSGGEVLSHPEFAAELLKECKKHNIHTACET 122
Query: 119 NGTIEPP--------QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+ P + I + + K G LK + + + F
Sbjct: 123 SAFSSPEIFNNFTEYPDLLIIDIKHYDNSEHIKKTGVSLKPILKNIKHAILKKKNVLF 180
>gi|160937702|ref|ZP_02085062.1| hypothetical protein CLOBOL_02594 [Clostridium bolteae ATCC
BAA-613]
gi|158439347|gb|EDP17099.1| hypothetical protein CLOBOL_02594 [Clostridium bolteae ATCC
BAA-613]
Length = 230
Score = 41.8 bits (97), Expect = 0.064, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 54 FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRG 111
+ + G +YN ++L I + G +GGEPL ++ + + +++RG
Sbjct: 24 YADAREMMGRKYNEEELLTEILKDRQYYGMSGGGVTFSGGEPLYYSEIIGAVGEQMHRRG 83
Query: 112 FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ VET G + D D K + K +
Sbjct: 84 YNTLVETCGHVPQKALEDINGHVDSIYYDFKQIDPDKHKEL 124
>gi|331086093|ref|ZP_08335176.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407016|gb|EGG86521.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 303
Score = 41.8 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 79/251 (31%), Gaps = 65/251 (25%)
Query: 2 KLYSIKEIF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA----------- 45
Y EI ++ G+G VF F GC+L + S
Sbjct: 1 MKYP--EIMNIQKYSIHDGDGIRT---TVF--FKGCHLKCWWCHNPESQKFTPQLMFHAD 53
Query: 46 QCRFC---------------------------------DTDFVGIQGTKGGRYNVDQLAD 72
+C C D + G Y + +L
Sbjct: 54 RCGGCHACEQICSHHAVTVRDGIACTDRTKCELCRECLDHCVNNAREIVGKEYTISELMK 113
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK---RGFEIAVETNGTIEPPQGID 129
IE+ + E+ G L+GGE + Q + Q L K +G+ +A++T G
Sbjct: 114 EIEKDCMFYEESGGGVTLSGGEVMAQDMDYIEQLLKKLKRKGYNVAIDTCGYAPQENYER 173
Query: 130 WICVSPKAGCDLKIKGGQELKLVF---PQVNVSPENYIGFDFERFSL-QPMDG--PFLEE 183
+ D+KI ++ + ++ +S +I R + P+ G EE
Sbjct: 174 VLPYVDTFLYDIKIMDPEKHEKYMGKDNELILSNLRFISERGARIYIRIPVIGGVNDTEE 233
Query: 184 NTNLAISYCFQ 194
I++ Q
Sbjct: 234 EMEAMITFLKQ 244
>gi|18314236|ref|NP_560903.1| pyruvate formate-lyase activating enzyme-like protein [Pyrobaculum
aerophilum str. IM2]
gi|18161832|gb|AAL65085.1| pyruvate formate-lyase activating enzyme homolog [Pyrobaculum
aerophilum str. IM2]
Length = 364
Score = 41.8 bits (97), Expect = 0.065, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 21/146 (14%)
Query: 18 GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEE 76
+ G AV GCN +C + G +++ +
Sbjct: 92 FYPGTSAVTISTWGCNFPCA-----------WCQNWHLSKTASPAGAYVPPERVVE---- 136
Query: 77 QWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
E ++ EP L + + + RG ++ TNG + + + + +
Sbjct: 137 --WALENGDSGVNVSFNEPTLLAEYAEEVFRLARARGLHASINTNGYL-TEEAVRRLAEA 193
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSP 160
G ++ IKGG+E + N
Sbjct: 194 GMEGMNIDIKGGRETYRRWLAANFDK 219
>gi|261823320|ref|YP_003261426.1| glycyl-radical enzyme activating protein family [Pectobacterium
wasabiae WPP163]
gi|261607333|gb|ACX89819.1| glycyl-radical enzyme activating protein family [Pectobacterium
wasabiae WPP163]
Length = 305
Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Query: 33 NLWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
+ RE+ C C T + ++ G R +V ++ ++++ + G L+
Sbjct: 81 PFFIDRERCIQCGDCTHVCPTQALEMK---GKRMSVGEVVRELQKEENLFRRSGGGITLS 137
Query: 92 GGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP---PQGIDWICVSPKAGCDLKIKGG 146
GGEPL Q + L++A ++G+ A+ET G W+ ++ +
Sbjct: 138 GGEPLAQPEFARELLKACKEKGWHTAIETTGFTTKEVVEDVFPWVDLALTDIKAINPMVH 197
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPM 176
+E V + I F P+
Sbjct: 198 EENTGVNNSRILENLIRISFITNVIVRIPV 227
>gi|213405157|ref|XP_002173350.1| anaerobic ribonucleoside triphosphate reductase
[Schizosaccharomyces japonicus yFS275]
gi|212001397|gb|EEB07057.1| anaerobic ribonucleoside triphosphate reductase
[Schizosaccharomyces japonicus yFS275]
Length = 826
Score = 41.8 bits (97), Expect = 0.066, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D 100
R + C +C + + + + +I + V++GGEP +
Sbjct: 635 RCNLACPWCHNGPIVRGKRDS--FTAEDVFRIITA------SRHKNLVISGGEPTIHPQL 686
Query: 101 VPLIQALNKRGFEIAVETNGTIEPP 125
+P ++ L K G + +++NGT
Sbjct: 687 IPFLRLLKKAGISVKLDSNGTSPES 711
>gi|297155501|gb|ADI05213.1| pyrroloquinoline quinone biosynthesis protein PqqE [Streptomyces
bingchenggensis BCW-1]
Length = 368
Score = 41.8 bits (97), Expect = 0.067, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC L C +C + + ++ A+++ + GE + L
Sbjct: 17 GCPL-----------HCPYCSNPLELV--RRSRELTGEEWAEVLRQ---AGELGVVHTHL 60
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
+GGEPLL+ D+ + A G + T+G
Sbjct: 61 SGGEPLLRTDLETITAAAESAGIYTQLVTSG 91
>gi|120611327|ref|YP_971005.1| molybdenum cofactor biosynthesis protein A [Acidovorax citrulli
AAC00-1]
gi|120589791|gb|ABM33231.1| GTP cyclohydrolase subunit MoaA [Acidovorax citrulli AAC00-1]
Length = 386
Score = 41.4 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 29/179 (16%)
Query: 16 EGGHAGRVAVFC-----RFSGCNLWSGR--EQDRLSAQCRFCDTDFVGIQGTKGGRY-NV 67
EG AG A + R L R DR + +C +C V + + ++
Sbjct: 28 EGPFAG-PAGWLADALGR----PLRDLRISVTDRCNFRCSYCMPKEVFGKDYPYLSHGDL 82
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA--------VETN 119
++ + R LTGGEPLL+ + + G A + TN
Sbjct: 83 LSFEEITRLARVFLAHGVRKIRLTGGEPLLRRHLENLVEQLA-GLRTAEGRVPDLTLTTN 141
Query: 120 GT-------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
G+ G+ + VS + D + ++ +V E FER
Sbjct: 142 GSLLARKARALRDAGLARLTVSLDSLQDSVFRRMNDVDFPVAEVLSGIEAAQAAGFERI 200
>gi|257063874|ref|YP_003143546.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
20476]
gi|256791527|gb|ACV22197.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
20476]
Length = 397
Score = 41.4 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C C + G + D+ +I++ + +
Sbjct: 51 CNLK-----------CVHC---YAGSDAQRYDELTTDEAKTMIDDL---AAFGCPVLLFS 93
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
GGEP + V L+ ++G + + TNGT+ P+
Sbjct: 94 GGEPTIRPDLVELMGYAKQKGMRVVISTNGTLITPE 129
>gi|20089004|ref|NP_615079.1| molybdenum cofactor biosynthesis protein A [Methanosarcina
acetivorans C2A]
gi|24211983|sp|Q8TUG2|MOAA_METAC RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|19913858|gb|AAM03559.1| molybdenum cofactor biosynthesis protein A [Methanosarcina
acetivorans C2A]
Length = 334
Score = 41.4 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + C C G+ G + + + ++ E + R +
Sbjct: 40 CNLSCMYCHNEGADCCS-C--------GSLGHEMSPELICGIVRE---AAKFGVRKVKFS 87
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPL + D I A E++ TNG
Sbjct: 88 GGEPLFRKDFEEILACLPPLKEVSATTNG 116
>gi|78355325|ref|YP_386774.1| radical SAM domain-containing protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78217730|gb|ABB37079.1| radical SAM domain protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 238
Score = 41.4 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN S + +C C + Q + + + ++ K V+
Sbjct: 21 GCNT-SVIFMGGCNMRCPTCHNYTIAWQPEQVPAISRQSILTYLK----NRAKWIDGVVV 75
Query: 91 TGGEPLLQVDVPLI-QALNKRGFEIAVETNGTIE 123
TGGE L + + + G I ++TNG
Sbjct: 76 TGGEATLVPQLETVLHDIKALGMRIKLDTNGMRP 109
>gi|308186794|ref|YP_003930925.1| Coenzyme PQQ synthesis protein E [Pantoea vagans C9-1]
gi|308057304|gb|ADO09476.1| Coenzyme PQQ synthesis protein E [Pantoea vagans C9-1]
Length = 388
Score = 41.4 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + +Q ++ + G + +
Sbjct: 19 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELSTEQWIEVFRQARAMGSVQ---LGFS 73
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+P I+A GF + T+G G+D I +S +A +
Sbjct: 74 GGEPLVRKDLPELIKAARDLGFYTNLITSGIGLTEKKLDAFSEAGLDHIQISFQASDETL 133
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C +
Sbjct: 134 NAALAGSKKAF-QQKLEMAKAVKAHGYPMVLNFVLHRHNIDQIDKIIDLCIE 184
>gi|317012578|gb|ADU83186.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
Lithuania75]
Length = 321
Score = 41.4 bits (96), Expect = 0.071, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 27/176 (15%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
I L+ E+A+ TNG + D S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNNEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
LK + S + + M +E L + Y R+ +
Sbjct: 135 DALKNTLEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR---RIQI 183
>gi|329945461|ref|ZP_08293205.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328528951|gb|EGF55889.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 253
Score = 41.4 bits (96), Expect = 0.072, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 36/147 (24%), Gaps = 19/147 (12%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF GC C +C + T G + +
Sbjct: 36 TATVF--LQGCPWN-----------CFYCHNQALIPARTPG-----QVAWEEVRALLRRR 77
Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
VLTGGE L Q + GF++ + T G
Sbjct: 78 RGLLDGVVLTGGEALRQDALADAAHEVIDMGFQVGLHTAGPYPRRLRDMIEAGFVDWVGL 137
Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFD 167
+ + V + N + + +
Sbjct: 138 DIKALPEHYEQVVGRANAAAKAWESLK 164
>gi|313683432|ref|YP_004061170.1| GTP cyclohydrolase subunit moaa [Sulfuricurvum kujiense DSM 16994]
gi|313156292|gb|ADR34970.1| GTP cyclohydrolase subunit MoaA [Sulfuricurvum kujiense DSM 16994]
Length = 321
Score = 41.4 bits (96), Expect = 0.072, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C + F + + ++L + I+ ++ ++ + +TGGEPLL+
Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKEN--LLSFEELFEFIK---VSIDEGIKKIRITGGEPLLR 73
Query: 99 VDVPLIQAL---NKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKGGQE 148
D+ + K ++A+ TN G+ + VS + + +
Sbjct: 74 EDLDTFIKMIYDYKNDIDLAMTTNAFLLKGSAKKLYDAGLRRLNVSIDSLKPEIAEAIAK 133
Query: 149 LKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQN 195
K V P V E + F+ + ++ PM G E + + YC
Sbjct: 134 -KDVLPNVLAGIEEALRVGFKVKVNMVPMKGMNEGEVLD-VLEYCKDR 179
>gi|269218854|ref|ZP_06162708.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211965|gb|EEZ78305.1| pyruvate formate-lyase 1-activating enzyme [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 295
Score = 41.4 bits (96), Expect = 0.072, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 63/196 (32%), Gaps = 29/196 (14%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F +GC +C +C Q G VD L
Sbjct: 68 VDGPGIRM---TIF--LAGC-----------GLRCLYCHNPDTF-QMRDGEPVEVDDLLR 110
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT------IEP 124
I+ T G ++GGE ++Q L++ + G V+T+G
Sbjct: 111 RIKRYRKTLNASGGGITISGGEAMMQPRFVAKLLEGAKELGVHTCVDTSGFLGRNVTEAM 170
Query: 125 PQGIDWICVSPKAGCDLKIKG--GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE 182
ID + + KAG K +L+ + E I + RF L P E
Sbjct: 171 LDNIDLVLLDVKAGIPELYKKVTSGDLQPTIDFGDRLAERGIET-WIRFVLVPG-LTDSE 228
Query: 183 ENTNLAISYCFQNPKW 198
EN + P
Sbjct: 229 ENVEAVAQIVEKWPNV 244
>gi|119897481|ref|YP_932694.1| pyrroloquinoline quinone biosynthesis protein PqqE [Azoarcus sp.
BH72]
gi|119669894|emb|CAL93807.1| pyrroloquinoline quinone synthesis protein E [Azoarcus sp. BH72]
Length = 384
Score = 41.4 bits (96), Expect = 0.072, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 21/169 (12%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC DF + + ++ E G + +
Sbjct: 16 PLWLLAEVTYRCPLHCAFCYNPVDFARDDTE----LSTEDWLRVLREARAAGSVQCGF-- 69
Query: 90 LTGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+GGEPL++ D+ + + ++ G+ + T+G + ++ + LK G
Sbjct: 70 -SGGEPLMRDDLEVLVAEAHRLGYYTNLLTSG----------VGLTAERAQALKAAGLDH 118
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
++L F +++ Q + G + + ++
Sbjct: 119 IQLSFQDSTRELNDFLSHTRTFDLKQRVAGIIKDNGWPMVMNCVIHRLN 167
>gi|255655113|ref|ZP_05400522.1| glycerol dehydratase activator [Clostridium difficile QCD-23m63]
gi|296451101|ref|ZP_06892843.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP08]
gi|296880546|ref|ZP_06904508.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP07]
gi|296260108|gb|EFH06961.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP08]
gi|296428500|gb|EFH14385.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
NAP07]
Length = 300
Score = 41.4 bits (96), Expect = 0.073, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 8/141 (5%)
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
+V+++ +E+ +I + +GGEP LQ+D L+ +G IA+ET G
Sbjct: 103 EEMSVEEIVKEVEKDFIFFFESNGGITFSGGEPTLQIDFLRELVDIFYNKGINIAIETCG 162
Query: 121 TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI----GFDFERFSLQP- 175
+ + D D+K K N + I + P
Sbjct: 163 YFDWNKVNDVFDKIDHIFVDIKSMDDNIHKEYTGVSNKIILDNICRLSKLNKSMVIRVPI 222
Query: 176 MDGP-FLEENTNLAISYCFQN 195
+ G EEN + QN
Sbjct: 223 IYGVNDSEENIRNTALFVKQN 243
>gi|304558306|gb|ADM40970.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
FL6-60]
Length = 291
Score = 41.4 bits (96), Expect = 0.074, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 49/159 (30%), Gaps = 30/159 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L G G R VF F GC + R +C C
Sbjct: 23 IFNVQRYSLNDGHGI---RSVVF--FKGCPHRCPWCANPESISPAPQTVRREQRCLHCTP 77
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G + QL + + + G L+GGE LLQ
Sbjct: 78 CLNDADECPSGAMERIGRTVTLAQLEAEVMKDVVFFRSSGGGVTLSGGEVLLQAAFATRF 137
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
R G A+ET G + + + + DLK
Sbjct: 138 LTRLRRLGVHCALETAGDGPASRLLPLASLCDEVLFDLK 176
>gi|89895755|ref|YP_519242.1| putative pyruvate-formate lyase-activating enzyme
[Desulfitobacterium hafniense Y51]
gi|89335203|dbj|BAE84798.1| putative pyruvate-formate lyase-activating enzyme
[Desulfitobacterium hafniense Y51]
Length = 288
Score = 41.4 bits (96), Expect = 0.074, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+V++ ++I E G ++GGEP+ Q D + L + + G+ +A++T+G
Sbjct: 95 SVEECMEVIRHDKKYYENSGGGVTISGGEPMSQFDFCMALAKTCKEEGYHVALDTSGYAP 154
Query: 124 PPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSL-QPMDGP 179
Q +D + DLK + L F +V + + RF + P+
Sbjct: 155 TKQFLDILPYIDLFLYDLKHMDSERCHSLVGAFNEVILDNAVMLSKVGARFQIRIPIIPH 214
Query: 180 --FLEENTNLAISYCFQ 194
E+N A ++C
Sbjct: 215 LNDSEQNIRAAAAFCLD 231
>gi|302330040|gb|ADL20234.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Corynebacterium pseudotuberculosis 1002]
gi|308275721|gb|ADO25620.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Corynebacterium pseudotuberculosis I19]
Length = 228
Score = 41.4 bits (96), Expect = 0.074, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 36/188 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
A F GC L +C +C +Q G +++ + L+ +
Sbjct: 36 VAAAF--TQGCPL-----------RCVYCHN--SQLQAFTPGAHSLAEFLSLL----SSR 76
Query: 82 EKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE---------PPQGIDWI 131
V++GGEP ++ I A++ GF + + T G P DW+
Sbjct: 77 HGLIDAAVISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 136
Query: 132 CVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
+ KA + + V+ + + E+ I +G +E+N +
Sbjct: 137 GLDIKALPRHMREVTGCSPRVATAVWDSLRILQESEIDVTLRTTL---WEGSVIEQNIDE 193
Query: 188 AISYCFQN 195
S
Sbjct: 194 LRSVVKNR 201
>gi|300857746|ref|YP_003782729.1| hypothetical protein cpfrc_00329 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685200|gb|ADK28122.1| hypothetical protein cpfrc_00329 [Corynebacterium
pseudotuberculosis FRC41]
Length = 236
Score = 41.4 bits (96), Expect = 0.074, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 36/188 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
A F GC L +C +C +Q G +++ + L+ +
Sbjct: 44 VAAAF--TQGCPL-----------RCVYCHN--SQLQAFTPGAHSLAEFLSLL----SSR 84
Query: 82 EKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE---------PPQGIDWI 131
V++GGEP ++ I A++ GF + + T G P DW+
Sbjct: 85 HGLIDAAVISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 144
Query: 132 CVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
+ KA + + V+ + + E+ I +G +E+N +
Sbjct: 145 GLDIKALPRHMREVTGCSPRVATAVWDSLRILQESEIDVTLRTTL---WEGSVIEQNIDE 201
Query: 188 AISYCFQN 195
S
Sbjct: 202 LRSVVKNR 209
>gi|18313817|ref|NP_560484.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
aerophilum str. IM2]
gi|18161379|gb|AAL64666.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
aerophilum str. IM2]
Length = 254
Score = 41.4 bits (96), Expect = 0.074, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G + T FV G ++A + E + + +
Sbjct: 46 GCNLRCGMCWAWRN-------TSFVLT---AGAWMAPHEVAARLREIAKSKGFQQ--VRI 93
Query: 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+GGEPL+ + L + VETNG
Sbjct: 94 SGGEPLIAPEHLLEVIDLLSEYTFVVETNG 123
>gi|114326910|ref|YP_744067.1| radical SAM superfamily protein [Granulibacter bethesdensis
CGDNIH1]
gi|114315084|gb|ABI61144.1| radical SAM superfamily protein [Granulibacter bethesdensis
CGDNIH1]
Length = 331
Score = 41.4 bits (96), Expect = 0.075, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 44/140 (31%), Gaps = 21/140 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL G +C T + +L I+ T
Sbjct: 41 CNLACG-----------YC-----NEYDTFSPPVPLPELLARIDHLAKLRTAS---ITFT 81
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEPLL I+A + G + + TNG ID + + G + I E
Sbjct: 82 GGEPLLHPQLDEAIRAARRHGMIVTMITNGFRLTKAWIDRLNAAGLQGMQISIDNL-EPD 140
Query: 151 LVFPQVNVSPENYIGFDFER 170
V + S E +G E
Sbjct: 141 EVSMKSLHSVEKKLGLLAEH 160
>gi|241663687|ref|YP_002982047.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
pickettii 12D]
gi|240865714|gb|ACS63375.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12D]
Length = 400
Score = 41.4 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC D+ +Q D+ + G +
Sbjct: 26 PLWLLAELTYRCPLHCAFCSNPVDYTRHD----QELTTEQWCDVFTQARALGAVQ---LG 78
Query: 90 LTGGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
L+GGEPLL+ D+ + A + GF + + T+G
Sbjct: 79 LSGGEPLLRKDLETLVAHAHGLGFYVNLVTSG 110
>gi|51246878|ref|YP_066762.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila
LSv54]
gi|50877915|emb|CAG37755.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea
psychrophila LSv54]
Length = 340
Score = 41.4 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 10/146 (6%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G V ++ D +EE I + G L+GGEP Q + + L++ R + AVET
Sbjct: 142 GEEMTVKKVVDRVEEDAIFYARSGGGMTLSGGEPFAQAEFALALLREARHRRIKTAVETC 201
Query: 120 GTIEPPQGIDW------ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
G + I K+ + K K + P N+ + +
Sbjct: 202 GAAKWENIEACVPYLNTIMFDVKSLNEEKHKEFTGVSNKLPLENLRKIREMAPSVPIRAR 261
Query: 174 QPMDGPFL--EENTNLAISYCFQNPK 197
P+ F EE+ + + P
Sbjct: 262 TPIIPGFNDTEEDIKAIVEFLESLPG 287
>gi|299132405|ref|ZP_07025600.1| Radical SAM domain protein [Afipia sp. 1NLS2]
gi|298592542|gb|EFI52742.1| Radical SAM domain protein [Afipia sp. 1NLS2]
Length = 513
Score = 41.4 bits (96), Expect = 0.076, Method: Composition-based stats.
Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 21/189 (11%)
Query: 31 GCNLWSGREQDRLSAQCRF-------CDT--DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
GC G D C CD G ++++ ++++ T
Sbjct: 102 GCPHDCGLCPDHEQHACLGIIEVNSACDMNCPLCFADAAPGFSLTMEEVEQMLDDYVRT- 160
Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAVETNGTIEPPQGIDWI---CVSPK 136
E + +GGEP + + ++A R + + TNG V P
Sbjct: 161 EGQPEVVQFSGGEPTVHPRIIDFVRAAYARDIRFVMLNTNGKRIARDDRFLAELETVRPS 220
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNL-----AIS 190
+ + + + ++ E D + L P +E N +
Sbjct: 221 FYFQFDGFERETYRAIRGEPDILEEKLRALDRLAQIGLDVTIVPAIERGINEHEIGRIVD 280
Query: 191 YCFQNPKWR 199
+ ++P R
Sbjct: 281 FAIEHPAIR 289
>gi|160902510|ref|YP_001568091.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
gi|160360154|gb|ABX31768.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
Length = 468
Score = 41.4 bits (96), Expect = 0.078, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 27/148 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL R + I K + + +
Sbjct: 135 GCNLNCKYCYRREDIR------KSTFIDSEKLKVMVEKLNKETL-----------SMVEI 177
Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNGTI---------EPPQGIDWICVSPKAGCD 140
TGGEP L +++ + +RG + V TNG EP VS +
Sbjct: 178 TGGEPTLHPHFTEILKYILERGITVGVLTNGVKLPENSTEELEPYADKIIWGVSLDSYDP 237
Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDF 168
+ K + + + + +F
Sbjct: 238 EYHDKFRGKKGAWESTVKNIKKLVNHNF 265
>gi|328951851|ref|YP_004369185.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
gi|328452175|gb|AEB08004.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
Length = 337
Score = 41.4 bits (96), Expect = 0.079, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
F + CNL C F D+ G G +D++ ++ E G +
Sbjct: 10 FIITNQCNLNC--------LHC-FADS------GVAGYEMTMDEIRKVLRELRELGVFQ- 53
Query: 86 RYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
+ TGGEP + D +++ F + +ETNG
Sbjct: 54 --VLFTGGEPFCRNDFFEVMEDAEAMDFAMVIETNG 87
>gi|303257844|ref|ZP_07343854.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderiales bacterium 1_1_47]
gi|331000298|ref|ZP_08323981.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Parasutterella excrementihominis YIT 11859]
gi|302859447|gb|EFL82528.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderiales bacterium 1_1_47]
gi|329572330|gb|EGG53988.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Parasutterella excrementihominis YIT 11859]
Length = 255
Score = 41.4 bits (96), Expect = 0.079, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 23/123 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF GC +C +C D + +G Y + I+
Sbjct: 39 AVVFI--KGCP-----------WKCVYCQNEDLQSREMNEGDGY---VSWEYIDHFLDRR 82
Query: 82 EKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSP 135
+ V +GGEP + +P I+ + ++G++I + T G +DW+ +
Sbjct: 83 KGLIDGVVFSGGEPCVDPALPDAIKRVKEKGYKIGLHTGGMYPRRLRAILPYLDWVGLDI 142
Query: 136 KAG 138
KA
Sbjct: 143 KAP 145
>gi|322807498|emb|CBZ05073.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
H04402 065]
Length = 300
Score = 41.4 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKVI 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+ G
Sbjct: 71 TMKNNIPMVDEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKFRGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D +N + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIIKDVNDNNKNIDETIKFI 241
>gi|322369540|ref|ZP_08044105.1| molybdenum cofactor biosynthesis protein A [Haladaptatus
paucihalophilus DX253]
gi|320551272|gb|EFW92921.1| molybdenum cofactor biosynthesis protein A [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 41.4 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + D++ + E + TGGEP+L+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPMEPGDDEMGTDDVVRFLEVAREFDVGKVKFTGGEPMLRE 78
Query: 100 DVPLIQALNKRGFEIAVETNGTI 122
D+ I G E ++ TNGT
Sbjct: 79 DLEEIIRRTPDGMETSLTTNGTF 101
>gi|327400584|ref|YP_004341423.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
SNP6]
gi|327316092|gb|AEA46708.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
Length = 534
Score = 41.4 bits (96), Expect = 0.080, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G +R C +C + G +V+Q+A ++
Sbjct: 97 GCPFSCGLCPLHKSHTALLNIVLTNRCDLACWYC-FFYAKRAGYVYEP-SVEQIARMVRT 154
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
LTGGEP L+ D+ +I+A+ G I + TNG
Sbjct: 155 ARNMKPVGCNAVQLTGGEPTLRDDLIDIIKAIKAEGIDHIQLNTNG 200
>gi|332083967|gb|EGI89176.1| glycyl-radical enzyme activating family protein [Shigella boydii
5216-82]
Length = 291
Score = 41.4 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 43/229 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSG-GVTLSGGEVLMQAEFATRF 137
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLK-IKGGQELKLVFPQVNVSPEN 162
R G A+ET G + + + + DLK + Q +V + EN
Sbjct: 138 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQAWDVVKMNLPRVLEN 197
Query: 163 YIGFDFE------RFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
E R L P EN A+ R Q H
Sbjct: 198 LRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIP-LNIR---QIH 241
>gi|303243865|ref|ZP_07330205.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
gi|302485801|gb|EFL48725.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
Length = 212
Score = 41.4 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 31/153 (20%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVP 102
+C +C ++ T +++ + I+ + V++GGEP LQ
Sbjct: 1 MKCGYCHNYEHMLENTH--EMTPEEVFNSIDLMFAEA------IVISGGEPTLQPKALKE 52
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
L ++GF + ++TNGT + K +
Sbjct: 53 LCIIAKRKGFPVKLDTNGTNIEIIKDLIDNKLIDYIALDVKCAFDKYKKITNY------- 105
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
DG +++N I+YC +N
Sbjct: 106 --------------DGEKIKKNMLELINYCKKN 124
>gi|222480270|ref|YP_002566507.1| molybdenum cofactor biosynthesis protein A [Halorubrum
lacusprofundi ATCC 49239]
gi|222453172|gb|ACM57437.1| molybdenum cofactor biosynthesis protein A [Halorubrum
lacusprofundi ATCC 49239]
Length = 334
Score = 41.4 bits (96), Expect = 0.082, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + D++ + TGGEP+L+
Sbjct: 22 DRCNFDCVYCHNEGLGDTRGPMEPSDDEMTADDVVRFLEVVEGYGVDSVKFTGGEPMLRQ 81
Query: 100 DVPLIQALNKRGFEIAVETNGTI 122
D+ I E+++ TNGT
Sbjct: 82 DLEEIVERTPDSMEVSLTTNGTF 104
>gi|291280013|ref|YP_003496848.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Deferribacter desulfuricans SSM1]
gi|290754715|dbj|BAI81092.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Deferribacter desulfuricans SSM1]
Length = 227
Score = 41.4 bits (96), Expect = 0.083, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 22/100 (22%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF SGCNL CRFC + ++ + D LI +
Sbjct: 20 AVVFI--SGCNLL-----------CRFCYNRELVLKKLVKDK-TEDFFEYLILNKI---- 61
Query: 83 KEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGT 121
+Y +TGGEPL + + L K G I ++TNG
Sbjct: 62 ---KYVAITGGEPLFHPHILDFFEKLKKLGVSIKLDTNGF 98
>gi|187929569|ref|YP_001900056.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
pickettii 12J]
gi|309781652|ref|ZP_07676386.1| coenzyme PQQ biosynthesis protein E [Ralstonia sp. 5_7_47FAA]
gi|187726459|gb|ACD27624.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12J]
gi|308919627|gb|EFP65290.1| coenzyme PQQ biosynthesis protein E [Ralstonia sp. 5_7_47FAA]
Length = 400
Score = 41.4 bits (96), Expect = 0.083, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC D+ + +Q D+ + G +
Sbjct: 26 PLWLLAELTYRCPLHCAFCSNPVDYTRHD----QELSTEQWCDVFTQARALGAVQ---LG 78
Query: 90 LTGGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
L+GGEPLL+ D+ + A + GF + + T+G
Sbjct: 79 LSGGEPLLRKDLETLVAHAHGLGFYVNLVTSG 110
>gi|304395876|ref|ZP_07377758.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. aB]
gi|304356245|gb|EFM20610.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. aB]
Length = 380
Score = 41.4 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+P I+A GF + T+G G+D I +S +A +
Sbjct: 66 GGEPLVRKDLPELIKAARDLGFYTNLITSGIGLTEKKLDAFSEAGLDHIQISFQASDETL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C +
Sbjct: 126 NAALAGSKKAF-QQKLEMAKAVKAHGYPMVLNFVLHRHNIDQIDKIIDLCIE 176
>gi|167570605|ref|ZP_02363479.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia oklahomensis C6786]
Length = 239
Score = 41.4 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC +C +C + + + + +
Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQARSQ-----PAEIEWNALLA 65
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF++ + + GT +DW
Sbjct: 66 FLARRIGLIDAVVFSGGEPSIDPALAASIDDVKRLGFKVGMHSAGTHPRRLAHLLPSLDW 125
Query: 131 ICVSPKAGCDLKIK 144
I + KA D +
Sbjct: 126 IGLDVKAPFDDYAR 139
>gi|167563434|ref|ZP_02356350.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia oklahomensis EO147]
Length = 239
Score = 41.4 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC +C +C + + + + +
Sbjct: 26 GQFA--AVVFV--QGCP-----------WRCGYCHNPHLQARSQ-----PAEIEWNALLA 65
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF++ + + GT +DW
Sbjct: 66 FLARRIGLIDAVVFSGGEPSIDPALAASIDDVKRLGFKVGMHSAGTHPRRLAHLLPSLDW 125
Query: 131 ICVSPKAGCDLKIK 144
I + KA D +
Sbjct: 126 IGLDVKAPFDDYAR 139
>gi|239815326|ref|YP_002944236.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus
S110]
gi|239801903|gb|ACS18970.1| molybdenum cofactor biosynthesis protein A [Variovorax paradoxus
S110]
Length = 383
Score = 41.4 bits (96), Expect = 0.086, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + + + R LTGGEPLL+
Sbjct: 51 DRCNFRCSYCMPKDVFDKDYQYLPHSALLSFEEMTRLARLFAAHGVRKIRLTGGEPLLRK 110
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + A + + TNG+ G+ + VS + D +
Sbjct: 111 NIEALIAQLSEIRTPGGEPLALTLTTNGSLLQRKAAALAAAGLQRVTVSLDSLDDAVFRH 170
Query: 146 GQELKLVFPQV 156
++ V
Sbjct: 171 MNDVDFPVADV 181
>gi|317048015|ref|YP_004115663.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. At-9b]
gi|316949632|gb|ADU69107.1| coenzyme PQQ biosynthesis protein E [Pantoea sp. At-9b]
Length = 380
Score = 41.4 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELTTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P I+A GF + T+G G+D I +S +A +
Sbjct: 66 GGEPLTRKDLPELIKAARDLGFYTNLITSGIGLTQNKLDAFADAGLDHIQISFQASDETL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C +
Sbjct: 126 NAALAGSKKAF-QQKLEMAKAVKAHGYPMVLNFVLHRHNIDQIDKIIDLCIE 176
>gi|307302848|ref|ZP_07582603.1| Radical SAM domain protein [Shewanella baltica BA175]
gi|306913208|gb|EFN43630.1| Radical SAM domain protein [Shewanella baltica BA175]
Length = 298
Score = 41.4 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 14/169 (8%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + S +C CDT + + +++ ++G
Sbjct: 72 NLNNKPRIRWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQRHF-INGITVSG 130
Query: 93 GE-----PLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
GE P + I+A ++TNG++ + A DLK
Sbjct: 131 GEASLQLPFILALFKGIKATESLSHLTCMLDTNGSLSLTGWHKLLPFLDGAMVDLKAWQQ 190
Query: 147 QELKLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ + + N + R P + +E LA
Sbjct: 191 DTHRYITGRDNHAVFKSIQLLAQQQKLYEVRLLHIPSITDYEQEIEALA 239
>gi|297380130|gb|ADI35017.1| Hypothetical protein HPV225_0953 [Helicobacter pylori v225d]
Length = 208
Score = 41.4 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 17/160 (10%)
Query: 50 CDTDFVGI---QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
CD+ + + T + L + +E + +LTGGEP L + P++ +
Sbjct: 9 CDSLYAVHPKFKETWDYYNDPKSLIERLENLAP--NYKHFDFILTGGEPSLYFNNPILIS 66
Query: 107 LNKRGFE----IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPEN 162
+ + + + VE+NG+I + L +E K + + + N
Sbjct: 67 VLEHFYRKKIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEERKRINLKALQNILN 126
Query: 163 YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
+F L + ++ + Q LS+
Sbjct: 127 NAKSAHFKFVL---ESKNAAQSIAEIQNLLKQ-----LSL 158
>gi|225023347|ref|ZP_03712539.1| hypothetical protein EIKCOROL_00205 [Eikenella corrodens ATCC
23834]
gi|224943825|gb|EEG25034.1| hypothetical protein EIKCOROL_00205 [Eikenella corrodens ATCC
23834]
Length = 271
Score = 41.4 bits (96), Expect = 0.087, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 21/113 (18%)
Query: 13 LQGEGGHAGRVAVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQL 70
+ G G F F GC +C +C + ++ + V QL
Sbjct: 39 VDGPGLR------FVLFMQGC-----------LMRCLYCHNRDTWDRHSEKELHFTVPQL 81
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
+ G TGGEPLLQ A + ++TNG
Sbjct: 82 MQQVLSYKHYFRATGGGVTATGGEPLLQYQFIRDWFVACREHDIHTCLDTNGY 134
>gi|189500137|ref|YP_001959607.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Chlorobium phaeobacteroides BS1]
gi|189495578|gb|ACE04126.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Chlorobium phaeobacteroides BS1]
Length = 255
Score = 41.0 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GR++ GCN +C +C + + + + + +
Sbjct: 39 GRISAVIYTMGCNF-----------RCVYCHNPELVVSERLAETVPL--VNEELFAWLSL 85
Query: 81 GEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V+TGGEP + I+ + ++ ++TNGT
Sbjct: 86 NRALLDAVVITGGEPTMHAVLPEFIRRIKTLELDVKIDTNGTNP 129
>gi|237750926|ref|ZP_04581406.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Helicobacter bilis ATCC 43879]
gi|229373371|gb|EEO23762.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Helicobacter bilis ATCC 43879]
Length = 193
Score = 41.0 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+ GC C+ C G +++ + + I+EQ +
Sbjct: 17 PSFVIWTQGCP-----------IHCKGCWNTHTW-DSKGGFTMDIESIFNNIKEQKDSKT 64
Query: 83 KEGRYCVLTGGEPLLQVDVPLI 104
+ + GGEP Q D
Sbjct: 65 LPIQAVTILGGEPFYQYDELYK 86
>gi|168204695|ref|ZP_02630700.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens E str. JGS1987]
gi|170663810|gb|EDT16493.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens E str. JGS1987]
Length = 273
Score = 41.0 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 68/248 (27%), Gaps = 55/248 (22%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------- 41
I +I F + G G +F F GCN +
Sbjct: 4 INKIIPFSCVDGPGNRM---VIF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGAL 58
Query: 42 --------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+C CD + + + +L+++ R ++GG
Sbjct: 59 SISDGKVIWDEEECISCDKCIKLCENMSSPKLKEYSVEELVKK-IEKDSFFIRGITVSGG 117
Query: 94 EPLLQ--VDVPLIQALNKRGFEIAVETNGTIE------PPQGIDWICVSPKAGCDLKIKG 145
E L + L + + K G V+TNG + + V +
Sbjct: 118 ECTLNSEFLIKLFREVKKLGLTCFVDTNGNTKLDDELINLTDKFMLDVKSIDEKENIWLT 177
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTH 205
KLV + E ++ G E+ + +++L
Sbjct: 178 KSSNKLVLENLKRILELDKMYEVRTVI---AKGLDSEKTVDEVSKIIGDKCRYKLI---- 230
Query: 206 KF--IGIR 211
K+ G+R
Sbjct: 231 KYRPFGVR 238
>gi|34557098|ref|NP_906913.1| putative radical-activating enzyme [Wolinella succinogenes DSM
1740]
gi|34482813|emb|CAE09813.1| PUTATIVE RADICAL-ACTIVATING ENZYME [Wolinella succinogenes]
Length = 223
Score = 41.0 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
FSGCNL C +C + + G+ +++ L + + E
Sbjct: 27 FSGCNL-----------ACSYC---YNPEFLKESGKIDLEGLLSFLRSRVGLLEG----V 68
Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
V +GGE L +P ++ + GF+I ++TNGT
Sbjct: 69 VFSGGEATLFAGLPLWMEEVRSLGFKIKLDTNGTNP 104
>gi|307265997|ref|ZP_07547544.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918959|gb|EFN49186.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 333
Score = 41.0 bits (95), Expect = 0.092, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 18/125 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +FC + Q +G + QL + Q
Sbjct: 87 GCNLKC-----------KFCQNWEIAHQKWEGDYISPQQLIAAAKRQRDN-----IGIAF 130
Query: 91 TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EPL+ + + K G + + TNG I + D+K
Sbjct: 131 TYNEPLIWYEYVHDGLIEAKKEGLKTVLVTNGYINLEPLKKILPYVDAMNIDVKAFIEDF 190
Query: 149 LKLVF 153
K +
Sbjct: 191 YKKIV 195
>gi|304390340|ref|ZP_07372293.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304326096|gb|EFL93341.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 266
Score = 41.0 bits (95), Expect = 0.092, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 21/115 (18%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQ 69
F T+ G +VF GC G Q+ I Y
Sbjct: 25 FSTVDWPGKL--VASVF--LQGCPWNCGYCQNV------------AIIDPRAPAGYQEAD 68
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
L +L+ + + V +GGEP +P Q GF + + T G
Sbjct: 69 LWELLGRRRGLLDG----VVFSGGEPTRQAALMPAAQRARDLGFLLGLHTGGAYP 119
>gi|219852013|ref|YP_002466445.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
gi|219546272|gb|ACL16722.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
Length = 377
Score = 41.0 bits (95), Expect = 0.092, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLI 104
+CR+CD+ + + D+ +I+E +GGEP ++ D+ L
Sbjct: 39 RCRYCDS----WKNNGESEPDTDEWKKIIDELV---NLGIVTLTFSGGEPFIRKDLFELA 91
Query: 105 QALNKRGFEIAVETN 119
RG V TN
Sbjct: 92 SYAKSRGLITMVVTN 106
>gi|222109327|ref|YP_002551591.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidovorax ebreus TPSY]
gi|221728771|gb|ACM31591.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidovorax ebreus TPSY]
Length = 256
Score = 41.0 bits (95), Expect = 0.093, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR+A VFC GC G +C G +E+
Sbjct: 28 GRLAAVVFC--QGCPWRCG-----------YCHNA-----GLLDAAAPAPHRWSEVEQLL 69
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
T V +GGEP LQ +P + + GF + T G
Sbjct: 70 HTRRGLLDGVVFSGGEPTLQAALPDALARVRALGFATGLHTAGMYP 115
>gi|325273058|ref|ZP_08139367.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas sp.
TJI-51]
gi|324101809|gb|EGB99346.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas sp.
TJI-51]
Length = 370
Score = 41.0 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +G N +Q ++ E G + + +
Sbjct: 4 PLWLLAELTYRCPLQCPYCSNPLDF--AAQGQELNTEQWFKVMAEARQMGAAQIGF---S 58
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPL+ Q LI + G+ + T+G G+D I +S +A +
Sbjct: 59 GGEPLVRQDLAELIGEARRLGYYTNLITSGIGLNEARIAEFKEAGLDHIQISFQASDEQV 118
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C
Sbjct: 119 NNLLAGSKKAFAQ-KLEMARAVKAHGYPMVLNFVTHRHNIDKIDRIIELCIA 169
>gi|296242661|ref|YP_003650148.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermosphaera aggregans DSM 11486]
gi|296095245|gb|ADG91196.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermosphaera aggregans DSM 11486]
Length = 253
Score = 41.0 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 26/184 (14%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCNL C FC + R+ + +++E + Y
Sbjct: 28 FCGCNLK-----------CPFCHNWRLAENDPGVCRW--ITIDEIVESLSTSLMF-IDYL 73
Query: 89 VLTGGEPLLQV---DVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVSPKAG 138
+TGGEPLLQ +A N G + ++ TN T++ P D + K
Sbjct: 74 HVTGGEPLLQWASLFKLFQEAGNSLGVKRSLNTNMTLKEPFKRLLERVLVDHVATDLKLP 133
Query: 139 CDLKIKGGQE-LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
E ++ + + +D P+ E + +++ +
Sbjct: 134 YRELYGLPAETADKLWANYLENLKLLSDYDIPLELRIPVSRLLKPEALDESLNIVGKYLH 193
Query: 198 WRLS 201
RLS
Sbjct: 194 -RLS 196
>gi|152975978|ref|YP_001375495.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152024730|gb|ABS22500.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus cytotoxicus NVH 391-98]
Length = 150
Score = 41.0 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 25/108 (23%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G +++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNPQSW-NICNGTEMTAEEIIK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
I + +GG+P LQ + + + G + + T
Sbjct: 55 EIV------KNPLTDVTFSGGDPFLQAAEVKKVAKGVKDLGKNLWIYT 96
>gi|15896051|ref|NP_349400.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum
ATCC 824]
gi|15025836|gb|AAK80740.1|AE007777_4 MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum
ATCC 824]
gi|325510205|gb|ADZ21841.1| MoaA/NirJ family Fe-S oxidoreductase [Clostridium acetobutylicum EA
2018]
Length = 394
Score = 41.0 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
+ + +C+ C + G G T + ++ LI + + + + +
Sbjct: 37 PVVVFNCTKTCNLRCKHC---YAGSDGKTYKDELSTEEAYSLIADL---SDFKVPVIIFS 90
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPL++ D+ LI+ K + TNG
Sbjct: 91 GGEPLIRKDIFELIEFAKKNNIRSTLSTNG 120
>gi|110637727|ref|YP_677934.1| GTP cyclohydrolase subunit MoaA [Cytophaga hutchinsonii ATCC 33406]
gi|110280408|gb|ABG58594.1| GTP cyclohydrolase subunit MoaA [Cytophaga hutchinsonii ATCC 33406]
Length = 317
Score = 41.0 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ C +C T + V++ +I+ I + + LTGGEPLL ++P
Sbjct: 26 CNMACVYCVTPGAIHTPSAEKVLTVEEYLSIIKN--IHSQVGLKTIRLTGGEPLLFKELP 83
Query: 103 L-IQALNKRGFE-IAVETNGTIEPP-------QGIDWICVSPKAGCDLKIKG---GQELK 150
+ I+ + G I + TNG G+ I +S A + Q+L+
Sbjct: 84 VLIKGIKALGITDIKLTTNGLKLLSVLDALVEAGLTSINISLDALDPAVFRNITKNQDLR 143
Query: 151 LVFPQVNVSPENYIGFDFERFSL 173
V + + I L
Sbjct: 144 AVLDGIEAARHKGIAIKINTVVL 166
>gi|304408845|ref|ZP_07390466.1| Radical SAM domain protein [Shewanella baltica OS183]
gi|304352666|gb|EFM17063.1| Radical SAM domain protein [Shewanella baltica OS183]
Length = 286
Score = 41.0 bits (95), Expect = 0.095, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 14/169 (8%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + S +C CDT + + +++ ++G
Sbjct: 60 NLNNKPRIRWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQRHF-INGITVSG 118
Query: 93 GE-----PLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
GE P + I+A ++TNG++ + A DLK
Sbjct: 119 GEASLQLPFILALFKGIKATESLSHLTCMLDTNGSLSLTGWHKLLPFLDGAMVDLKAWQQ 178
Query: 147 QELKLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ + + N + R P + +E LA
Sbjct: 179 DTHRYITGRDNHAVFKSIQLLAQQQKLYEVRLLHIPSITDYEQEIEALA 227
>gi|227498886|ref|ZP_03929026.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904338|gb|EEH90256.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 277
Score = 41.0 bits (95), Expect = 0.095, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL C FC + G + R+ + + E
Sbjct: 70 FGCNL-----------ACPFCQNHEISQHGREATRFVLPPEKLAALAGKMHKETGSIGLA 118
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKI 143
T EPL+ ++ + + + + G + TNG++ P + D + ++ DLK
Sbjct: 119 FTYNEPLINIEYVLDTFRLIKETGLATVLVTNGSLAPARFHDLLPLTDAMNIDLKC 174
>gi|312128493|ref|YP_003993367.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor hydrothermalis 108]
gi|311778512|gb|ADQ07998.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor hydrothermalis 108]
Length = 231
Score = 41.0 bits (95), Expect = 0.096, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 21/98 (21%)
Query: 29 FSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
F GCN C FC ++D V +G+ + E +
Sbjct: 23 FGGCNFS-----------CPFCYNSDLVNFKGSFMD-------DSIFFEYLDKRKGIVDA 64
Query: 88 CVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L I+ + R + ++TNG+
Sbjct: 65 VCITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRP 102
>gi|160875513|ref|YP_001554829.1| radical SAM domain-containing protein [Shewanella baltica OS195]
gi|160861035|gb|ABX49569.1| Radical SAM domain protein [Shewanella baltica OS195]
Length = 298
Score = 41.0 bits (95), Expect = 0.096, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 48/169 (28%), Gaps = 14/169 (8%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + S +C CDT + + +++ ++G
Sbjct: 72 NLNNKPRISWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQRHF-INGITVSG 130
Query: 93 GE-----PLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
GE P + I+A ++TNG++ + A DLK
Sbjct: 131 GEASLQLPFIIALFKGIKASESLSHLTCMLDTNGSLSLTGWHKLLPFLDGAMVDLKAWQQ 190
Query: 147 QELKLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ + + N + R P + EE LA
Sbjct: 191 DTHRYITGRNNHAVFTSIQLLAQQQKLYEVRLLHIPSITDYEEEIEALA 239
>gi|330836810|ref|YP_004411451.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Spirochaeta coccoides DSM 17374]
gi|329748713|gb|AEC02069.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Spirochaeta coccoides DSM 17374]
Length = 188
Score = 41.0 bits (95), Expect = 0.096, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 30/108 (27%), Gaps = 24/108 (22%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF GC C C G G V + +
Sbjct: 31 VDGPGLRV---TVFA--QGCP-----------HACPGCHNPETWTSGV-GREMTVTDIYE 73
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVET 118
I + +GG+PL Q L G+E+A T
Sbjct: 74 RIHRNPLF-----TGVTFSGGDPLFQPSGFADLATLCKAGGYEVACYT 116
>gi|89899184|ref|YP_521655.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
[Rhodoferax ferrireducens T118]
gi|89343921|gb|ABD68124.1| Ribonucleoside-triphosphate reductase, anaerobic-like [Rhodoferax
ferrireducens T118]
Length = 238
Score = 41.0 bits (95), Expect = 0.096, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 26/126 (20%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
G++A VF GC G +C + + + +
Sbjct: 25 GKLAAVVFV--QGCPWRCG-----------YCHNPHL-----QPRTGSSLVSWSAVLALL 66
Query: 79 ITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWIC 132
V +GGEP + + ++A+ GF + + + G + +DW+
Sbjct: 67 KRRVGLIDAVVFSGGEPTMDPGLLDAMRAVRSLGFGVGLHSAGMYPRRLAEVLELVDWVG 126
Query: 133 VSPKAG 138
+ K+
Sbjct: 127 LDVKSS 132
>gi|11499897|ref|NP_071141.1| hypothetical protein AF2316 [Archaeoglobus fulgidus DSM 4304]
gi|2648203|gb|AAB88940.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 518
Score = 41.0 bits (95), Expect = 0.096, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G +R C +C + G ++Q+ +++ +
Sbjct: 85 CPFSCGLCNNHKSHTALLNIVLTNRCDLACWYC-FFYARRAGYVYEP-TIEQIREMVRKA 142
Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
LTGGEP L+ D+ +I+ + + G+ I + TNG
Sbjct: 143 KNMKPIGCNAVQLTGGEPTLRDDLIDIIRMIKEEGYDHIQLNTNG 187
>gi|193063928|ref|ZP_03045014.1| glycyl-radical enzyme activating protein family [Escherichia coli
E22]
gi|192929393|gb|EDV83001.1| glycyl-radical enzyme activating protein family [Escherichia coli
E22]
Length = 291
Score = 41.0 bits (95), Expect = 0.097, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 31/171 (18%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L GEG VF F GC + R A+C C
Sbjct: 24 IFNIQRYSLNDGEGIRT---VVF--FKGCPHLCPWCANPESISGKIQTVRREAKCLHCAK 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQ 105
D G G ++D L + + I G L+GGE L+Q +
Sbjct: 79 CLRDADECPSGAFERIGRDISLDALEREVMKDDIFFRTSG-GVTLSGGEVLMQAEFATRF 137
Query: 106 ALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
R G A+ET G + + + + DLKI + + V
Sbjct: 138 LQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 188
>gi|320094912|ref|ZP_08026644.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Actinomyces sp. oral taxon 178 str. F0338]
gi|319978156|gb|EFW09767.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Actinomyces sp. oral taxon 178 str. F0338]
Length = 234
Score = 41.0 bits (95), Expect = 0.098, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 19/103 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
++F GC C +C + R D +E
Sbjct: 22 VASLF--LQGCP-----------WACPYCQNAAI-----IDPRVPGVVAWDAVERLLARR 63
Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V +GGE Q+ P ++ + + GF + + T G
Sbjct: 64 RGLLDGVVFSGGEATRQIALAPAMRRVRELGFAVGLHTAGPYP 106
>gi|125974200|ref|YP_001038110.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
gi|125714425|gb|ABN52917.1| Radical SAM [Clostridium thermocellum ATCC 27405]
Length = 491
Score = 41.0 bits (95), Expect = 0.098, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 17/163 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVD 100
+ +C+ C G G N + I +TGG+P
Sbjct: 145 QCDLRCKHC-------YGEAGAMRNTQLTEEQIYSILDKLSDGCNSVSITGGDPMCHPKI 197
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC--------VSPKAGCDLKIKGGQELKLV 152
+I+ RGFE + TNG +W+ +S + +K
Sbjct: 198 KEIIKYSIARGFETTLITNGMRLNQNWANWLSEVGIKRVKLSLDGPTKEIHDELRGVKGA 257
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
F +V ++ Y+ FS+ + E N+ ++N
Sbjct: 258 FEKVILAM-GYLKNAKVSFSIGTVITKKNLEYINIIADIAYEN 299
>gi|319945690|ref|ZP_08019941.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
ATCC 700641]
gi|319748050|gb|EFW00293.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
ATCC 700641]
Length = 258
Score = 41.0 bits (95), Expect = 0.099, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 8 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRANPEKM 51
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
+ G V ++ D + + E+ G L+GGE Q + +++A
Sbjct: 52 LDAVTKKETITGEEKTVTEIIDDVLKDVDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+ G A+ET +E + +D I DLK + K V N I + F
Sbjct: 112 EVGLHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNTLKHKKVVGVNNHLIIKNIHYAF 171
Query: 169 ER 170
+
Sbjct: 172 AQ 173
>gi|168217217|ref|ZP_02642842.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens NCTC 8239]
gi|182380702|gb|EDT78181.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens NCTC 8239]
Length = 273
Score = 41.0 bits (95), Expect = 0.099, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 55/238 (23%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------- 41
I +I F + G G +F F GCN +
Sbjct: 4 INKIIPFSCVDGPGNRM---VIF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGAL 58
Query: 42 --------RLSAQCRFCD--TDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGRYCVL 90
+C CD + + Y+V++L IE+ R +
Sbjct: 59 SISDGKVIWDEEECISCDKCIKLCEHMSSPKTKEYSVEELVKKIEK----DSFFIRGITV 114
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE------PPQGIDWICVSPKAGCDLK 142
+GGE L + L + + K G V+TNG + + V +
Sbjct: 115 SGGECTLNSEFLIKLFREVKKLGLTCFVDTNGNTKLDDELINLTDKFMLDVKSIDEKENI 174
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200
KLV + E ++ G E+ + +++L
Sbjct: 175 WLTKSSNKLVLENLKRILELDKMYEVRTVI---AKGLNSEKTVDEVSKIIGDKCRYKL 229
>gi|254468647|ref|ZP_05082053.1| coenzyme PQQ biosynthesis protein E [beta proteobacterium KB13]
gi|207087457|gb|EDZ64740.1| coenzyme PQQ biosynthesis protein E [beta proteobacterium KB13]
Length = 394
Score = 41.0 bits (95), Expect = 0.100, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC TD+ N D+ I+ +
Sbjct: 17 PLWLLAEITYRCPLHCAFCYNPTDYADH---TKNELNTDEW---IKVLGDARKMGALQLG 70
Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
++GGEPLL+ D+ ++ N+ G+ + T+G + ++ K K G
Sbjct: 71 ISGGEPLLRDDIEDIVTEANQLGYYSNLITSG----------VGLTEKRIDAFKAGGLDH 120
Query: 149 LKLVFPQVNVSPENYIGFDFERFSL-QPMDGPFLEENTNLAISYCFQNPK 197
++L + N++ D + F L Q + + + ++
Sbjct: 121 IQLSMHDITEEISNFV-TDTKTFKLKQKVAAMIKDRGYPMVLNVVIHRYN 169
>gi|116754452|ref|YP_843570.1| molybdenum cofactor biosynthesis protein A [Methanosaeta
thermophila PT]
gi|116665903|gb|ABK14930.1| GTP cyclohydrolase subunit MoaA [Methanosaeta thermophila PT]
Length = 298
Score = 41.0 bits (95), Expect = 0.100, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + +C +C + G V+ + R +TGGEPL++ D+
Sbjct: 21 RCNLRCIYCHHEGEVTGGEISREMAVNVVNA-------ASRLGIRSVKITGGEPLMRSDL 73
Query: 102 PLIQALNKR---GFEIAVETNGTI 122
+ A K G EI++ TNG
Sbjct: 74 EEMIAGFKEVAPGVEISITTNGVY 97
>gi|167746402|ref|ZP_02418529.1| hypothetical protein ANACAC_01111 [Anaerostipes caccae DSM 14662]
gi|167654395|gb|EDR98524.1| hypothetical protein ANACAC_01111 [Anaerostipes caccae DSM 14662]
Length = 267
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 44/175 (25%), Gaps = 18/175 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL C FC + ++ L + +
Sbjct: 60 FGCNL-----------HCPFCQNHDISMKNADEAETVFLAPEKLALKASELRARGNIGVA 108
Query: 90 LTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL + + + + G + + TNG + DLK
Sbjct: 109 YTYNEPLTGYEYVRDAAKIVKQYGMKNVLVTNGAFSEAVEESLLPYIDAMNVDLKGIRED 168
Query: 148 ELKLVFPQVNVSPENYIG-FDFERFSL----QPMDGPFLEENTNLAISYCFQNPK 197
+ + + D L P + EE +A NP
Sbjct: 169 YYRKLGGDLGTVQNFIKKAADRCHVELAALIVPGENDSREEMEEMAAWVASVNPD 223
>gi|302870990|ref|YP_003839626.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor obsidiansis OB47]
gi|302573849|gb|ADL41640.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor obsidiansis OB47]
Length = 231
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCN C FC + G + D + E +
Sbjct: 23 FGGCNFS-----------CPFC---YNSQLVNFKGEFMDDNIFF---EYLDKRKGIVDAV 65
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L I+ + R + ++TNG+
Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRP 102
>gi|291617410|ref|YP_003520152.1| PqqE [Pantoea ananatis LMG 20103]
gi|291152440|gb|ADD77024.1| PqqE [Pantoea ananatis LMG 20103]
Length = 380
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + +Q D+ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELSTEQWIDVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P LI+A GF + T+G G+D I +S +A +
Sbjct: 66 GGEPLTRKDLPDLIKAARDLGFYTNLITSGIGLTEKKLEAFSDAGLDHIQISFQASDETL 125
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C +
Sbjct: 126 NAALAGSKKAF-QQKLEMARAVKAHGYPMVLNFVLHRHNIDQIDKIIDLCIE 176
>gi|168209976|ref|ZP_02635601.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens B str. ATCC 3626]
gi|170711934|gb|EDT24116.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens B str. ATCC 3626]
Length = 273
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 40/161 (24%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------- 41
I +I F + G G +F F GCN +
Sbjct: 4 INKIIPFSCVDGPGNRM---VIF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGAL 58
Query: 42 --------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+C CD + + + +L+++ R ++GG
Sbjct: 59 SISDGKVIWDEEECISCDKCIKLCEHMSSPKLKEYSVEELVKK-IEKDSFFIRGITVSGG 117
Query: 94 EPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
E L + L + + K G V+TNG + + +
Sbjct: 118 ECTLNSEFLIKLFREVKKLGLTCFVDTNGNTKLDDELINLT 158
>gi|152991853|ref|YP_001357574.1| hypothetical protein SUN_0257 [Sulfurovum sp. NBC37-1]
gi|151423714|dbj|BAF71217.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 225
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
A+F F+ CN +C +C + G + ++ ++ + E
Sbjct: 22 AAIFW-FAKCN-----------MRCGYCYNKDIVF---GEGEISQEEAIAFLKSRVGLLE 66
Query: 83 KEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGI-------DWICVS 134
VL+GGE L + + + GF+I ++TNG D+I +
Sbjct: 67 G----VVLSGGEATLYSDLAGFCKKIKQLGFKIKLDTNGLNPEMIQELVEEKLVDYIALD 122
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
KA + ++ ++ ++ F FE + D +EE + +
Sbjct: 123 YKAPKEKYLEITKDKHFDRFSKTLNFLIQKQFPFEVRTTVHSDLLRVEEINRIIRDLVKR 182
>gi|239909068|ref|YP_002955810.1| ribonucleoside-triphosphate reductase activating enzyme
[Desulfovibrio magneticus RS-1]
gi|239798935|dbj|BAH77924.1| ribonucleoside-triphosphate reductase activating enzyme
[Desulfovibrio magneticus RS-1]
Length = 256
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GC C +C + + + T ++ + +E + + V
Sbjct: 52 QGCP-----------WGCPYCHNEPLR-EITDAVEHDSASVLAWLEGRKGLLDA----VV 95
Query: 90 LTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP-----QGIDWICVSPKAGC 139
+GGEP LQ ++ A+ GF + T G DW+ + KA
Sbjct: 96 FSGGEPTLQDGLADMLAAVRAMGFHTGLHTTGMFPKALSAVLPLCDWVGLDVKAPR 151
>gi|121535245|ref|ZP_01667059.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermosinus carboxydivorans Nor1]
gi|121306130|gb|EAX47058.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermosinus carboxydivorans Nor1]
Length = 174
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 24/127 (18%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G +F GC +C C G ++
Sbjct: 14 VDGPGLRM---VIF--TQGCP-----------HRCEGCHNPQT-HDPLGGTSTTTGEIIK 56
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+I E + R +GGEP +Q + +A RG I T E +
Sbjct: 57 MINEAKLI-----RGITFSGGEPFIQAKPLCEIARAARARGLNIVTYTGFVFEELLSMGL 111
Query: 131 ICVSPKA 137
S +
Sbjct: 112 RVPSVRE 118
>gi|110800952|ref|YP_695094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
[Clostridium perfringens ATCC 13124]
gi|110675599|gb|ABG84586.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens ATCC 13124]
Length = 273
Score = 41.0 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 46/164 (28%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------- 41
I +I F + G G +F F GCN +
Sbjct: 4 INKIIPFSCVDGPGNRM---VIF--FQGCNFKCLYCHNPETINKCTSCGKCVENCEVGAL 58
Query: 42 --------RLSAQCRFCD--TDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
+C CD + Y+V++L IE+ R +
Sbjct: 59 SISEGKVIWDEEECISCDKCIKLCEHMSSPKLKEYSVEELVKKIEK----DSFFIRGITV 114
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
+GGE L + L + + K G V+TNG + + +
Sbjct: 115 SGGECTLNSEFLIKLFREVKKLGLTCFVDTNGNTKLDDELINLT 158
>gi|308184553|ref|YP_003928686.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
SJM180]
gi|308060473|gb|ADO02369.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
SJM180]
Length = 321
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK + S + + M G +E L + Y
Sbjct: 135 DALKNALEGIEESLKVGLKLKLNMVV---MKGVNDDEILEL-LEYAKNR 179
>gi|168213843|ref|ZP_02639468.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens CPE str. F4969]
gi|170714621|gb|EDT26803.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens CPE str. F4969]
Length = 273
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 46/164 (28%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------- 41
I +I F + G G +F F GCN +
Sbjct: 4 INKIIPFSCVDGPGNRM---VIF--FQGCNFKCLYCHNPETINKCISCGKCVENCEVGAL 58
Query: 42 --------RLSAQCRFCDTDF---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
+C CD + K Y+V++L IE+ R +
Sbjct: 59 SISDGKVIWDEEECISCDKCIKLCENMSSPKIKEYSVEELVKKIEK----DSFFIRGITV 114
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
+GGE L + L + + K G V+TNG + + +
Sbjct: 115 SGGECTLNSEFLIKLFREVKKLGLTCFVDTNGNTKLDDELINLT 158
>gi|148642598|ref|YP_001273111.1| pyruvate formate-lyase activating enzyme, PflA
[Methanobrevibacter smithii ATCC 35061]
gi|148551615|gb|ABQ86743.1| pyruvate formate-lyase activating enzyme, PflA
[Methanobrevibacter smithii ATCC 35061]
Length = 104
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC L +C +C F + +Y++D+L + ++ + V
Sbjct: 29 GCPL-----------RCAYCFNPFTWDGSVEPKKYSIDELYEEVKLDNLYFLATEGDLVF 77
Query: 91 TGGEPLLQ 98
GGEPLL
Sbjct: 78 GGGEPLLY 85
>gi|320536805|ref|ZP_08036802.1| putative anaerobic ribonucleoside-triphosphate reductase activating
protein [Treponema phagedenis F0421]
gi|320146341|gb|EFW37960.1| putative anaerobic ribonucleoside-triphosphate reductase activating
protein [Treponema phagedenis F0421]
Length = 239
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 20/107 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-----VGIQGTKGGRYNVDQLADLIEEQ 77
AVF GCN +C +C V +Y+ L + +
Sbjct: 9 AAVF--LPGCN-----------MRCPYCYNAELACASVTTGPETNEKYSYVPLEEAV-RH 54
Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
V +GGE LL +P LIQ G I ++TNG +
Sbjct: 55 LEKRAGVLTGVVFSGGEALLSPALPDLIQKARSVGLAIKLDTNGLVP 101
>gi|126465594|ref|YP_001040703.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
gi|126014417|gb|ABN69795.1| Radical SAM domain protein [Staphylothermus marinus F1]
Length = 348
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 38/189 (20%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN +C +C + + + L+E + + +
Sbjct: 90 GCNF-----------RCPWCQNYHISWSKPDPDKSIYMEPRKLVE---LAKKLKNHGLCA 135
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW-------ICVSPKAGCDL 141
+ EP + + + + K+G + + TNG + + K
Sbjct: 136 SFNEPTIHLEYLLDVGEYAVKQGLYLTMVTNGYMTLKTIKYLLRHGYTGFSIDIKGCPYT 195
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
K L+ + + ++ G + + P + + N
Sbjct: 196 YKKYLSANPLIIYRNTKTILDHGGHAEMVYLVVP-----KANDWRECYEWIIDN------ 244
Query: 202 VQTH-KFIG 209
H K++G
Sbjct: 245 ---HLKYLG 250
>gi|315267700|gb|ADT94553.1| Radical SAM domain protein [Shewanella baltica OS678]
Length = 286
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 48/169 (28%), Gaps = 14/169 (8%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + S +C CDT + + +++ ++G
Sbjct: 60 NLNNKPRISWDSERCSQCDTCLAVCPKQASPKVTHYTVEEILGILHSQRHF-INGITVSG 118
Query: 93 GE-----PLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
GE P + I+A ++TNG++ + A DLK
Sbjct: 119 GEASLQLPFIIALFKGIKASESLSHLTCMLDTNGSLSLTGWHKLLPFLDGAMVDLKAWQQ 178
Query: 147 QELKLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ + + N + R P + EE LA
Sbjct: 179 DTHRYITGRNNHAVFTSIQLLAQQQKLYEVRLLHIPSITDYEEEIEALA 227
>gi|188587083|ref|YP_001918628.1| glycyl-radical enzyme activating protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179351770|gb|ACB86040.1| glycyl-radical enzyme activating protein family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 310
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 51/157 (32%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------CRFCD-------- 51
G G VF GC L + C C
Sbjct: 25 DGPGIRT---TVFI--KGCPLRCEWCHNPEGLAFESQLLIHHNSCMDCGLCQEICPENAI 79
Query: 52 -TDFVGIQ---------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
T+ Q G + +++ + +E+ + E+
Sbjct: 80 FTEQNSTQINQEKCKKCSICQESCPVNAIEMIGEQMTANKVIEEVEKDKVFFEESKGGVT 139
Query: 90 LTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEP 124
+GGEPL+Q + L ++G V+T+G +
Sbjct: 140 FSGGEPLMQVDFLYETLCRLKEKGIHTTVDTSGYVPW 176
>gi|327459536|gb|EGF05882.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK1]
Length = 267
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 17 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 60
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 61 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 120
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 121 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 180
Query: 169 ER 170
Sbjct: 181 TH 182
>gi|291165209|gb|ADD81200.1| PqqE [Pantoea ananatis]
gi|327393848|dbj|BAK11270.1| coenzyme PQQ synthesis protein E PqqE [Pantoea ananatis AJ13355]
Length = 433
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 16/172 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + +Q D+ + G + +
Sbjct: 64 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELSTEQWIDVFRQARAMGSVQ---LGFS 118
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+P LI+A GF + T+G G+D I +S +A +
Sbjct: 119 GGEPLTRKDLPDLIKAARDLGFYTNLITSGIGLTEKKLEAFSDAGLDHIQISFQASDETL 178
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K F Q + + L + + + I C +
Sbjct: 179 NAALAGSKKAF-QQKLEMARAVKAHGYPMVLNFVLHRHNIDQIDKIIDLCIE 229
>gi|187776896|ref|ZP_02993369.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
15579]
gi|187775555|gb|EDU39357.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
15579]
Length = 300
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 66/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRKEHEIMFFEERCTACGICVKRCPQKVI 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+ G
Sbjct: 71 TMKNNIPVVDEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEESGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ N RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECNVRGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D EN + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIINDVNDNNENIDETIKFI 241
>gi|327472949|gb|EGF18376.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK408]
Length = 267
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 31/172 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF-------------VGIQGT 60
G G VF GC L +C +C T
Sbjct: 27 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPMLDATTKKSIT 70
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G +V+++ + + + E+ G L+GGE Q + +++A ++G A+ET
Sbjct: 71 MGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAKEKGIHTAIET 130
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
+E + +D I DLK + V N I + F
Sbjct: 131 TAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAFTH 182
>gi|325264173|ref|ZP_08130905.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
gi|324030657|gb|EGB91940.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
D5]
Length = 317
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 46/163 (28%), Gaps = 52/163 (31%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-------- 50
++ G G R VF F GC L + + C C
Sbjct: 28 YSVHDGPGI---RSLVF--FKGCPLRCQWCHNPETHDPLPELLFNDELCIGCGACVVECP 82
Query: 51 -------------------------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
D + G + G Y VD++ + + I + G
Sbjct: 83 TQAISVVDNQIKTEKQNCLLKQQCVDVCYAGARKISGHYYTVDEVYEKVIRDRIFYDTTG 142
Query: 86 RYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQ 126
L+GGE L+ Q L G A+ET G +
Sbjct: 143 GGVTLSGGEVLVYWKFAAQLLQKLKHGGIHTAIETCGYSPWNE 185
>gi|167039716|ref|YP_001662701.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
gi|300915035|ref|ZP_07132350.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
gi|326389748|ref|ZP_08211313.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
gi|166853956|gb|ABY92365.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
gi|300888759|gb|EFK83906.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
gi|325994230|gb|EGD52657.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
Length = 333
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 18/125 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +FC + Q +G + QL + Q
Sbjct: 87 GCNLKC-----------KFCQNWEIAHQKWEGDYISPQQLIAAAKRQRDN-----IGIAF 130
Query: 91 TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EPL+ + + K G + + TNG I + D+K
Sbjct: 131 TYNEPLIWYEYVHDGLIEAKKEGLKTVLVTNGYINLEPLKKILPYVDAMNIDVKAFTEDF 190
Query: 149 LKLVF 153
K +
Sbjct: 191 YKKIV 195
>gi|307724957|ref|YP_003904708.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
gi|307582018|gb|ADN55417.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
Length = 328
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 18/125 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +FC + Q +G + QL + Q
Sbjct: 82 GCNLKC-----------KFCQNWEIAHQKWEGDYISPQQLIAAAKRQRDN-----IGIAF 125
Query: 91 TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EPL+ + + K G + + TNG I + D+K
Sbjct: 126 TYNEPLIWYEYVHDGLIEAKKEGLKTVLVTNGYINLEPLKKILPYVDAMNIDVKAFTEDF 185
Query: 149 LKLVF 153
K +
Sbjct: 186 YKKIV 190
>gi|205354307|ref|YP_002228108.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205274088|emb|CAR39096.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
(pfl-activating enzyme) [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326629431|gb|EGE35774.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 292
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78
Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
C D G + G +D+L + + I G L+GGE L+Q
Sbjct: 79 CLRDADECPSGAFESIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 139 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDAERAREVIN 189
>gi|83596383|gb|ABC25540.1| glycerol dehydratase activator [Roseburia inulinivorans DSM 16841]
Length = 264
Score = 41.0 bits (95), Expect = 0.11, Method: Composition-based stats.
Identities = 42/222 (18%), Positives = 64/222 (28%), Gaps = 44/222 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55
IF ++ G G VF GC L +CR+C
Sbjct: 11 IFDIQRYSIHDGPGVRT---IVF--LKGCAL-----------RCRWCCNPESQSFEVETM 54
Query: 56 ---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKR 110
G G V ++ +E + G L+GGE LQ + L +A
Sbjct: 55 TINGKPKVMGKDVTVAEVMKTVERDMPYYLQSGGGITLSGGECTLQPEFSLGLLRAAKDL 114
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDF- 168
G A+E+ + + D+K ++ K N+ EN +
Sbjct: 115 GISTAIESMAYAKYEVIETLLPYLDTYLMDIKHMNPEKHKEYTGHDNLRMLENALRVAHS 174
Query: 169 ---ERFSLQPMDGPFLEENTNL--AISYCFQNPKWRLSVQTH 205
E P+ F L + P R Q H
Sbjct: 175 GQTELIIRVPVIPGFNATEQELLDIAKFADTLPGVR---QIH 213
>gi|255658493|ref|ZP_05403902.1| molybdenum cofactor biosynthesis protein A [Mitsuokella multacida
DSM 20544]
gi|260849292|gb|EEX69299.1| molybdenum cofactor biosynthesis protein A [Mitsuokella multacida
DSM 20544]
Length = 329
Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98
DR + +CR+C + +G + R+ ++ + +++ R LTGGEPL+ +
Sbjct: 18 DRCNLRCRYC----MPEEGVEKLRHEDILRFDEIVRIVRALASLGVRKVRLTGGEPLIRR 73
Query: 99 VDVPLIQALNK-RGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF--- 153
V L++ ++ G E IA+ TNG + D + +AG LK
Sbjct: 74 NIVELVREIHAVPGIETIAMTTNGVMLADMAEDLV----QAGLTGINISLDTLKAASFTE 129
Query: 154 ---------PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200
+ + G +F+ P+ G EE +L + + P W+
Sbjct: 130 LTRRPFFTRVEDGIEAIAATGLKDVKFNCVPIAGVNEEELPDLVARFTRERP-WKF 184
>gi|188996403|ref|YP_001930654.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931470|gb|ACD66100.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 375
Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 18/101 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + S D+ D++ + + ++ + +
Sbjct: 33 CNLSCLHCYSKASV-----DSKDA---------LTTDEIVNTLPSLI---NAGIKFIIFS 75
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPLL+ D+ + Q K+G + TNG + I
Sbjct: 76 GGEPLLRKDIFEIAQECKKQGIITYLSTNGMYINESNVKNI 116
>gi|126179411|ref|YP_001047376.1| putative molybdenum cofactor biosynthesis protein A [Methanoculleus
marisnigri JR1]
gi|125862205|gb|ABN57394.1| GTP cyclohydrolase subunit MoaA [Methanoculleus marisnigri JR1]
Length = 292
Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + +C +C + + + +A+L+ + + R TGGEPLL+ D+
Sbjct: 21 RCNLRCIYC---HAEGEVNPEEQMSAGDIAELM---RVGVQFGIRSIKFTGGEPLLRRDL 74
Query: 102 PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIK---GGQELKL 151
I G E ++ TNGT G+ + VS + + + G L
Sbjct: 75 VDIIRSVPPGVESSLTTNGTLLAAKAAELKEAGLARVNVSLDSLRPERYREITGKDCLAD 134
Query: 152 VFPQVNVSPE 161
V ++ + E
Sbjct: 135 VLKGIDAAIE 144
>gi|150401479|ref|YP_001325245.1| radical SAM domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150014182|gb|ABR56633.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
Length = 335
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 24/183 (13%)
Query: 23 VAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+VF GCN Q+ + + Y D + ++
Sbjct: 73 SSVFSVATGGCNFRCLHCQNWQI-------SQYAPDDIPYNELYPEDIVNMAVK------ 119
Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQ----GIDWICVSP 135
T EP + ++ + TNG IE ID + +
Sbjct: 120 -YNCDGIAYTYTEPTIFYELMNDTSNIAKEKALFNTMITNGYIEKEPLKNLKIDAMNIDI 178
Query: 136 KAGCDLKIKGGQ-ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K + +L+ V + + I + + P +E + L I +
Sbjct: 179 KGNEKFYKEVCFAKLEPVLETCINAKKLGIHCEITNLII-PTYNDAIE-DIRLIIEFVKD 236
Query: 195 NPK 197
Sbjct: 237 KLG 239
>gi|20094332|ref|NP_614179.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
gi|19887388|gb|AAM02109.1| Fe-S oxidoreductase fused to a metal-binding domain [Methanopyrus
kandleri AV19]
Length = 468
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C C + G + ++ ++IE E +
Sbjct: 127 CNL-----------RCEHC---YSEAGKPAPGELDTERALEVIERF---SEWNVPGLAFS 169
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPL++ D L +A G A+ TNG
Sbjct: 170 GGEPLMRDDFFELAEASANEGMFTALATNG 199
>gi|324990394|gb|EGC22332.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK353]
gi|327459135|gb|EGF05483.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK1057]
Length = 267
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 17 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 60
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 61 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 120
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 121 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 180
Query: 169 ER 170
Sbjct: 181 TH 182
>gi|325969859|ref|YP_004246050.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Spirochaeta sp. Buddy]
gi|324025097|gb|ADY11856.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Spirochaeta sp. Buddy]
Length = 234
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
FC GCN +R + + C TD+ + +
Sbjct: 22 FFC--QGCNYDCFYCHNRALIEPKSCITDY-----------------QEAQTFLQQRKGF 62
Query: 85 GRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEP 124
+ V++GGEP L + ++ + GF + ++TNG+
Sbjct: 63 IQAVVISGGEPSLQHDLMEFVEFIRNLGFAVKLDTNGSRPQ 103
>gi|312134287|ref|YP_004001625.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor owensensis OL]
gi|311774338|gb|ADQ03825.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor owensensis OL]
Length = 231
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCN C FC + G + D + E +
Sbjct: 23 FGGCNFS-----------CPFC---YNSQLINFKGSFMDDSIFF---EYLDKRKGIVDAV 65
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L I+ + R + ++TNG+
Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKNRSLVVKLDTNGSRP 102
>gi|146303294|ref|YP_001190610.1| radical SAM domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145701544|gb|ABP94686.1| Radical SAM domain protein [Metallosphaera sedula DSM 5348]
Length = 366
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C C + G + + +++ + ++ +L+
Sbjct: 39 CNL-----------RCLHC---YSGSGTQLFQDLPLSTWINAVKQ---ASDMGVKHILLS 81
Query: 92 GGEPL-LQVDVPLIQALNKRGFEIAVETNGTI 122
GGEPL + + + +RG + + TNGT+
Sbjct: 82 GGEPLARRDLHLIAREAWERGIRVELSTNGTM 113
>gi|325689506|gb|EGD31511.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK115]
Length = 267
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 17 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 60
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 61 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 120
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 121 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 180
Query: 169 ER 170
Sbjct: 181 TH 182
>gi|125717152|ref|YP_001034285.1| pyruvate formate-lyase 3, putative [Streptococcus sanguinis SK36]
gi|125497069|gb|ABN43735.1| Pyruvate formate-lyase 3, putative [Streptococcus sanguinis SK36]
gi|328945301|gb|EGG39454.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK1087]
Length = 267
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 17 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 60
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 61 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 120
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 121 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 180
Query: 169 ER 170
Sbjct: 181 TH 182
>gi|323353534|ref|ZP_08088067.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
VMC66]
gi|322121480|gb|EFX93243.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
VMC66]
Length = 267
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 17 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 60
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 61 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 120
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 121 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 180
Query: 169 ER 170
Sbjct: 181 TH 182
>gi|108563178|ref|YP_627494.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
HPAG1]
gi|122980501|sp|Q1CTA2|MOAA_HELPH RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|107836951|gb|ABF84820.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
HPAG1]
Length = 321
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 27/176 (15%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLNFFD--NEELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKKAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
LK + S + + M +E +L + Y R+ +
Sbjct: 135 DALKNTLEGIEESLKVGLKLKLNTVV---MKSVNGDEILDL-LEYAKNR---RIQI 183
>gi|325693826|gb|EGD35745.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK150]
Length = 267
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 17 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 60
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 61 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 120
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 121 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 180
Query: 169 ER 170
Sbjct: 181 TH 182
>gi|146296194|ref|YP_001179965.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145409770|gb|ABP66774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 231
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCN C FC + G + D + E +
Sbjct: 23 FGGCNFS-----------CPFC---YNSQLVNFKGNFMDDSIFF---EYLDKRKGIVDAV 65
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L I+ + +R + ++TNG+
Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKQRDLLVKLDTNGSRP 102
>gi|77918971|ref|YP_356786.1| hypothetical protein Pcar_1369 [Pelobacter carbinolicus DSM 2380]
gi|77545054|gb|ABA88616.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
Length = 471
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 23/110 (20%)
Query: 16 EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
EG G +F CN +C +C T +D +
Sbjct: 75 EG---GWSCLFI-TGRCN-----------CRCFYCPTAQTENDLPTTNTVEFRTPSDYV- 118
Query: 76 EQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR---GFEIAVETNG 120
R +TGGEPLL + ++A+ K G + + TNG
Sbjct: 119 --GYLERFGFRGASVTGGEPLLNFKRSLAYVRAIKKHFGDGMHVWLYTNG 166
>gi|114567780|ref|YP_754934.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114338715|gb|ABI69563.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 254
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 38/122 (31%)
Query: 23 VAV-FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT-------------------KG 62
AV F R GCN +C FC + + G
Sbjct: 19 AAVLFTR--GCNF-----------RCPFCHNVHLLAEEKREPGAESSLQAGGEKDNNGDG 65
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNGT 121
Y+++ + + + E+ + V++GGEP L ++ ++ + + G+ I +++NG+
Sbjct: 66 KTYDIESILEFLRERKGFLDA----VVISGGEPTLHPELAQDLRRIKEIGYLIKLDSNGS 121
Query: 122 IE 123
Sbjct: 122 NP 123
>gi|114567801|ref|YP_754955.1| pyruvate-formate lyase-activating enzyme [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114338736|gb|ABI69584.1| pyruvate-formate lyase-activating enzyme [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 336
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 22/175 (12%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL+ +C + + L ++ + +
Sbjct: 83 GCNLFC-----------PYCQNYSLAHEKPPTREITPLLLTEIARQSI---DDGSIGFAF 128
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ- 147
T EP + + +L + G + + TNG IE + + + D+K
Sbjct: 129 TYNEPTIWYEYVRDAAYSLKEAGLKSVLVTNGYIERAPLEELLPLVDAMNIDVKAFNDDF 188
Query: 148 ---ELKLVFPQVNVSPENYIGFDFERF--SLQPMDGPFLEENTNLAISYCFQNPK 197
K V + E + L P + EE LA NP+
Sbjct: 189 YRKHCKGRLEAVKATVERAVEMTHVEITTLLIPGENDEPEEIKALASWLAGLNPQ 243
>gi|289523484|ref|ZP_06440338.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503176|gb|EFD24340.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 225
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 20/111 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
AV +GCN +C FC G + E +
Sbjct: 22 VSAV-IFLTGCNF-----------RCPFC------HNGLLVNEQVPALNDIKVLEHIKSR 63
Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
V++GGEP L ++ L + G + ++TNG+ +
Sbjct: 64 RSFLDGVVISGGEPTLDIKRLEKILFQLKEVGLPVKLDTNGSNPLALEMLI 114
>gi|237711557|ref|ZP_04542038.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237725989|ref|ZP_04556470.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752984|ref|ZP_06088553.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229435797|gb|EEO45874.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229454252|gb|EEO59973.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236170|gb|EEZ21665.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 360
Score = 40.7 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
R + CR C +D I G + +++ + + ++TGGEPL++
Sbjct: 38 CTLRCNLHCRHCGSDCKKIAG--HPDMPKEDFLRVLDSVSAQNDPHKIFVIITGGEPLMR 95
Query: 99 -VDVPLIQALNKRGFEIAVETNGTIE 123
+A+ +RGF + TNG
Sbjct: 96 KDLEECGRAIYERGFPWGMVTNGLYM 121
>gi|325688591|gb|EGD30608.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK72]
Length = 267
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 17 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 60
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 61 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 120
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 121 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 180
Query: 169 ER 170
Sbjct: 181 TH 182
>gi|77918997|ref|YP_356812.1| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM
2380]
gi|77545080|gb|ABA88642.1| glycerol dehydratase, cobalamin-independent, small subunit
[Pelobacter carbinolicus DSM 2380]
Length = 322
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 57/176 (32%), Gaps = 14/176 (7%)
Query: 34 LWSGREQDRLSAQC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
L R++ L QC +FC + G G +V +L +IE E+ +G
Sbjct: 98 LIIDRDRCTLCGQCAKFC---YAGAINIIGRYLSVPELVTMIERDRKFYEQSNGGVTFSG 154
Query: 93 GEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GEP Q +QA+ RG A+ET+ + + D+K E K
Sbjct: 155 GEPTAQPEFLKAALQAIQARGIHTAIETSSFVAWETFASILENVDLVLTDIKHMDDAEHK 214
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
+ N I R L P + N + Q +
Sbjct: 215 RLTGVSNKVILENIRNISRLGIPIKIRLPLIPGFN-DSDRNLAATAEFVEQLSNVQ 269
>gi|309781163|ref|ZP_07675900.1| molybdenum cofactor biosynthesis protein A [Ralstonia sp.
5_7_47FAA]
gi|308919984|gb|EFP65644.1| molybdenum cofactor biosynthesis protein A [Ralstonia sp.
5_7_47FAA]
Length = 373
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERMARLFIEHGVEKIRLTGGEPLLRK 111
Query: 100 DVP-----LIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ L + G ++ + TNG G+ + VS D +
Sbjct: 112 DIERLVEKLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLSRVTVSLDGIDDATFRR 171
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 172 MNDVDFAVSEV 182
>gi|303328530|ref|ZP_07358966.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
gi|302861361|gb|EFL84299.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
Length = 480
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G C C + G T+G LA L +
Sbjct: 93 GCPFDCGLCPLHAQHTCTGLVEVTMRCDLACPVCYAGAGKTEGTLPPDPPLAALAAQLDS 152
Query: 80 TGEKEGRY-CVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
G ++GGEP ++ D+P ++ +RGF + + TNG
Sbjct: 153 LKAASGACNVQISGGEPTIREDLPAIVTLARERGFGLVQLNTNG 196
>gi|241662581|ref|YP_002980941.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
12D]
gi|240864608|gb|ACS62269.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
12D]
Length = 373
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERMARLFIEHGVEKIRLTGGEPLLRK 111
Query: 100 DVP-----LIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ L + G ++ + TNG G+ + VS D +
Sbjct: 112 DIERLVEMLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLSRVTVSLDGIDDATFRR 171
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 172 MNDVDFAVSEV 182
>gi|212695406|ref|ZP_03303534.1| hypothetical protein BACDOR_04955 [Bacteroides dorei DSM 17855]
gi|212662041|gb|EEB22615.1| hypothetical protein BACDOR_04955 [Bacteroides dorei DSM 17855]
Length = 348
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
R + CR C +D I G + +++ + + ++TGGEPL++
Sbjct: 26 CTLRCNLHCRHCGSDCKKIAG--HPDMPKEDFLRVLDSVSAQNDPHKIFVIITGGEPLMR 83
Query: 99 -VDVPLIQALNKRGFEIAVETNGTIE 123
+A+ +RGF + TNG
Sbjct: 84 KDLEECGRAIYERGFPWGMVTNGLYM 109
>gi|167581236|ref|ZP_02374110.1| radical SAM domain protein [Burkholderia thailandensis TXDOH]
Length = 239
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 24/128 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GC G +C + + + D +
Sbjct: 30 AVVFV--QGCPWRCG-----------YCHNPHL-----QPRSRPAEIEWDALLAFLARRV 71
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPK 136
V +GGEP + I + + GF++ + + GT +DWI + K
Sbjct: 72 GLIDAVVFSGGEPSIDPALAAAIDDVRRLGFKVGMHSAGTHPRRLSQLLPSLDWIGLDVK 131
Query: 137 AGCDLKIK 144
A D +
Sbjct: 132 APFDDYTR 139
>gi|83720018|ref|YP_442340.1| radical SAM domain-containing protein [Burkholderia thailandensis
E264]
gi|167619323|ref|ZP_02387954.1| radical SAM domain protein [Burkholderia thailandensis Bt4]
gi|257138539|ref|ZP_05586801.1| radical SAM domain-containing protein [Burkholderia thailandensis
E264]
gi|83653843|gb|ABC37906.1| radical SAM domain protein [Burkholderia thailandensis E264]
Length = 239
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 24/128 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GC G +C + + + D +
Sbjct: 30 AVVFV--QGCPWRCG-----------YCHNPHL-----QPRSRPAEIEWDALLAFLARRV 71
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPK 136
V +GGEP + I + + GF++ + + GT +DWI + K
Sbjct: 72 GLIDAVVFSGGEPSIDPALAAAIDDVRRLGFKVGMHSAGTHPRRLSRLLPSLDWIGLDVK 131
Query: 137 AGCDLKIK 144
A D +
Sbjct: 132 APFDDYTR 139
>gi|51245329|ref|YP_065213.1| heme biosynthesis protein [Desulfotalea psychrophila LSv54]
gi|50876366|emb|CAG36206.1| related to heme biosynthesis protein [Desulfotalea psychrophila
LSv54]
Length = 336
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 17 GGHAGRVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
G AG VF + CNL A C ++ + + + +A ++
Sbjct: 10 GFQAGERNVFLHILTACNLSC--------AHC------YINPEQHGSNTLDKETIAHWLD 55
Query: 76 EQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEP 124
+K +L GGEP L +I +GF + V++NG +
Sbjct: 56 LFADAEKKSN--LILLGGEPTLHPDLAEIISIAKAKGFSVTVDSNGYLHH 103
>gi|324992219|gb|EGC24141.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK405]
gi|324994310|gb|EGC26224.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK678]
gi|327468653|gb|EGF14132.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK330]
gi|327490737|gb|EGF22518.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK1058]
Length = 258
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 8 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 51
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++A
Sbjct: 52 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 112 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 171
Query: 169 ER 170
Sbjct: 172 TH 173
>gi|26251268|ref|NP_757308.1| hypothetical protein c5462 [Escherichia coli CFT073]
gi|26111701|gb|AAN83882.1|AE016772_60 Hypothetical protein yjjW [Escherichia coli CFT073]
gi|307556612|gb|ADN49387.1| radical SAM domain protein [Escherichia coli ABU 83972]
Length = 287
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 41/225 (18%), Positives = 69/225 (30%), Gaps = 55/225 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLTVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLA 188
+ + N + I E R + P +L+ LA
Sbjct: 185 QLTGRDNQQIKRSICLLAERGKLAELRLLVIPCQVDYLQHIEELA 229
>gi|134300007|ref|YP_001113503.1| radical SAM domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134052707|gb|ABO50678.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
Length = 390
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +CR C + K N + I + E + + +
Sbjct: 47 CNL-----------RCRHC---YSESDSKKYNELNTQEAKQFINDL---AEFKVPVILFS 89
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPL++ D L ++G + TNGT+ P+ I
Sbjct: 90 GGEPLVRPDFFELAGYATQKGIRTTISTNGTLITPEAAARI 130
>gi|71282516|ref|YP_270877.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H]
gi|71148256|gb|AAZ28729.1| putative heme biosynthesis protein [Colwellia psychrerythraea 34H]
Length = 410
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + QC+ C + + + +Q+ I++ + +L+GGEPLL+ D+
Sbjct: 39 RCNLQCKHCYS--TSLDIDFKDELSTEQVKTTIDDLKVA---HVPVLILSGGEPLLRPDI 93
Query: 102 -PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
+ + ++GF +A+ TNGT+ I+ I + + I G +E F +
Sbjct: 94 YEITEYAKQKGFYLALSTNGTLINEDNIEAIKAAEYQYVGISIDGLEEFHDEFRRQK 150
>gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
15897]
gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
15897]
Length = 306
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 72/228 (31%), Gaps = 58/228 (25%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFCDTD-FVGIQG-- 59
G G VF F GC L + S +C C T +G
Sbjct: 24 DGPGIRT---TVF--FKGCPLRCEWCANPESQAVSPQVLYNNEKCLHCATCVHTCPKGAI 78
Query: 60 ------------------------------TKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
+G V+++ D+ + E+
Sbjct: 79 KMEDGLIRIDHKTCDHCMECVKACPGKALTQEGEIKTVEEVVDICMQDIDFYEESNGGVT 138
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP------QGIDWICVSPKAGCDL 141
L+GGE ++Q D + L+ AL ++G +A+ET G ++ D + K +
Sbjct: 139 LSGGEAMVQYDFMMALVHALKEKGLHLAIETTGIVDHEKFKKAAPLFDLLLFDVKQADPM 198
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLA 188
K K G + Q N G + R + P LE+ LA
Sbjct: 199 KHKKGTHVTNEVIQKNFKWAIEQGLNVLPRIPVIPGFNETLEDAKELA 246
>gi|158321418|ref|YP_001513925.1| glycyl-radical activating family protein [Alkaliphilus oremlandii
OhILAs]
gi|158141617|gb|ABW19929.1| glycyl-radical enzyme activating protein family [Alkaliphilus
oremlandii OhILAs]
Length = 316
Score = 40.7 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 8/136 (5%)
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIE 123
V +L ++IEE E G L+GGE +Q + G A+ET G +
Sbjct: 118 TVSELLEIIEEDTAFYEMSGGGVTLSGGEVTMQPEFATNLLMTCKNEGINTAIETCGYTK 177
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFL-- 181
+ + DLK ++ N + + ER + P L
Sbjct: 178 LEDILQIAQFTDLFLFDLKHMDSEKHYHFTGVRNERILDNLKELLERRYNVQIRMPLLKG 237
Query: 182 ----EENTNLAISYCF 193
+E+ + +
Sbjct: 238 VNDGQEDIEKIVKFLM 253
>gi|226946196|ref|YP_002801269.1| pyrroloquinoline quinone biosynthesis protein PqqE [Azotobacter
vinelandii DJ]
gi|259534381|sp|C1DEW5|PQQE_AZOVD RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|226721123|gb|ACO80294.1| coenzyme PQQ biosynthesis E [Azotobacter vinelandii DJ]
Length = 383
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 47/171 (27%), Gaps = 14/171 (8%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C G + + IE E +
Sbjct: 14 PLWLLAELTYRCPLQCPYCSNPLDF--ARHGAELSTAEW---IEVFRQARELGAAQLGFS 68
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ-EL 149
GGEPL+ Q LI A G+ + T+G I + + + EL
Sbjct: 69 GGEPLVRQDLSELIGAARGLGYYTNLITSGIGLSEARIAEFATAGLDHIQVSFQAADAEL 128
Query: 150 KLVFP------QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ ++ + L + + I C +
Sbjct: 129 NDLLAGSGKAFARKLAMARAVKAQGYPMVLNFVTHRHNIDAIERIIELCLE 179
>gi|312792558|ref|YP_004025481.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312877157|ref|ZP_07737127.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor lactoaceticus 6A]
gi|311796057|gb|EFR12416.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor lactoaceticus 6A]
gi|312179698|gb|ADQ39868.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 231
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCN C FC + G + D + E +
Sbjct: 23 FGGCNFS-----------CPFC---YNSQLVNFKGSFMDDSIFF---EYLDKRKGIVDAV 65
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
+TGGEP L I+ + R + ++TNG+
Sbjct: 66 CITGGEPTLNEEYLTEFIKKIKNRSLLVKLDTNGSRP 102
>gi|315497758|ref|YP_004086562.1| radical sam domain protein [Asticcacaulis excentricus CB 48]
gi|315415770|gb|ADU12411.1| Radical SAM domain protein [Asticcacaulis excentricus CB 48]
Length = 466
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 31 GCNLWSGREQDRL----------SAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G D + +C C T + + G +++++ + + + +
Sbjct: 80 GCPYDCGLCSDHEQHSCVSIVELTDRCNLTCPTCYASSSPSHGRHRSLEEI-ETMLDIVV 138
Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNG 120
E E L+GGEP L D ++ R + + TNG
Sbjct: 139 ASEGEPDVVQLSGGEPTLHPDFFAVMDMAKARPIKHLMINTNG 181
>gi|147676803|ref|YP_001211018.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
thermopropionicum SI]
gi|146272900|dbj|BAF58649.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
thermopropionicum SI]
Length = 336
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 14/114 (12%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G FC + +Q ++ +Q
Sbjct: 81 GCNLRCG-----------FCQNWTIAHGDPDAAEITPEQAVEMALQQ-TGRGLPNVGIAY 128
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
T EP + + + K G + + TNG + D + D+K
Sbjct: 129 TYSEPFMWYEFVWDTARLARKAGLKNVLVTNGYVNETPLRDILPYIDAMNIDVK 182
>gi|313889016|ref|ZP_07822675.1| putative pyruvate formate-lyase 1-activating enzyme [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845002|gb|EFR32404.1| putative pyruvate formate-lyase 1-activating enzyme [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 309
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 58/241 (24%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-------- 50
++ G G VF GC L + S + C C
Sbjct: 22 YSINDGPGIRT---IVF--LKGCPLRCIWCSNPESQRKGKELMFREILCIHCGMCIKACK 76
Query: 51 ----DTD--------------------FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
D KG NV+++ +++ +
Sbjct: 77 QKALDPKNPNFIDRDKCVMCEECANVCPSSALEVKGKVMNVEEVITELKKDDSFYYRSNG 136
Query: 87 YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT------IEPPQGIDWICVSPKAG 138
L+GGE L+Q + + +A RG+ A+ET G + ID + + KA
Sbjct: 137 GITLSGGETLMQPEFAKEIFKACRSRGWHTAIETEGYASEEVIRDVVPHIDLVLLDIKAN 196
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
D K + + N I R P +E + +++ P
Sbjct: 197 NDELHKKVTGVSNELIKKNARILQEIANTIIRVPTIPGVNADEKEFGD-IVAFVKTLPNV 255
Query: 199 R 199
+
Sbjct: 256 K 256
>gi|288574329|ref|ZP_06392686.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570070|gb|EFC91627.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Dethiosulfovibrio peptidovorans DSM 11002]
Length = 228
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
+F R GC + C +C G +G + + + D + + +
Sbjct: 22 IFTR--GC-----------TFACPWC---HNGGLLDQGEGLDEEDILDFLRRRIKIIDG- 64
Query: 85 GRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
V++GGEP + D+P I + K G I ++TNG++
Sbjct: 65 ---LVISGGEPTVHEDLPRFISEVRKMGLLIKLDTNGSLP 101
>gi|330809991|ref|YP_004354453.1| putative radical-activating enzyme [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378099|gb|AEA69449.1| putative radical-activating enzyme [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 228
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
L + +CR+C + R + + + + V +GG
Sbjct: 19 LACVLFCQGCAWRCRYCHNPQL-----IPPRGSEEVDWCRVLAFLQRRQDLLDAVVFSGG 73
Query: 94 EPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
EP LQ P ++ + + GF I + + G
Sbjct: 74 EPTLQDGLAPAMEQVRQMGFRIGLHSAGIKP 104
>gi|157736630|ref|YP_001489313.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri
RM4018]
gi|167011811|sp|A8ERS0|MOAA_ARCB4 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|157698484|gb|ABV66644.1| molybdopterin biosynthesis protein A [Arcobacter butzleri RM4018]
Length = 323
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 18/167 (10%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C + F + + + L I+ G K+ R +TGGEPLL+
Sbjct: 19 ERCNFRCQYCMPEKPFSWVPREN--LLSYEDLFKFIKASIDEGIKKVR---ITGGEPLLR 73
Query: 99 VDVPLIQAL---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
D+ + K+ ++A+ TNG + K +E Q
Sbjct: 74 EDLDFFIKMVFDYKKDIDLALTTNGYLLSKMAKKLKDAGLKRVNISLDTLNKETAQKIAQ 133
Query: 156 VNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQN 195
+V + G + + + P+ G E++ + +C
Sbjct: 134 KDVLEKVLEGIEEASKVGLKIKINCVPLKGV-SEKDVLEVLEFCKSR 179
>gi|91774057|ref|YP_566749.1| ribonucleoside-triphosphate reductase, anaerobic-like protein
[Methanococcoides burtonii DSM 6242]
gi|91713072|gb|ABE52999.1| Radical SAM protein [Methanococcoides burtonii DSM 6242]
Length = 261
Score = 40.7 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 20/105 (19%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G+ +V GC +C +C + +E++ +
Sbjct: 18 GKASVVLFLRGCPF-----------RCPYCHNYEILT-------VPDMVDVKELEKKIDS 59
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQAL--NKRGFEIAVETNGTIE 123
V +GGEPL Q + + A K+ + + TNG
Sbjct: 60 SSLFVSSVVFSGGEPLAQKNALIHLASYAKKKDLLVGIHTNGYYP 104
>gi|146301796|ref|YP_001196387.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Flavobacterium johnsoniae UW101]
gi|146156214|gb|ABQ07068.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Flavobacterium johnsoniae UW101]
Length = 195
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 45 AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PL 103
+C +C + G+ + + + + ++ + + VL+GGE + ++ P
Sbjct: 1 MRCSYCYNPDIVF---GKGKLDFENILNFLKSRIGLLDG----VVLSGGECTIHKNIIPF 53
Query: 104 IQALNKRGFEIAVETNGTIE 123
I+ + GF + ++TNG+
Sbjct: 54 IEEIKALGFIVKIDTNGSKP 73
>gi|326201862|ref|ZP_08191732.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
gi|325987657|gb|EGD48483.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
Length = 346
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + +C +C+ + + + L +LIE + TGGEP ++ D+
Sbjct: 15 RCNFRCVYCNPEGLWEDKEN---VSFKDLVELIEA---SRCNGITRIHWTGGEPTIRQDL 68
Query: 102 P-LIQALNKRGFEIA-VETNGTIEPPQGIDWI 131
P L++A + G + TNG +I
Sbjct: 69 PELMKAAKEIGITQQIITTNGQTLHNDINKYI 100
>gi|268678801|ref|YP_003303232.1| molybdenum cofactor biosynthesis protein A [Sulfurospirillum
deleyianum DSM 6946]
gi|268616832|gb|ACZ11197.1| molybdenum cofactor biosynthesis protein A [Sulfurospirillum
deleyianum DSM 6946]
Length = 322
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 20/168 (11%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C + F + + DL + ++ +TGGEPLL+
Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKEN-----LLSFEDLFLFVKVAIDEGISKIRITGGEPLLR 73
Query: 99 VDVPLIQAL---NKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGGQE 148
D+ A+ +K G ++A+ TNG G+ + VS +
Sbjct: 74 TDLDKFIAMINHHKSGLDLALTTNGFLLKGAAQKLKDAGLKRVNVSL-DSLKADVAAKMA 132
Query: 149 LKLVFPQVNVSPENYIGFDFE-RFSLQPMDGPFLEENTNLAISYCFQN 195
K V +V E + + + ++ P+ G +E + + Y
Sbjct: 133 QKDVLTRVQEGIEEALRVGLKVKINMVPIQGINADEVLD-VLEYAKAR 179
>gi|299067006|emb|CBJ38201.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
CMR15]
Length = 373
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + +++ + IE + E LTGGEPLL+
Sbjct: 52 DRCNFRCIYCMPKDVFDKDYRFLQHSELLSFEEIERMVRLFIEHGVEKIRLTGGEPLLRK 111
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 112 DIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDDATFRR 171
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 172 MNDVDFAVAEV 182
>gi|24211989|sp|Q8Y0K4|MOAA_RALSO RecName: Full=Molybdenum cofactor biosynthesis protein A
Length = 345
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + +++ + IE + E LTGGEPLL+
Sbjct: 24 DRCNFRCIYCMPKDVFDKDYRFLQHSELLSFEEIERMVRLFIEHGVEKIRLTGGEPLLRK 83
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 84 DIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDDATFRR 143
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 144 MNDVDFAVAEV 154
>gi|17545758|ref|NP_519160.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
GMI1000]
gi|17428052|emb|CAD14741.1| probable molybdenum cofactor biosynthesis protein a [Ralstonia
solanacearum GMI1000]
Length = 373
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + +++ + IE + E LTGGEPLL+
Sbjct: 52 DRCNFRCIYCMPKDVFDKDYRFLQHSELLSFEEIERMVRLFIEHGVEKIRLTGGEPLLRK 111
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 112 DIERLVEMLARLNTRDGKPLDLTLTTNGALLARKAQALKDAGLTRVTVSLDAIDDATFRR 171
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 172 MNDVDFAVAEV 182
>gi|315635794|ref|ZP_07891056.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri
JV22]
gi|315479773|gb|EFU70444.1| molybdenum cofactor biosynthesis protein A [Arcobacter butzleri
JV22]
Length = 323
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 18/167 (10%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C + F + + + L I+ G K+ R +TGGEPLL+
Sbjct: 19 ERCNFRCQYCMPEKPFSWVPREN--LLSYEDLFKFIKASIDEGIKKVR---ITGGEPLLR 73
Query: 99 VDVPLIQAL---NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
D+ + K+ ++A+ TNG + K +E Q
Sbjct: 74 EDLDFFIKMVFDYKKDIDLALTTNGYLLSKMAKKLKDAGLKRVNISLDTLNKETAQKIAQ 133
Query: 156 VNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQN 195
+V + G + + + P+ G E++ + +C
Sbjct: 134 KDVLEKVLEGIEEASKVGLKIKINCVPLKGV-SEKDVLEVLEFCKSR 179
>gi|261339132|ref|ZP_05966990.1| hypothetical protein ENTCAN_05353 [Enterobacter cancerogenus ATCC
35316]
gi|288318975|gb|EFC57913.1| putative pyruvate formate-lyase 3-activating enzyme [Enterobacter
cancerogenus ATCC 35316]
Length = 299
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKRGFEIAVETN 119
G V ++ + ++ G L+GGEP + + +A ++ G AVET
Sbjct: 101 GDTQPVAEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAHDLFKASHEHGIHTAVETC 160
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
+ + DLK G K
Sbjct: 161 LHVPWHSIAPSLPYVDLFLADLKHVDGDVFKQ 192
>gi|319790529|ref|YP_004152162.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
gi|317115031|gb|ADU97521.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
Length = 219
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
R CNL C C + + + Y +L E+ +
Sbjct: 30 LRL--CNLN-----------CYHCHNKHLAPKEYERFNY-----GELEEKLSLCKLLGVE 71
Query: 87 YCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
+++GGEP L+ ++ + ++GF + ++TNGT
Sbjct: 72 LVIVSGGEPTLEPRLEEGLKFIKEKGFPVRLDTNGTEP 109
>gi|258404207|ref|YP_003196949.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfohalobium retbaense DSM 5692]
gi|257796434|gb|ACV67371.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfohalobium retbaense DSM 5692]
Length = 208
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL C C + + + + ++ +
Sbjct: 32 TGGCNL-----------HCPTCHNAGLAWHPEEHPLVGRETVLTHLQSHRNWLDG----V 76
Query: 89 VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V+TGGEP L L + G ++TNG
Sbjct: 77 VITGGEPTLVPGLDQLCRDCLDCGLPCKLDTNGMRP 112
>gi|225376083|ref|ZP_03753304.1| hypothetical protein ROSEINA2194_01720 [Roseburia inulinivorans DSM
16841]
gi|225212103|gb|EEG94457.1| hypothetical protein ROSEINA2194_01720 [Roseburia inulinivorans DSM
16841]
Length = 283
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 42/222 (18%), Positives = 64/222 (28%), Gaps = 44/222 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-------- 55
IF ++ G G VF GC L +CR+C
Sbjct: 30 IFDIQRYSIHDGPGVRT---IVF--LKGCAL-----------RCRWCCNPESQSFEVETM 73
Query: 56 ---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKR 110
G G V ++ +E + G L+GGE LQ + L +A
Sbjct: 74 TINGKPKVMGKDVTVAEVMKTVERDMPYYLQSGGGITLSGGECTLQPEFSLGLLRAAKDL 133
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP-ENYIGFDF- 168
G A+E+ + + D+K ++ K N+ EN +
Sbjct: 134 GISTAIESMAYAKYEVIETLLPYLDTYLMDIKHMNPEKHKEYTGHDNLRMLENALRVAHS 193
Query: 169 ---ERFSLQPMDGPFLEENTNL--AISYCFQNPKWRLSVQTH 205
E P+ F L + P R Q H
Sbjct: 194 GQTELIIRVPVIPGFNATEQELLDIAKFADTLPGVR---QIH 232
>gi|218561250|ref|YP_002394163.1| pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88]
gi|218691120|ref|YP_002399332.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
coli ED1a]
gi|237703757|ref|ZP_04534238.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
3_2_53FAA]
gi|218368019|emb|CAR05821.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
coli S88]
gi|218428684|emb|CAR09615.2| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
coli ED1a]
gi|226901669|gb|EEH87928.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
3_2_53FAA]
gi|323950274|gb|EGB46155.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli H252]
gi|323955614|gb|EGB51374.1| glycyl-radical enzyme activating protein family protein
[Escherichia coli H263]
Length = 305
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 52/163 (31%), Gaps = 55/163 (33%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-- 50
IF +L G G F F GC L + S + C C
Sbjct: 12 IFNIQRYSLHDGPGIRT-IP--F--FKGCPLSCKWCSNPESQRHSPELLFKKNDCIRCGK 66
Query: 51 --D--------TDFVGIQ--------------------GTKGGRYNVDQLADLIEEQWIT 80
D T KG R +V + +E++
Sbjct: 67 CIDACPQQALSTTNAWFINRDRCIQCGKCTEICPTRALEMKGKRMSVTAVMRELEKEENL 126
Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ G L+GGEPL Q + L++A +G+ A+ET+G
Sbjct: 127 YRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIETSGF 169
>gi|170754784|ref|YP_001782823.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum B1 str. Okra]
gi|169119996|gb|ACA43832.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum B1 str. Okra]
Length = 300
Score = 40.7 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 57/231 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ--------------------------- 46
G G VF F GC L + + +
Sbjct: 16 DGPGIRT---TVF--FKGCPLNCWWCHNPETQRREHEIMFFEERCTACGICVKRCPQKII 70
Query: 47 -------------CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCV 89
C FC T+F + G ++ I + + E+ G
Sbjct: 71 TMKNNIPMVDEGKCNFCGKCTNFCPNNAREYVGKDLTSQEIIKEIIKDEVFYEQSGGGVT 130
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGEP+L D +++ RG ++T+G + + DLK +
Sbjct: 131 FSGGEPMLHADFINGILEECKTRGIHTTIDTSGYVSWDKFEKVRDKVGLFLYDLKSMNNE 190
Query: 148 ELKLVFPQVN----VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
K N + E + + P+ D +N + I +
Sbjct: 191 IHKKYTGVENTIILENLELLSKYGHNIYLRIPIINDVNDNNKNIDETIKFI 241
>gi|26250358|ref|NP_756398.1| putative pyruvate formate-lyase 3 activating enzyme [Escherichia
coli CFT073]
gi|26110788|gb|AAN82972.1|AE016769_87 Putative pyruvate formate-lyase 3 activating enzyme [Escherichia
coli CFT073]
Length = 305
Score = 40.3 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 52/163 (31%), Gaps = 55/163 (33%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-- 50
IF +L G G F F GC L + S + C C
Sbjct: 12 IFNIQRYSLHDGPGIRT-IP--F--FKGCPLSCKWCSNPESQRHSPELLFKKNDCIRCGK 66
Query: 51 --D--------TDFVGIQ--------------------GTKGGRYNVDQLADLIEEQWIT 80
D T KG R +V + +E++
Sbjct: 67 CIDACPQQALSTTNAWFINRDRCIQCGKCTEICPTRALEMKGKRMSVTAVMRELEKEENL 126
Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ G L+GGEPL Q + L++A +G+ A+ET+G
Sbjct: 127 YRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTAIETSGF 169
>gi|283477062|emb|CAY72955.1| Coenzyme PQQ synthesis protein E [Erwinia pyrifoliae DSM 12163]
Length = 382
Score = 40.3 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q Q D+ ++ +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELTTAQWIDVFKQ---ARAMGAVQIGFS 65
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPL++ D+P LI++ GF + T+G
Sbjct: 66 GGEPLVRKDLPELIRSARDLGFYTNLITSG 95
>gi|118594757|ref|ZP_01552104.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylophilales
bacterium HTCC2181]
gi|118440535|gb|EAV47162.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylophilales
bacterium HTCC2181]
Length = 394
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R C FC + ++ + G + ++
Sbjct: 17 PLWLLAEITYRCPLHCAFCYNP-TDYDKHTQNELDTKSWLSVLNQARDLGAAQ---LGIS 72
Query: 92 GGEPLLQVDVPLI-QALNKRGFEIAVETNG 120
GGEPLL+ D+ +I + ++ G+ + T+G
Sbjct: 73 GGEPLLRDDIEIIVEEAHQLGYYSNLITSG 102
>gi|50085587|ref|YP_047097.1| pyrroloquinoline quinone biosynthesis protein PqqE [Acinetobacter
sp. ADP1]
gi|49531563|emb|CAG69275.1| coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein
III) [Acinetobacter sp. ADP1]
Length = 391
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 33 NLWSGREQD-RLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R QC +C D+ ++ + D+ D+ + G +
Sbjct: 17 PLWLLAELTYRCPLQCAYCSNPLDYAAVK----QELSTDEWKDVFRQARAMGSVQ---LG 69
Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
+GGEPLL Q LI+ ++ GF + T+G
Sbjct: 70 FSGGEPLLRQDLSELIKYAHELGFYTNLITSG 101
>gi|310765258|gb|ADP10208.1| Coenzyme PQQ synthesis protein E [Erwinia sp. Ejp617]
Length = 382
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q Q D+ ++ +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELTTAQWIDVFKQ---ARAMGAVQIGFS 65
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPL++ D+P LI++ GF + T+G
Sbjct: 66 GGEPLVRKDLPELIRSARDLGFYTNLITSG 95
>gi|171058974|ref|YP_001791323.1| molybdenum cofactor biosynthesis protein A [Leptothrix cholodnii
SP-6]
gi|170776419|gb|ACB34558.1| molybdenum cofactor biosynthesis protein A [Leptothrix cholodnii
SP-6]
Length = 381
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + + + I I E+ R LTGGEPLL+
Sbjct: 50 DRCNFRCSYCMPKEVFDKNHQFLPHAQLLSFEEITRLARIFVERGVRKIRLTGGEPLLRK 109
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + + + ++ + TNG+ G+ + VS A D +
Sbjct: 110 NIERLIEMLAVLRTPDGQALDLTLTTNGSLLARKARSLRDAGLQRVTVSLDAMDDAIFRR 169
Query: 146 GQELKLVFPQV 156
++ V
Sbjct: 170 MNDVDFPVADV 180
>gi|145592440|ref|YP_001154442.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145284208|gb|ABP51790.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 380
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
R + +C C ++ + G + D++++ E + TGGEPL++ D
Sbjct: 45 RCNLRCVHC---YIDAGPAEAGELTTKEALDVVDQM---AEVGVPLILFTGGEPLIRPDF 98
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ 126
+ + G ++ + TNGT+ P+
Sbjct: 99 FEIAEQARDVGIKLVLSTNGTLITPE 124
>gi|29348365|ref|NP_811868.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
thetaiotaomicron VPI-5482]
gi|253569265|ref|ZP_04846675.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
1_1_6]
gi|29340269|gb|AAO78062.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
thetaiotaomicron VPI-5482]
gi|251841284|gb|EES69365.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
1_1_6]
Length = 299
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 47/152 (30%), Gaps = 51/152 (33%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC------------ 50
G G R +F GCNL + + +C C
Sbjct: 15 DGPGI---RSTIF--LKGCNLRCKWCHNPETWSMKPQLQYIEDKCIHCFSCITVCEYEVL 69
Query: 51 --DTDFVGIQ-------------------GTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
D++ + I G + + I + I +K G
Sbjct: 70 FIDSNRLSIHRERCTDCGKCTERCTSGALSWIGKEVDSSDIIHEILQDLIYYQKSGGGIT 129
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
L+GGEPL Q D + ++Q + AVETN
Sbjct: 130 LSGGEPLQQKDFALDILQKCREHRIHTAVETN 161
>gi|150400184|ref|YP_001323951.1| molybdenum cofactor biosynthesis protein A [Methanococcus vannielii
SB]
gi|189028689|sp|A6US67|MOAA_METVS RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|150012887|gb|ABR55339.1| putative molybdenum cofactor biosynthesis protein A [Methanococcus
vannielii SB]
Length = 297
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 27/172 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G G + D++ ++ E R ++
Sbjct: 20 CNLK-----------CFYCH--REGRTEENGKLMSPDEIGKIVSASL---EFGVRKIKIS 63
Query: 92 GGEPLLQVDVPLIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+P I K +I++ TNG G++ + VS K
Sbjct: 64 GGEPLVRKDLPKIIQNIKNDQIKDISLTTNGILLEKCAEDLKKAGLNRVNVSLDTLNPKK 123
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K + + + ++G + + MD + + + YC +
Sbjct: 124 YKEITGGDVEKVKRGIEKAIFLGLTPLKVNFLAMDITLN--DLSEVMDYCKK 173
>gi|124027035|ref|YP_001012355.1| pyruvate-formate lyase-activating enzyme - protein [Hyperthermus
butylicus DSM 5456]
gi|123977729|gb|ABM80010.1| pyruvate-formate lyase-activating enzyme - conserved archaeal
protein [Hyperthermus butylicus DSM 5456]
Length = 254
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GRV+ GCNL +C FC + R+ D + E
Sbjct: 20 GRVSFTLWLCGCNL-----------RCPFCHNWKLAEMLPGTCRW---AKLDELVEALSG 65
Query: 81 GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGI 128
+ +TGGEPLLQ L++A +K G ++ TN T+
Sbjct: 66 AARLVDVLHVTGGEPLLQPGRLRGLLEASHKLGLGNSINTNCTLPENMEQ 115
>gi|307243155|ref|ZP_07525328.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306493416|gb|EFM65396.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 473
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGR-YNVDQLADLIEEQWITGEKEGR 86
GCN+ D SA +C+ C + + ++L D+IE+ G
Sbjct: 112 GCNVPWLILMDPTSACNLKCKGC-----WAAEYGHNQSLSFEELDDIIEQGKKLGIY--- 163
Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ + TGGEPL++ + R TNG
Sbjct: 164 FYMYTGGEPLMRKKDLIRLCDKHRDCYFLAFTNG 197
>gi|153854344|ref|ZP_01995643.1| hypothetical protein DORLON_01638 [Dorea longicatena DSM 13814]
gi|149753119|gb|EDM63050.1| hypothetical protein DORLON_01638 [Dorea longicatena DSM 13814]
Length = 368
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R+S + G +++ E+ G + +LT
Sbjct: 35 CNLNCDMCYVRMSRE----------EMEEVGRLRTMEEWTKTAEDMMRAG---TLFVLLT 81
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPLL L Q L + G I + TNG
Sbjct: 82 GGEPLLYPHFRELYQKLRELGMIITINTNG 111
>gi|295096474|emb|CBK85564.1| glycyl-radical enzyme activating protein family [Enterobacter
cloacae subsp. cloacae NCTC 9394]
Length = 299
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQAL 107
C T + + G + V+++ + ++ G L+GGEP + + +A
Sbjct: 92 CPTQALTVCGEEKQ---VEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAHALFKAS 148
Query: 108 NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
+++G AVET + + DLK K
Sbjct: 149 HEQGIHTAVETCLHVPWHYIEPSLPYVDLFLADLKHVDSDVFKQ 192
>gi|61214991|sp|Q6F9I9|PQQE_ACIAD RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
Length = 386
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 33 NLWSGREQD-RLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R QC +C D+ ++ + D+ D+ + G +
Sbjct: 12 PLWLLAELTYRCPLQCAYCSNPLDYAAVK----QELSTDEWKDVFRQARAMGSVQ---LG 64
Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
+GGEPLL Q LI+ ++ GF + T+G
Sbjct: 65 FSGGEPLLRQDLSELIKYAHELGFYTNLITSG 96
>gi|304314983|ref|YP_003850130.1| Fe-S oxidoreductase [Methanothermobacter marburgensis str. Marburg]
gi|302588442|gb|ADL58817.1| predicted Fe-S oxidoreductase [Methanothermobacter marburgensis
str. Marburg]
Length = 491
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 29 FSGCNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEE 76
GC L G + S +C C F +K +++ +++
Sbjct: 72 LKGCPLDCGLCPEHESHTVLGLIDVTNRCNLKCPICFANAAVSKYLYEPTYEEIREMLRN 131
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
GGEP ++ D+ L++ + GF + + TNG
Sbjct: 132 LRRNRPVPTPAIQYAGGEPTVRKDIVELVKLAREEGFTHVQIATNG 177
>gi|255067413|ref|ZP_05319268.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC
29256]
gi|255048383|gb|EET43847.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC
29256]
Length = 270
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 46/169 (27%), Gaps = 22/169 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRY 65
E + G G GC +C +C +
Sbjct: 32 VESCGAVDGPGLR-----YVLFLQGC-----------LMRCLYCHNRDTWDLHTEQAQEM 75
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V ++ + G TGGEPLLQ + A + +++NG
Sbjct: 76 TVPEVMKQVMSYRHYLRATGGGVTATGGEPLLQYEFVRDWFTACQEHDIHTCLDSNG--- 132
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
D I +L + +++ +V V N F +
Sbjct: 133 YALHYDSILDDLLDHTNLVMLDLKQIDPEIHKVLVGIPNTKTLKFAHYL 181
>gi|261414630|ref|YP_003248313.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371086|gb|ACX73831.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327444|gb|ADL26645.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 358
Score = 40.3 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL- 97
R + C C +D V + ++++ + + V+TGGEPL+
Sbjct: 34 CTLRCNLHCLHCGSDCV---KDAIPDMPREDFMAVLDKLTPHIDPKHFIVVITGGEPLMR 90
Query: 98 QVDVPLIQALNKRGFEIAVETNGTIEPPQ 126
Q + KRG+ + TNG P+
Sbjct: 91 PDLEECGQEIKKRGYPWGMVTNGLAMTPE 119
>gi|254446971|ref|ZP_05060438.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium
HTCC5015]
gi|198263110|gb|EDY87388.1| molybdenum cofactor biosynthesis protein A [gamma proteobacterium
HTCC5015]
Length = 329
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 36/192 (18%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCD----TDFVGIQGTKGGRYNVDQLADLIEE 76
GR + R S DR +CR+C +D+ +VD+ L+
Sbjct: 9 GRKVTYVRLS--------VTDRCDLRCRYCMPEGFSDYHVPDHW----LSVDEWLHLVGA 56
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLIQALNK--RGFE-IAVETNGTIEPPQGID---- 129
G ++ R +TGGEPLL+ ++P + G E IA+ TNG
Sbjct: 57 LARGGVQKVR---ITGGEPLLRRELPELIEGISQIEGIEDIALSTNGVRLKQHARRLKAA 113
Query: 130 -----WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE-E 183
I + G +L V ++ + E FE + + P E
Sbjct: 114 GLNRLNISLDTLDPERFAAITGGKLSKVLSGIDAALE----AGFEPIKINAVWMPDSRGE 169
Query: 184 NTNLAISYCFQN 195
+ + YC +
Sbjct: 170 DVEGLLGYCLER 181
>gi|300691998|ref|YP_003752993.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
PSI07]
gi|299079058|emb|CBJ51720.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
PSI07]
Length = 387
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 66 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERIARLFIEHGVEKIRLTGGEPLLRK 125
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 126 DIERLVEMLARLHTRDGKPLDLTLTTNGALLARKAQSLKDAGLTRVTVSLDAIDDATFRR 185
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 186 MNDVDFAVGEV 196
>gi|288573376|ref|ZP_06391733.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288569117|gb|EFC90674.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 312
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G D R +C FC G++GG + + +LI
Sbjct: 76 GCPYDCGLCPDHRQGTCTAVLEVTKRCDLRCPFC-----FADGSEGG--SDVPVNELIRR 128
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVPLI-QALNKRGF-EIAVETNG 120
++E L+GGEP ++ D+P I + GF I + +NG
Sbjct: 129 LETLSKREECVLQLSGGEPTVRDDLPYIVERARSMGFDFIQLNSNG 174
>gi|146297294|ref|YP_001181065.1| radical SAM domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410870|gb|ABP67874.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 347
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 29/171 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C +C D + +++ +I+ T +
Sbjct: 19 CNL-----------RCNYCSNDDNFYASSLS--LSIEDCKKVIDILHKTEVFR---INIE 62
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNGT------IEPPQGIDWIC--VSPKAGCDLK 142
GGEP L + +I LN++G+ + TNGT + + +S A
Sbjct: 63 GGEPFLRNDLLEIIGYLNEKGYIPKITTNGTLITRELAKELANYKILTLQISLDAPNKEC 122
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
+ + F ++ S E F L L+ N NL +
Sbjct: 123 YSNIRGSETYFDRILESIEYLKEFKIP-ICLS---MVLLKTNINLVEDFII 169
>gi|20089462|ref|NP_615537.1| heme d1 biosynthesis protein NirJ [Methanosarcina acetivorans C2A]
gi|19914367|gb|AAM04017.1| heme d1 biosynthesis protein NirJ [Methanosarcina acetivorans C2A]
Length = 349
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL CR G ++ I+E G+
Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPEGELTTEEAKHFIDEVVELGK---PIL 59
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
+L+GGEPL + DV + + G + + TNGT+ P+
Sbjct: 60 ILSGGEPLTRSDVFEIARYATDAGLRVVLATNGTLLTPE 98
>gi|21227828|ref|NP_633750.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
gi|20906239|gb|AAM31422.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
Length = 355
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 17/99 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL CR D+ I+E
Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPADELTTDEAKHFIDE---VAGLGKPIL 59
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
+L+GGEPL + DV + + G + + TNGT+ P+
Sbjct: 60 ILSGGEPLTRSDVFEIARYGTDAGLRVVLATNGTLLTPE 98
>gi|283488054|gb|ADB24720.1| NirJ [Methylomonas sp. 16a]
Length = 379
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+ C T G ++ ++++ + +L+
Sbjct: 36 CNLT-----------CKHCYT--TSADIDFPGELTTPEIYAVMDDL---KAFKVPVLILS 79
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPLL D+ P+ Q + GF +A+ +NGT+ I+ I
Sbjct: 80 GGEPLLHPDIFPISQRASDMGFYVALSSNGTLIDKNNIEQI 120
>gi|239996864|ref|ZP_04717388.1| pyrroloquinoline quinone biosynthesis protein PqqE [Alteromonas
macleodii ATCC 27126]
Length = 386
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E + C +C + + + ++ E E +
Sbjct: 20 PLWLLAEITYQCPLHCPYCSNPVNMEETFN--ELSTEHWERVLRE---AREVGAVQLGFS 74
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
GGEPLL+ D+ + A GF + T+G
Sbjct: 75 GGEPLLRKDLEHLVAYARALGFYTNLITSG 104
>gi|254418386|ref|ZP_05032110.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Brevundimonas sp. BAL3]
gi|196184563|gb|EDX79539.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Brevundimonas sp. BAL3]
Length = 215
Score = 40.3 bits (93), Expect = 0.17, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 19/102 (18%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VFC GC +C +C + + + + + + +
Sbjct: 23 ATVFC--QGCP-----------WRCGYCHNPHL-LPVRGAALLSWPATLEFLRRRRGLLD 68
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V +GGEP LQ V + + GF I + T G
Sbjct: 69 A----VVFSGGEPTLQKGLVEAVVQVRSLGFRIGLHTGGAYP 106
>gi|329896073|ref|ZP_08271309.1| putative Fe-S oxidoreductase [gamma proteobacterium IMCC3088]
gi|328922033|gb|EGG29397.1| putative Fe-S oxidoreductase [gamma proteobacterium IMCC3088]
Length = 254
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 31 GCNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL +C+FC D V T G Y Q+ D +
Sbjct: 52 GCNL-----------RCKFCFSD-KPVWKPATTGQFYTPQQVFDGLASNARKYGHSTISA 99
Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT 121
+ G Q + L+ + + F +ETNG
Sbjct: 100 SASEGTLGRQHLLELLDLVEQSEFVYILETNGM 132
>gi|260778821|ref|ZP_05887713.1| radical activating enzyme [Vibrio coralliilyticus ATCC BAA-450]
gi|260604985|gb|EEX31280.1| radical activating enzyme [Vibrio coralliilyticus ATCC BAA-450]
Length = 289
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 58/240 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWS-------------------------------GR 38
F + G G R+ +F GCN R
Sbjct: 14 FSCVDGPGN---RLVLF--LQGCNFNCINCHNPHTINYCNHCGDCVAGCPENALSFDTKR 68
Query: 39 EQDRLSAQCRFCD--TDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
+ ++C CD D + + R+ ++ ++ +LI EQ ++GGE
Sbjct: 69 KVVWDESKCTHCDQCVDLCTHRSSPKVRHYSIPEIIELINEQKWF----ISGVTISGGEA 124
Query: 96 LLQV--DVPLIQALNKR----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
+Q+ + L + + +++NG + + A DLK +
Sbjct: 125 TMQLPFIIELFKRIKSDKELCHLTCFIDSNGYLGESGWDKVLPYLDGAMIDLKSWQEETH 184
Query: 150 KLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLA--ISYCFQNPKWRL 200
+ + N + R P +E T +A I+ N RL
Sbjct: 185 HWLVGRDNHKVVHSIRYLADKQKLHELRLLHIPYRSDLDKEVTEVARLINTLPDNVNVRL 244
>gi|224437923|ref|ZP_03658865.1| radical SAM family protein [Helicobacter cinaedi CCUG 18818]
gi|313144366|ref|ZP_07806559.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG
18818]
gi|313129397|gb|EFR47014.1| pyruvate formate-lyase activating enzyme [Helicobacter cinaedi CCUG
18818]
Length = 363
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCN +C FC D++G + + +VD A I + G K +
Sbjct: 46 GGCN-----------HRCTFCGVDYMGYKSI---KIDVDVYARAIADMGRLGVKSVMFA- 90
Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGID-------WICVSPKAGCDL 141
GEP L D+P ++ G ++ + TN + + + WI VS AG
Sbjct: 91 -GEGEPFLHKDLPQMVALSKDSGVDVGITTNFVMANEKNLPTILKYASWIKVSLNAGDKE 149
Query: 142 KIKGGQELKLV 152
K
Sbjct: 150 SYARIHRTKEA 160
>gi|28557069|dbj|BAC57533.1| pyruvate formate-lyase activating enzyme [Clostridium limosum]
Length = 194
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
G Y L + +K G +GG+P++Q + ++ + ++T+
Sbjct: 1 GTEYTPGALLKKLIRFKPYFDKSGGGVTFSGGDPIMQPEFLIDCLKLCKENNIHTTIDTS 60
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
G + + D+K + K + Q ++
Sbjct: 61 GIGISKYYDQILKYTDLVLLDIKHIDEENFKKLTCQSMKQFYIFLDA 107
>gi|282936076|gb|ADB04295.1| putative naphthyl-2-methyl-succinate synthase activating enzyme
[bacterium enrichment culture clone N47]
Length = 338
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 28 RFSGC--NLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
R C +L + ++C C D +D+ I+ +
Sbjct: 85 RTEKCTEDLRDVKPPIIDRSKCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144
Query: 82 EKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEP 124
G L+GGEPLL L + + AV+T+G ++
Sbjct: 145 RSSGGGMTLSGGEPLLHPKTALALLRLAKENSIHTAVDTSGFLDW 189
>gi|24373955|ref|NP_717998.1| radical activating enzyme [Shewanella oneidensis MR-1]
gi|24348393|gb|AAN55442.1|AE015681_6 radical activating enzyme [Shewanella oneidensis MR-1]
Length = 286
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 56/225 (24%), Gaps = 53/225 (23%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+ +F GCN +
Sbjct: 8 FSCVDGPGS---RLVLF--LQGCNYQCKNCHNPHTIGLCDGCGDCIATCPDKALTLINAN 62
Query: 42 ------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
+C CDT + + +++ ++GGE
Sbjct: 63 NKHQTHWDKDRCSQCDTCLAVCPQQANPKVTRYTVEEILAILHHQRHF-INGITVSGGEA 121
Query: 96 --LLQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
L + L +A+ ++TNG++ + A DLK
Sbjct: 122 SLQLPFIIELFKAIKASTSLSQLTCMLDTNGSLSLTGWHKLLPFLDGAMVDLKAWQRDTH 181
Query: 150 KLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNL 187
+ + + N + R P F +E L
Sbjct: 182 RYITGRDNHAVFKSIELLAQQQKLYEVRLLHIPGITDFEQEIDAL 226
>gi|256750649|ref|ZP_05491535.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
gi|256750489|gb|EEU63507.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
Length = 333
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 18/125 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +FC + Q G ++ QL + Q
Sbjct: 87 GCNLKC-----------KFCQNWEIAHQKWVGDYISLQQLIAAAKRQRDN-----IGIAF 130
Query: 91 TGGEPLLQVDVPLIQAL--NKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EPL+ + + + K G + + TNG I + D+K
Sbjct: 131 TYNEPLIWYEYVHDRLIEAKKEGLKTVLVTNGYINLEPLKKILPYVDAMNIDVKAFTEDF 190
Query: 149 LKLVF 153
K +
Sbjct: 191 YKKIV 195
>gi|18976674|ref|NP_578031.1| co-factor modifying protein [Pyrococcus furiosus DSM 3638]
gi|18892249|gb|AAL80426.1| co-factor modifying protein [Pyrococcus furiosus DSM 3638]
Length = 284
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFC-------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
GCN R + C D++ + K V+++ ++E++ +
Sbjct: 66 GCNWRCKYCVWREVTRWSLCLPEKTRQQLDYLW-KERKVRYLTVEEVERILEKERV---- 120
Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDW---ICVSPKAGC 139
+ L GGEP L PL++AL KRG ++ + TNG + +D I S KA
Sbjct: 121 --KIAFLGGGEPTLDPELKPLMKALAKRGIKVWLVTNGEGLDDEIVDIAYGITFSIKALD 178
Query: 140 DLKIKG 145
+ K
Sbjct: 179 EELHKR 184
>gi|109898477|ref|YP_661732.1| molybdenum cofactor biosynthesis protein A [Pseudoalteromonas
atlantica T6c]
gi|109700758|gb|ABG40678.1| GTP cyclohydrolase subunit MoaA [Pseudoalteromonas atlantica T6c]
Length = 322
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 18/103 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN CDTD + L ++ + +T
Sbjct: 21 CNFSCEYCLPDGYQ----CDTD-----------RDFLSLIEITRIAGAFAKLGTSKIRIT 65
Query: 92 GGEPLLQVDVPLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131
GGEP L+ D+P ++A+ TNG P W+
Sbjct: 66 GGEPSLRKDLPDAIRACANTPGIKQVAITTNGYKLPDHIDSWV 108
>gi|330835444|ref|YP_004410172.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
gi|329567583|gb|AEB95688.1| radical SAM domain-containing protein [Metallosphaera cuprina Ar-4]
Length = 369
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C C + + + + +++ + ++ +L+
Sbjct: 39 CNL-----------RCLHC---YSSSGTQQFYDLPLSVWIEAVKQ---ASDMGVKHILLS 81
Query: 92 GGEPL-LQVDVPLIQALNKRGFEIAVETNGTI 122
GGEPL + + + +RG + + TNGT+
Sbjct: 82 GGEPLARRDLSLIAREAWERGIRVELSTNGTM 113
>gi|308272797|emb|CBX29401.1| hypothetical protein N47_J03820 [uncultured Desulfobacterium sp.]
Length = 338
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 28 RFSGC--NLWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
R C +L + ++C C D +D+ I+ +
Sbjct: 85 RTEKCTEDLRDVKPPIIDRSKCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144
Query: 82 EKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEP 124
G L+GGEPLL L + + AV+T+G ++
Sbjct: 145 RSSGGGMTLSGGEPLLHPKTALALLRLAKENSIHTAVDTSGFLDW 189
>gi|215489691|ref|YP_002332122.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli O127:H6 str. E2348/69]
gi|215267763|emb|CAS12225.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli O127:H6 str. E2348/69]
Length = 287
Score = 40.3 bits (93), Expect = 0.18, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLTVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|229012776|ref|ZP_04169945.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus mycoides DSM 2048]
gi|228748457|gb|EEL98313.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus mycoides DSM 2048]
Length = 147
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCIGCHNPQSW-NVCNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
IE+ +T +GG+P Q
Sbjct: 52 EIEKNSLTD------VTFSGGDPFFQ 71
>gi|268324698|emb|CBH38286.1| conserved hypothetical protein, radical SAM superfamily [uncultured
archaeon]
Length = 271
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 16/102 (15%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ V+ SGCN C F + G + V+QL L+++
Sbjct: 14 KPRVWITLSGCNFKCK--------GC------FSLARNPIGEQMTVEQLISLVKDSASGC 59
Query: 82 EKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT 121
V+TGGEP L + L+ L + I ++TNG
Sbjct: 60 YSALEEAVITGGEPTLNRHYLIDLVSQLKEFVGWIVLDTNGY 101
>gi|218886909|ref|YP_002436230.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757863|gb|ACL08762.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 238
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
G + GCN +C C + + IE
Sbjct: 21 GYSSCVIFLGGCN-----------MRCPTCHNWQLAWHADTLPLLS----RAAIESYIEA 65
Query: 81 GEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V+TGGE + +++ L + G + V++NG
Sbjct: 66 RRHWLDGVVVTGGEATMVDGFADMLRGLRRFGLPVKVDSNGLRP 109
>gi|237710986|ref|ZP_04541467.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
gi|265750576|ref|ZP_06086639.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229454830|gb|EEO60551.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
gi|263237472|gb|EEZ22922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 367
Score = 40.3 bits (93), Expect = 0.19, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 47 CRF-CDTDFVGIQGTK----GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
C F CD ++ ++ ++ GG ++++ + ++ G + +LTGGEPLL D
Sbjct: 35 CNFRCDMCYIRMEKSQAEKRGGLRSIEEWLHIADQLQEIG---TLFILLTGGEPLLYPDF 91
Query: 101 VPLIQALNKRGFEIAVETN 119
L L ++GF + + TN
Sbjct: 92 KELYIRLKEKGFILTINTN 110
>gi|302334990|ref|YP_003800197.1| Radical SAM domain protein [Olsenella uli DSM 7084]
gi|301318830|gb|ADK67317.1| Radical SAM domain protein [Olsenella uli DSM 7084]
Length = 297
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 47/214 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-AQCRFCDTDFVGIQGTKGGRYNVD 68
F + G G +VF GCN+ + + A C C TD + G G ++
Sbjct: 31 FSLVDGPGSRC---SVF--LQGCNIRCAYCHNPETQATCINC-TD--CVAGCPSGALSLR 82
Query: 69 QLADLIEEQWITGEKEGRYCV-------------------------------LTGGEPLL 97
+ + +E G + + +GGE +L
Sbjct: 83 EGRVVWDEATCIGCDQCIHVCGHRASPKVRLLDAGEVFGIVRGYVPFIRGVTTSGGECML 142
Query: 98 QV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
L + G E ++TNGTI+ D + V+ D+K + +
Sbjct: 143 HPRFLKGLFERCRGIGLETLIDTNGTIDFEGHEDLLAVANGVMLDVKAWDDGLFRRLTGS 202
Query: 156 VNVSPENYIGF-----DFERFSLQPMDGPFLEEN 184
N + + F E + +DG E+
Sbjct: 203 GNATVLKNLAFLGERDKLEEIRVVVVDGWNDPED 236
>gi|188535004|ref|YP_001908801.1| pyrroloquinoline quinone biosynthesis protein PqqE [Erwinia
tasmaniensis Et1/99]
gi|226704990|sp|B2VL10|PQQE_ERWT9 RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|188030046|emb|CAO97932.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone
biosynthesis protein E) [Erwinia tasmaniensis Et1/99]
Length = 382
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q + Q ++ ++ +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAQQE--KELSTAQWIEVFKQ---ARAMGAVQIGFS 65
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPL++ D+P LI++ + GF + T+G
Sbjct: 66 GGEPLVRKDLPELIRSARELGFYTNLITSG 95
>gi|157163827|ref|YP_001461145.1| radical SAM domain-containing protein [Escherichia coli HS]
gi|157069507|gb|ABV08762.1| radical SAM domain protein [Escherichia coli HS]
Length = 287
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 69/226 (30%), Gaps = 55/226 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAI 189
+ + N + I E R + P +L+ LA+
Sbjct: 185 QITGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQHIEELAV 230
>gi|296242925|ref|YP_003650412.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
11486]
gi|296095509|gb|ADG91460.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
Length = 380
Score = 40.3 bits (93), Expect = 0.20, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 23/141 (16%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
AVF F+GCNL Q+ V G K + +D L +
Sbjct: 142 AVF--FAGCNLDCLFCQNWEHK-------KMVAGPGWKRYVFTIDGL------LRAGLDG 186
Query: 84 EGRYCVLTGGEP---LLQVDVPLIQALNKRG-----FEIAVETNGTIEPPQGIDWICVSP 135
+ GG+P + + L + G + ETNG + P + + +S
Sbjct: 187 KVTCVCFFGGDPGPHTVFALNFSRRLLKEAGERGVVKRVCWETNGLVNPALFKEMVRLSL 246
Query: 136 KAGCDLKIKGGQELKLVFPQV 156
++G +K+ ++ +
Sbjct: 247 ESGGIVKVDWKAWSPWIYEAL 267
>gi|300704632|ref|YP_003746235.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
CFBP2957]
gi|299072296|emb|CBJ43629.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
CFBP2957]
Length = 373
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERMVRLFIEHGVEKIRLTGGEPLLRK 111
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 112 DIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDDATFRR 171
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 172 MNDVDFAVGEV 182
>gi|207743614|ref|YP_002260006.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
IPO1609]
gi|206595013|emb|CAQ61940.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
IPO1609]
Length = 391
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 70 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERMVRLFIEHGVEKIRLTGGEPLLRK 129
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 130 DIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDDATFRR 189
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 190 MNDVDFAVGEV 200
>gi|207725239|ref|YP_002255635.1| molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
MolK2]
gi|206590473|emb|CAQ37435.1| molybdenum cofactor biosynthesis protein a [Ralstonia solanacearum
MolK2]
Length = 391
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 70 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERMVRLFIEHGVEKIRLTGGEPLLRK 129
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 130 DIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDDATFRR 189
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 190 MNDVDFAVGEV 200
>gi|187927999|ref|YP_001898486.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
12J]
gi|187724889|gb|ACD26054.1| molybdenum cofactor biosynthesis protein A [Ralstonia pickettii
12J]
Length = 373
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERMARLFIEHGVEKIRLTGGEPLLRK 111
Query: 100 DVP-----LIQALNKRG--FEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ L + G ++ + TNG G+ + VS D +
Sbjct: 112 DIERLVEMLARLTTAEGKPLDLTLTTNGALLARKAQSLKDAGLTRVTVSLDGIDDATFRR 171
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 172 MNDVDFAVGEV 182
>gi|83748466|ref|ZP_00945488.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
UW551]
gi|83724877|gb|EAP72033.1| Molybdenum cofactor biosynthesis protein A [Ralstonia solanacearum
UW551]
Length = 373
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + R++ + IE + E LTGGEPLL+
Sbjct: 52 DRCNFRCVYCMPKDVFDKDYRFLRHSELLSFEEIERMVRLFIEHGVEKIRLTGGEPLLRK 111
Query: 100 DVPLIQALNKR-------GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
D+ + + R ++ + TNG G+ + VS A D +
Sbjct: 112 DIERLVEMLARLTTRDGKPLDLTLTTNGALLARKAQSLKDAGLKRVTVSLDAIDDATFRR 171
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 172 MNDVDFAVGEV 182
>gi|317493773|ref|ZP_07952190.1| radical SAM superfamily protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918100|gb|EFV39442.1| radical SAM superfamily protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 287
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 63/239 (26%), Gaps = 58/239 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLAIF--LQGCNLRCKNCHNPYTIGMCDNCGDCVTTCPHQALSLVSGK 68
Query: 47 -------CRFCDTDF---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C+ CDT Y+V+ L ++ ++GGE
Sbjct: 69 VQWDADVCQQCDTCLQTCTQHSSPMTQSYSVNALLIQVKRNAPF----INGVTISGGEAT 124
Query: 97 LQV--DVPLIQALNK----RGFEIAVETNGTIEPPQGI---DWI---CVSPKAGCDLKIK 144
LQ+ A+ V++NG + WI + KA + +
Sbjct: 125 LQLPFLCDFFAAIKSSQELAHLTCLVDSNGDLSETGWQKLLPWIDGAMLDLKAWDNECHR 184
Query: 145 GGQELKLV-FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ--NPKWRL 200
Q + R + P L+ LA + + RL
Sbjct: 185 ALTGRDNYRIKQSILWLAKRGKLSELRLLVIPEHSDHLQHADELA-EFILSLGDVPVRL 242
>gi|296103236|ref|YP_003613382.1| glycyl-radical activating family protein [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057695|gb|ADF62433.1| glycyl-radical activating family protein [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 299
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G V+++ + ++ G L+GGEP + D + L +A +++G AVET
Sbjct: 101 GEERQVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPDLALALFKASHEQGIHTAVETC 160
Query: 120 GTIEPP 125
+
Sbjct: 161 LHVPWH 166
>gi|91201025|emb|CAJ74083.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 471
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADL 73
GE G++A R N +R S +C FC T + ++G + ++
Sbjct: 270 GEPELEGKIAYAIR----NSLYINLTNRCSMECSFCMRTTYPFVKGHNLHLKREPTIEEV 325
Query: 74 IEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
++ G + GEP L+V + L +G I ++TNG + G
Sbjct: 326 LQSIGDPGRYDEVVFC-GYGEPTERLEVLKAVAADLKSKGKRIRLDTNGHGDIINGRSI- 383
Query: 132 CVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
ELK + + +S + F E+ I +
Sbjct: 384 --------------ANELKGLIDTICISLNAETAEKYAAIC----KPVFGEKAYFALIQF 425
Query: 192 CFQN----PKWRLSV 202
P ++SV
Sbjct: 426 VKDAKKVIPNVQVSV 440
>gi|20808359|ref|NP_623530.1| pyruvate-formate lyase-activating enzyme [Thermoanaerobacter
tengcongensis MB4]
gi|20516968|gb|AAM25134.1| Pyruvate-formate lyase-activating enzyme [Thermoanaerobacter
tengcongensis MB4]
Length = 328
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +FC + Q +G + L + Q
Sbjct: 82 GCNLKC-----------KFCQNWEIAHQKWEGDFISPQDLILHAKRQRHN-----IGIAF 125
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EPL+ + +Q K+G + + TNG I P + + D+K
Sbjct: 126 TYNEPLIWYEYVYEGLQEAKKQGLKTVLVTNGYINPEPLKNLLPYVDAMNIDVKAFTEDF 185
Query: 149 LKLVF 153
K +
Sbjct: 186 YKKIV 190
>gi|255526789|ref|ZP_05393689.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
gi|296187941|ref|ZP_06856333.1| radical SAM domain protein [Clostridium carboxidivorans P7]
gi|255509517|gb|EET85857.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
gi|296047067|gb|EFG86509.1| radical SAM domain protein [Clostridium carboxidivorans P7]
Length = 457
Score = 39.9 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 31/195 (15%)
Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G + R + +C+FC F K ++++ + E
Sbjct: 75 GCPFDCGLCSEHRQHTCTALIEVTERCNLKCKFC---FADSYRDKKKDVPIEKIRFMYER 131
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICV- 133
++GGEP L+ D+P +I+ GF+ I V TNG +
Sbjct: 132 ILEASGACN--IQISGGEPTLRDDLPQIIELGINLGFKFIQVNTNGIRIAQDEDYVKKLK 189
Query: 134 -SPKAGCDLKIKGGQEL-------KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
S + L+ G L + + EN +D + + +N
Sbjct: 190 ESGLSSIFLQFDGTNNLIYKKLRGSELLDIKIKAIENCKKYDIGVVLVPTIVPEVNVDNI 249
Query: 186 NLAISYCFQN-PKWR 199
I++ N P R
Sbjct: 250 GEIINFALNNIPTVR 264
>gi|156936800|ref|YP_001434596.1| radical SAM domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156565784|gb|ABU81189.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
Length = 245
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 31/144 (21%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR----YNVDQLADLIEEQWITGEKEGR 86
GCNL +C FC + R Y+ ++A+ + I E+
Sbjct: 42 GCNL-----------RCAFC---WSWKATRGIPRTAKFYSPSEVAEKLIR--IARERGFE 85
Query: 87 YCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT---------IEPPQGIDWICVSP 135
++GGEP L + +I +N+ G +ETNG + + ++ VS
Sbjct: 86 LARVSGGEPTLCPTHLLKVIDLVNEAGLTFVLETNGILIGYDKSLAKDLVKRKVFVRVSI 145
Query: 136 KAGCDLKIKGGQELKLVFPQVNVS 159
KA K ++ +
Sbjct: 146 KAPTPEAFSRVTGAKKEAFELQIR 169
>gi|194333737|ref|YP_002015597.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Prosthecochloris aestuarii DSM 271]
gi|194311555|gb|ACF45950.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Prosthecochloris aestuarii DSM 271]
Length = 251
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL +C +C + + + R ++ + I +
Sbjct: 43 TAGCNL-----------RCIYCHNPELVL-PDRIQRLGAEE-RETIVTWLVRNRMLLDAV 89
Query: 89 VLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
V+TGGEPLL +P L+ + + G + ++TNGT
Sbjct: 90 VVTGGEPLLHPALPGLLGWIRELGLAVKLDTNGTFP 125
>gi|308062089|gb|ADO03977.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
Cuz20]
Length = 321
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
I L+ E+A+ TNG + D S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK V S + + M +E L + Y
Sbjct: 135 DALKNTLEGVEESLKVGLKLKLNMVV---MKSVNDDEILEL-LEYAKNR 179
>gi|309774871|ref|ZP_07669892.1| glutamate 5-kinase [Erysipelotrichaceae bacterium 3_1_53]
gi|308917429|gb|EFP63148.1| glutamate 5-kinase [Erysipelotrichaceae bacterium 3_1_53]
Length = 274
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN +C FC + + + Q ++++ +
Sbjct: 69 GCN-----------MRCPFCQNHEISMHS-DAPFVKLMQPQEIVDFALQLKPQGNIGIAY 116
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL+ + + + ++ G + + TNG I+ + + + D+K
Sbjct: 117 TYNEPLINFEFVLDTCRLAHRYGLKNVIVTNGCIKEAKLSELLPYVDAMNIDIKAFRED 175
>gi|296242049|ref|YP_003649536.1| radical SAM domain-containing protein [Thermosphaera aggregans DSM
11486]
gi|296094633|gb|ADG90584.1| Radical SAM domain protein [Thermosphaera aggregans DSM 11486]
Length = 274
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C FC + T G + + I + E Y L
Sbjct: 63 GCNL-----------RCGFCWSWRFSHVSTGGWFESAESAFQKIYSIAARNKYE--YVRL 109
Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNG 120
+GGEP L + +IQ ++ F +ETNG
Sbjct: 110 SGGEPTLSKNHLLKIIQLFSETSFTFILETNG 141
>gi|294677721|ref|YP_003578336.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
SB 1003]
gi|294476541|gb|ADE85929.1| [pyruvate formate-lyase]-activating enzyme-1 [Rhodobacter
capsulatus SB 1003]
Length = 305
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 50/167 (29%), Gaps = 51/167 (30%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-----------QCRFC-------- 50
++ G G VF GC L + S C C
Sbjct: 18 YSIHDGPGVRT---IVF--LKGCPLACRWCSNPESQSTEPDLFFRASACIGCGKCIPVCP 72
Query: 51 ---------------------D-TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGR 86
D T + K G R +V ++ + + I + G
Sbjct: 73 VGALSRDNPGFVDRAKCIRCGDCTKVCPTEALKRAGRRMSVAEVMQELRKDAIHYRRSGG 132
Query: 87 YCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDWI 131
L+GGEPLLQ A +++G+ A+ET G + I
Sbjct: 133 GVTLSGGEPLLQAAFAKQLLMACHEQGWNTAMETTGCAPREVIREVI 179
>gi|20094522|ref|NP_614369.1| fused ferredoxin domain/pyruvate-formate lyase-activating protein
[Methanopyrus kandleri AV19]
gi|19887637|gb|AAM02299.1| Ferredoxin domain fused to pyruvate-formate lyase-activating enzyme
[Methanopyrus kandleri AV19]
Length = 390
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL C + G R ++ A L+ E +
Sbjct: 164 GCNLRC-----------PQCQNHSIAFGAAMGARMRPEEAARLL--VGTAREYGVNRVAI 210
Query: 91 TGGEPLLQV--DVPLIQALNKRG---FEIAVETNGTIEPPQ 126
+GGEP L V ++ + G + V+TNGT+ P
Sbjct: 211 SGGEPTLNREFLVEFVRKCREYGGPDLRVHVDTNGTVLSPD 251
>gi|302878858|ref|YP_003847422.1| (Formate-C-acetyltransferase)-activating enzyme [Gallionella
capsiferriformans ES-2]
gi|302581647|gb|ADL55658.1| (Formate-C-acetyltransferase)-activating enzyme [Gallionella
capsiferriformans ES-2]
Length = 249
Score = 39.9 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF---------VGIQGTKGGR 64
G G VF F GC L +C +C G+
Sbjct: 18 DGPGIRT---TVF--FQGCPL-----------RCLWCQNPEGQARSSRESASYDGS--RW 59
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGTI 122
Y +++L + + G ++GGEP + + +L + G + A+ET G
Sbjct: 60 YTLEELRYRVLIDRPFFDSTGGGVTVSGGEPAHQMPFVGAFLSSLQREGVDTAIETCGFF 119
Query: 123 EPP 125
Sbjct: 120 NYM 122
>gi|330427842|gb|AEC19176.1| radical SAM domain-containing protein [Pusillimonas sp. T7-7]
Length = 250
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 19/100 (19%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
+F GC +C +C + + ++ AD +
Sbjct: 43 IFV--QGCP-----------WRCGYCHNPHL----QERTPHSPIPWADAL-ALLQRRRGL 84
Query: 85 GRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
V +GGEP + I GF+I + + GT
Sbjct: 85 VDAVVFSGGEPTMDPGLADAIGQARALGFKIGLHSGGTHP 124
>gi|322378988|ref|ZP_08053392.1| molybdenum cofactor biosynthesis protein A (MoaA) [Helicobacter
suis HS1]
gi|321148592|gb|EFX43088.1| molybdenum cofactor biosynthesis protein A (MoaA) [Helicobacter
suis HS1]
Length = 350
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 19/159 (11%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
+ + +C++C R + L ++E + ++ R +TGGEPL++ D+
Sbjct: 48 QCNFRCQYC---MPTTPMDFFDREELLPLDKMLEFLKVAIDEGIRKIRITGGEPLIRKDL 104
Query: 102 P-LIQALNKRGFEIA--VETNGT-------IEPPQGIDWICV---SPKAGCDLKIKGGQE 148
I ++ +++ + TNG G++ + V S KA KI
Sbjct: 105 ASFIAKIHAYNPQVSLGLTTNGFLLKAHARDLKEAGLERVNVSLDSLKAERVAKISQKDG 164
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
LK V +NV+ +G F LQ G +E L
Sbjct: 165 LKAVLEGINVALRMGLGLKFNMVVLQ---GINDDEIIEL 200
>gi|313902877|ref|ZP_07836273.1| Radical SAM domain protein [Thermaerobacter subterraneus DSM 13965]
gi|313466812|gb|EFR62330.1| Radical SAM domain protein [Thermaerobacter subterraneus DSM 13965]
Length = 479
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + +C FC DF + + + + ++ + +E G + G EP L +++
Sbjct: 133 RCNQRCSFCFLDFGLMAQQEKRKLSCEEWLAITDELIHAG---VNVINIGGMEPFLDIEL 189
Query: 102 PLIQALN--KRGFEIAVETNGTIEPPQG--------IDWICVSPKAGCDLKIKGGQELKL 151
+ + G + V TNG+I ++ VS +A +
Sbjct: 190 TISILEKAYENGCIVGVITNGSISLSSEQMERLAAMQCYVGVSLEAHVPTVHNDLVNARG 249
Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR-LSVQ 203
F Q + E I +Q + + + + + LS+Q
Sbjct: 250 AFQQCVANIEKMIQHGVP-VGIQTVALRSNMAYLEQFVEWLEE-LGVKSLSIQ 300
>gi|225017329|ref|ZP_03706521.1| hypothetical protein CLOSTMETH_01255 [Clostridium methylpentosum
DSM 5476]
gi|224949946|gb|EEG31155.1| hypothetical protein CLOSTMETH_01255 [Clostridium methylpentosum
DSM 5476]
Length = 263
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 29/124 (23%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-----------GTKG 62
G G +F GC L +CR+C T G
Sbjct: 22 DGPGIRT---IIF--LKGCPL-----------RCRWCCNPESQHHQVEEMVVDGKPKTMG 65
Query: 63 GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
V ++ + + + G L+GGE L Q + +++A + G A+ET
Sbjct: 66 RDVTVAEVLSEVLKDASYYRRSGGGVTLSGGECLFQPEFAAAILRACQEHGVNTAIETTA 125
Query: 121 TIEP 124
Sbjct: 126 YTSW 129
>gi|320160976|ref|YP_004174200.1| hypothetical protein ANT_15720 [Anaerolinea thermophila UNI-1]
gi|319994829|dbj|BAJ63600.1| hypothetical protein ANT_15720 [Anaerolinea thermophila UNI-1]
Length = 471
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + QC C ++ +I++ W G + V TGGEP L+ D+
Sbjct: 146 RCNNQCSHCYNAR----SRNFPELPTEKWKTIIQKLWDIG---IPHLVFTGGEPTLRHDL 198
Query: 102 P-LIQALNKRGFEIAVETNGTI 122
P LI+ K G + TNGT
Sbjct: 199 PDLIEFAEKIGMITGLNTNGTC 220
>gi|262194648|ref|YP_003265857.1| radical SAM protein [Haliangium ochraceum DSM 14365]
gi|262077995|gb|ACY13964.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
Length = 370
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
R +G R +C C T G + ++++ I + RY
Sbjct: 34 RLAG---LYVAITRRCPLRCEHCSTRSSPQVGERELGPHLERFFASIGKAGTAAHPPPRY 90
Query: 88 CVLTGGEPLLQVDVPLIQALNKRGF--EIAVETNGTI 122
TGGEPLL ++ A+ R F + ++G
Sbjct: 91 VYFTGGEPLLHPELVTKLAIRARSFGARTHLISSGFF 127
>gi|167748650|ref|ZP_02420777.1| hypothetical protein ANACAC_03424 [Anaerostipes caccae DSM 14662]
gi|317470908|ref|ZP_07930287.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
3_2_56FAA]
gi|167651964|gb|EDR96093.1| hypothetical protein ANACAC_03424 [Anaerostipes caccae DSM 14662]
gi|316901559|gb|EFV23494.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
3_2_56FAA]
Length = 297
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 20/121 (16%)
Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPL 103
C + G G +++ + + L+GGEP++Q D + L
Sbjct: 88 GCPY------GALELVGEEMTAEEVLEEVCIDQAFFRTSKGGITLSGGEPMIQADFVLEL 141
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENY 163
++ + G A+ET+G S + + + E + + +
Sbjct: 142 LKKSKEMGLSTAIETSGY------------SDQRNYERILPYADEFLWDYKETDNVKHRE 189
Query: 164 I 164
+
Sbjct: 190 L 190
>gi|121592520|ref|YP_984416.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidovorax sp. JS42]
gi|120604600|gb|ABM40340.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidovorax sp. JS42]
Length = 228
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 21 GRVA--VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
GR+A VFC GC G +C G +E+
Sbjct: 28 GRLAAVVFC--QGCPWRCG-----------YCHNA-----GLLDAAAPAPHRWGEVEQLL 69
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIE 123
T V +GGEP LQ +P + + GF + T G
Sbjct: 70 HTRRGLLDGVVFSGGEPTLQAALPDALARVRALGFATGLHTAGMYP 115
>gi|261364596|ref|ZP_05977479.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC
25996]
gi|288567181|gb|EFC88741.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC
25996]
Length = 270
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 46/169 (27%), Gaps = 22/169 (13%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRY 65
E + G G GC +C +C +
Sbjct: 32 VESCGAVDGPGLR-----YVLFLQGC-----------LMRCLYCHNRDTWDLHTEQAQEM 75
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
V ++ + G TGGEPLLQ + A + +++NG
Sbjct: 76 TVPEVMKQVMSYRHYLRATGGGVTATGGEPLLQYEFVRDWFTACYEHDIHTCLDSNG--- 132
Query: 124 PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFS 172
D I +L + +++ +V V N F +
Sbjct: 133 YALHYDSILDDLLDHTNLVMLDLKQIDPEIHKVLVGIPNTKTLKFAHYL 181
>gi|117626444|ref|YP_859767.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
APEC O1]
gi|115515568|gb|ABJ03643.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
APEC O1]
Length = 305
Score = 39.9 bits (92), Expect = 0.22, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 52/163 (31%), Gaps = 55/163 (33%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-- 50
IF +L G G F F GC L + S + C C
Sbjct: 12 IFNIQRYSLHDGPGIRT-IP--F--FKGCPLSCKWCSNPESQRHSPELLFKKNDCIRCGK 66
Query: 51 --D--------TDFVGIQ--------------------GTKGGRYNVDQLADLIEEQWIT 80
D T KG R +V + +E++
Sbjct: 67 CIDACPQQALSTTNAWFINRDRCIQCGKCTEICPTRALEMKGKRMSVTAVMRELEKEENL 126
Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ G L+GGEPL Q + L++A +G+ A+ET+G
Sbjct: 127 YRRSGGGITLSGGEPLAQPEFARELLKASKAKGWHTAIETSGF 169
>gi|322380493|ref|ZP_08054683.1| molybdenum cofactor biosynthesis protein A [Helicobacter suis HS5]
gi|321147073|gb|EFX41783.1| molybdenum cofactor biosynthesis protein A [Helicobacter suis HS5]
Length = 350
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 19/159 (11%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
+ + +C++C R + L ++E + ++ R +TGGEPL++ D+
Sbjct: 48 QCNFRCQYC---MPTTPMDFFDREELLPLDKMLEFLKVAIDEGIRKIRITGGEPLIRKDL 104
Query: 102 P-LIQALNKRGFEIA--VETNGT-------IEPPQGIDWICV---SPKAGCDLKIKGGQE 148
I ++ +++ + TNG G++ + V S KA KI
Sbjct: 105 ASFIAKIHAYNPQVSLGLTTNGFLLKAHARDLKEAGLERVNVSLDSLKAERVAKISQKDG 164
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
LK V +N + +G F LQ G +E L
Sbjct: 165 LKAVLEGINAALRMGLGLKFNMVVLQ---GINDDEIIEL 200
>gi|269119695|ref|YP_003307872.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
gi|268613573|gb|ACZ07941.1| glycyl-radical enzyme activating protein family [Sebaldella
termitidis ATCC 33386]
Length = 298
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 50/265 (18%), Positives = 75/265 (28%), Gaps = 101/265 (38%)
Query: 1 MKLYSIKEIFLTLQGE--GGHAG---RVAVFCRFSGCNLWSGREQDRLSA---------- 45
MK Y + EI E G H G R VF GC L + +
Sbjct: 1 MKTY-VCEI------ERLGIHDGPGIRTVVF--LKGCPLKCIWCSNPETQLSLNQIYYNE 51
Query: 46 ----QCRFC-----DTDFVGIQGTK------------------------GGRYNVDQLAD 72
+CR C + K + D++ D
Sbjct: 52 KKCIKCRRCVEASENNSVEFDDEWKFFPERCSDVNKIIQSCPVGALKNTSEKMTADEVFD 111
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
+ + + + ++GGE L+ D LI+ + + A+ET+G
Sbjct: 112 EVMKDYPYYKNSNGGLTVSGGEVLMNSDFAYELIKKVKEEYISTAIETSGFGNYSGLEKV 171
Query: 131 ICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
V+ +YI FD + MD EE T ++
Sbjct: 172 AKVT---------------------------DYILFDIKH-----MDEKIHEEITGVSNK 199
Query: 191 YCFQNPK----WRLSVQTHKFIGIR 211
N K W HK I IR
Sbjct: 200 IILANLKKLSEW------HKNIIIR 218
>gi|320593680|gb|EFX06089.1| anaerobic ribonucleoside-triphosphate reductase [Grosmannia
clavigera kw1407]
Length = 831
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D 100
R + C +C + + ++ + I E + V++GGEP +
Sbjct: 640 RCNLACPWCHNGPLVNG--ERDKFTPLDIFRHITET------PHKSLVISGGEPTIHKGL 691
Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
+P ++ L K G I ++ NGT
Sbjct: 692 LPFMRLLKKAGVSIKLDHNGTSP 714
>gi|294338901|emb|CAZ87238.1| Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone
biosynthesis protein E) (Coenzyme PQQ synthesis protein
III) [Thiomonas sp. 3As]
Length = 372
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC DF + D ++++ G + +
Sbjct: 8 PLWILAELTYRCPLHCAFCYNPVDFARHD----QEISTDDWLRVLQQGRALGAVQCGF-- 61
Query: 90 LTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
+GGEPLL+ D+ + + ++ G+ + T+G
Sbjct: 62 -SGGEPLLRDDLEVLVAEAHRLGYYTNLLTSG 92
>gi|219851443|ref|YP_002465875.1| molybdenum cofactor biosynthesis protein A [Methanosphaerula
palustris E1-9c]
gi|219545702|gb|ACL16152.1| molybdenum cofactor biosynthesis protein A [Methanosphaerula
palustris E1-9c]
Length = 291
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 22 RVAVFCR---FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
R R C+L C +C + + + +++ ++I
Sbjct: 8 RPVTNLRVSLTQACDLN-----------CIYC---HAEGEVNPSVQLSAEEIGEII---R 50
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+ + R TGGEPLL+ D+ I G E ++ TN T
Sbjct: 51 VATDFGVRSVKFTGGEPLLREDLTSIIQAVPSGIETSITTNATH 94
>gi|157163980|ref|YP_001466045.1| molybdenum cofactor biosynthesis protein A [Campylobacter concisus
13826]
gi|166217240|sp|A7ZB87|MOAA_CAMC1 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|112801191|gb|EAT98535.1| molybdenum cofactor biosynthesis protein A [Campylobacter concisus
13826]
Length = 322
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 20/147 (13%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
R + +CR+C T F + +L + ++ + +TGGEPL++
Sbjct: 20 RCNFRCRYCMPTTPFSWTPKEN-----LLTFEELFLFVKVAIDEGVKKIRITGGEPLVRK 74
Query: 100 DVPLIQAL---NKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCDLKIKGGQE- 148
D+ + + K ++A+ TNG + P G+ I +S + K K +
Sbjct: 75 DLDVFIKMISDYKPDIDLALTTNGFMLPHFAKRLKDAGLKRINMSLDTLNEQKAKFIAQK 134
Query: 149 --LKLVFPQVNVSPENYIGFDFERFSL 173
L V + + + +L
Sbjct: 135 SVLHEVLAGFEAALDAGLKVKINTVAL 161
>gi|269138270|ref|YP_003294970.1| pyruvate formate lyase II activase [Edwardsiella tarda EIB202]
gi|267983930|gb|ACY83759.1| pyruvate formate lyase II activase [Edwardsiella tarda EIB202]
Length = 252
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 42/138 (30%), Gaps = 22/138 (15%)
Query: 25 VFCRFSGCNLWSGREQD-----------RLSAQCRFC-------DTDFVGIQGTKGGRYN 66
VF F GC + R +C C D G G
Sbjct: 2 VF--FKGCPHRCPWCANPESISPAPQTVRREQRCLHCTPCLNDADECPSGAMERIGRTVT 59
Query: 67 VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKR--GFEIAVETNGTIEP 124
+ QL + + + G L+GGE LLQ R G A+ET G
Sbjct: 60 LAQLEAEVMKDVVFFRSSGGGVTLSGGEVLLQAAFATRFLTRLRRLGVHCALETAGDGPA 119
Query: 125 PQGIDWICVSPKAGCDLK 142
+ + + + DLK
Sbjct: 120 SRLLPLASLCDEVLFDLK 137
>gi|225568820|ref|ZP_03777845.1| hypothetical protein CLOHYLEM_04899 [Clostridium hylemonae DSM
15053]
gi|225162319|gb|EEG74938.1| hypothetical protein CLOHYLEM_04899 [Clostridium hylemonae DSM
15053]
Length = 360
Score = 39.9 bits (92), Expect = 0.23, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R +A C G + Q ++ GE + +L
Sbjct: 71 CNLHCQGCYARANASC---------TDGGGQAQLTAAQWGEI---FCQAGELGVAFILLA 118
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
GGEPLL+ DV L +A R V TNGT+
Sbjct: 119 GGEPLLRRDV-LAEAGRHRRILFPVFTNGTM 148
>gi|195952719|ref|YP_002121009.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
gi|195932331|gb|ACG57031.1| Radical SAM domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 358
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVL 90
CNL C FC + + K Y + + + D++++ + ++ VL
Sbjct: 33 CNLS-----------CIFC---YSSAKKAKQPSYFDKNNIKDIVKKL---SDLNTKFVVL 75
Query: 91 TGGEPLLQVDVPL-IQALNKRGFEIAVETNGTIEPPQGIDWI 131
+GGEPLL D+ + L + G +++ TNG + I+ I
Sbjct: 76 SGGEPLLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELI 117
>gi|302205485|gb|ADL09827.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Corynebacterium pseudotuberculosis C231]
Length = 193
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 36/188 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
A F GC L +C +C +Q G +++ + L+ +
Sbjct: 1 MAAAF--TQGCPL-----------RCVYCHN--SQLQAFTPGAHSLAEFLSLL----SSR 41
Query: 82 EKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE---------PPQGIDWI 131
V++GGEP ++ I A++ GF + + T G P DW+
Sbjct: 42 HGLIDAAVISGGEPTAVRGLGDAIAAIHNIGFPVGIHTCGYAPSRIAELLRDPATTPDWV 101
Query: 132 CVSPKAGCDLKIK----GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
+ KA + + V+ + + E+ I +G +E+N +
Sbjct: 102 GLDIKALPRHMREVTGCSPRVATAVWDSLRILQESEIDVTLRTTL---WEGSVIEQNIDE 158
Query: 188 AISYCFQN 195
S
Sbjct: 159 LRSVVKNR 166
>gi|218556914|ref|YP_002389828.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
IAI1]
gi|218363683|emb|CAR01342.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
IAI1]
Length = 287
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 43/226 (19%), Positives = 69/226 (30%), Gaps = 55/226 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAI 189
+ + N + I E R + P +L+ LA+
Sbjct: 185 QLTGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQHIEELAV 230
>gi|90422688|ref|YP_531058.1| glycyl-radical activating protein [Rhodopseudomonas palustris
BisB18]
gi|90104702|gb|ABD86739.1| Glycyl-radical enzyme activating [Rhodopseudomonas palustris
BisB18]
Length = 306
Score = 39.9 bits (92), Expect = 0.24, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 51/160 (31%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------------CRF-CD 51
++ G G VF GC L + S + C+ C
Sbjct: 18 YSIHDGPGIRT---IVF--LKGCPLACRWCSNPESQKAEPSLFFQKANCVKCGKCKEVCP 72
Query: 52 TDFVGIQ-------------------------GTKGGRYNVDQLADLIEEQWITGEKEGR 86
T + + KG V Q+ +++ + G
Sbjct: 73 TGAISPENPAFIDRSKCISCGTCANVCAYGALTMKGRSMTVWQVMQELQKDATNYRRSGG 132
Query: 87 YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
L+GGEPL+Q D + L++A +G+ A+ET G +
Sbjct: 133 GITLSGGEPLVQSDFALELLKACKDKGWSTAMETTGNVPQ 172
>gi|194443202|ref|YP_002043379.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194401865|gb|ACF62087.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
Length = 292
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78
Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
C D G G +D+L + + I G L+GGE L+Q
Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 139 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDAERAREVIN 189
>gi|167837250|ref|ZP_02464133.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Burkholderia thailandensis MSMB43]
Length = 239
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 17 GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
G A VF GC G +C + + + D +
Sbjct: 26 GQFA--AVVFV--QGCPWRCG-----------YCHNPHL-----QPRSHPAGIEWDALLA 65
Query: 77 QWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDW 130
V +GGEP + I + + GF+I + + GT +DW
Sbjct: 66 FLARRVGLIDAVVFSGGEPSIDPALAASIGDVRQLGFKIGLHSAGTHPRRLTPLLPSLDW 125
Query: 131 ICVSPKAGCDLKIK 144
I + KA D +
Sbjct: 126 IGLDVKAPFDDYAR 139
>gi|311281574|ref|YP_003943805.1| glycyl-radical enzyme activating protein family [Enterobacter
cloacae SCF1]
gi|308750769|gb|ADO50521.1| glycyl-radical enzyme activating protein family [Enterobacter
cloacae SCF1]
Length = 291
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 36/216 (16%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC-- 50
IF +L G G VF F GC + R ++C C
Sbjct: 23 IFNIQRYSLNDGRGIRT---VVF--FKGCPHRCPWCANPESLSPHIHTVRRESKCLHCAP 77
Query: 51 ---DTDF--VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
D + G G +D L + + + G L+GGE L+Q
Sbjct: 78 CLRDANECPSGAFENIGRDVTLDALVQEVMKDDVFFRASGGGVTLSGGEVLMQAPFAARF 137
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP-QVNVSPEN 162
+ L + G A+ET G + + + DLKI ++ KLV + N
Sbjct: 138 LARLRQLGVHTAMETAGDAPLSRLLPVANQCDEVLFDLKIMDARQAKLVLNLNLPRVLAN 197
Query: 163 YIGFDFERFSLQPMDG-----PFLEENTNLAISYCF 193
+ + P +EN +++
Sbjct: 198 FRHLAASGICVIPRIPLIPGYTLSQENLQRVLAFLQ 233
>gi|288818520|ref|YP_003432868.1| coenzyme PQQ synthesis protein E [Hydrogenobacter thermophilus
TK-6]
gi|288787920|dbj|BAI69667.1| coenzyme PQQ synthesis protein E [Hydrogenobacter thermophilus
TK-6]
gi|308752110|gb|ADO45593.1| coenzyme PQQ biosynthesis protein E [Hydrogenobacter thermophilus
TK-6]
Length = 362
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + C +C + D+ +I E E + +TGGEP ++ D+
Sbjct: 17 RCNMHCWYCYNPQDLNEYAPQKELTTDEWRKVIRE---AAELGIIHIHITGGEPTIRQDL 73
Query: 102 P-LIQALNKRGFEIAVETN 119
P ++Q G + + TN
Sbjct: 74 PNIVQEAKNCGLYVNLITN 92
>gi|224585929|ref|YP_002639728.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224470457|gb|ACN48287.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
Length = 279
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 11 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 65
Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
C D G G +D+L + + I G L+GGE L+Q
Sbjct: 66 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 125
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 126 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDAERAREVIN 176
>gi|161617257|ref|YP_001591222.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161366621|gb|ABX70389.1| hypothetical protein SPAB_05098 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 279
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 11 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 65
Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
C D G G +D+L + + I G L+GGE L+Q
Sbjct: 66 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 125
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 126 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDAERAREVIN 176
>gi|149375808|ref|ZP_01893576.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter
algicola DG893]
gi|149359933|gb|EDM48389.1| pyrroloquinoline quinone biosynthesis protein PqqE [Marinobacter
algicola DG893]
Length = 384
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q ++ ++ + E +
Sbjct: 18 PLWLLAELTYRCPLQCPYCSNPLDFAQTQ--QELTTEEWTRVLRQ---GREMGAAQLGFS 72
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
GGEPL++ D+P + A + G+ + T+G
Sbjct: 73 GGEPLVRQDLPELIAEARQLGYYTNLITSG 102
>gi|16767380|ref|NP_462995.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167551385|ref|ZP_02345140.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|167991694|ref|ZP_02572793.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168262975|ref|ZP_02684948.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|197265842|ref|ZP_03165916.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|198242232|ref|YP_002218044.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207859305|ref|YP_002245956.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|16422682|gb|AAL22954.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|197244097|gb|EDY26717.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197936748|gb|ACH74081.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205323778|gb|EDZ11617.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205329972|gb|EDZ16736.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205348294|gb|EDZ34925.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206711108|emb|CAR35482.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
(pfl-activating enzyme) [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261249231|emb|CBG27093.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
(pfl-activating enzyme) [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996418|gb|ACY91303.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160622|emb|CBW20153.1| pyruvate formate-lyase 2 activating enzyme (ec 1.97.1.4)
(pfl-activating enzyme) [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312915232|dbj|BAJ39206.1| pyruvate formate lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321225408|gb|EFX50466.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323132461|gb|ADX19891.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326625836|gb|EGE32181.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 292
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78
Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
C D G G +D+L + + I G L+GGE L+Q
Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 139 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDAERAREVIN 189
>gi|62182575|ref|YP_218992.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62130208|gb|AAX67911.1| putative pyruvate formate lyase activating enzyme 2 [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|322717076|gb|EFZ08647.1| pyruvate formate lyase II activase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 292
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78
Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
C D G G +D+L + + I G L+GGE L+Q
Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 139 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDVERAREVIN 189
>gi|191167423|ref|ZP_03029238.1| radical SAM domain protein [Escherichia coli B7A]
gi|190902563|gb|EDV62297.1| radical SAM domain protein [Escherichia coli B7A]
Length = 287
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 43/226 (19%), Positives = 69/226 (30%), Gaps = 55/226 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAI 189
+ + N + I E R + P +L+ LA+
Sbjct: 185 QLTGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQHIEELAV 230
>gi|168467465|ref|ZP_02701302.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|195630238|gb|EDX48878.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
Length = 292
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
IF +L G+G VF F GC + S +C
Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLRCTP 78
Query: 50 C----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
C D G G +D+L + + I G L+GGE L+Q
Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 139 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDAERAREVIN 189
>gi|156935145|ref|YP_001439061.1| pyrroloquinoline quinone biosynthesis protein PqqE [Cronobacter
sakazakii ATCC BAA-894]
gi|156533399|gb|ABU78225.1| hypothetical protein ESA_02996 [Cronobacter sakazakii ATCC BAA-894]
Length = 378
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +Q D+ + +
Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDFAAQEN--ELTTEQWIDVFRQ---ARAMGAVQLGFS 64
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPL++ D+P LI A GF + T+G
Sbjct: 65 GGEPLVRKDLPELIAAARGMGFYTNLITSG 94
>gi|56475902|ref|YP_157491.1| heme D1 biosynthesis protein NIRJ [Aromatoleum aromaticum EbN1]
gi|56311945|emb|CAI06590.1| Heme D1 biosynthesis protein NIRJ [Aromatoleum aromaticum EbN1]
Length = 401
Score = 39.9 bits (92), Expect = 0.25, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + DTDF G + ++ ++++ +L+
Sbjct: 36 CNLTCKHCYSISA------DTDF-------PGELSTAEVFGVMDDL---KAFSVPVLILS 79
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ + + K GF + + +NG
Sbjct: 80 GGEPLLRPDIFEIGRHAKKMGFYVGLSSNG 109
>gi|332083373|gb|EGI88604.1| radical SAM superfamily protein [Shigella boydii 5216-82]
Length = 287
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 HLTGRDNQQIKRSICLLAER 204
>gi|260858554|ref|YP_003232445.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O26:H11 str. 11368]
gi|257757203|dbj|BAI28705.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli O26:H11 str. 11368]
gi|281181522|dbj|BAI57852.1| conserved hypothetical protein [Escherichia coli SE15]
gi|309704888|emb|CBJ04241.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|315616253|gb|EFU96872.1| radical SAM superfamily protein [Escherichia coli 3431]
gi|323157733|gb|EFZ43838.1| radical SAM superfamily protein [Escherichia coli EPECa14]
Length = 287
Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 43/226 (19%), Positives = 69/226 (30%), Gaps = 55/226 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAI 189
+ + N + I E R + P +L+ LA+
Sbjct: 185 QLTGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQHIEELAV 230
>gi|305663800|ref|YP_003860088.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
gi|304378369|gb|ADM28208.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
Length = 378
Score = 39.5 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 23/187 (12%)
Query: 15 GE-GGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL 73
GE G + +AVF F+GCNL Q+ D + RY +D+ L
Sbjct: 132 GEYGYY--NLAVF--FAGCNLDCVFCQNW--------DHKDIITSWDLRKRYTIDR-EYL 178
Query: 74 IEEQWITGEKEGRYCVLTGGEP---LLQVDVPLIQALNKRG---FEIAVETNGTIEPPQG 127
IE+ GG+P ++ + + +G I ETNG +
Sbjct: 179 IEKALKNDRITC--ICFFGGDPGPHIIDALYISRKIVENKGSSIKRICWETNGLVNTEIM 236
Query: 128 IDWICVSPKAGCDLKIKGGQELKLVFPQV-NVSPENYIGFDFERFSLQPMDGPFLEENTN 186
+ +S ++G +KI ++ + + + + L G EE
Sbjct: 237 REMARLSLESGGIVKIDWKAWTSSIYQALTGIDGYRAVERIKKNVELVAKLGKLREEVPL 296
Query: 187 LAISYCF 193
L IS
Sbjct: 297 LVISILL 303
>gi|110668841|ref|YP_658652.1| molybdenum cofactor biosynthesis protein A [Haloquadratum walsbyi
DSM 16790]
gi|121692152|sp|Q18G49|MOAA_HALWD RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|109626588|emb|CAJ53052.1| molybdenum cofactor biosynthesis protein A [Haloquadratum walsbyi
DSM 16790]
Length = 323
Score = 39.5 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + + D++ + + + TGGEP+L+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPMDPQDDEMSTDDVVRFLEVVSQFDIGKVKFTGGEPMLRD 78
Query: 100 DVPLIQALNKRGFEIAVETNGTI 122
D+ I E+++ TNGT
Sbjct: 79 DLTEIIRRTPSSMEVSMTTNGTF 101
>gi|193065661|ref|ZP_03046727.1| radical SAM domain protein [Escherichia coli E22]
gi|194429159|ref|ZP_03061688.1| radical SAM domain protein [Escherichia coli B171]
gi|260847270|ref|YP_003225048.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O103:H2 str. 12009]
gi|192926734|gb|EDV81362.1| radical SAM domain protein [Escherichia coli E22]
gi|194412774|gb|EDX29067.1| radical SAM domain protein [Escherichia coli B171]
gi|257762417|dbj|BAI33914.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli O103:H2 str. 12009]
Length = 287
Score = 39.5 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QITGRDNQQIKRSICLLAER 204
>gi|325848800|ref|ZP_08170310.1| putative pyruvate formate-lyase 1-activating enzyme [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480444|gb|EGC83506.1| putative pyruvate formate-lyase 1-activating enzyme [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 305
Score = 39.5 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQAL 107
C T + ++G V+++ + +++ + L+GGE L+Q D L++A
Sbjct: 99 CPTGALEVKGKN---MTVEEVINELKKDESYYHRSNGGITLSGGEALMQADFCRELLKAC 155
Query: 108 NKRGFEIAVETNGT 121
RG+ A+ET G
Sbjct: 156 KARGWHTAIETEGY 169
>gi|240145227|ref|ZP_04743828.1| molybdenum cofactor biosynthesis protein A [Roseburia intestinalis
L1-82]
gi|257202691|gb|EEV00976.1| molybdenum cofactor biosynthesis protein A [Roseburia intestinalis
L1-82]
Length = 345
Score = 39.5 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 17/161 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
DR + +C++C + N+ ++++ R+ LTGGEPL++
Sbjct: 18 DRCNLRCKYC----MPGDIETTDMENLLTYEEIVQVTETAAALGIRHIRLTGGEPLVRRG 73
Query: 100 -DVPLIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVS---PKAGCDLKIKGGQ 147
+ + N G E + + TNG G+D + VS ++ G
Sbjct: 74 CVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAGLDSVNVSLDTLDETEFQRLTGRD 133
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
EL V +N + E I Q +D + + TN
Sbjct: 134 ELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174
>gi|46579270|ref|YP_010078.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603169|ref|YP_967569.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
gi|46448684|gb|AAS95337.1| radical SAM domain protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563398|gb|ABM29142.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
gi|311233097|gb|ADP85951.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
Length = 393
Score = 39.5 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + + +Q +I++ + + +
Sbjct: 50 CNLKCVHCYAKA-------------VDPEGKDEISTEQAKTIIDDL---AQYGAPVMLFS 93
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
GGEPL+ Q V L + RG + TNG
Sbjct: 94 GGEPLVRQDLVELAKHATGRGMRAVISTNG 123
>gi|194437731|ref|ZP_03069826.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
gi|194423227|gb|EDX39219.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
Length = 305
Score = 39.5 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 55/163 (33%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-- 50
IF +L G G F F GC L + S + C C
Sbjct: 12 IFNIQRYSLHDGPGIRT-IP--F--FKGCPLSCKWCSNPESQRHSPELLFKKNDCIRCGK 66
Query: 51 --D--------TDFVGIQ--------------------GTKGGRYNVDQLADLIEEQWIT 80
D T KG R +V + +E++
Sbjct: 67 CIDACPQQALSTTNAWFINRDRCIQCGKCTEICPTRALEMKGKRMSVTAVMRELEKEENL 126
Query: 81 GEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+ G L+GGEPL Q + L++A +G+ +ET+G
Sbjct: 127 YRRSGGGITLSGGEPLAQPEFARELLKACKAKGWHTTIETSGF 169
>gi|148381132|ref|YP_001255673.1| glycyl-radical activating family protein [Clostridium botulinum A
str. ATCC 3502]
gi|148290616|emb|CAL84745.1| putative pyruvate formate-lyase 2 activating enzyme [Clostridium
botulinum A str. ATCC 3502]
Length = 252
Score = 39.5 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 12/158 (7%)
Query: 47 CRFCD--TDFVGIQGTK--GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-- 100
C FC T+F + G ++ I + + E+ +GGEP+L D
Sbjct: 36 CNFCGKCTNFCPNNAREYVGKDLTPQEIIKEIIKDEVFYEQSSGGVTFSGGEPMLHADFI 95
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN--- 157
+++ RG ++T+G + + DLK + K N
Sbjct: 96 NGILEECKVRGIHTTIDTSGYVSWDKFEKVRDKVDLFLYDLKSMNNEIHKKYTGVENTII 155
Query: 158 -VSPENYIGFDFERFSLQPM--DGPFLEENTNLAISYC 192
+ E + + P+ D +N + I +
Sbjct: 156 LENLELLSKYGHNIYLRIPIINDVNDNNKNIDETIKFI 193
>gi|305682301|dbj|BAJ16237.1| heme D1 biosynthesis protein NirJ [Rubrivivax gelatinosus IL144]
Length = 406
Score = 39.5 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + D D+ G + VD + D ++ + +L+
Sbjct: 41 CNLTCKHCYALSA------DHDYAGELS----KAEVDTVMDDLKA------YQVPVLILS 84
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPL++ D+ + + F + TNG
Sbjct: 85 GGEPLMRPDLFEIAERAKAMRFYTGLSTNG 114
>gi|298736472|ref|YP_003728998.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori B8]
gi|298355662|emb|CBI66534.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori B8]
Length = 321
Score = 39.5 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 35/185 (18%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKDAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQTHK 206
LK + S + + M +E L + Y K
Sbjct: 135 DALKNALEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKN-----------K 179
Query: 207 FIGIR 211
I IR
Sbjct: 180 HIQIR 184
>gi|238618595|ref|YP_002913420.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
gi|238379664|gb|ACR40752.1| Radical SAM domain protein [Sulfolobus islandicus M.16.4]
Length = 344
Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 32/180 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + L + + +
Sbjct: 36 CNLRCRM--------CPF----------WRRKDEKLLSLEEEVLMLKSLERAGVLFMGFE 77
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
GGEPLL+ D+ I + + F ++ TNG + S D +
Sbjct: 78 GGEPLLRRDLEQILEESYKRFYTSLVTNG-----WLLKDRVKSISENLDYLFVSIDGIDE 132
Query: 152 VFPQV----NVSPENYIGFDFERFSLQPMDGPF--LEENTNLAISYCF--QNPKWRLSVQ 203
V ++ G R L P+ F EN + Q ++S+Q
Sbjct: 133 VHDKIRGISGAFERAVEGIKEARKYL-PVAISFTITRENMDQVKDVIELAQKLNVKISIQ 191
>gi|325263807|ref|ZP_08130540.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
D5]
gi|324030845|gb|EGB92127.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
D5]
Length = 288
Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 11/127 (8%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNVDQLADLIEEQWITGE--KEGR 86
C + R++ A CR C + G Y ++ L+EE +G
Sbjct: 57 CPHHAIRDKQLDRAVCRECKGRECVTEHRTKGIRLSYEEIEVDALVEEIIGNSPMFYDGG 116
Query: 87 YCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
TGGE LQ D ++ L G AVETNG Q C + + K
Sbjct: 117 GVTFTGGEATLQFDELLEALKRLTAAGIHTAVETNGAHPRLQE----CFPYISQLIMDCK 172
Query: 145 GGQELKL 151
E K
Sbjct: 173 LCDEEKH 179
>gi|227826525|ref|YP_002828304.1| radical SAM protein [Sulfolobus islandicus M.14.25]
gi|227458320|gb|ACP37006.1| Radical SAM domain protein [Sulfolobus islandicus M.14.25]
Length = 344
Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 32/180 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + L + + +
Sbjct: 36 CNLRCRM--------CPF----------WRRKDEKLLSLEEEVLMLKSLERAGVLFMGFE 77
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
GGEPLL+ D+ I + + F ++ TNG + S D +
Sbjct: 78 GGEPLLRRDLEQILEESYKRFYTSLVTNG-----WLLKDRVKSISENLDYLFVSIDGIDE 132
Query: 152 VFPQV----NVSPENYIGFDFERFSLQPMDGPF--LEENTNLAISYCF--QNPKWRLSVQ 203
V ++ G R L P+ F EN + Q ++S+Q
Sbjct: 133 VHDKIRGISGAFERAVEGIKEARKYL-PVAISFTITRENMDQVKDVIELAQKLNVKISIQ 191
>gi|152995344|ref|YP_001340179.1| molybdenum cofactor biosynthesis protein A [Marinomonas sp. MWYL1]
gi|150836268|gb|ABR70244.1| molybdenum cofactor biosynthesis protein A [Marinomonas sp. MWYL1]
Length = 341
Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 23/147 (15%)
Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR +C +C D D + R ++ L +++ + +TGGEPL++
Sbjct: 23 DRCDFRCTYCMDEDVTFM-----PRDHILSLEEIVHVAKTFISMGTKRIRITGGEPLVRK 77
Query: 100 DVPLIQALNKRG---FEIAVETNGTIEP-------PQGIDWICVS---PKAGCDLKIKGG 146
++ E+ + TNG+ G+ I +S KA +
Sbjct: 78 NILWAIEQIANTDGLEELTITTNGSQLYKMAQSLLDAGVSRINISLDTLKAERFYALTRR 137
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSL 173
+ + V + + F+R +
Sbjct: 138 NKFQQVIDGIEAA----SKLPFKRLKI 160
>gi|294338052|emb|CBJ93890.1| Radical SAM family phage protein [Campylobacter phage CP220]
Length = 288
Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D + +C +C D + ++++ + ++TGGE
Sbjct: 24 DECNFRCSYC-----FRASKPRKPIPKDTIMRVVKQLNDFSLRYKIKVIMTGGEVTTLPY 78
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQG----IDWICVSPKAGCDLKIK 144
+ + + TNG + ++I +S + K K
Sbjct: 79 FEEVVKSLNENIALELNTNGMLLSNDNLFKRFEFISMSLHSEYFEKQK 126
>gi|294634565|ref|ZP_06713100.1| putative pyruvate formate-lyase 3-activating enzyme [Edwardsiella
tarda ATCC 23685]
gi|291092079|gb|EFE24640.1| putative pyruvate formate-lyase 3-activating enzyme [Edwardsiella
tarda ATCC 23685]
Length = 323
Score = 39.5 bits (91), Expect = 0.28, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETN 119
G + + + IE ++ G L+GGEP +Q + + + G AVET
Sbjct: 125 GEEISAETILSQIERDRPFYQRSGGGITLSGGEPFMQPRLAETLLRRCYQAGIHTAVETC 184
Query: 120 GTIEP 124
+
Sbjct: 185 LHVPW 189
>gi|189425044|ref|YP_001952221.1| methyltransferase type 11 [Geobacter lovleyi SZ]
gi|189421303|gb|ACD95701.1| Methyltransferase type 11 [Geobacter lovleyi SZ]
Length = 1000
Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 22/165 (13%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + C C +G + ++ QL I++ + R LTGGEPL+ D
Sbjct: 89 DRCNLSCSHC---LFSSGPDQGRQLSLQQLKQHIDD---AAAQGCRLFALTGGEPLVHPD 142
Query: 101 --VPLIQALNKRGFEIAVETNG---------TIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
+ L IAV TNG + I + + ++G
Sbjct: 143 FAELIGHILAIPDSRIAVLTNGLSVADKLAADWPRQRIHLQISLDGRPEHHDLLRGAGSF 202
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K + Q+ + + F+L + + Y
Sbjct: 203 KQLEQQLTWLQQQHW-----HFTLSCCVTKENARDLTWLVDYAAD 242
>gi|121607765|ref|YP_995572.1| molybdenum cofactor biosynthesis protein A [Verminephrobacter
eiseniae EF01-2]
gi|121552405|gb|ABM56554.1| GTP cyclohydrolase subunit MoaA [Verminephrobacter eiseniae EF01-2]
Length = 384
Score = 39.5 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + + + ++ + R LTGGEPLL+
Sbjct: 48 DRCNFRCNYCMPKEVFDKNYPYLPHGALLRFEEIARLARLFLAHGVRKIRLTGGEPLLRK 107
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++P + A + ++ + TNG+ G++ + VS + + +
Sbjct: 108 NLPALVAQLAALRTADGQAPDLTLTTNGSLLARQARALRDAGLNRVTVSLDSLDEAVFRR 167
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ QV E R
Sbjct: 168 MNDVDFPVAQVLAGIEAARAAGLSRI 193
>gi|119897898|ref|YP_933111.1| molybdenum cofactor biosynthesis protein A [Azoarcus sp. BH72]
gi|119670311|emb|CAL94224.1| molybdenum cofactor biosynthesis protein A [Azoarcus sp. BH72]
Length = 357
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 20/144 (13%)
Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
DR + +C +C D D+ + +G + +++ + ++ R +TGGE
Sbjct: 43 DRCNFRCVYCMPREVFDKDYPFL--PRGQLLSFEEIL-RVARLFVAR--GVRKIRITGGE 97
Query: 95 PLLQVDVPLIQALNKR--GFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
PLL+ D+ + + G E+ + TNG G+ + VS A D +
Sbjct: 98 PLLRKDIERLVEMLAALDGVELTLTTNGVLLPRLAKKLRDAGLHRVTVSLDALDDATFRR 157
Query: 146 GQELKLVFPQVNVSPENYIGFDFE 169
+ +V FE
Sbjct: 158 MNDADYPVERVLEGIAAARDAGFE 181
>gi|311281583|ref|YP_003943814.1| glycyl-radical enzyme activating protein family [Enterobacter
cloacae SCF1]
gi|308750778|gb|ADO50530.1| glycyl-radical enzyme activating protein family [Enterobacter
cloacae SCF1]
Length = 303
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 48/196 (24%), Gaps = 54/196 (27%)
Query: 1 MKLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQC 47
MK I I + T G G R VF CNL + +C
Sbjct: 1 MKTGLISRIQRYSTKDGPGI---RSTVFM--QQCNLRCQWCANPETIRPGINVFWFKERC 55
Query: 48 RFCDTDFVGIQG----------------------------------TKGGRYNVDQLADL 73
R C T G G + LA+
Sbjct: 56 RQCGTCVQAAHGAITLAAPGEGVNIDRKQCDNLLEMVPLCPYDAYEQVGEAMSSQALAER 115
Query: 74 IEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
+ + +GGEP LQ D L G + ++T G + + +
Sbjct: 116 LLRDKAFYDASQGGVTFSGGEPALQADFVRETAARLRAEGVHVCLDTAGHLRWEKLRPLV 175
Query: 132 CVSPKAGCDLKIKGGQ 147
D K
Sbjct: 176 EAVDLVSYDFKAFDAD 191
>gi|293396112|ref|ZP_06640392.1| coenzyme PQQ synthesis protein E [Serratia odorifera DSM 4582]
gi|291421245|gb|EFE94494.1| coenzyme PQQ synthesis protein E [Serratia odorifera DSM 4582]
Length = 379
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +Q ++ + G + +
Sbjct: 13 PLWLLAELTYRCPLQCPYCSNPLDFAAQE--KELTTEQWINVFRQARAMGSVQ---LGFS 67
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GGEPL++ D+P I A GF + T+G
Sbjct: 68 GGEPLVRKDLPELIAAARDLGFYTNLITSG 97
>gi|270261850|ref|ZP_06190122.1| coenzyme PQQ synthesis protein E [Serratia odorifera 4Rx13]
gi|270043726|gb|EFA16818.1| coenzyme PQQ synthesis protein E [Serratia odorifera 4Rx13]
Length = 379
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C +Q D+ + G + +
Sbjct: 13 PLWLLAELTYRCPLQCPYCSNPLDFAAQE--QELTTEQWIDVFRQARAMGSVQ---LGFS 67
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GGEPL++ D+P I A GF + T+G
Sbjct: 68 GGEPLVRKDLPELIAAARDLGFYTNLITSG 97
>gi|149195424|ref|ZP_01872507.1| molybdenum cofactor biosynthesis protein A [Caminibacter
mediatlanticus TB-2]
gi|149134429|gb|EDM22922.1| molybdenum cofactor biosynthesis protein A [Caminibacter
mediatlanticus TB-2]
Length = 318
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
R + +C +C +T F +V ++ E + ++ + +TGGEPL++
Sbjct: 20 RCNFRCMYCMPNTPFEWQPHE-----DVLSYEEMFEFLRLAIDEGVKKIRITGGEPLVRK 74
Query: 100 DVPLIQALN---KRGFEIAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIKGG 146
++ + + + ++A+ TNG G+ + +S K KI
Sbjct: 75 ELEVFIKMLSKYNKNLDLALTTNGYFLKEKAKILKEAGLKRVNISLDTLKKDVAKKIVQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
L+ V ++ + + + M G E T+L + Y
Sbjct: 135 DVLEKVLEGIDEAIKVGLKVKLNCVV---MKGINDNEITDL-LDYAKDK 179
>gi|157151170|ref|YP_001451063.1| formate acetyltransferase activating enzyme [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075964|gb|ABV10647.1| formate acetyltransferase activating enzyme [Streptococcus gordonii
str. Challis substr. CH1]
Length = 258
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-- 61
IF ++ G G VF GC L +C +C +
Sbjct: 8 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRMQPEPM 51
Query: 62 -----------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
G +V ++ D + + E+ G L+GGE Q + +++A
Sbjct: 52 LDATTKKNITMGEERSVVEIIDEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + + N I + F
Sbjct: 112 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKITGVKNELIVKNIHYAF 171
Query: 169 ER 170
Sbjct: 172 TH 173
>gi|78357617|ref|YP_389066.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78220022|gb|ABB39371.1| Elongator protein 3/MiaB/NifB [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 394
Score = 39.5 bits (91), Expect = 0.30, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 23/170 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + + +Q ++I + + + +
Sbjct: 50 CNLKCVHCYAQA-------------VDPEGNDEISTEQGKEIIRDL---AQYGAPVMLFS 93
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNG---TIEPPQGIDWICVS-PKAGCDLKIKGG 146
GGEPL++ V L + ++G + TNG T E + + + +S D +
Sbjct: 94 GGEPLVRKDLVELAKFATEQGMRAVISTNGTLITKEKARELKEVGLSYVGISLDGMEEVH 153
Query: 147 QELKLVFPQVNVSPENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQ 194
+ + V + E E + L+ +
Sbjct: 154 NKFRGVPNSFKKALEGIENCKAEGLKVGLRFTINKRNAPEVPKIFDLIKE 203
>gi|91776033|ref|YP_545789.1| pyrroloquinoline quinone biosynthesis protein PqqE [Methylobacillus
flagellatus KT]
gi|91710020|gb|ABE49948.1| Coenzyme PQQ biosynthesis protein E [Methylobacillus flagellatus
KT]
Length = 397
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQL--ADLIEEQWITGEKEGRYCV 89
LW E R C FC T ++ ++L I+ +
Sbjct: 20 PLWLLAEVTYRCPLHCAFC------YNPTDYDKHTKNELSTEQWIQVLRDARKLGALQLG 73
Query: 90 LTGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
++GGEPLL+ D+ ++ + G+ + T+G
Sbjct: 74 ISGGEPLLRDDIEDIVAEASSLGYYTNLITSG 105
>gi|320177701|gb|EFW52690.1| radical activating enzyme [Shigella boydii ATCC 9905]
Length = 287
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 HLTGRDNQQIKRSICLLAER 204
>gi|110667956|ref|YP_657767.1| molybdopterin-based tungsten cofactor biosynthesis protein
[Haloquadratum walsbyi DSM 16790]
gi|109625703|emb|CAJ52135.1| molybdopterin-based tungsten cofactor biosynthesis protein
[Haloquadratum walsbyi DSM 16790]
Length = 572
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC F G G + + + L+ Q I R +
Sbjct: 183 CNLS-----------CSFC---FASS-GPGGTHRSFETVEKLL--QTIVKSGGPRPIQFS 225
Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG---G 146
GGEP ++ D+P +++ + GF I + TNG + +S + ++
Sbjct: 226 GGEPTIRDDLPEIVERAGQMGFEHIQINTNGIELVEKKGYASRLSDAGVTAIYLQFDGLQ 285
Query: 147 QELKLVFPQVNVSPENYIGFDFER 170
E V+++ R
Sbjct: 286 SETYEAIRGVDLADLKREAVKTCR 309
>gi|145592144|ref|YP_001154146.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145283912|gb|ABP51494.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 372
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F F+GCN +C +C + G + + LA + Q E+
Sbjct: 152 TIF--FAGCNF-----------RCVYCQNWDISQDPEAGAEASPEALAAI---QVRLREE 195
Query: 84 EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114
R GGEP + + ++ L +RG +
Sbjct: 196 GARNINWVGGEPTPNIPFILESLRILARRGVNV 228
>gi|95930916|ref|ZP_01313646.1| Ribonucleoside-triphosphate reductase, anaerobic-like
[Desulfuromonas acetoxidans DSM 684]
gi|95133042|gb|EAT14711.1| Ribonucleoside-triphosphate reductase, anaerobic-like
[Desulfuromonas acetoxidans DSM 684]
Length = 195
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 50/183 (27%), Gaps = 27/183 (14%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GC C +C + + + + V
Sbjct: 29 QGCP-----------WHCHYCHNAALIPEQGQ-----QQLDWQQVVAFIQQRRGLLDGIV 72
Query: 90 LTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPKAGCDLKI 143
+GGEP + + + + G ++A+ TNG DW+ + KA D
Sbjct: 73 FSGGEPTAQTALIDAMHTVKELGMKVALHTNGAYSDRLRALLPLCDWVGMDLKAPFDDYE 132
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW--RLS 201
+ Q S E +D EE + ++ W L
Sbjct: 133 TITKCPASG-EQARQSAELLRASGVAHQFRTTVDPWLREEGRLEQMQALVES--WGETLV 189
Query: 202 VQT 204
+QT
Sbjct: 190 LQT 192
>gi|323494775|ref|ZP_08099874.1| pyrroloquinoline quinone biosynthesis protein PqqE [Vibrio
brasiliensis LMG 20546]
gi|323310968|gb|EGA64133.1| pyrroloquinoline quinone biosynthesis protein PqqE [Vibrio
brasiliensis LMG 20546]
Length = 371
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E + C +C G K N +Q ++E+ G + +
Sbjct: 10 PLWLLAELTYQCPLHCAYCSNP--TDLGDKANELNTEQWFSVLEQARKLGSVQ---LGFS 64
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPLL+ D+ L++ GF + T+G
Sbjct: 65 GGEPLLRKDLEQLVERGRSLGFYTNLITSG 94
>gi|317009222|gb|ADU79802.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
India7]
Length = 321
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLDFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
I L+ E+A+ TNG + D S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK + S + + + +E L + Y
Sbjct: 135 DALKNTLEGIEESLKVGLKLKLNTVV---IKSVNDDEILEL-LEYAKNR 179
>gi|302878328|ref|YP_003846892.1| Radical SAM domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302581117|gb|ADL55128.1| Radical SAM domain protein [Gallionella capsiferriformans ES-2]
Length = 367
Score = 39.5 bits (91), Expect = 0.31, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 23/166 (13%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ +C FC D++G + R ++ + + + G K + GEP+L D+
Sbjct: 48 CNHRCTFCAVDYIGYKPV---RLSLPAIERTLVQMGARGVKSVMFA--GEGEPMLHKDID 102
Query: 103 -LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKGGQ-----EL 149
++ A + G + A+ TN + + WI S AG +
Sbjct: 103 KMVIAAHAAGIDTAMTTNASVLSDAFVENALPLMSWIKASFNAGTAPTYARIHGTKERDF 162
Query: 150 KLVFPQVNVSPENYIGFDF-----ERFSLQPMDGPFLEENTNLAIS 190
V + E + + L P + +E L
Sbjct: 163 DQVVANLKRLVEARNRHGYSCVLGAQIVLLPENAAEVETLARLCRD 208
>gi|300718350|ref|YP_003743153.1| Pyrroloquinoline quinone biosynthesis protein E [Erwinia billingiae
Eb661]
gi|299064186|emb|CAX61306.1| Pyrroloquinoline quinone biosynthesis protein E [Erwinia billingiae
Eb661]
Length = 366
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R QC +C Q +Q ++ ++ + +GGEPL++ D+
Sbjct: 8 RCPLQCPYCSNPLDFAQQE--KELTTEQWIEVFKQ---ARQMGAVQLGFSGGEPLVRKDL 62
Query: 102 PL-IQALNKRGFEIAVETNG 120
P I+A GF + T+G
Sbjct: 63 PELIRAARDLGFYTNLITSG 82
>gi|297543929|ref|YP_003676231.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841704|gb|ADH60220.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 453
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 19/106 (17%)
Query: 22 RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
+ F + CNL C +C + +K + + ++ +
Sbjct: 84 KPQFFIYVTTECNLN-----------CPYC---YQRDYKSKNITISKKHVDSVVTTIDLL 129
Query: 81 GEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNGTI 122
+KE ++ V+ GGEPLL + + + + TNG
Sbjct: 130 SKKENKHLVIFGGEPLLPQNKQIIEYMFDRFKTIDATVEIVTNGIY 175
>gi|229061165|ref|ZP_04198515.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH603]
gi|228718036|gb|EEL69676.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH603]
Length = 147
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCIGCHNP-KSWNVCNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
IE+ +T +GG+P Q
Sbjct: 52 EIEKNSLTD------VTFSGGDPFFQ 71
>gi|171184855|ref|YP_001793774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoproteus neutrophilus V24Sta]
gi|170934067|gb|ACB39328.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Thermoproteus neutrophilus V24Sta]
Length = 239
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL +C FC + + G +V++L D + +
Sbjct: 24 LCGCNL-----------RCPFCHNWRIA-ERQNCGELDVERLLDELARAKPYIDY----L 67
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
+TGGEPLLQ L + + G ++ TN
Sbjct: 68 HVTGGEPLLQAEELRHLFKRAGEAGVARSLNTN 100
>gi|119356992|ref|YP_911636.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
DSM 266]
gi|119354341|gb|ABL65212.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
Length = 348
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 5/108 (4%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP--LLQV 99
R A C C V + +++ D + + + + LTGGEP
Sbjct: 21 RCQAACSHC---VVEAGPHRTEEVSLENALDWVNQIARYRDGHIKALSLTGGEPFDCFDK 77
Query: 100 DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+ + ++G I TNG + AG +
Sbjct: 78 LKAVARHGAEQGLIITTITNGFWATSPQEATKTLQEIAGLRMIGISAD 125
>gi|108805936|ref|YP_645873.1| radical SAM family protein [Rubrobacter xylanophilus DSM 9941]
gi|108767179|gb|ABG06061.1| Radical SAM [Rubrobacter xylanophilus DSM 9941]
Length = 367
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL + + + LI+E E + Y +
Sbjct: 23 GCNLRCAHCLSASGVR--------------RENELTTGEAKRLIDEW---AEMQVFYINV 65
Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
GGEPL + D L+ +RG + TNGT+ + DWI
Sbjct: 66 GGGEPLTRPDFFELMDYCLERGIGVKFSTNGTLVDDEAADWIS 108
>gi|289577626|ref|YP_003476253.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
gi|289527339|gb|ADD01691.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
Length = 453
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 19/106 (17%)
Query: 22 RVAVFCR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
+ F + CNL C +C + +K + + ++ +
Sbjct: 84 KPQFFIYVTTECNLN-----------CPYC---YQRDYKSKNITISKKHVDSVVTTIDLL 129
Query: 81 GEKEGRYCVLTGGEPLLQVD----VPLIQALNKRGFEIAVETNGTI 122
+KE ++ V+ GGEPLL + + + + TNG
Sbjct: 130 SKKENKHLVIFGGEPLLPQNKQIIEYMFDRFKTIDATVEIVTNGIY 175
>gi|110803581|ref|YP_697964.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
[Clostridium perfringens SM101]
gi|110684082|gb|ABG87452.1| 4Fe-4S binding domain protein/radical SAM domain protein
[Clostridium perfringens SM101]
Length = 273
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 46/164 (28%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------- 41
I +I F + G G +F F GCN +
Sbjct: 4 INKIIPFSCVDGPGNRM---VIF--FQGCNFKCFYCHNPETINKCISCGKCVENCEVGAL 58
Query: 42 --------RLSAQCRFCD--TDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
+C CD + Y+V++L IE+ R +
Sbjct: 59 SISDGKVIWDKEECISCDKCIKLCEHMSSPKLKEYSVEELVKKIEK----DSFFIRGITV 114
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
+GGE L + L + + K G +TNG + + +
Sbjct: 115 SGGECTLNSEFLIKLFREVKKLGLTCFADTNGNTKLDDELINLT 158
>gi|330999567|ref|ZP_08323280.1| radical SAM domain protein [Parasutterella excrementihominis YIT
11859]
gi|329574665|gb|EGG56228.1| radical SAM domain protein [Parasutterella excrementihominis YIT
11859]
Length = 281
Score = 39.5 bits (91), Expect = 0.32, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 45/173 (26%), Gaps = 25/173 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDF---VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
GCNL +C G + L DL + E
Sbjct: 72 GCNLRC-----------PYCQNASISMAGPDNCPHRLITPEGLTDLAVDLSKQ-EPRNIG 119
Query: 88 CVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNG------TIEPPQGIDWICVSPK-AG 138
T EP + + L++ G + V TNG E +D + + K
Sbjct: 120 VAFTYNEPTVCFEFIRDTSKLLHEAGLKSVVVTNGGLVRKYADELLPHVDALNIDLKGFS 179
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+ E V + + E+ + + P EE
Sbjct: 180 NEFYRYVKGEFDTVKEFIKAAVEHKCHVELTTLVI-PTKNDDPEEIGREVEWI 231
>gi|197120514|ref|YP_002132465.1| radical SAM protein [Anaeromyxobacter sp. K]
gi|196170363|gb|ACG71336.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
Length = 356
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ ++ R D + + +++ L E
Sbjct: 80 TAGCNLGCRFCQNWDISKARL-DELHSEVD------WTPERVVALAREA------GCPGI 126
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
T +P++ + + + A + G + TNG + P D + A DLK
Sbjct: 127 AFTYNDPIIWAEYAIDVADAAHAAGLFTVLVTNGYVSPEARRDLFSRADAANVDLK 182
>gi|120434818|ref|YP_860504.1| molybdopterin biosynthesis MoaA protein [Gramella forsetii KT0803]
gi|117576968|emb|CAL65437.1| molybdopterin biosynthesis MoaA protein [Gramella forsetii KT0803]
Length = 330
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 20/169 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C + ++ + ++IE + LTGGEPL++ +
Sbjct: 25 DRCNLRCFYC---MPEEGIELMEKSSIMTIEEIIELATKFRDLGVDTIRLTGGEPLVRKN 81
Query: 101 VPL-IQALNKRGFEIAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIKGGQEL 149
++ L K G + + TNG + G+ I +S + I
Sbjct: 82 FGYLVEELAKLGVTLKITTNGIMLDRYLELFQKIGLKKINLSLDTLNKARSVFITKRDYF 141
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLE------ENTNLAISYC 192
++ + + E + ++ ++ + ++ NL + +
Sbjct: 142 DRIWKNIQQALEMDMEVKLNIVLIKTVNDKEINDFIELTKHKNLTVKFI 190
>gi|300856502|ref|YP_003781486.1| putative molybdenum cofactor biosynthesis protein A [Clostridium
ljungdahlii DSM 13528]
gi|300436617|gb|ADK16384.1| predicted molybdenum cofactor biosynthesis protein A [Clostridium
ljungdahlii DSM 13528]
Length = 322
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C ++ G + + +I+ G + RY TGGEPL+ D
Sbjct: 18 DRCNLRCIYCMPKEGIVKRPYGDLLRFEDILKIIKAAATLGINKIRY---TGGEPLIMKD 74
Query: 101 VPL--IQALNKRGFE-IAVETNG 120
+ + N +G +A+ TNG
Sbjct: 75 IEYLIRETANIKGITDVAITTNG 97
>gi|300855584|ref|YP_003780568.1| radical SAM domain-containing protein [Clostridium ljungdahlii DSM
13528]
gi|300435699|gb|ADK15466.1| radical SAM domain protein [Clostridium ljungdahlii DSM 13528]
Length = 462
Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 31 GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G + R + +C+FC G ++
Sbjct: 77 GCPFDCGLCSEHRQHTCTALIEVTQRCNLKCKFC-----FADSYAGKEKDISIEKIKFMY 131
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNGTIEPPQGIDWICVS 134
+ + L+GGEP ++ D+P +++ K GF+ I V TNG +
Sbjct: 132 KKLLESSGSCNVQLSGGEPTIRDDLPDIVKLGRKLGFKFIQVNTNGIRMAQDEEYVKKLK 191
Query: 135 PKAGCDLKIKGGQELKLVFPQVN---------VSPENYIGFDFERFSLQPMDGPFLEENT 185
+ ++ L++ ++ + EN + + + E+N
Sbjct: 192 ISGLSSIFLQFDGTTDLIYRKLRGAELLNLKVKAIENCRKHNIGVVLVPTIVPGINEDNI 251
Query: 186 NLAISYCFQN-PKWR 199
I++ N P R
Sbjct: 252 GEIINFGLNNMPAVR 266
>gi|322834860|ref|YP_004214887.1| glycyl-radical enzyme activating protein family [Rahnella sp.
Y9602]
gi|321170061|gb|ADW75760.1| glycyl-radical enzyme activating protein family [Rahnella sp.
Y9602]
Length = 295
Score = 39.1 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 64/228 (28%), Gaps = 45/228 (19%)
Query: 5 SIKE-------IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-------- 44
+ E IF +L G+G VF F GC + S
Sbjct: 16 PVMEATERRGRIFNIQRFSLNDGQGIRT---LVF--FKGCPHRCPWCANPESMSPRIQVI 70
Query: 45 ---AQCRFCDTDF-------VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
A+C C T G G + L + + I G L+GGE
Sbjct: 71 KRQAKCLNCRTCLQDPNECPSGAMEYVGEDITLPDLMTRLLKDEIFFRSSGGGVTLSGGE 130
Query: 95 PLLQVD--VPLIQALNKRGFEIAVETNGTIE------PPQGIDWICVSPKAGCDLKIKGG 146
L+Q L++ L G A+ET G D + K + +
Sbjct: 131 VLMQYTFAGELLRELQALGIPTAIETAGDAPLGHLLALADHCDQVLYDFKIMDPAQARAV 190
Query: 147 QELKLVFPQVNVSPENYIGFD-FERFSLQPMDGPFLEENTNLAISYCF 193
+ N + G R L P LE N + +
Sbjct: 191 LNMDQPRVLQNFTALARRGVKLLPRLPLIPGFTLTLE-NMQQILDFLQ 237
>gi|291541305|emb|CBL14416.1| molybdenum cofactor biosynthesis protein A, bacterial [Roseburia
intestinalis XB6B4]
Length = 345
Score = 39.1 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 17/161 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
DR + +C++C + N+ ++++ R+ LTGGEPL++
Sbjct: 18 DRCNLRCKYC----MPGDIETTDMENLLTYEEIVQVTEAAAALGIRHIRLTGGEPLVRRG 73
Query: 100 -DVPLIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVS---PKAGCDLKIKGGQ 147
+ + N G E + + TNG G+D + VS ++ G
Sbjct: 74 CVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAGLDSVNVSLDTLDETEFQRLTGRD 133
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
EL V +N + E I Q +D + + TN
Sbjct: 134 ELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174
>gi|212696392|ref|ZP_03304520.1| hypothetical protein ANHYDRO_00929 [Anaerococcus hydrogenalis DSM
7454]
gi|212676670|gb|EEB36277.1| hypothetical protein ANHYDRO_00929 [Anaerococcus hydrogenalis DSM
7454]
Length = 305
Score = 39.1 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 51/157 (32%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-------- 50
++ G G VF GC L + S C C
Sbjct: 18 YSINDGPGIRT---IVF--LKGCPLRCAWCSNPESQHPNRELLYRKMLCIHCNLCLKACK 72
Query: 51 ---------------------DTDFVGIQGT---KGGRYNVDQLADLIEEQWITGEKEGR 86
D + G KG V+++ + +++ +
Sbjct: 73 QGALDPSNPNLIDREKCILCEDCANICPTGALEIKGKNMTVEEVINELKKDESYYHRSNG 132
Query: 87 YCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
L+GGE L+Q D L++A RG+ A+ET G
Sbjct: 133 GITLSGGEALMQADFCRELLKACKARGWHTAIETEGY 169
>gi|303328447|ref|ZP_07358884.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
sp. 3_1_syn3]
gi|302861441|gb|EFL84378.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
sp. 3_1_syn3]
Length = 306
Score = 39.1 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 44/161 (27%), Gaps = 52/161 (32%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSAQ------------------CR 48
+L G G VF F GC L W + + C
Sbjct: 11 YSLHDGPGIRT---TVF--FKGCPLRCRWCSNPTTQNPGRELLQKRNDCLGCGRCADLCP 65
Query: 49 ----------------FCDTDFVGIQGTKGG-------RYNVDQLADLIEEQWITGEKEG 85
CD G Y++D++ I++ + G
Sbjct: 66 RGAIRAESGPALLDRALCDACGRCAGACPGKALLMAGREYSLDEVLVRIKKDMLFYRNSG 125
Query: 86 RYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEP 124
L+GGE L Q V L G A+ET+G
Sbjct: 126 GGVTLSGGEVLSQHAFAVELCGRCAALGIHTAIETSGFAPY 166
>gi|34498973|ref|NP_903188.1| molybdenum cofactor biosynthesis protein A [Chromobacterium
violaceum ATCC 12472]
gi|34104822|gb|AAQ61179.1| molybdenum cofactor biosynthesis protein A [Chromobacterium
violaceum ATCC 12472]
Length = 324
Score = 39.1 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR +C +C D++ ++ G R LTGGEPLL+ +
Sbjct: 19 DRCDLRCSYCLPKGFKHFEEPENWLTFDEIERVVAAFARLG---TRRVRLTGGEPLLRRN 75
Query: 101 VPLIQALNKR--GF-EIAVETNGTI-------EPPQGIDWICV---SPKAGCDLKIKGGQ 147
+P + A G ++++ TNGT G+ I + S + C +I G
Sbjct: 76 LPQLAARLSALPGLDDLSLTTNGTQLSRQAAELHAAGVRRINLSLDSLRRDCVEEITGSD 135
Query: 148 ELKLVFPQVNVSPEN-YIGFDFERFSLQPMDGPFLEENTNLAISY 191
L V + + + + +++ ++ +E T I +
Sbjct: 136 SLPKVLDGLMAAKKAGFAPIKINMVAMRGVNEQDIEAMTAFCIEH 180
>gi|170021661|ref|YP_001726615.1| radical SAM domain-containing protein [Escherichia coli ATCC 8739]
gi|188495827|ref|ZP_03003097.1| radical SAM domain protein [Escherichia coli 53638]
gi|254037390|ref|ZP_04871467.1| radical SAM domain-containing protein [Escherichia sp. 1_1_43]
gi|169756589|gb|ACA79288.1| Radical SAM domain protein [Escherichia coli ATCC 8739]
gi|188491026|gb|EDU66129.1| radical SAM domain protein [Escherichia coli 53638]
gi|226840496|gb|EEH72498.1| radical SAM domain-containing protein [Escherichia sp. 1_1_43]
gi|323935172|gb|EGB31535.1| radical SAM superfamily protein [Escherichia coli E1520]
Length = 287
Score = 39.1 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD-RLSAQCRFC---------------DTD 53
F + G G R+A+F GCNL + +C C D
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNHCGECVPQCPHQALQIVDGK 68
Query: 54 FVG-----------------IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
V +VD++ + + + E ++GGE
Sbjct: 69 VVWNAAVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|330821990|ref|YP_004350852.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
gladioli BSR3]
gi|327373985|gb|AEA65340.1| Pyrroloquinoline quinone biosynthesis protein PqqE [Burkholderia
gladioli BSR3]
Length = 398
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 20/174 (11%)
Query: 33 NLWSGREQD-RLSAQCRFCDT--DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R QC +C DF G AD +
Sbjct: 32 PLWLLAEVTYRCPLQCPYCSNPLDFARQGEELGT-------ADWVRVMGEARAMGAAQIG 84
Query: 90 LTGGEPLLQVDVPLIQA-LNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCD 140
+GGEPL++ D+P + A + G+ + T+G G+D I +S ++ +
Sbjct: 85 FSGGEPLVRPDLPELIAEARRLGYYTNLITSGIGLDEAKLDAFERAGLDHIQISFQSSDE 144
Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
F +S + L + + ++ + I C
Sbjct: 145 QVNNMLAGSDKAFAH-KLSMARAVKAHGYPMVLNFVTHRYNIDHIDRIIELCIA 197
>gi|323701817|ref|ZP_08113487.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
gi|323533121|gb|EGB22990.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
Length = 389
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CR C + K + ++ I++ E + + +
Sbjct: 47 CNLK-----------CRHC---YSESDSKKYNELSTEEAKRFIDDL---AEFKVPVLLFS 89
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
GGEPL++ D L+ ++G + TNGT+ PQ
Sbjct: 90 GGEPLVRPDFFELVAYAGEKGIRTTISTNGTLITPQ 125
>gi|331650865|ref|ZP_08351893.1| putative activating enzyme [Escherichia coli M718]
gi|331051319|gb|EGI23368.1| putative activating enzyme [Escherichia coli M718]
Length = 287
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|300087564|ref|YP_003758086.1| radical SAM domain-containing protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527297|gb|ADJ25765.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 392
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL ++ C Q + I+ E + +
Sbjct: 46 CNLHCIHCYASATSNCS-------------PEEVTTGQAKEFIKGL---AEFGVPVLLFS 89
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ L G +A+ TNG
Sbjct: 90 GGEPLLRDDLFELASFARDNGLRVALSTNG 119
>gi|260871103|ref|YP_003237505.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O111:H- str. 11128]
gi|257767459|dbj|BAI38954.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli O111:H- str. 11128]
gi|323176283|gb|EFZ61875.1| radical SAM superfamily protein [Escherichia coli 1180]
Length = 287
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|209921845|ref|YP_002295929.1| hypothetical protein ECSE_4654 [Escherichia coli SE11]
gi|293476643|ref|ZP_06665051.1| yjjW protein [Escherichia coli B088]
gi|307313686|ref|ZP_07593305.1| Radical SAM domain protein [Escherichia coli W]
gi|209915104|dbj|BAG80178.1| conserved hypothetical protein [Escherichia coli SE11]
gi|291321096|gb|EFE60538.1| yjjW protein [Escherichia coli B088]
gi|306906509|gb|EFN37022.1| Radical SAM domain protein [Escherichia coli W]
gi|315063682|gb|ADT78009.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli W]
gi|320200505|gb|EFW75091.1| radical activating enzyme [Escherichia coli EC4100B]
gi|323380237|gb|ADX52505.1| Radical SAM domain protein [Escherichia coli KO11]
Length = 287
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|157157888|ref|YP_001465900.1| radical SAM domain-containing protein [Escherichia coli E24377A]
gi|157079918|gb|ABV19626.1| radical SAM domain protein [Escherichia coli E24377A]
Length = 287
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGN 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|67471563|ref|XP_651729.1| radical SAM domain protein [Entamoeba histolytica HM-1:IMSS]
gi|56468501|gb|EAL46342.1| radical SAM domain protein [Entamoeba histolytica HM-1:IMSS]
Length = 376
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 34/98 (34%)
Query: 35 WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
W + +C++C +D V + ++ ++ E GGE
Sbjct: 7 WFLTLTQVCNLRCKYCGSDEVYDTEIEDLNPWPMEINYDLKYLKRISEDSDPIICFYGGE 66
Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
P ++ + E ++TNGT+ +++
Sbjct: 67 PTVRPQIIYQVMDMMPHAEFVLQTNGTLLHTLKPEYVN 104
>gi|327482153|gb|AEA85463.1| radical-activating enzyme [Pseudomonas stutzeri DSM 4166]
Length = 231
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
+L +CR+C + I ++ +E++ E V +G
Sbjct: 21 HLACVLFCQGCGWRCRYCHNPQL-IPACGNEERPWSEILAFLEQRVGLLEA----VVFSG 75
Query: 93 GEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE 123
GEP LQ +P A G+++ + + G
Sbjct: 76 GEPTLQTALPEAIAQVRALGYKVGLHSAGIKP 107
>gi|299136379|ref|ZP_07029563.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp.
MP5ACTX8]
gi|298602503|gb|EFI58657.1| molybdenum cofactor biosynthesis protein A [Acidobacterium sp.
MP5ACTX8]
Length = 349
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
DR + +C +C T G +G +Y+ +AD + LTGGEPLL+
Sbjct: 38 DRCNYRCVYCRT------GEEGAQYSELPIADYARILRVFVSLGIEKIRLTGGEPLLRQG 91
Query: 100 -------DVPLIQALNKRGFEIAVETNGTIEPP-------QGIDWICVSPKAGCDL 141
L A + +IA+ TNG + P G+ I VS A
Sbjct: 92 LLDLIRETAQLRPAFSDAPLDIALTTNGHLLAPLARPLREAGLSRITVSMDAVDPE 147
>gi|229166606|ref|ZP_04294358.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621]
gi|228616860|gb|EEK73933.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus AH621]
Length = 338
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 19/170 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +CR+C + + + + D IE I R +TGGEPLL+
Sbjct: 22 DRCNFRCRYCMPEEIFGRDYSFLSNDKILSFDEIERITRIFVSLGVRKLRITGGEPLLRK 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGGQ-- 147
D+P + G E I + TNG G+ + VS + + +
Sbjct: 82 DLPELIQRLNEIDGVEDIGLTTNGSLLKKFAPDLYKAGLSRVTVSLDSLNEERFSYLNGN 141
Query: 148 --ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
++K V + + E + G E+ +A Y +N
Sbjct: 142 RSKVKTVLAGIQAAAEAGMKIKMNMVV---QKGKNEEDIVQMA-EYFKEN 187
>gi|256810864|ref|YP_003128233.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
fervens AG86]
gi|256794064|gb|ACV24733.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
fervens AG86]
Length = 298
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 28/171 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G G +++ + + + + R ++
Sbjct: 20 CNLN-----------CFYCH--KEGHNSNNGRYMTAEEIGLIAK---TSTKFGVRKVKIS 63
Query: 92 GGEPLLQVDV-PLIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPLL+ D+ +I+ + + I++ TNG G+D + VS
Sbjct: 64 GGEPLLRKDICEIIENIKDEKIKDISLTTNGILLENLADKLKDAGLDRVNVSLDTLNPEL 123
Query: 143 IKGGQEL---KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAIS 190
K + V + + E + F ++ L E
Sbjct: 124 YKKITKFGDVNKVVNGIKRAIEEELTPLKVNFLAMSINIKELPEIMEFCRD 174
>gi|124006585|ref|ZP_01691417.1| MoaA/nifB/pqqE family protein [Microscilla marina ATCC 23134]
gi|123987740|gb|EAY27431.1| MoaA/nifB/pqqE family protein [Microscilla marina ATCC 23134]
Length = 326
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVL 90
CN R +A+C FCD R + + + + ++ +
Sbjct: 10 CN---YYVTYRCNARCGFCD---------IWERPSPYVTLENAQRNFEGLKRLGVKIIDF 57
Query: 91 TGGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
TGGEPLL L++ GF V TNG
Sbjct: 58 TGGEPLLHRQLPELLEMAQNLGFITTVTTNG 88
>gi|74314814|ref|YP_313233.1| putative activating enzyme [Shigella sonnei Ss046]
gi|73858291|gb|AAZ90998.1| putative activating enzyme [Shigella sonnei Ss046]
gi|323166188|gb|EFZ51966.1| radical SAM superfamily protein [Shigella sonnei 53G]
Length = 287
Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 HLTGRDNQQIKRSICLLAER 204
>gi|255659489|ref|ZP_05404898.1| glutamate 5-kinase [Mitsuokella multacida DSM 20544]
gi|260848041|gb|EEX68048.1| glutamate 5-kinase [Mitsuokella multacida DSM 20544]
Length = 287
Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 26/159 (16%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDT---DFVGIQGTKGGRYNVDQLA--DLIEEQWITGE-K 83
GCNL C FC G G G R +D++ +++ E
Sbjct: 74 FGCNLR-----------CPFCQNYTISQAGFDGFAGQRLPLDRVTPKEIVAAAQRLEETS 122
Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL 141
T EPL+ + + L + G + TNG IE + + DL
Sbjct: 123 GNIGVAFTYNEPLVGYEFVYDTARLLKEVGLATVLVTNGQIEKDSWLHLLPYIDAVNIDL 182
Query: 142 KI-------KGGQELKLVFPQVNVSPENYIGFDFERFSL 173
K G +LK + ++ E+ + + +
Sbjct: 183 KGFTQSFYDWIGGDLKTTKAAIEMAAEDGVHVEVTTLVI 221
>gi|134298148|ref|YP_001111644.1| radical SAM domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134050848|gb|ABO48819.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
Length = 286
Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 44/175 (25%), Gaps = 20/175 (11%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G FC + + +L EQ G
Sbjct: 81 GCNLRCG-----------FCQNWQIAHGDPHTLNLKPREAVELALEQRKKG-FPCTGIAY 128
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK--IKGG 146
T EP + + + + G + + TNG + + D+K
Sbjct: 129 TYSEPFMWYEYVYDTSRLAREAGLKNVMVTNGYVREEPLKKLLPFIDAMNIDVKGFTDRY 188
Query: 147 QELKLVFPQVNVSPENYIGFDFERF----SLQPMDGPFLEENTNLAISYCFQNPK 197
V V I L P +E + L NP+
Sbjct: 189 YRESCVGHLEPVKRTVEIAHQECHVELTTLLVPELNDTPDEISELVDWVASLNPE 243
>gi|307353427|ref|YP_003894478.1| molybdenum cofactor biosynthesis protein A [Methanoplanus
petrolearius DSM 11571]
gi|307156660|gb|ADN36040.1| molybdenum cofactor biosynthesis protein A [Methanoplanus
petrolearius DSM 11571]
Length = 294
Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 27/141 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + GG + + L ++ + LT
Sbjct: 23 CNLK-----------CSYC---HREGEKKSGGEISKEDLREI---FSVAELFNINSVKLT 65
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIK 144
GGEPLL+ D+ I ++ + ++ TNG G+ + VS + + K
Sbjct: 66 GGEPLLRKDICEIISMIPESMQSSLTTNGTLLADCAHELKQAGLSRVNVSIDSLNRERYK 125
Query: 145 ---GGQELKLVFPQVNVSPEN 162
G L V ++ + +
Sbjct: 126 EISGVDSLDKVLAGIDAALKE 146
>gi|256829367|ref|YP_003158095.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
baculatum DSM 4028]
gi|256578543|gb|ACU89679.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
baculatum DSM 4028]
Length = 314
Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 25/181 (13%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
SGC + G VD + ++E+ +
Sbjct: 96 SGCPMNCAEACPSQGLI-------------VYGQERTVDDVLSVVEQDAAFYIRSSGGLT 142
Query: 90 LTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPP------QGIDWICVSPK---AG 138
L+GGEPLLQ + L++ +R + AVET G + ++++ K +G
Sbjct: 143 LSGGEPLLQGEFALALLRDARRRRIKTAVETCGMVPWKTLEAAAPYLNYVLYDIKHMDSG 202
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ G ++ ++ + R + P EE + P
Sbjct: 203 IHEEQTGCSNETILENFQKLAALDPDKSILARTPVIPGFN-DSEEAIKAIAQFIKPFPNV 261
Query: 199 R 199
R
Sbjct: 262 R 262
>gi|91203064|emb|CAJ72703.1| similar to moaA/nirJ/pqqE cofactor biosynthesis protein [Candidatus
Kuenenia stuttgartiensis]
Length = 408
Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
CNL + D ++ TK + +D +A+ +
Sbjct: 48 QRCNLKCVHCYSQSK------DIEYPNELSTKEAKAMLDDIAE----------YGAPVIL 91
Query: 90 LTGGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
+GGEPL+ + LI+ +G + TNG
Sbjct: 92 FSGGEPLMRPDLLELIEYAKAQGLRAVISTNG 123
>gi|46114368|ref|XP_383202.1| hypothetical protein FG03026.1 [Gibberella zeae PH-1]
Length = 825
Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D 100
R + C +C + G L+ + V++GGEP +
Sbjct: 636 RCNLACPWCHNGPLVQGDRDG--------VSLLNVFKHLNSSSHKCLVVSGGEPTIHKGL 687
Query: 101 VPLIQALNKRGFEIAVETNGTIE 123
+P ++ L G + +++NGT
Sbjct: 688 LPFLRILKNAGISVKLDSNGTSP 710
>gi|261838000|gb|ACX97766.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori 51]
Length = 319
Score = 39.1 bits (90), Expect = 0.36, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 27/171 (15%)
Query: 47 CRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPL 103
C++C T + + L +++E I ++ + +TGGEPLL+
Sbjct: 25 CQYCMPTTPLNFFDDEE-----LLPLDNVLEFLKIAIDEGIKKIRITGGEPLLRKGLDEF 79
Query: 104 IQALNKRGFEIAVE--TNGT-------IEPPQGIDWICVSPKA-GCDLKIKGGQELKLVF 153
I L+ E+A+ TNG G+ + VS + LKI LK
Sbjct: 80 IAKLHAYNKEVALVLSTNGFLLKKMAKDLKNAGLSQVNVSLDSLKRVLKISQKDALKNTL 139
Query: 154 PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
+ S + + M +E L + Y S+Q
Sbjct: 140 EGIEESLKAGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR-----SIQI 181
>gi|311696028|gb|ADP98901.1| pyrroloquinoline quinone biosynthesis protein PqqE [marine
bacterium HP15]
Length = 378
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q ++ ++ + +
Sbjct: 12 PLWLLAELTYRCPLQCPYCSNPLDFAQTQ--QELTTEEWVSVLRQ---GRTMGAAQLGFS 66
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
GGEPL+ Q LI G+ + T+G
Sbjct: 67 GGEPLVRQDLAELIAEARHLGYYTNLITSG 96
>gi|296130601|ref|YP_003637851.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Cellulomonas flavigena DSM 20109]
gi|296022416|gb|ADG75652.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Cellulomonas flavigena DSM 20109]
Length = 250
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 24/128 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
F GC +C +C + R + +
Sbjct: 52 VATAF--LQGCPW-----------RCTYCHNSAI-----LDTRLPGVVPWSRVADLLRRR 93
Query: 82 EKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSP 135
VL+GGEP V + + + GF + + T G +DW+ +
Sbjct: 94 RGLLDGLVLSGGEPTRQAGVVAAAREVKEAGFLVGLHTAGAYPSRLRELLPYVDWVGLDV 153
Query: 136 KAGCDLKI 143
KA L
Sbjct: 154 KAPARLYQ 161
>gi|160942352|ref|ZP_02089660.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
BAA-613]
gi|158434716|gb|EDP12483.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
BAA-613]
Length = 305
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
KG ++ Q+ +++ T + G L+GGEPL+Q + L+QA +G+ A+ET
Sbjct: 107 KGKTMSIQQVIRELKKDATTYRRSGGGITLSGGEPLMQYEFASELLQACKGQGWNTAIET 166
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
G I D+K G++ K
Sbjct: 167 TGVGSREAIEKVIPYVDTVLLDIKHMDGEQHK 198
>gi|172057088|ref|YP_001813548.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Exiguobacterium sibiricum 255-15]
gi|171989609|gb|ACB60531.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Exiguobacterium sibiricum 255-15]
Length = 152
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 23/106 (21%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF F+GC C C G +V+Q+ +
Sbjct: 12 VDGPGLRT---VVF--FAGCP-----------HHCPGCHNPDSW-AVEGGEDCSVEQVIE 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVET 118
I++ ++GGEP LQ G++I + T
Sbjct: 55 QIQQMGSYR------VTISGGEPFLQQQALSELVHALTGYDIYLFT 94
>gi|288932367|ref|YP_003436427.1| radical SAM protein [Ferroglobus placidus DSM 10642]
gi|288894615|gb|ADC66152.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
Length = 506
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIE 75
C G +R + C +C G Y ++Q+ ++
Sbjct: 76 CPFTCGLCRAHKSHTALLNIVLTNRCNIACWYC----FFYAKKAGYVYEPTIEQIRHMVR 131
Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
LTGGEP L+ D+ +++A+ + G + + TNG
Sbjct: 132 VAKNLKPVGCNAVQLTGGEPTLRDDLVEIVKAIKEEGIDHVQLNTNG 178
>gi|91202835|emb|CAJ72474.1| similar to ribonucleoside triphosphate reductase activating protein
NrdG [Candidatus Kuenenia stuttgartiensis]
Length = 244
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQ 105
C +C + K ++ + +++ V++GGEP + L++
Sbjct: 33 CHYCHAPHLVQTPNKLESIPLESVTKKLQQ----SFGWIDGVVVSGGEPTMYKELGELLK 88
Query: 106 ALNKRGFEIAVETNGTIEP 124
G + ++TNGT
Sbjct: 89 IFKDIGVLVRLDTNGTNPY 107
>gi|82546728|ref|YP_410675.1| activating enzyme [Shigella boydii Sb227]
gi|81248139|gb|ABB68847.1| putative activating enzyme [Shigella boydii Sb227]
Length = 287
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 HLTGRDNQQIKRSICLLAER 204
>gi|298674278|ref|YP_003726028.1| radical SAM domain-containing protein [Methanohalobium evestigatum
Z-7303]
gi|298287266|gb|ADI73232.1| Radical SAM domain protein [Methanohalobium evestigatum Z-7303]
Length = 399
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + D D+ ++ +LI++ E + +
Sbjct: 50 CNLKCAHCYAQSQ------DIDYS-------DELTTNEGKELIDDL---AEFGSPVILFS 93
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
GGEPL+ L++ +G + TNG
Sbjct: 94 GGEPLMRHDLFELVRYARSKGIRAVISTNG 123
>gi|262041082|ref|ZP_06014300.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041532|gb|EEW42585.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 299
Score = 39.1 bits (90), Expect = 0.37, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
G +V+++ + ++ G L+GGEP + + L +A ++ G AVET
Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVETC 160
Query: 120 GTIEP 124
+
Sbjct: 161 LHVPW 165
>gi|327480682|gb|AEA83992.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
stutzeri DSM 4166]
Length = 381
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 27 CRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
R SG +W E + QC FC + + D+ D++ +
Sbjct: 8 LRLDGSGNPVWLLLELTYQCPLQCVFCSNPRNFAD-YRREELSTDEWIDVMAQ---ARAM 63
Query: 84 EGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
+GGEP L+ D+ + A R G+ + T+G
Sbjct: 64 GAVQIGFSGGEPTLRKDLETLVAEADRMGYYTNLITSG 101
>gi|282165058|ref|YP_003357443.1| hypothetical protein MCP_2388 [Methanocella paludicola SANAE]
gi|282157372|dbj|BAI62460.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 398
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C C + + LI+ Y ++T
Sbjct: 69 CNL-----------RCLHC---VTSSGSKDNDELDSQEAFALIDRLADMKVF---YLIIT 111
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEP L+ D + L++ ++ + + V+TNG
Sbjct: 112 GGEPFLRPDILELLRHISTKNMMVKVDTNG 141
>gi|229018791|ref|ZP_04175640.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH1273]
gi|229025035|ref|ZP_04181463.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH1272]
gi|228736241|gb|EEL86808.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH1272]
gi|228742541|gb|EEL92692.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH1273]
Length = 147
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-ASWNVCNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|254303484|ref|ZP_04970842.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323676|gb|EDK88926.1| possible iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 253
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-Q 98
++ + +C FCD F +D + ++E TGGEP L
Sbjct: 29 YEKCNFKCIFCD--FWQRNDIVFKEITLDNFSKVVEFLIKESNA----FKFTGGEPCLNP 82
Query: 99 VDVPLIQALNKRGFEIAVETNGTI 122
++ + G + ++TNG++
Sbjct: 83 DLKEMMNIIKTHGGIVFLDTNGSM 106
>gi|145591136|ref|YP_001153138.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145282904|gb|ABP50486.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 331
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
N++ + +C +C + GR+ L + E+ + + +
Sbjct: 5 NVFQVGVSTTCNGRCVYC--PLTIYRDKWVGRFMEFSLFQRVVEEGVGAGVKYVHLQGW- 61
Query: 93 GEPLLQVDVPLIQALNKRGFEIAVETNG 120
GEPLL + L +R F + TNG
Sbjct: 62 GEPLLHPQFLEMLMLARRHFSVGFTTNG 89
>gi|187927397|ref|YP_001897884.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
pickettii 12J]
gi|187724287|gb|ACD25452.1| coenzyme PQQ biosynthesis protein E [Ralstonia pickettii 12J]
Length = 386
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R C FC + + R + A I+ + +
Sbjct: 17 PLWLLAELTHRCPLHCVFC---YNPVD--FARRRDELSTAQWIDVLRQARQLGAAQLGFS 71
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPLL+ D L+ + GF + T+G
Sbjct: 72 GGEPLLRDDLEELVAEGRQLGFYTNLITSG 101
>gi|317182080|dbj|BAJ59864.1| molybdenum cofactor biosynthesis protein MoaA [Helicobacter pylori
F57]
Length = 330
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 22/167 (13%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICVSPKA-GCDLKIKGGQE 148
I L+ E+A+ TNG G+ + VS + LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKGLKNAGLSRVNVSLDSLKRVLKISQKDA 134
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK + S + + M +E L + Y
Sbjct: 135 LKNTLEGIEESLKVGLKLKLNTVV---MKSVNDDEILEL-LEYAKNR 177
>gi|257091938|ref|YP_003165579.1| Radical SAM domain-containing protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044462|gb|ACV33650.1| Radical SAM domain protein [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 398
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + DTDF G D++ ++++ +L+
Sbjct: 36 CNLTCKHCYSISA------DTDF-------PGELATDEIFVVMDDL---KGFRVPVLILS 79
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPLL+ D+ + + GF + + +NGT+ I I
Sbjct: 80 GGEPLLRPDIFDIARRAKSMGFYVGLSSNGTLIDAANIARI 120
>gi|116754972|ref|YP_844090.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
gi|116666423|gb|ABK15450.1| Radical SAM domain protein [Methanosaeta thermophila PT]
Length = 472
Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 32 CNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
C G + ++ +C C F K ++Q+ +++
Sbjct: 45 CPFSCGLCDNHKTTTLLANIDVTTRCNLSCPICFADASPKKVYEPTMEQIERMLKILREE 104
Query: 81 GEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
+GGEP ++ D+P ++ GF +I + TNG
Sbjct: 105 RPVPCYAVQFSGGEPTVRDDLPEMVALARSMGFTQIQIATNG 146
>gi|292489544|ref|YP_003532432.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora CFBP1430]
gi|292898240|ref|YP_003537609.1| coenzyme PQQ synthesis protein E [Erwinia amylovora ATCC 49946]
gi|291198088|emb|CBJ45191.1| coenzyme PQQ synthesis protein E (pyrroloquinoline quinon
biosynthesis protein E) [Erwinia amylovora ATCC 49946]
gi|291554979|emb|CBA22988.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora CFBP1430]
gi|312173716|emb|CBX81970.1| Coenzyme PQQ synthesis protein E [Erwinia amylovora ATCC BAA-2158]
Length = 382
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + Q D+ ++ +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFARQE--KELTTAQWIDVFKQ---ARAMGAVQIGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GGEPL++ D+P I++ GF + T+G
Sbjct: 66 GGEPLVRNDLPELIRSARDLGFYTNLITSG 95
>gi|157363749|ref|YP_001470516.1| molybdenum cofactor biosynthesis protein A [Thermotoga lettingae
TMO]
gi|157314353|gb|ABV33452.1| molybdenum cofactor biosynthesis protein A [Thermotoga lettingae
TMO]
Length = 309
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C + + ++ Y+ +LI + + E + +TGGEPLL+ D
Sbjct: 18 DRCNHRCFYCTCNNLFLKEENLMTYDE---VNLISQFFY--ELGIKCIRITGGEPLLRND 72
Query: 101 VPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKGGQE--LKL 151
V I F +++ TNG+ G+ + +S + LK
Sbjct: 73 VVRIVKALSSRFTVSMTTNGSKLSQLAKDLKDAGLHSLNISLNSLKQETFYKITHARLKP 132
Query: 152 VFPQVNVSPENYIGFDFERF 171
V ++ + E +
Sbjct: 133 VLAGIDRAIEEKMNVKLNVV 152
>gi|291280509|ref|YP_003497344.1| molybdenum cofactor biosynthesis protein A [Deferribacter
desulfuricans SSM1]
gi|290755211|dbj|BAI81588.1| molybdenum cofactor biosynthesis protein A [Deferribacter
desulfuricans SSM1]
Length = 329
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 18/173 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C++C + + + + +++ G ++ R +TGGEPL++ +
Sbjct: 22 DRCNFRCKYCMPQHNFKMLSHSDILSYEDIIFVVKTLTEVGIEKIR---ITGGEPLVRKN 78
Query: 101 VPLIQAL---NKRGFEIAVETNGTIEPPQGIDWICV----------SPKAGCDLKIKGGQ 147
+ + K ++ + TNG++ G S KA I GG
Sbjct: 79 INYLFERLGGLKNIKDLTLTTNGSLLKKYGKTIFDAGVRRINISLDSLKANRYEYITGGF 138
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200
L + +N + IGFD + ++ + G +E + R
Sbjct: 139 NLSHIIDSINYA--KNIGFDPIKINVVAIKGFNDDEILDFCEFAAENKLNVRF 189
>gi|157146525|ref|YP_001453844.1| hypothetical protein CKO_02286 [Citrobacter koseri ATCC BAA-895]
gi|157083730|gb|ABV13408.1| hypothetical protein CKO_02286 [Citrobacter koseri ATCC BAA-895]
Length = 299
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PL 103
C C T + + G V+++ D + ++ G L+GGEP +Q ++ L
Sbjct: 90 HC--CPTQALTVCGETKR---VEEIMDTVLRDKPFYDRSGGGITLSGGEPFMQPELAAAL 144
Query: 104 IQALNKRGFEIAVETNGTIEP 124
+A + G AVET +
Sbjct: 145 FKASHDAGIHTAVETCLHVPW 165
>gi|18977826|ref|NP_579183.1| hypothetical protein PF1454 [Pyrococcus furiosus DSM 3638]
gi|18893579|gb|AAL81578.1| hypothetical protein PF1454 [Pyrococcus furiosus DSM 3638]
Length = 588
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + +R + C +C F +G ++Q+ ++ TG
Sbjct: 141 NLLNIVLTNRCNLSCWYC--FFYAREGEPVYEPTLEQIRMMLRNAKKENPIGANAVQFTG 198
Query: 93 GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
GEP L+ D+ +I+ + G+ + + T+G
Sbjct: 199 GEPTLRDDLIEIIKIAKEEGYDHVQLNTDG 228
>gi|330008426|ref|ZP_08306239.1| glycyl-radical enzyme activating protein family protein [Klebsiella
sp. MS 92-3]
gi|328535136|gb|EGF61644.1| glycyl-radical enzyme activating protein family protein [Klebsiella
sp. MS 92-3]
Length = 299
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
G +V+++ + ++ G L+GGEP + + L +A ++ G AVET
Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVETC 160
Query: 120 GTIEP 124
+
Sbjct: 161 LHVPW 165
>gi|149173820|ref|ZP_01852449.1| hypothetical protein PM8797T_05265 [Planctomyces maris DSM 8797]
gi|148847350|gb|EDL61684.1| hypothetical protein PM8797T_05265 [Planctomyces maris DSM 8797]
Length = 1051
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 38/195 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ + + + R + L D I E + + +
Sbjct: 91 TAGCNLGCKFCQNWDIS------------KSREIERLSARALPDEIAE--VAAQLGCQSV 136
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGCD 140
T +P++ + + +A + RG + T G I + + ID V KA +
Sbjct: 137 AFTYNDPIIWSEYAIETSKACHARGVKTVAVTAGYITEQARADFFEHIDAANVDLKAFTE 196
Query: 141 LKIKGG--QELKLVFPQVNVSPEN-YIGFDFERFSLQPMDGPFLEENTNLAISYCFQ--- 194
L+ V + + F+ + P E + +
Sbjct: 197 EFYYRITLSHLQPVLDTLKWLKHETDVWFEITNLVI-PQANDNDGEFQQMCDWILNEIGP 255
Query: 195 ---------NPKWRL 200
+P +R+
Sbjct: 256 DVPLHFSAFHPDFRM 270
>gi|78356319|ref|YP_387768.1| radical-activating enzyme [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218724|gb|ABB38073.1| Radical-activating enzyme [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 309
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 37/213 (17%), Positives = 61/213 (28%), Gaps = 57/213 (26%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------------CRFC-- 50
++ G G VF GC L + S + C C
Sbjct: 19 YSVHDGPGIRT---VVF--LKGCPLRCRWCSNPESQRRRIELAYNTGRCLTLTKCVRCVE 73
Query: 51 ------------DT---DFVGIQGTK---------------GGRYNVDQLADLIEEQWIT 80
DT D + G VD++ +++E+ +
Sbjct: 74 VCTMNAITRADDDTISIDRALCEECGMFCAEACPSKALITYGTTRTVDEVLNVVEQDSVF 133
Query: 81 GEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAG 138
+ G L+GGEP Q + L++ +R AVET G +
Sbjct: 134 YARSGGGITLSGGEPFAQPAFALALLREARRRHIHTAVETCGYASWSDMEPALEYVKFVH 193
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
D+K ++ + NV + RF
Sbjct: 194 YDIKSLDDEKHRSATGVSNVRIIENLRNIRSRF 226
>gi|187731719|ref|YP_001883042.1| radical SAM domain-containing protein [Shigella boydii CDC 3083-94]
gi|187428711|gb|ACD07985.1| radical SAM domain protein [Shigella boydii CDC 3083-94]
Length = 287
Score = 39.1 bits (90), Expect = 0.39, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 HLTGRDNQQIKRSICLLAER 204
>gi|302876467|ref|YP_003845100.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|307687137|ref|ZP_07629583.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|302579324|gb|ADL53336.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
Length = 371
Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 52/154 (33%), Gaps = 11/154 (7%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + C C T + Q +IE+ G TGGEPLL+ D+
Sbjct: 52 RCNLACPHCYTAAANSD-QFVPELSTAQCYKIIEDIARLG---VEIIGWTGGEPLLRNDL 107
Query: 102 PLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
+ A G + TNG + S K ++ L P N
Sbjct: 108 EDLIAYAKSFGIRSGLTTNGLLLSES----RAKSLKDAGLEIVQVS--LDGSTPARNAKI 161
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ DFE ++ L NTNLA+ C +
Sbjct: 162 RKCLESDFEIVLNGALNSQKLGMNTNLAMLLCSE 195
>gi|152969415|ref|YP_001334524.1| putative pyruvate formate lyase activating enzyme [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238893884|ref|YP_002918618.1| putative pyruvate formate lyase activating enzyme [Klebsiella
pneumoniae NTUH-K2044]
gi|150954264|gb|ABR76294.1| putative pyruvate formate lyase activating enzyme [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238546200|dbj|BAH62551.1| putative pyruvate formate lyase activating enzyme [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 299
Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
G +V+++ + ++ G L+GGEP + + L +A ++ G AVET
Sbjct: 101 GEEKSVEEIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVETC 160
Query: 120 GTIEP 124
+
Sbjct: 161 LHVPW 165
>gi|331086536|ref|ZP_08335615.1| hypothetical protein HMPREF0987_01918 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410594|gb|EGG90022.1| hypothetical protein HMPREF0987_01918 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 426
Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
R + +CR C D V + T+ N +QL ++ E+ + VL+GGEP+++
Sbjct: 102 RCNLRCRHCCVDAKHVS-EFTEKDELNTEQLKEVFEK---SAALNPEQIVLSGGEPMVRK 157
Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL------KL 151
D L +I++ TNG + I ++ +E K
Sbjct: 158 DFMELLYYLRKHFKNKISLSTNGLLITESNIKYLNNCIDKYDISIDGVDEESCSRIRGKG 217
Query: 152 VFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
VF +V S E + + L M F E + C +
Sbjct: 218 VFKKVIESIELIKKYGDKEIYLSMMFDDFNENLRGEFLQLCKR 260
>gi|85858423|ref|YP_460625.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
gi|85721514|gb|ABC76457.1| radical SAM superfamily protein [Syntrophus aciditrophicus SB]
Length = 397
Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
+ R + +C C + + ++IE+ + +G
Sbjct: 40 PVVVWNMTRRCNLRCIHCYS--SSQNIQYSDEMTTAEAEEMIEDL---AAFGCPVLLFSG 94
Query: 93 GEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
GEPL++ L Q RG + TNG
Sbjct: 95 GEPLMREDLPELAQYAVSRGMRAVLSTNG 123
>gi|182414976|ref|YP_001820042.1| radical SAM domain-containing protein [Opitutus terrae PB90-1]
gi|177842190|gb|ACB76442.1| Radical SAM domain protein [Opitutus terrae PB90-1]
Length = 351
Score = 39.1 bits (90), Expect = 0.40, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL A I+ +G R + D + + +L
Sbjct: 17 CNLRCAMCGQWSPAG---------YIRSGRGRRGHPLTAEDWMRLADEAAAHGIKSILLR 67
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTI 122
GGEP + L++ L+ G I+++TNGT
Sbjct: 68 GGEPFMLPGIQRLLEHLHDLGMFISIDTNGTR 99
>gi|168750984|ref|ZP_02776006.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4113]
gi|168756797|ref|ZP_02781804.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4401]
gi|168766660|ref|ZP_02791667.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4486]
gi|168776643|ref|ZP_02801650.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4196]
gi|168781668|ref|ZP_02806675.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4076]
gi|168797951|ref|ZP_02822958.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC508]
gi|195937651|ref|ZP_03083033.1| putative activating enzyme [Escherichia coli O157:H7 str. EC4024]
gi|208806325|ref|ZP_03248662.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4206]
gi|208813229|ref|ZP_03254558.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4045]
gi|208818949|ref|ZP_03259269.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4042]
gi|209397872|ref|YP_002273900.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4115]
gi|254796375|ref|YP_003081212.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O157:H7 str. TW14359]
gi|187768017|gb|EDU31861.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4196]
gi|188014898|gb|EDU53020.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4113]
gi|189000737|gb|EDU69723.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4076]
gi|189356077|gb|EDU74496.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4401]
gi|189363925|gb|EDU82344.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4486]
gi|189379490|gb|EDU97906.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC508]
gi|208726126|gb|EDZ75727.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4206]
gi|208734506|gb|EDZ83193.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4045]
gi|208739072|gb|EDZ86754.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4042]
gi|209159272|gb|ACI36705.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4115]
gi|209748922|gb|ACI72768.1| putative activating enzyme [Escherichia coli]
gi|209748926|gb|ACI72770.1| putative activating enzyme [Escherichia coli]
gi|254595775|gb|ACT75136.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli O157:H7 str. TW14359]
gi|326345308|gb|EGD69051.1| radical activating enzyme [Escherichia coli O157:H7 str. 1125]
Length = 287
Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQYPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|82779630|ref|YP_405979.1| putative activating enzyme [Shigella dysenteriae Sd197]
gi|309787401|ref|ZP_07682013.1| radical SAM superfamily protein [Shigella dysenteriae 1617]
gi|81243778|gb|ABB64488.1| putative activating enzyme [Shigella dysenteriae Sd197]
gi|308924979|gb|EFP70474.1| radical SAM superfamily protein [Shigella dysenteriae 1617]
Length = 287
Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 74/239 (30%), Gaps = 58/239 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIIDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKR----GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ F V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHFTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCF--QNPKWRL 200
+ + N + I E R + P +L+ LA + + RL
Sbjct: 185 QLTGRDNQQIKRSICLLAELGKLAELRLLVIPGQVDYLQHIEELA-ALIKGLDDVPVRL 242
>gi|307721838|ref|YP_003892978.1| GTP cyclohydrolase subunit MoaA [Sulfurimonas autotrophica DSM
16294]
gi|306979931|gb|ADN09966.1| GTP cyclohydrolase subunit MoaA [Sulfurimonas autotrophica DSM
16294]
Length = 321
Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 24/170 (14%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + +C++C + F + + +L E + ++ + +TGGEPLL+
Sbjct: 19 ERCNFRCQYCMPEKPFSWVPKEN-----LLSFEELFEFMKVAIDEGVKKIRITGGEPLLR 73
Query: 99 VDVPLIQAL---NKRGFEIAVETN-------GTIEPPQGIDWICVSP---KAGCDLKIKG 145
D+ + + ++A+ TN G+ I VS K I G
Sbjct: 74 EDLDKFIKMIYDYEPSIDLAMTTNAFLLKGTAQRLKNAGLKRINVSIDTLKPEVAQAIAG 133
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK V V + + + PM +E + + YC +
Sbjct: 134 KDVLKNVLEGVEEARKVGLKVKVNMV---PMKNMNADEIVD-VLEYCKER 179
>gi|301059499|ref|ZP_07200412.1| radical SAM domain protein [delta proteobacterium NaphS2]
gi|300446394|gb|EFK10246.1| radical SAM domain protein [delta proteobacterium NaphS2]
Length = 381
Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + G + + R
Sbjct: 66 CNLD-----------CHYCYSR--------GRKIPGMTTKTAKDAIDWLQNVGCRVLAYM 106
Query: 92 GGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWI----------CVSPKAGC 139
GGEPL++ D + + + +RGF + + TNG + ID I V G
Sbjct: 107 GGEPLIRKDFIIEITRYAVERGFFVYLPTNGILLDAPFIDEIGKAGVSTINLAVDSVNGF 166
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
D K +K F + + + F ++ + ++ T +A Y
Sbjct: 167 DGIPKSFDRIKPQFEYLVQQEKEHDYIAFFNINITKDNSTDVKALTEIAHEY 218
>gi|229583688|ref|YP_002842189.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
gi|228018737|gb|ACP54144.1| Radical SAM domain protein [Sulfolobus islandicus M.16.27]
Length = 344
Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 49/182 (26%), Gaps = 36/182 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + L + + +
Sbjct: 36 CNLRCRM--------CPF----------WRRKDEKLLSLEEEVLMLKSLERAGVLFMGFE 77
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
GGEPLL+ D+ I + + F ++ TNG + S D +
Sbjct: 78 GGEPLLRRDLEQILEESYKRFYTSLVTNG-----WLLKDRVKSISENLDYLFVSIDGIDE 132
Query: 152 VFPQV----NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ------NPKWRLS 201
V ++ G R L P+ F T + ++S
Sbjct: 133 VHDKIRGISGAFERAVEGIKEARKYL-PVAISF--TITRENMDQVKDVIEFARKLNVKIS 189
Query: 202 VQ 203
+Q
Sbjct: 190 IQ 191
>gi|29899152|gb|AAP03119.1| hypothetical protein [Streptomyces griseochromogenes]
Length = 344
Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
F R + +A C CD R++++ +L+ G
Sbjct: 24 FIRL----------LEACNADCFMCD----FALSRDTFRFSLEDFDELLPRAVEAGVGYI 69
Query: 86 RYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
R+ TGGEPL+ L++ G ++++ TNG +
Sbjct: 70 RF---TGGEPLMHTDVAELVRRGTDAGMKMSIITNGMM 104
>gi|187735294|ref|YP_001877406.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425346|gb|ACD04625.1| Radical SAM domain protein [Akkermansia muciniphila ATCC BAA-835]
Length = 415
Score = 39.1 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL SA+ G + DQ +I++ + + + +
Sbjct: 57 CNLKCVHCYADASAR-------------KFKGELDWDQCCAVIDDL---ADYKVNALLFS 100
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
GGEPL+ + L++ +G ++ + TNGT P+
Sbjct: 101 GGEPLVHPRFMELLERATGKGLKVTISTNGTRITPE 136
>gi|325697841|gb|EGD39725.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
SK160]
Length = 258
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDF--------- 54
IF ++ G G VF GC L +C +C
Sbjct: 8 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQQFRPEPM 51
Query: 55 ----VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
T G +V+++ + + + E+ G L+GGE Q + +++
Sbjct: 52 LDATTKKSITMGEERSVEEIINEVLKDRDFYEESGGGLTLSGGEIFAQFEFAKAILKVAK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET +E + +D I DLK + V N I + F
Sbjct: 112 EKGIHTAIETTAFVEHEKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHYAF 171
Query: 169 ER 170
Sbjct: 172 TH 173
>gi|325290635|ref|YP_004266816.1| glycyl-radical enzyme activating protein family [Syntrophobotulus
glycolicus DSM 8271]
gi|324966036|gb|ADY56815.1| glycyl-radical enzyme activating protein family [Syntrophobotulus
glycolicus DSM 8271]
Length = 304
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 53/195 (27%), Gaps = 48/195 (24%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFCD----------- 51
G G VF GCNL + C+ CD
Sbjct: 25 DGPGIRT---TVF--LKGCNLRCCWCHNPECIDMHPQIQFDDVVCQKCDLCSASCPNGAM 79
Query: 52 -----------------TDFVGIQ--GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
G +L + +++ ++ G ++G
Sbjct: 80 RSCGNIDQTKCVLCGCCVKICPYDALSIVGEWKTSSELLETMKKDRPYYQESGGGVTISG 139
Query: 93 GEPLLQVDVPLIQA--LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GEPLLQ+D L + F +A++T G + C + D+K + K
Sbjct: 140 GEPLLQLDFLHNFLPKLKQENFHVALDTAGCVPFSSLEYAACFADLFLFDVKAFSSEIHK 199
Query: 151 LVFPQVNVSPENYIG 165
N +
Sbjct: 200 KYTGADNAVILENLR 214
>gi|224372437|ref|YP_002606809.1| molybdenum cofactor biosynthesis protein A [Nautilia profundicola
AmH]
gi|254811545|sp|B9L851|MOAA_NAUPA RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|223589159|gb|ACM92895.1| molybdenum cofactor biosynthesis protein A [Nautilia profundicola
AmH]
Length = 318
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 20/148 (13%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
R + +C +C +T F RY ++ E + ++ LTGGEPLL+
Sbjct: 20 RCNFRCLYCMPNTPFEWEPHENILRYE-----EMFEFLRLAIDEGINKIRLTGGEPLLRK 74
Query: 100 DVPLIQALN---KRGFEIAVETNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
D+ + + + ++A+ TNG S K KI
Sbjct: 75 DLDVFVKMLHDYRPDLDLALTTNGYYLKEYAKKLKDAGLKRVNMSLDSLKPEVAAKIAQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQ 174
L V ++ + + + +Q
Sbjct: 135 DVLNRVIQGLDEALKVGLKVKLNTVVMQ 162
>gi|332173797|gb|AEE23051.1| molybdenum cofactor biosynthesis protein A [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 322
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 28/143 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN CDT +++++ + G + R +T
Sbjct: 21 CNFSCEYCLPDGYQ----CDTPRDF--------LSLNEIKRIASAFAQLGTSKIR---IT 65
Query: 92 GGEPLLQVDVPLIQALNKRG---FEIAVETNGTIEPPQGIDWICV----------SPKAG 138
GGEP L+ D+P ++A+ TNG P W+ S
Sbjct: 66 GGEPSLRKDLPQAIRACATTPGIKQVAITTNGYKLPEHIDSWVDAGLTSMNISIDSLDPR 125
Query: 139 CDLKIKGGQELKLVFPQVNVSPE 161
I G +L ++ ++ + E
Sbjct: 126 MFASITGHDKLDVILRGIDRAIE 148
>gi|159040681|ref|YP_001539933.1| radical SAM domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157919516|gb|ABW00943.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
Length = 569
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 23/162 (14%)
Query: 30 SGCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
GC G +R + +C C G+ G ++ + ++
Sbjct: 134 GGCPFGCGLCPVHKTNTVLSIIDVTNRCNMKCPVC-FANAGVAGYVYEP-SLADIERMMR 191
Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICV 133
G L+GGEP ++ D+P +++ K GF + V TNG + +
Sbjct: 192 ILRSQGPWAPNALQLSGGEPTVRNDLPEIVRMAKKLGFDHVEVNTNGIRIANDINYYKAL 251
Query: 134 SPKAGCDLKIKGGQELKL----VFPQVNVSPENYIGFDFERF 171
AG + V+ P+ Y +
Sbjct: 252 -LDAGVSTIYLQFDTIDPNNKGVWRHRLYDPKAYAELKKKVI 292
>gi|312885478|ref|ZP_07745117.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
gi|311302058|gb|EFQ79088.1| Radical SAM domain protein [Mucilaginibacter paludis DSM 18603]
Length = 465
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 14/133 (10%)
Query: 31 GCNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G QD ++ +C C T + + G + ++ +++ +
Sbjct: 80 GCPYDCGLCQDHEQHSCLTVIEVTDRCNLSCPTCYAMSSPSYGRHRTLHEIEQMLD-TIV 138
Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKA 137
E + ++GGEP + ++ ++ + + TNG ++ A
Sbjct: 139 ANEGKPDVVQISGGEPTVHPQFFEIMDIAKRKPIKHLMLNTNGIRIAKDEGFVERLATYA 198
Query: 138 GCDLKIKGGQELK 150
K
Sbjct: 199 PDFEVYLQFDSFK 211
>gi|21227839|ref|NP_633761.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
gi|20906251|gb|AAM31433.1| Heme biosynthesis protein [Methanosarcina mazei Go1]
Length = 349
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL CR G ++ I++ G+
Sbjct: 16 TAGCNLNC--------VHCRG-----ASTSSVPEGELTTEEAKHFIDDVVELGK---PIL 59
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQ 126
+L+GGEPL + DV + + G + + TNGT+ P+
Sbjct: 60 ILSGGEPLTRTDVFEIARYGTDAGLRVVLATNGTLLTPE 98
>gi|15645387|ref|NP_207561.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
26695]
gi|3024137|sp|P56414|MOAA_HELPY RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|2313896|gb|AAD07817.1| molybdenum cofactor biosynthesis protein A (moaA) [Helicobacter
pylori 26695]
Length = 321
Score = 39.1 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPATPLNFFD--NEELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGTIEPPQGIDWICV----------SPKAGCDLKIKGG 146
I L+ E+ + TNG + D S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVELVLSTNGFLLKKMAKDLKNAGLAQVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK + S + + + +E L + Y
Sbjct: 135 DALKNTLEGIEESLKVGLKLKLNTVV---IKSVNDDEILEL-LEYAKNR 179
>gi|303239543|ref|ZP_07326069.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302592921|gb|EFL62643.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 289
Score = 39.1 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 16/95 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL C FC + + + L E G
Sbjct: 82 TFGCNLK-----------CSFCQNWSIAHEHPDTYMMTPESLVAKARELEHDGN---IGI 127
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
T EP + + + + G + TNG
Sbjct: 128 AYTYNEPSIWYEFVYATSKLAKEAGLSNVLVTNGF 162
>gi|295099948|emb|CBK89037.1| glycyl-radical enzyme activating protein family [Eubacterium
cylindroides T2-87]
Length = 298
Score = 39.1 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 74/224 (33%)
Query: 8 EIFLTLQGEGGHAGRVAVFCRFSGCNL---WSGREQDRLSA-----------QCRFC--- 50
E F T G G +F GC+L W + + +C C
Sbjct: 8 ERFATHDGPGIRT---TIF--LKGCSLHCPWCANPETWVEYPVLMHDTKKCVRCFACQKN 62
Query: 51 --------DTDFVGIQGT------------------KGGRYNVDQLADLIEEQWITGEKE 84
D +F T G ++++ ++ + +
Sbjct: 63 CPNMAIHFDPEFKWNPQTCQHCNTCVENCPLEALEFSGKSMEIEEIVKIVLKDIDYYKNS 122
Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
++GGE +Q D + L++ L K +A+ET G
Sbjct: 123 QGGVTISGGEAFVQFDALIELLKTLKKHDLHVAIETTGNY-------------------- 162
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTN 186
+ +K P +++ ++ D E+ LQ + G ++
Sbjct: 163 --SNERIKRALPYIDLWLIDFKHIDKEK--LQKVTGGDYDQIME 202
>gi|283131362|dbj|BAI63366.1| putative glycyl-radical activating family protein [Streptococcus
dysgalactiae subsp. equisimilis]
gi|283131422|dbj|BAI63423.1| putative glycyl-radical activating family protein [Streptococcus
dysgalactiae subsp. equisimilis]
gi|323128119|gb|ADX25416.1| glycyl-radical activating family protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 329
Score = 39.1 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 8/140 (5%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G + +L +I E + G L+GGE L Q + + L++A + G AVET
Sbjct: 127 GESKTISELMAIIHEDDAFYDMSGGGVTLSGGECLAQPEGAIALLRACKEDGLNTAVETA 186
Query: 120 GTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSL-QP 175
G + + + D+K K EL V + ++ + R + P
Sbjct: 187 GYVPNKVVMAVAEFTDLFLFDMKHMDSKRHNELTGVGNERILTNLKSLIEAGHRVKIRMP 246
Query: 176 M--DGPFLEENTNLAISYCF 193
M + EE I +
Sbjct: 247 MLKEINDSEEEIRAVIDFLL 266
>gi|153868724|ref|ZP_01998475.1| radical SAM family protein [Beggiatoa sp. PS]
gi|152074695|gb|EDN71526.1| radical SAM family protein [Beggiatoa sp. PS]
Length = 367
Score = 39.1 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
+ +C FC D++ G R +V L + E G K Y GEPLL V
Sbjct: 48 CNHRCTFCAVDYI---GYNPVRLDVALLKKRLPEMGQLGIKSIMYA--GEGEPLLHKEIV 102
Query: 102 PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKGGQELK-LVF 153
++ G ++A TN T + I WI VS AG K F
Sbjct: 103 EIVNLTKNAGIDVAFTTNATIFPKGFIEQALPQISWIKVSINAGTPTTYARIHRTKEKDF 162
Query: 154 PQVNVSPENYIGFDFERFS 172
+V + + + + E
Sbjct: 163 AKVIENLKTAVAYKKEHHL 181
>gi|57642080|ref|YP_184558.1| hypothetical protein TK2145 [Thermococcus kodakarensis KOD1]
gi|57160404|dbj|BAD86334.1| hypothetical protein, conserved, radical SAM superfamily
[Thermococcus kodakarensis KOD1]
Length = 590
Score = 39.1 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C L G +R + C +C F +G ++Q+ ++
Sbjct: 124 CPLDCGLCPRHRSHTNLLNIVLTNRCNLSCWYC--FFYAREGQPIYEPTLEQIRMMLRNA 181
Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
TGGEP L+ D+ +I+ + G+ + + T+G
Sbjct: 182 KKEHPIGANAVQFTGGEPTLRDDLIEIIRIAKEEGYDHVQLNTDG 226
>gi|319938823|ref|ZP_08013187.1| pyruvate formate-lyase 3 [Streptococcus anginosus 1_2_62CV]
gi|319811873|gb|EFW08139.1| pyruvate formate-lyase 3 [Streptococcus anginosus 1_2_62CV]
Length = 258
Score = 39.1 bits (90), Expect = 0.43, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 43/208 (20%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-- 61
IF ++ G G VF GC L +C +C +
Sbjct: 8 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKFKPEPM 51
Query: 62 -----------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
G +V+++ + + E+ G L+GGE Q + +++A
Sbjct: 52 LDASSKKTITMGEEKSVEEIIKEVLKDREFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET ++ + +D + DLK + V N I + F
Sbjct: 112 EKGIHTAIETTAFVDHNKFVDLLQYVDFIYTDLKHYNTINHRKVTGVKNELIIKNIHYAF 171
Query: 169 E-------RFSLQPMDGPFLEENTNLAI 189
R + P LE+ AI
Sbjct: 172 SQQKTIVLRIPVIPSFNDSLEDAEQFAI 199
>gi|301024632|ref|ZP_07188283.1| radical SAM domain protein [Escherichia coli MS 196-1]
gi|299880332|gb|EFI88543.1| radical SAM domain protein [Escherichia coli MS 196-1]
Length = 287
Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|260596662|ref|YP_003209233.1| pyrroloquinoline quinone biosynthesis protein PqqE [Cronobacter
turicensis z3032]
gi|260215839|emb|CBA28321.1| Coenzyme PQQ synthesis protein E [Cronobacter turicensis z3032]
Length = 378
Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C Q D+ + +
Sbjct: 10 PLWLLAELTYRCPLQCPYCSNPLDFAAQEN--ELTTAQWIDVFRQ---ARAMGAVQLGFS 64
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPL++ D+P LI A GF + T+G
Sbjct: 65 GGEPLVRKDLPELIAAARGMGFYTNLITSG 94
>gi|168333908|ref|ZP_02692140.1| glycerol dehydratase activating enzyme [Epulopiscium sp. 'N.t.
morphotype B']
Length = 310
Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 22/173 (12%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
+GC L + + + G N+++ I + ++ G
Sbjct: 87 TGC-LECAKACPTEAIR-------------QWGKIINIEECMKEILKDKGYYQRSGGGVT 132
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
++GGEPLLQ + + + G VET+ + + + D+K
Sbjct: 133 ISGGEPLLQSEFVASVFRECQNEGIHTCVETSMYVTWENVAAVLPYADMVIADIKHMKAD 192
Query: 148 ELKLVFPQVNVSPENYIGF----DFERFSLQPMDGPFLE--ENTNLAISYCFQ 194
K N + E P+ E +N +
Sbjct: 193 VHKKFTGVSNKLILENLKKLSQTGKEIILRIPVIPNVNEDADNVEATADFILN 245
>gi|194439267|ref|ZP_03071346.1| radical SAM domain protein [Escherichia coli 101-1]
gi|194421749|gb|EDX37757.1| radical SAM domain protein [Escherichia coli 101-1]
gi|323970828|gb|EGB66080.1| radical SAM superfamily protein [Escherichia coli TA007]
Length = 287
Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|298372109|ref|ZP_06982099.1| coenzyme PQQ synthesis protein E [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275013|gb|EFI16564.1| coenzyme PQQ synthesis protein E [Bacteroidetes oral taxon 274 str.
F0058]
Length = 374
Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 14/92 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CD ++ E VLT
Sbjct: 41 CNLSCLHCGSDCKKDSSVCD-------------MPAKDFFGALDSITDILEPNNTMIVLT 87
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTI 122
GGE LL+ D+ + + L RGF + TNG +
Sbjct: 88 GGEALLRKDIEQIGRQLYIRGFPWGIVTNGMM 119
>gi|120556040|ref|YP_960391.1| radical SAM domain-containing protein [Marinobacter aquaeolei VT8]
gi|120325889|gb|ABM20204.1| Radical SAM domain protein [Marinobacter aquaeolei VT8]
Length = 404
Score = 39.1 bits (90), Expect = 0.44, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+ C + + G ++ ++++ +L+
Sbjct: 41 CNLT-----------CKHCYS--ISADIDFKGELTTQEVYKVMDDL---KAFGVPVLILS 84
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPL++ D+ + GF + + TNG
Sbjct: 85 GGEPLMRPDIFDISHRAKAMGFYVGLSTNG 114
>gi|283131319|dbj|BAI63324.1| putative glycyl-radical activating family protein [Streptococcus
dysgalactiae subsp. equisimilis]
Length = 329
Score = 38.7 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 8/140 (5%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G + +L +I E + G L+GGE L Q + + L++A + G AVET
Sbjct: 127 GESKTISELLAIIHEDDAFYDMSGGGVTLSGGECLAQPEGAIALLRACKEDGLNTAVETA 186
Query: 120 GTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSL-QP 175
G + + + D+K K EL V + ++ + R + P
Sbjct: 187 GYVPNKVVMAVAEFTDLFLFDMKHMDSKRHNELTGVGNERILTNLKSLIEAGHRVKIRMP 246
Query: 176 M--DGPFLEENTNLAISYCF 193
M + EE I +
Sbjct: 247 MLKEINDSEEEIRAVIDFLL 266
>gi|307711018|ref|ZP_07647440.1| pyruvate formate-lyase-activating enzyme [Streptococcus mitis
SK321]
gi|307616980|gb|EFN96158.1| pyruvate formate-lyase-activating enzyme [Streptococcus mitis
SK321]
Length = 258
Score = 38.7 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 31/173 (17%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQKMKPEKMKDAQREKFTL 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q + ++++ + A+ET
Sbjct: 62 VGEEKTVEEIITEVLKDKEFYEESGGGLTLSGGEIFAQFEFAKAILKSAKEHHIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
++ + ID I DLK + K V N I + F +
Sbjct: 122 TAFVDHEKFIDLIQYVDFIYTDLKHYNSIKHKKVTGVFNQMIIKNIHYAFSQH 174
>gi|288559903|ref|YP_003423389.1| radical SAM domain-containing protein [Methanobrevibacter
ruminantium M1]
gi|288542613|gb|ADC46497.1| radical SAM domain-containing protein [Methanobrevibacter
ruminantium M1]
Length = 363
Score = 38.7 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R + C + + D D+ ++ G + VL
Sbjct: 72 CNLHCVGCYSRANNSCS---------DEAPLNQLSADDWEDIFKQARDIG---ISFIVLA 119
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
GGEP+++ DV + +A + TNGT+
Sbjct: 120 GGEPMIREDV-IKKASKFPEILFPIFTNGTM 149
>gi|291534464|emb|CBL07576.1| molybdenum cofactor biosynthesis protein A, bacterial [Roseburia
intestinalis M50/1]
Length = 345
Score = 38.7 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 17/161 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
DR + +C++C + N+ ++++ R+ LTGGEPL++
Sbjct: 18 DRCNLRCKYC----MPGDIETTDMENLLTYEEIVQVTEAAAALGIRHIRLTGGEPLVRRG 73
Query: 100 -DVPLIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVS---PKAGCDLKIKGGQ 147
+ + N G E + + TNG +D + VS ++ G
Sbjct: 74 CVDLVEKIKNVSGIETVGMTTNGVLLAEYAKALKEAELDSVNVSLDTLDETEFQRLTGRD 133
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
EL V +N + E I Q +D + + TN
Sbjct: 134 ELNAVLAGINAAKEAQIPVKINTVHYQHLDWKSILDYTNRV 174
>gi|293408063|ref|ZP_06651903.1| conserved hypothetical protein [Escherichia coli B354]
gi|291472314|gb|EFF14796.1| conserved hypothetical protein [Escherichia coli B354]
Length = 287
Score = 38.7 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIHKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|114567375|ref|YP_754529.1| molybdenum cofactor biosynthesis protein A [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|122317679|sp|Q0AVU6|MOAA_SYNWW RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|114338310|gb|ABI69158.1| GTP cyclohydrolase subunit MoaA [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 326
Score = 38.7 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +CR+C G+ Y++ L ++ I E + LTGGEPL++ +
Sbjct: 18 DRCNLRCRYC-MPETGVD--NLTHYSILSLEEMARLVRIASELGIQKIRLTGGEPLVRRN 74
Query: 101 VPL---IQALNKRGFEIAVETNGTIEPPQGIDWICVSP-KAGCDLKIKGGQELKLVFPQV 156
VP A R +IA+ TNGT+ + + L ++ K + +
Sbjct: 75 VPQLISYIAQIPRIDDIALTTNGTLFAALAEELKTAGLNRINFSLDSLVPEKFKYITRRG 134
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEE---NTNLAISYC 192
++S F + P+ + N + I +
Sbjct: 135 DLSKVKEAIFKALELDMHPVKINMVVIRGFNDDEIIDFV 173
>gi|293417852|ref|ZP_06660474.1| yjjW protein [Escherichia coli B185]
gi|291430570|gb|EFF03568.1| yjjW protein [Escherichia coli B185]
Length = 287
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 69/226 (30%), Gaps = 55/226 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +V+++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVEEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAI 189
+ + N + I E R + P +L+ LA+
Sbjct: 185 QLTGRDNQQIKRSICLLAERGKLAELRLLVIPGQVDYLQHIEELAV 230
>gi|269121870|ref|YP_003310047.1| radical SAM protein [Sebaldella termitidis ATCC 33386]
gi|268615748|gb|ACZ10116.1| Radical SAM domain protein [Sebaldella termitidis ATCC 33386]
Length = 447
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 30 SGCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
+GC G + DR + C C F +++++++ +
Sbjct: 75 AGCPFDCGICESHRQATCCVLLEVTDRCNLNCPVC---FAKAGSEVSSDPSLEKISEWYD 131
Query: 76 EQWITGEKEGRYCVLTGGEPLL-QVDVPLIQALNKRGF-EIAVETNG 120
+G L+GGEP + +I+ +GF + TNG
Sbjct: 132 MLLKSG--GPFNIQLSGGEPTMRHDLDEIIKLGKSKGFDFFQLNTNG 176
>gi|148508185|gb|ABQ75975.1| molybdopterin-based tungsten cofactor biosynthesis protein
[uncultured haloarchaeon]
Length = 572
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC F G G + + + L+ Q I R +
Sbjct: 183 CNLS-----------CSFC---FASS-GPGGTHRSFETVEKLL--QTIVKSGGPRPIQFS 225
Query: 92 GGEPLLQVDVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG---G 146
GGEP ++ D+P +++ + GF I + TNG + +S + ++
Sbjct: 226 GGEPTVRDDLPEIVERAGQMGFEHIQINTNGIELVEKKGYASRLSDAGVTAIYLQFDGLQ 285
Query: 147 QELKLVFPQVNVSPENYIGFDFER 170
E V+++ R
Sbjct: 286 SETYEAIRGVDLADLKREAVKTCR 309
>gi|149011116|ref|ZP_01832421.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP19-BS75]
gi|147764752|gb|EDK71682.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP19-BS75]
Length = 258
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 31/173 (17%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRMKPEKMKDAQREKFTL 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q + ++++ + A+ET
Sbjct: 62 VGEEKTVEEIITEVLKDKEFYEESGGGLTLSGGEIFAQFEFAKAILKSAKEHHIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
++ + ID I DLK + K V N I + F +
Sbjct: 122 TAFVDHEKFIDLIQYVDFIYTDLKHYNSIKHKKVTGVFNQMIIKNIHYAFSQH 174
>gi|134295140|ref|YP_001118875.1| molybdenum cofactor biosynthesis protein A [Burkholderia
vietnamiensis G4]
gi|134138297|gb|ABO54040.1| GTP cyclohydrolase subunit MoaA [Burkholderia vietnamiensis G4]
Length = 370
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRDVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHDGRPLDVTLTTNGSLLARKARALKDAGLTRVTVSLDALDDALFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|323171391|gb|EFZ57038.1| radical SAM superfamily protein [Escherichia coli LT-68]
gi|323181919|gb|EFZ67331.1| radical SAM superfamily protein [Escherichia coli 1357]
gi|323945793|gb|EGB41839.1| radical SAM superfamily protein [Escherichia coli H120]
gi|324118333|gb|EGC12227.1| radical SAM superfamily protein [Escherichia coli E1167]
Length = 287
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|256020010|ref|ZP_05433875.1| putative activating enzyme [Shigella sp. D9]
gi|332103508|gb|EGJ06854.1| radical SAM domain-containing protein [Shigella sp. D9]
Length = 287
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGN 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VLWNAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|218698216|ref|YP_002405883.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
55989]
gi|218354948|emb|CAV02177.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
55989]
Length = 287
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 54/196 (27%), Gaps = 40/196 (20%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLI-EEQWITGEKEGRYCVLTGGEP 95
C CDT +VD++ I + G T P
Sbjct: 69 VAWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIRKAVLFIGGITVSGGEATTQLP 128
Query: 96 LLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+ + R V++NG + + V A DLK G + + +
Sbjct: 129 FVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTG 188
Query: 155 QVNVSPENYIGFDFER 170
+ N + I ER
Sbjct: 189 RDNQQIKRSICLLAER 204
>gi|15804951|ref|NP_290993.1| putative activating enzyme [Escherichia coli O157:H7 EDL933]
gi|15834591|ref|NP_313364.1| activating enzyme [Escherichia coli O157:H7 str. Sakai]
gi|168762730|ref|ZP_02787737.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4501]
gi|168785022|ref|ZP_02810029.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC869]
gi|217325127|ref|ZP_03441211.1| radical SAM domain protein [Escherichia coli O157:H7 str. TW14588]
gi|261226736|ref|ZP_05941017.1| putative activating enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261255140|ref|ZP_05947673.1| putative activating enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|12519406|gb|AAG59560.1|AE005669_4 putative activating enzyme [Escherichia coli O157:H7 str. EDL933]
gi|13364815|dbj|BAB38760.1| putative activating enzyme [Escherichia coli O157:H7 str. Sakai]
gi|189366965|gb|EDU85381.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC4501]
gi|189374932|gb|EDU93348.1| radical SAM domain protein [Escherichia coli O157:H7 str. EC869]
gi|209748918|gb|ACI72766.1| putative activating enzyme [Escherichia coli]
gi|209748920|gb|ACI72767.1| putative activating enzyme [Escherichia coli]
gi|209748924|gb|ACI72769.1| putative activating enzyme [Escherichia coli]
gi|217321348|gb|EEC29772.1| radical SAM domain protein [Escherichia coli O157:H7 str. TW14588]
gi|320190505|gb|EFW65155.1| radical activating enzyme [Escherichia coli O157:H7 str. EC1212]
gi|320638599|gb|EFX08304.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O157:H7 str. G5101]
gi|320643888|gb|EFX13008.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O157:H- str. 493-89]
gi|320649046|gb|EFX17628.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O157:H- str. H 2687]
gi|320654564|gb|EFX22576.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660277|gb|EFX27781.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665372|gb|EFX32456.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O157:H7 str. LSU-61]
gi|326346838|gb|EGD70572.1| radical activating enzyme [Escherichia coli O157:H7 str. 1044]
Length = 287
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|310827624|ref|YP_003959981.1| glutamate 5-kinase [Eubacterium limosum KIST612]
gi|308739358|gb|ADO37018.1| glutamate 5-kinase [Eubacterium limosum KIST612]
Length = 274
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 23/176 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEGRYC 88
GCNL FC + + G + LAD E EK
Sbjct: 69 GCNLRC-----------SFCQNSSISMNGLDNRTIQVTPEMLADKAESL---KEKGNIGL 114
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T EPL+ + ++++G + V TNG I + DLK
Sbjct: 115 AYTYNEPLIGYEFVRDCATLIHEKGMKNVVVTNGNICSNYFEALFPLIDAMNIDLKAFNE 174
Query: 147 QELKLVFPQVNVSPENY-IGFDFERF----SLQPMDGPFLEENTNLAISYCFQNPK 197
++V + N + + + P + E LA NP+
Sbjct: 175 SFYEVVSGDFSTVKTNIRLAAEHCHVEVTTLIIPGENDSDAEMDALAEWLAGINPE 230
>gi|119871542|ref|YP_929549.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
4184]
gi|119672950|gb|ABL87206.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
Length = 360
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 18 GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
+ G A+ GCN C +C + + GRY + E
Sbjct: 88 FYPGTSAMTISTWGCNFP-----------CAWCQNWHISKVASPVGRYVQPE-----EVV 131
Query: 78 WITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGT 121
E ++ EP L + L + G ++ TNG
Sbjct: 132 KWAVENGDSGVNISFNEPTLLAEYAEDLFKLARAAGLHTSINTNGY 177
>gi|193070595|ref|ZP_03051533.1| radical SAM domain protein [Escherichia coli E110019]
gi|192956078|gb|EDV86543.1| radical SAM domain protein [Escherichia coli E110019]
Length = 287
Score = 38.7 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
LQ V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLQFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|307704101|ref|ZP_07641029.1| pyruvate formate-lyase 3 [Streptococcus mitis SK597]
gi|307622323|gb|EFO01332.1| pyruvate formate-lyase 3 [Streptococcus mitis SK597]
gi|327390663|gb|EGE89003.1| glycyl-radical enzyme activating family protein [Streptococcus
pneumoniae GA04375]
Length = 258
Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 31/173 (17%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRMKPEKMKDAQREKFTL 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q + ++++ + A+ET
Sbjct: 62 VGEEKTVEEIITEVLKDKEFYEESGGGLTLSGGEIFAQFEFAKAILKSAKEHHIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERF 171
++ + +D I DLK + K V N I + F +
Sbjct: 122 TAFVDHEKFVDLIQYVDFIYTDLKHYNSIKHKKVTGVFNQMIIKNIHYAFSQH 174
>gi|326317352|ref|YP_004235024.1| molybdenum cofactor biosynthesis protein A [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323374188|gb|ADX46457.1| molybdenum cofactor biosynthesis protein A [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 386
Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ ++ + R LTGGEPLL+
Sbjct: 55 DRCNFRCSYCMPKEVFGKDYPYLSHGDLLSFEEISRLARVFLAHGVRKIRLTGGEPLLRR 114
Query: 100 DVPL-------IQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
+ ++ R ++ + TNG+ G+ + VS + D +
Sbjct: 115 HLENLVEQLAGLRTTEGRVPDLTLTTNGSLLARKARALRDAGLARLTVSLDSLQDSVFRR 174
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ +V E FER
Sbjct: 175 MNDVDFPVAEVLSGIEAAQAAGFERI 200
>gi|167384757|ref|XP_001737090.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900302|gb|EDR26650.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 376
Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 34/98 (34%)
Query: 35 WSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
W + +C++C +D V + ++ ++ E GGE
Sbjct: 7 WFLTLTQVCNLRCKYCGSDEVYDTEIEDLNPWPMEINYDLKYLNRISEDSDPIVCFYGGE 66
Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
P ++ + E ++TNGT+ ++I
Sbjct: 67 PTVRPQIIYQVMDMMPHAEFVLQTNGTLLHTLKPEYIN 104
>gi|148269247|ref|YP_001243707.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
gi|147734791|gb|ABQ46131.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
Length = 323
Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 22/162 (13%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D 100
R + +C+ C + + +++ +LI + G + GGEPLL
Sbjct: 15 RCNFRCKHC---YCKAGKPHPEELSFEEIKELILDMKELGTWA---LDIVGGEPLLHPQI 68
Query: 101 VPLIQALNKRGFEIAVETNG---TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
+ ++ + G + + TNG T E Q I G L+ + V N
Sbjct: 69 LDILAFGKEVGQRLMINTNGSLATKEMVQKIKKANPDVLVGVSLEGPEPETNDFVRGIGN 128
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
+F + E + I WR
Sbjct: 129 FERAVQGIKNF------------VSEGLQITILNVINRRNWR 158
>gi|315231725|ref|YP_004072161.1| hypothetical protein TERMP_01964 [Thermococcus barophilus MP]
gi|315184753|gb|ADT84938.1| hypothetical protein TERMP_01964 [Thermococcus barophilus MP]
Length = 583
Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + +R + C +C F +G ++Q+ ++ TG
Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNAKRENPIGATAVQFTG 196
Query: 93 GEP-LLQVDVPLIQALNKRGF-EIAVETNG 120
GEP L + + +I+ + G+ I + T+G
Sbjct: 197 GEPTLREDLIEIIRIAKEEGYDHIQLNTDG 226
>gi|145591292|ref|YP_001153294.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145283060|gb|ABP50642.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 364
Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 21/146 (14%)
Query: 18 GHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEE 76
+ G A+ GCNL +C + + G +++
Sbjct: 92 FYPGTSALTISTWGCNLPCA-----------WCQNWHLSKVASPVGAFVPPERVV----- 135
Query: 77 QWITGEKEGRYCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
E ++ EP L++ + + RG ++ TNG + + + + +
Sbjct: 136 -GWAVENGDSGINISFNEPTLLVEYAEDVFKLARARGLHASINTNGYL-TEEAVRRLAEA 193
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSP 160
G ++ IKGG+E + ++
Sbjct: 194 GMEGMNVDIKGGRETYRRWLAADLDK 219
>gi|23097891|ref|NP_691357.1| hypothetical protein OB0436 [Oceanobacillus iheyensis HTE831]
gi|22776115|dbj|BAC12392.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 376
Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 32/165 (19%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--- 99
+ +C C + + + D L + E+ + R +TGGEP++
Sbjct: 42 CNMRCAHCAVGYTL------QQMDPDALPMELIEKRLDEIPHLRTLSITGGEPMMNKKSV 95
Query: 100 ---DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
+PL++ ++RG + + +N T+ + + + +E
Sbjct: 96 RQYVLPLLKYAHERGIKTQMNSNLTLPYNRYEEIVPYLDVLHISHNWGTVEE-------- 147
Query: 157 NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
F F+L MD EEN +N + RLS
Sbjct: 148 ---------FAETGFAL--MDRKPSEENRAKYFDRMVENAQ-RLS 180
>gi|313668419|ref|YP_004048703.1| hypothetical protein NLA_11150 [Neisseria lactamica ST-640]
gi|313005881|emb|CBN87337.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 369
Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 26/136 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGT--KGGRYNVDQLADLIEEQWITGEKEGRYCV 89
CNL C +C +G G + + D+ + + +G+
Sbjct: 13 CNLN-----------CTYCYVYHLGDDGWKDNPKLLSEKSIDDIEKSLFDLYSFQGKSFA 61
Query: 90 LT--GGEPLLQVDVPLIQALNKRGFE------IAVETNG-----TIEPPQGIDWICVSPK 136
+ GGEP L L L K ++++TNG + + +S
Sbjct: 62 IVLHGGEPFLLPKHRLEYLLKKLRHRLPEYTTVSIQTNGLLLTEELITLCYTYNVTISIS 121
Query: 137 AGCDLKIKGGQELKLV 152
I L +
Sbjct: 122 LDGPQNINDEMRLDHL 137
>gi|323700676|ref|ZP_08112588.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio sp. ND132]
gi|323460608|gb|EGB16473.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio desulfuricans ND132]
Length = 227
Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GR + GCNL +C C + + +
Sbjct: 24 GRTSCIIFLGGCNL-----------RCPTCHNFQLAWDMHSLPVIDA----QRVRAYLRD 68
Query: 81 GEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIE 123
++GGEP V L + K G + +++NG
Sbjct: 69 RAGWLDGVTISGGEPTTVPGVGELAFEIRKTGLPVKMDSNGMRP 112
>gi|312137493|ref|YP_004004830.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
gi|311225212|gb|ADP78068.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
Length = 231
Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 33 NLWSGREQDRLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
+ + L A+C F C + + + +V++L + ++ + + ++
Sbjct: 5 HFSVSDKITILVARCNFKC--KYCFFKPFREIDIDVEKLIKITKKLR--KQFKLNKIMIA 60
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEP 124
GGEP L+ D+P ++ L + F + + TNG
Sbjct: 61 GGEPTLEKDLPEFVKLLKENNFYVIISTNGYYLC 94
>gi|218692767|ref|YP_002400979.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
ED1a]
gi|218430331|emb|CAR11201.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
ED1a]
Length = 287
Score = 38.7 bits (89), Expect = 0.48, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAACEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|237704116|ref|ZP_04534597.1| radical SAM domain-containing protein [Escherichia sp. 3_2_53FAA]
gi|331666206|ref|ZP_08367087.1| putative activating enzyme [Escherichia coli TA271]
gi|331680542|ref|ZP_08381201.1| putative activating enzyme [Escherichia coli H591]
gi|226902028|gb|EEH88287.1| radical SAM domain-containing protein [Escherichia sp. 3_2_53FAA]
gi|323955174|gb|EGB50947.1| radical SAM superfamily protein [Escherichia coli H263]
gi|331066417|gb|EGI38294.1| putative activating enzyme [Escherichia coli TA271]
gi|331072005|gb|EGI43341.1| putative activating enzyme [Escherichia coli H591]
Length = 287
Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|195542037|gb|ACF98232.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium
6254]
Length = 400
Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + G ++ ++++ +L+
Sbjct: 45 CNLTCKHCYALSA-------------DHHYPGELEEHEMLAVLQDL---KSYGVPALILS 88
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
GGEPLL PL GF + + TNG
Sbjct: 89 GGEPLLSPHLWPLADRAKALGFHLGLSTNG 118
>gi|268324243|emb|CBH37831.1| conserved hypothetical protein, radical SAM superfamily [uncultured
archaeon]
Length = 282
Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 20/106 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ ++ SGCN C F + G V++L + I
Sbjct: 22 KPHIWITLSGCNFKCK--------GC------FSIARDPVGESMTVNELINFIRRSNWIY 67
Query: 82 EK--EGRYCVLTGGEPLLQVDVPLIQALNKRG----FEIAVETNGT 121
++TGGEP L + L + I + TNG
Sbjct: 68 SNITPLEGAIITGGEPTLDKNFLLDLVRKLKTKVDVKHITLSTNGY 113
>gi|255026325|ref|ZP_05298311.1| pyruvate formate-lyase 1-activating enzyme [Listeria monocytogenes
FSL J2-003]
Length = 248
Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 18/110 (16%)
Query: 27 CRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
RF GC +C+FC GT R + + + + +
Sbjct: 22 IRFIVFMQGC-----------LLRCQFCHNPDTWKIGTGTER-SAQDVFNEAIKYKEFWD 69
Query: 83 KEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
G ++GGEPLLQ + G +++ G
Sbjct: 70 ASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVHTTIDSCGGCFTRDPEFI 119
>gi|145591814|ref|YP_001153816.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145283582|gb|ABP51164.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 254
Score = 38.7 bits (89), Expect = 0.49, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G + T FV + G ++A+ + + I + R +
Sbjct: 46 GCNLRCGMCWAWRN-------TSFVL---SSGEWLAPAEVAERL--RGIAERRGFRQVRV 93
Query: 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+GGEPL+ L + + VETNG
Sbjct: 94 SGGEPLIAPVHLLQVIDSFAKYTFIVETNG 123
>gi|222110904|ref|YP_002553168.1| radical sam domain-containing protein [Acidovorax ebreus TPSY]
gi|221730348|gb|ACM33168.1| Radical SAM domain protein [Acidovorax ebreus TPSY]
Length = 406
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + D D+ G ++ ++ ++++ +L+
Sbjct: 41 CNLTCKHCYALSA------DHDYA-------GELSLQEVYTVMDDL---KAFGVPALILS 84
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ + GF + TNG
Sbjct: 85 GGEPLLRPDLFEIAARARDLGFYTGLSTNG 114
>gi|148729628|gb|ABR09216.1| PqqE [Enterobacter cloacae]
Length = 193
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R QC +C T+ + Q ++ + G + +GGEPLL+ D+
Sbjct: 7 RCPLQCPYCSNPLDF--STQAQELSTAQWIEVFRQARAMGSVQ---LGFSGGEPLLRKDL 61
Query: 102 P-LIQALNKRGFEIAVETNG 120
P LI A GF + T+G
Sbjct: 62 PELIAAARGMGFYTNLITSG 81
>gi|121594266|ref|YP_986162.1| radical SAM domain-containing protein [Acidovorax sp. JS42]
gi|120606346|gb|ABM42086.1| Radical SAM domain protein [Acidovorax sp. JS42]
Length = 406
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + D D+ G ++ ++ ++++ +L+
Sbjct: 41 CNLTCKHCYALSA------DHDYA-------GELSLQEVYTVMDDL---KAFGVPALILS 84
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ + GF + TNG
Sbjct: 85 GGEPLLRPDLFEIAARARDLGFYTGLSTNG 114
>gi|86610224|ref|YP_478986.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|123724410|sp|Q2JI46|MOAA_SYNJB RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|86558766|gb|ABD03723.1| molybdenum cofactor biosynthesis protein MoaA [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 325
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 20/175 (11%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
DR + +C++C D + R +++ L+ E ++ + LTGGEPLL+
Sbjct: 13 DRCNFRCQYCMPDEAELTW-LQAPERLTDEEILTLVREVFLPLGIDC--FRLTGGEPLLR 69
Query: 99 VDVPL--IQALNKRGFE-IAVETNGTI-------EPPQGIDWICVSPKAGCDLKIK---G 145
+ + G +A+ TNG G+ I +S + + G
Sbjct: 70 PGLEHLIRALCSLPGVRDVALTTNGFNLSQKAQLLYEAGLRRINISFDSLNPETFRLITG 129
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRL 200
+ V+ + V+ + +GFD + ++ + G E +LA + R
Sbjct: 130 RDRWRQVWAGIQVA--HQVGFDPLKLNVVVIPGLNESEVEDLAALTLERQWHVRF 182
>gi|86742059|ref|YP_482459.1| radical SAM family protein [Frankia sp. CcI3]
gi|86568921|gb|ABD12730.1| Radical SAM [Frankia sp. CcI3]
Length = 640
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+A C C +Q + R D LA IE R+ L GGE +L +
Sbjct: 71 CNATCAHC-----LVQSSPHRRERFD-LATAIEILRTAARFGRRFLDLGGGEIMLHPEDT 124
Query: 103 LI--QALNKRGFEIAVETNGTIEPPQGIDWICVS 134
+A G+ +++ TNG VS
Sbjct: 125 CALARAATDLGYYVSLNTNGFWARTPERARTLVS 158
>gi|291285816|ref|YP_003502634.1| hypothetical protein G2583_5239 [Escherichia coli O55:H7 str.
CB9615]
gi|290765689|gb|ADD59650.1| Putative activating enzyme [Escherichia coli O55:H7 str. CB9615]
Length = 287
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|261400665|ref|ZP_05986790.1| putative radical SAM [Neisseria lactamica ATCC 23970]
gi|269209574|gb|EEZ76029.1| putative radical SAM [Neisseria lactamica ATCC 23970]
Length = 369
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 26/136 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGT--KGGRYNVDQLADLIEEQWITGEKEGRYCV 89
CNL C +C +G G + + D+ + + +G+
Sbjct: 13 CNLN-----------CTYCYVYHLGDDGWKDNPKLLSEKSIDDIEKSLFDLYSFQGKSFA 61
Query: 90 LT--GGEPLLQVDVPLIQALNKRGFE------IAVETNG-----TIEPPQGIDWICVSPK 136
+ GGEP L L L K ++++TNG + + +S
Sbjct: 62 IVLHGGEPFLLPKHRLEYLLKKLRHRLPEYTTVSIQTNGLLLTEELITLCYTYNVTISIS 121
Query: 137 AGCDLKIKGGQELKLV 152
I L +
Sbjct: 122 LDGPQNINDEMRLDHL 137
>gi|160887003|ref|ZP_02068006.1| hypothetical protein BACOVA_05017 [Bacteroides ovatus ATCC 8483]
gi|156107414|gb|EDO09159.1| hypothetical protein BACOVA_05017 [Bacteroides ovatus ATCC 8483]
Length = 446
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
+ +C +C + GT + VD+ I + R L GGEPLL+ +
Sbjct: 107 DCNFRCPYCFEKDIQKDGTAFTKEMVDKAYQAILQIAPDERLRSRSITLYGGEPLLKRNK 166
Query: 102 P----LIQALNKRGFEIAVETNGT 121
+I+ + GF+ + +NG
Sbjct: 167 NIISYIIEQGKELGFKFSAISNGY 190
>gi|148983648|ref|ZP_01816967.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP3-BS71]
gi|148987986|ref|ZP_01819449.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP6-BS73]
gi|148992826|ref|ZP_01822469.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP9-BS68]
gi|148996669|ref|ZP_01824387.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP11-BS70]
gi|149001642|ref|ZP_01826615.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP14-BS69]
gi|149017939|ref|ZP_01834398.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP23-BS72]
gi|168484628|ref|ZP_02709580.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC1873-00]
gi|168485986|ref|ZP_02710494.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC1087-00]
gi|168489722|ref|ZP_02713921.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae SP195]
gi|168492200|ref|ZP_02716343.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC0288-04]
gi|168576326|ref|ZP_02722209.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae MLV-016]
gi|169832386|ref|YP_001693774.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae Hungary19A-6]
gi|194398184|ref|YP_002036947.1| glycyl-radical enzyme activating family protein [Streptococcus
pneumoniae G54]
gi|221231148|ref|YP_002510300.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pneumoniae ATCC 700669]
gi|225856005|ref|YP_002737516.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae P1031]
gi|225858097|ref|YP_002739607.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae 70585]
gi|237649686|ref|ZP_04523938.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CCRI 1974]
gi|237821384|ref|ZP_04597229.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CCRI 1974M2]
gi|298256026|ref|ZP_06979612.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|298502063|ref|YP_003724003.1| [formate-C-acetyltransferase]-activating enzyme [Streptococcus
pneumoniae TCH8431/19A]
gi|307066923|ref|YP_003875889.1| pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae
AP200]
gi|307126463|ref|YP_003878494.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae 670-6B]
gi|147757244|gb|EDK64283.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP11-BS70]
gi|147760100|gb|EDK67089.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP14-BS69]
gi|147923795|gb|EDK74907.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP3-BS71]
gi|147926450|gb|EDK77523.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP6-BS73]
gi|147928552|gb|EDK79567.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP9-BS68]
gi|147931503|gb|EDK82481.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP23-BS72]
gi|168994888|gb|ACA35500.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae Hungary19A-6]
gi|172042172|gb|EDT50218.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC1873-00]
gi|183570859|gb|EDT91387.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC1087-00]
gi|183571786|gb|EDT92314.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae SP195]
gi|183573571|gb|EDT94099.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC0288-04]
gi|183577818|gb|EDT98346.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae MLV-016]
gi|194357851|gb|ACF56299.1| glycyl-radical enzyme activating protein family [Streptococcus
pneumoniae G54]
gi|220673608|emb|CAR68095.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pneumoniae ATCC 700669]
gi|225721541|gb|ACO17395.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae 70585]
gi|225724908|gb|ACO20760.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae P1031]
gi|298237658|gb|ADI68789.1| possible [formate-C-acetyltransferase]-activating enzyme
[Streptococcus pneumoniae TCH8431/19A]
gi|301793515|emb|CBW35890.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pneumoniae INV104]
gi|301799392|emb|CBW31928.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pneumoniae OXC141]
gi|306408460|gb|ADM83887.1| Pyruvate-formate lyase-activating enzyme [Streptococcus pneumoniae
AP200]
gi|306483525|gb|ADM90394.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae 670-6B]
gi|332075912|gb|EGI86379.1| glycyl-radical enzyme activating family protein [Streptococcus
pneumoniae GA17570]
gi|332077547|gb|EGI88008.1| glycyl-radical enzyme activating family protein [Streptococcus
pneumoniae GA41301]
Length = 258
Score = 38.7 bits (89), Expect = 0.50, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRMKPEKMKDAQREKFTL 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q + ++++ + A+ET
Sbjct: 62 VGEEKTVEEIITEVLKDKEFYEESGGGLTLSGGEIFAQFEFAKAILKSAKEHHIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
++ + ID I DLK + K V N I + F +
Sbjct: 122 TAFVDHEKFIDLIQYVDFIYTDLKHYNSIKHKKVTGVFNQMIIKNIHYAFSQ 173
>gi|328543729|ref|YP_004303838.1| Metallo cofactor biosynthesis protein, conjectural [Polymorphum
gilvum SL003B-26A1]
gi|326413473|gb|ADZ70536.1| Metallo cofactor biosynthesis protein, conjectural [Polymorphum
gilvum SL003B-26A1]
Length = 348
Score = 38.7 bits (89), Expect = 0.51, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
R + +CR C + R ++ D+I++ + TGGEPLL
Sbjct: 19 RCNIECRHC---GIESGPRNRARMTLELARDVIQQAAEL-DPPATTIAFTGGEPLLYPRE 74
Query: 101 -VPLIQALNKRGFEIAVETNGTI 122
L+ + G + TNG
Sbjct: 75 TEALLDLAHGLGLSTRIVTNGFW 97
>gi|302866329|ref|YP_003834966.1| radical SAM domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|302569188|gb|ADL45390.1| Radical SAM domain protein [Micromonospora aurantiaca ATCC 27029]
Length = 303
Score = 38.7 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VD 100
R + +C FC G + + DL+ V TGGEPLL+
Sbjct: 30 RCNLRCTFC----WGPDHDIRDGLDTAEWKDLLSRF---RAGGTSAVVFTGGEPLLRRDI 82
Query: 101 VPLIQALNKRGFEIAVETNG 120
L++ ++ GF + + TNG
Sbjct: 83 GGLLRHASEEGFRVTLSTNG 102
>gi|225025860|ref|ZP_03715052.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
gi|224956811|gb|EEG38020.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
Length = 307
Score = 38.7 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 4/123 (3%)
Query: 33 NLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
N+ + + A C C D + G V++L + + + K G ++
Sbjct: 80 NVPGKIDHTKCIA-CGKCIDVCYHRALEMSGKWMTVEELMGELYKDRVIYRKSGGGITVS 138
Query: 92 GGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
GGE ++Q + L++A G+ A+ET G + + D+K +
Sbjct: 139 GGEAMVQHEFLLELLKACKSFGWTTAIETTGMASEEVIKEIVPWLDVVMMDIKHIDPEVH 198
Query: 150 KLV 152
K
Sbjct: 199 KEY 201
>gi|189462269|ref|ZP_03011054.1| hypothetical protein BACCOP_02955 [Bacteroides coprocola DSM 17136]
gi|189431036|gb|EDV00021.1| hypothetical protein BACCOP_02955 [Bacteroides coprocola DSM 17136]
Length = 299
Score = 38.7 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIE 123
+ +++ + + + V+TGGEPL++ +A++ +GF + TNG
Sbjct: 1 MPKEDFLRVLDNIALHTDPHHVFVVITGGEPLMREDLEECGKAIHDKGFPWGMVTNGLAM 60
Query: 124 PPQ 126
P+
Sbjct: 61 TPE 63
>gi|228909411|ref|ZP_04073236.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis IBL 200]
gi|228850188|gb|EEM95017.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis IBL 200]
Length = 148
Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 10 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 52
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 53 EI------ASNPLTDVTFSGGDPFFQ 72
>gi|15669011|ref|NP_247815.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
jannaschii DSM 2661]
gi|2496130|sp|Q58234|MOAA_METJA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|1591511|gb|AAB98823.1| molybdenum cofactor biosynthesis protein (moaA) [Methanocaldococcus
jannaschii DSM 2661]
Length = 298
Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 26/172 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G +++ + + + + + ++
Sbjct: 20 CNLQ-----------CFYCH--REGHDSNNDRYMTPEEIGIIAK---TSTKFGVKKIKIS 63
Query: 92 GGEPLLQVD-VPLIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPLL+ D +I+ + + I++ TNG G++ + VS
Sbjct: 64 GGEPLLRKDVCEIIENIKDERIKDISLTTNGILLENLAEKLKDAGLNRVNVSLDTLNPEL 123
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K + V +V + I + + ++ + +C
Sbjct: 124 YKKITKFGDV-ERVINGIKKAIDVSLTPLKVNFLAMSINIKDLPDIMEFCRD 174
>gi|295100160|emb|CBK89249.1| glycyl-radical enzyme activating protein family [Eubacterium
cylindroides T2-87]
Length = 300
Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 47/174 (27%), Gaps = 53/174 (30%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------- 46
I EI F G G R VF GC L + S +
Sbjct: 5 IMEIERFAIHDGPGI---RSVVF--LQGCPLRCPWCANPESQEIKPQLMYNEEKCVRCGT 59
Query: 47 -----------------------CRFCDTDF----VGIQGTKGGRYNVDQLADLIEEQWI 79
C C T G G ++D + + +
Sbjct: 60 CVRNCPQHAIKIENFKLVFDRDACIHCKTCENNCPAGAINFIGDAVSIDDIVTEVLKDKP 119
Query: 80 TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
E+ ++GGEP +Q L+ + +AVET G D I
Sbjct: 120 FYEESNGGVTISGGEPFVQYNALKALLNKFFEEDISVAVETTGDTHWKNIEDLI 173
>gi|206969024|ref|ZP_03229979.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus AH1134]
gi|206736065|gb|EDZ53223.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus AH1134]
Length = 150
Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|170726599|ref|YP_001760625.1| pyrroloquinoline quinone biosynthesis protein PqqE [Shewanella
woodyi ATCC 51908]
gi|169811946|gb|ACA86530.1| coenzyme PQQ biosynthesis protein E [Shewanella woodyi ATCC 51908]
Length = 371
Score = 38.7 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E C +C G R + ++ E +
Sbjct: 10 PLWLLAELTYECPLHCAYC-----SNPTDLGKREDELTTEAWLDVLSQARELGSVQLGFS 64
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GGEPLL+ D+ + ++ K GF + T+G
Sbjct: 65 GGEPLLRKDLEILVEHGRKLGFYTNLITSG 94
>gi|268318084|ref|YP_003291803.1| Radical SAM domain-containing protein [Rhodothermus marinus DSM
4252]
gi|262335618|gb|ACY49415.1| Radical SAM domain protein [Rhodothermus marinus DSM 4252]
Length = 360
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 36/194 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ D T + +A + E R
Sbjct: 82 TAGCNLGCRFCQNW--------DISKSREMDTLADEAAPETIARVAEAL------GCRSV 127
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVSPKAG 138
T +P++ + + + +A ++RG T G + P + + +
Sbjct: 128 AFTYNDPVIFHEYALDVARACHERGIRTVAVTAGYVCPEPRAEFYAHMDAANVDLKAFSE 187
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ---- 194
+ EL V + + L P + E L
Sbjct: 188 RFYRKICAGELAPVLDTLRYIYHETNTWLEITTLLIPGENDSDAELHALTEWIVTNLGPD 247
Query: 195 --------NPKWRL 200
+P W++
Sbjct: 248 VPLHFTAFHPDWKM 261
>gi|228902101|ref|ZP_04066265.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis IBL 4222]
gi|228940686|ref|ZP_04103249.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228953869|ref|ZP_04115908.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|229080806|ref|ZP_04213324.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock4-2]
gi|229191686|ref|ZP_04318665.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 10876]
gi|228591848|gb|EEK49688.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 10876]
gi|228702540|gb|EEL55008.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock4-2]
gi|228805837|gb|EEM52417.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228818930|gb|EEM64992.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228857527|gb|EEN02023.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis IBL 4222]
Length = 147
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|237729279|ref|ZP_04559760.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909008|gb|EEH94926.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 287
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 52/236 (22%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVLHCPHEALNLSAGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C+ CDT + + + D + + ++GGE L
Sbjct: 69 VWWQSDVCQQCDTC-LHMCPQQATPMAQSMSVDEVLQHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKTDPQLQHLTCMVDSNGMLSETGWQKLLPVCDGVMLDLKAWDSTCHRQLT 187
Query: 154 PQVNVSPENYI-------GFDFERFSLQPMDGPFLEENTNLAISYCFQ--NPKWRL 200
+ N + I R + P +L+ LA ++ + + RL
Sbjct: 188 GRDNTLIKQSITFLSGQRKLAELRLLVIPGQEDYLQHIDALA-TFIKRTGDVPVRL 242
>gi|218781694|ref|YP_002433012.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
gi|218763078|gb|ACL05544.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
Length = 394
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +A G +Q +LI++ E + +
Sbjct: 50 CNLKCVHCYAHATA-------------GKAPVEMTTEQGKELIKDL---AEFGSPVMLFS 93
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
GGEPL++ L + G + TNG
Sbjct: 94 GGEPLMREDLPELADFAVQNGMRAVISTNG 123
>gi|94312101|ref|YP_585311.1| radical SAM family protein [Cupriavidus metallidurans CH34]
gi|93355953|gb|ABF10042.1| Heme d1 biosynthesis protein NirJ [Cupriavidus metallidurans CH34]
Length = 387
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + DTDF G T V + D ++ + +L+
Sbjct: 36 CNLNCKHCYSTSA------DTDFKGELSTG----EVMAVLDQLKAARVPA------LILS 79
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ + + GF +++ +NG
Sbjct: 80 GGEPLLRPDLYEIAARARELGFHLSLSSNG 109
>gi|319957346|ref|YP_004168609.1| radical sam domain protein [Nitratifractor salsuginis DSM 16511]
gi|319419750|gb|ADV46860.1| Radical SAM domain protein [Nitratifractor salsuginis DSM 16511]
Length = 376
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
+R + CR C + + + + I E G R+ + +GGEPL++
Sbjct: 29 FTNRCNLACRHC---YSYADPNSEDFLSTEFILGAIPELLKAG---VRFVIFSGGEPLIR 82
Query: 99 VDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
D+ + A+ + G + TNG + +D I
Sbjct: 83 KDIFTIADAMRRAGIITYLSTNGLYVSEKNVDRI 116
>gi|167949588|ref|ZP_02536662.1| putative pyruvate radical-activating enzyme [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 215
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 24/121 (19%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+FC GC +C +C + + D I T
Sbjct: 39 AVIFC--QGCP-----------WRCHYCHNPDL-----LPRQGEQQIPWDQILAFLQTRR 80
Query: 83 KEGRYCVLTGGEPLLQVDVP-LIQALNKRGFEIAVETNGTI-----EPPQGIDWICVSPK 136
V +GGEP LQ +P I + GF++ + + G E +DWI + K
Sbjct: 81 GLLDAVVFSGGEPTLQRGLPDAIGQVKAMGFKVGLHSAGPYPERLRELLPLLDWIGLDIK 140
Query: 137 A 137
+
Sbjct: 141 S 141
>gi|75760690|ref|ZP_00740715.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|218898695|ref|YP_002447106.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus G9842]
gi|74491808|gb|EAO54999.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|218540897|gb|ACK93291.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus G9842]
gi|326941319|gb|AEA17215.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 150
Score = 38.7 bits (89), Expect = 0.54, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|228959785|ref|ZP_04121460.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229111025|ref|ZP_04240584.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock1-15]
gi|229128873|ref|ZP_04257849.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-Cer4]
gi|228654578|gb|EEL10440.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-Cer4]
gi|228672388|gb|EEL27673.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock1-15]
gi|228799915|gb|EEM46857.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar pakistani str.
T13001]
Length = 147
Score = 38.7 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|149190381|ref|ZP_01868653.1| molybdenum cofactor biosynthesis protein A [Vibrio shilonii AK1]
gi|148835760|gb|EDL52725.1| molybdenum cofactor biosynthesis protein A [Vibrio shilonii AK1]
Length = 329
Score = 38.7 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 21/180 (11%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
D + +C +C D G + R L ++ + +TGGEP L+
Sbjct: 22 DVCNFKCTYCLPD----GYKPPGHKRPAFLTLPEIKRVVTAFADCGTSKVRITGGEPSLR 77
Query: 99 VDVPLIQALNKR--GF-EIAVETNGTIEPPQGIDW-------ICVSPKA-GCDLKIKGGQ 147
D P I G ++A TNG Q W I VS + + +
Sbjct: 78 KDFPQIIETVANTPGITKVATTTNGYRMAKQVDTWRQAGLTNINVSVDSLDPRMFHQITG 137
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRLS--VQT 204
E K + +G++ + ++ M + +++ P + R +QT
Sbjct: 138 ENKFTEVMSGIDRAFEVGYEQVKVNVVLMKD-LNAKELPAFLNWIKDRPIQLRFIELMQT 196
>gi|15900180|ref|NP_344784.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae TIGR4]
gi|15902270|ref|NP_357820.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae R6]
gi|116517186|ref|YP_815747.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae D39]
gi|149006000|ref|ZP_01829729.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP18-BS74]
gi|168493942|ref|ZP_02718085.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC3059-06]
gi|182683226|ref|YP_001834973.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae CGSP14]
gi|225853847|ref|YP_002735359.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae JJA]
gi|298230506|ref|ZP_06964187.1| pyruvate formate-lyase activating enzyme [Streptococcus pneumoniae
str. Canada MDR_19F]
gi|303255059|ref|ZP_07341135.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS455]
gi|303259298|ref|ZP_07345276.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae SP-BS293]
gi|303261053|ref|ZP_07347002.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae SP14-BS292]
gi|303263381|ref|ZP_07349304.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS397]
gi|303265546|ref|ZP_07351446.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS457]
gi|303267896|ref|ZP_07353698.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS458]
gi|14971714|gb|AAK74424.1| putative pyruvate formate-lyase-activating enzyme [Streptococcus
pneumoniae TIGR4]
gi|15457772|gb|AAK99030.1| Pyruvate formate-lyase 3 [Streptococcus pneumoniae R6]
gi|116077762|gb|ABJ55482.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae D39]
gi|147762356|gb|EDK69317.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pneumoniae SP18-BS74]
gi|182628560|gb|ACB89508.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae CGSP14]
gi|183576177|gb|EDT96705.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae CDC3059-06]
gi|225723938|gb|ACO19791.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae JJA]
gi|301801188|emb|CBW33862.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
pneumoniae INV200]
gi|302597889|gb|EFL64959.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS455]
gi|302637890|gb|EFL68376.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae SP14-BS292]
gi|302639716|gb|EFL70173.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae SP-BS293]
gi|302642592|gb|EFL72937.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS458]
gi|302644986|gb|EFL75233.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS457]
gi|302647154|gb|EFL77378.1| pyruvate formate-lyase-activating enzyme, putative [Streptococcus
pneumoniae BS397]
gi|332076694|gb|EGI87156.1| glycyl-radical enzyme activating family protein [Streptococcus
pneumoniae GA17545]
Length = 258
Score = 38.7 bits (89), Expect = 0.55, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRMKPEKMKDAQREKFTL 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q + ++++ + A+ET
Sbjct: 62 VGEEKTVEEIITEVLKDKEFYEESGGGLTLSGGEIFAQFEFAKAILKSAKEHHIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
++ + ID I DLK + K V N I + F +
Sbjct: 122 TAFVDHEKFIDLIQYVDFIYTDLKHYNSIKHKKVTGVFNQMIIKNIHYAFSQ 173
>gi|317052492|ref|YP_004113608.1| Radical SAM domain-containing protein [Desulfurispirillum indicum
S5]
gi|316947576|gb|ADU67052.1| Radical SAM domain protein [Desulfurispirillum indicum S5]
Length = 352
Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 25/127 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C + + +L++ E VL+
Sbjct: 16 CNLSCIHC------RCS-------SDMEKDLFHLDTARALELVDRI---AEFCTPVFVLS 59
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL++ D+ + + + +GF + + TNG I + +S
Sbjct: 60 GGEPLMRDDLFEIARHADSKGFRVCIATNGGLLTDAICEQMKATNIRMVSLSLDGSSAEV 119
Query: 143 IKGGQEL 149
+++
Sbjct: 120 HDNFRQV 126
>gi|126465145|ref|YP_001040254.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
gi|126013968|gb|ABN69346.1| Radical SAM domain protein [Staphylothermus marinus F1]
Length = 259
Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C+FC + KG Q+ + + + +Y L
Sbjct: 48 GCNL-----------RCKFCWSWRYSFYTNKGFFQTPQQVYEKLTRIAEKRKY--KYIRL 94
Query: 91 TGGEPL--LQVDVPLIQALNKRGFEIAVETNG 120
+GGEP ++ + L++ L++ F +ETNG
Sbjct: 95 SGGEPTITMKHVIQLLELLDQTKFVFILETNG 126
>gi|296131877|ref|YP_003639124.1| Radical SAM domain protein [Thermincola sp. JR]
gi|296030455|gb|ADG81223.1| Radical SAM domain protein [Thermincola potens JR]
Length = 331
Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 18/120 (15%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD-LIEEQWITGEKEGRYCV 89
GCNL G Q+ A G V+ + L+E
Sbjct: 81 GCNLRCGFCQNWTIAH---------------GDPETVEVSPELLVEAAAREKTNGNIGIA 125
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL+ + + + +G + + TNG I P D + D+K +
Sbjct: 126 YTYSEPLMWYEFVRDAARLAHAKGLKNVLVTNGFINPEPMEDLLPYIDAMNIDVKAFRDE 185
>gi|225868817|ref|YP_002744765.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
gi|225702093|emb|CAW99732.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
Length = 343
Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 11/144 (7%)
Query: 33 NLWSGREQDR-LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
L+ G + + +CR C Y +D + + + +T
Sbjct: 2 PLYIGFKITENCNQRCRHC-----WASKNVMAHYTLDDIKA---ALGKIKQLNPYHVTIT 53
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEPL+ + ++Q + + TNG + I + D L+
Sbjct: 54 GGEPLVHDNWFEILQFAKDNFPVVELFTNGVLLNENNIRQLS-ELMEELDYIQISLDGLR 112
Query: 151 LVFPQVNVSPENYIGFDFERFSLQ 174
+ + S + ++ +Q
Sbjct: 113 ESYNRQRGSDDFSTVIKNIKYIVQ 136
>gi|24378975|ref|NP_720930.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
mutans UA159]
gi|24376865|gb|AAN58236.1|AE014895_1 putative pyruvate formate-lyase activating enzyme [Streptococcus
mutans UA159]
Length = 258
Score = 38.7 bits (89), Expect = 0.56, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 51/172 (29%), Gaps = 31/172 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQKYKPEQMLDAETKLPMI 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+ + +++ E+ G L+GGE Q + +++ + G A+ET
Sbjct: 62 IGEEKTVEDIISEVKKDIDFYEESGGGLTLSGGEIFAQFEFAKAILKCAKEEGLHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
E + D I DLK + V N I + F
Sbjct: 122 TAFAEHEKFTDLIQYVDFIYTDLKHYNTIRHRKVTGVNNNFIIQNIHYAFTH 173
>gi|223038453|ref|ZP_03608747.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter rectus RM3267]
gi|222880310|gb|EEF15397.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter rectus RM3267]
Length = 228
Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 43/167 (25%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F+GCN+ +C +C + T G+ + + +++ + +
Sbjct: 29 FAGCNM-----------RCAYC---YNVPIVTGAGQISCAEFIKFLDK----RKGKLSGV 70
Query: 89 VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
V +GGE L +PL + RGF + V+TNG+ G
Sbjct: 71 VFSGGECTLSPAFLPLASEVKSRGFLLKVDTNGSNLTIIGQAI--------------SLN 116
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ + + E ++ + G L +N + + Q
Sbjct: 117 LIDYIALDFKATKEKFLK----------VSGSNLYKNFLQTLEFLLQ 153
>gi|218233236|ref|YP_002368414.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus B4264]
gi|218161193|gb|ACK61185.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus B4264]
Length = 150
Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|283784587|ref|YP_003364452.1| putative pyruvate formate-lyase 3-activating enzyme [Citrobacter
rodentium ICC168]
gi|282948041|emb|CBG87605.1| putative pyruvate formate-lyase 3-activating enzyme [Citrobacter
rodentium ICC168]
Length = 299
Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
G NVD++ + ++ G L+GGEP +Q ++ L +A ++ G AVET
Sbjct: 101 GEVRNVDEIMSTVLRDKPFYDRSGGGITLSGGEPFMQPELAAALFKASHEAGIHTAVETC 160
Query: 120 GTIEP 124
+
Sbjct: 161 LHVPW 165
>gi|198242737|ref|YP_002218440.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|207859690|ref|YP_002246341.1| hypothetical protein SEN4326 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|197937253|gb|ACH74586.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|206711493|emb|CAR35878.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 287
Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|153854548|ref|ZP_01995818.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
gi|149752857|gb|EDM62788.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
Length = 309
Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 70/239 (29%), Gaps = 59/239 (24%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-------- 50
++ G+G VF F GC L + + + C C
Sbjct: 17 YSIHDGDGIRT---TVF--FKGCPLKCVWCHNPETQRFEQEIQYDREKCTGCGACAQVCP 71
Query: 51 -------------DTDFVGIQGT------------KGGRYNVDQLADLIEEQWITGEKEG 85
D + G G +Y V L + + + E+ G
Sbjct: 72 NHAITMEEGRPKLDKKLCTLCGKCENFCTQGIREIVGQKYPVKALVKELMKDLMFYEQSG 131
Query: 86 RYCVLTGGEPL---LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
L+GGE + + + +AL K + ++T G + + + D+K
Sbjct: 132 GGVTLSGGEVMAMSTDYILEIAKALKKEEVSLTIDTCGYVPYEKFEAILPYVNTFLYDVK 191
Query: 143 IKGGQELKLVFPQVNVSPENYI----GFDFERFSLQP--MDGPFLEENTNLAISYCFQN 195
+ + K N + + + P + EEN N I + ++
Sbjct: 192 VMDPELHKQYIGVDNKLILDNLVKLSDAGARIYIRIPTVKEVNGNEENMNETIRFLKEH 250
>gi|119871742|ref|YP_929749.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Pyrobaculum islandicum DSM 4184]
gi|119673150|gb|ABL87406.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Pyrobaculum islandicum DSM 4184]
Length = 239
Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL +C FC + + G +V++L + +
Sbjct: 24 LCGCNL-----------RCPFCHNWRIA-ERQNCGELDVERLLGELARAKPYIDY----L 67
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
+TGGEPLLQ L + + G ++ TN
Sbjct: 68 HVTGGEPLLQAEELRHLFKRAREAGVARSLNTN 100
>gi|56416339|ref|YP_153414.1| hypothetical protein SPA4379 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62182983|ref|YP_219400.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|194442357|ref|YP_002043806.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|197365261|ref|YP_002144898.1| hypothetical protein SSPA4064 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56130596|gb|AAV80102.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62130616|gb|AAX68319.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|194401020|gb|ACF61242.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|197096738|emb|CAR62361.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|322717490|gb|EFZ09061.1| Uncharacterized protein yjjW [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 287
Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|330990520|ref|ZP_08314478.1| Molybdenum cofactor biosynthesis protein A [Gluconacetobacter sp.
SXCC-1]
gi|329762423|gb|EGG78909.1| Molybdenum cofactor biosynthesis protein A [Gluconacetobacter sp.
SXCC-1]
Length = 358
Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
DR + +C +C +G R + D++ + + E LTGGEPL
Sbjct: 32 DRCNFRCPYCMPKATYHEGFRFLGPKERLDFDEIERV---ARMAAELGVTKIRLTGGEPL 88
Query: 97 LQVDVP--LIQALNKRGFE-IAVETNG 120
L+ +P + + G E +A+ TNG
Sbjct: 89 LRPGLPDLVRRLGALPGIEDVALTTNG 115
>gi|205355284|ref|YP_002229085.1| hypothetical protein SG4391 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205275065|emb|CAR40153.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326630450|gb|EGE36793.1| putative pyruvate formate-lyase activating enzyme with radical SAM
domain, YjjW type [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 287
Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGKCVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|126178953|ref|YP_001046918.1| radical SAM domain-containing protein [Methanoculleus marisnigri
JR1]
gi|125861747|gb|ABN56936.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
Length = 489
Score = 38.7 bits (89), Expect = 0.58, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 30 SGCNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEEQ 77
+GC G ++ L+ +C CD F + DQ+ ++
Sbjct: 74 AGCPNDCGACENHRSTTLLANIDLTNRCNLNCDFCFANARACGYVYEPTFDQIVGMLRML 133
Query: 78 WITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
+GGEP ++ D+P +I+ + G ++ V TNG
Sbjct: 134 REEKPVPAPAVQFSGGEPTMRDDLPEIIRKAKELGMSQVQVATNG 178
>gi|307720758|ref|YP_003891898.1| Radical SAM domain-containing protein [Sulfurimonas autotrophica
DSM 16294]
gi|306978851|gb|ADN08886.1| Radical SAM domain protein [Sulfurimonas autotrophica DSM 16294]
Length = 373
Score = 38.3 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 18/102 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + + +Q+ I E + ++ + +
Sbjct: 33 CNLSCLHCYSKSTL--------------DEVDTLTTEQIKKTILEM---KDNGVKFIIFS 75
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
GGEPL + D+ + + G + +NG I I
Sbjct: 76 GGEPLTRKDLFEIADFCKENGIITYLSSNGLYFTKGNIKKIT 117
>gi|260459420|ref|ZP_05807675.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium
opportunistum WSM2075]
gi|259034974|gb|EEW36230.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium
opportunistum WSM2075]
Length = 331
Score = 38.3 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 20/164 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR +C +C + + ++ L +L + EK R LTGGEPL++ +
Sbjct: 20 DRCDFRCTYC----MAEDMAFLPKKDLLSLEELDRLCTVFVEKGVRRLRLTGGEPLVRKN 75
Query: 101 VPLIQALNKRGF------EIAVETNGTI-------EPPQGIDWICVS---PKAGCDLKIK 144
+ + R E+ + TNG+ G+ + VS A KI
Sbjct: 76 IMHLVRQLSRHLESGALEELTLTTNGSQLARFATELADCGVKRVNVSLDTLDADKFHKIT 135
Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
L V ++ + + +L+ + L E A
Sbjct: 136 RWGHLDKVMAGIDAAQAAGLKVKLNAVALKDFNDAELPEMMRWA 179
>gi|296136124|ref|YP_003643366.1| molybdenum cofactor biosynthesis protein A [Thiomonas intermedia
K12]
gi|295796246|gb|ADG31036.1| molybdenum cofactor biosynthesis protein A [Thiomonas intermedia
K12]
Length = 378
Score = 38.3 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + + + + ++ ++ + R LTGGEPLL+
Sbjct: 48 DRCNFRCTYCMPKEIFDKHYEFLSHADLLSFEEITRAAQVFMALGVRKIRLTGGEPLLRK 107
Query: 100 DVP-----LIQALNKRGF--EIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKG 145
++ L G E+ + TNG+I G+D + VS A D +
Sbjct: 108 NLERLVEMLHSLRTPEGLAPELTLTTNGSILARKATLLKEAGLDRVTVSLDALDDAAFRQ 167
Query: 146 GQELKLVFPQV 156
++ +V
Sbjct: 168 MNDVDFPVAEV 178
>gi|238910724|ref|ZP_04654561.1| hypothetical protein SentesTe_06238 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 287
Score = 38.3 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|228922308|ref|ZP_04085615.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228837363|gb|EEM82697.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 147
Score = 38.3 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 23/101 (22%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE 113
I +GG+P Q A + F+
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQAAEVKKVAKIVKDFK 86
>gi|254460688|ref|ZP_05074104.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2083]
gi|206677277|gb|EDZ41764.1| radical SAM domain protein [Rhodobacteraceae bacterium HTCC2083]
Length = 317
Score = 38.3 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
LW + +C+ C ++ D++ D +++ I R T
Sbjct: 37 LWFNTG-TLCNIECKNC---YILSSPKNDALVYITADEVRDYLDQLEI-RNWGVREIAFT 91
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP 125
GGEP + + + +A +RG+++ + TN
Sbjct: 92 GGEPFMNPEIIEITRASLERGYDVLILTNAMRPMM 126
>gi|332044074|gb|EGI80269.1| Radical SAM domain protein [Lacinutrix algicola 5H-3-7-4]
Length = 471
Score = 38.3 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 24/118 (20%)
Query: 33 NLWSGREQDRLSAQCRFC-----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
+LW + + +C+FC D + G + ++E+
Sbjct: 187 HLW-----EPCNMRCKFCFATFQDVKQTIL---PKGHLPESEALKVVEQI---ANAGFEK 235
Query: 88 CVLTGGEPLL-QVDVPLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
GGEPLL + LI+ + G + TNG+ E +DWI VS +
Sbjct: 236 ITFAGGEPLLCKWLPNLIKRAKQLGMTTMIVTNGSKLTDAFLKENTAYLDWIAVSIDS 293
>gi|221133421|ref|ZP_03559726.1| pyrroloquinoline quinone biosynthesis protein PqqE [Glaciecola sp.
HTCC2999]
Length = 377
Score = 38.3 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E C +C + + + + ++ E E +
Sbjct: 14 PLWLLAELTYDCPLHCPYCSNPVQMTE--RKDECDTETWKKVLSE---AREMGAVQLGFS 68
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEPLL+ D+ ++ A ++ GF + T+G I ++ K LK G ++
Sbjct: 69 GGEPLLRKDLEVLVAHASELGFYTNLITSG----------IGLTEKRIKGLKEAGLDHIQ 118
Query: 151 LVFPQVNVSPENYIGFDFERF 171
L F N + IG F
Sbjct: 119 LSFQAANADENDLIGNKRHSF 139
>gi|323440201|gb|EGA97915.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
O11]
gi|323443370|gb|EGB00986.1| formate acetyltransferase activating enzyme [Staphylococcus aureus
O46]
Length = 218
Score = 38.3 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQA 106
+C VD++ + I + G ++GGEPLLQ+ L
Sbjct: 2 YCHNPDTWKISEPSREVTVDEMVNEILPYKPYFDASGGGVTVSGGEPLLQMPFLEKLFAE 61
Query: 107 LNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
L + G ++T+ G + + + K + L ++ +
Sbjct: 62 LKENGVHTCLDTS------AGCANDTKAFQRHFEELQKHTDLILLDIKHIDNDKHIRLTG 115
Query: 167 DFERFSL----------QPMD 177
L QP+
Sbjct: 116 KPNTHILNFARKLSDMKQPVW 136
>gi|229047284|ref|ZP_04192883.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH676]
gi|228724026|gb|EEL75372.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH676]
Length = 147
Score = 38.3 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|229146168|ref|ZP_04274543.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-ST24]
gi|229151796|ref|ZP_04279995.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus m1550]
gi|228631609|gb|EEK88239.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus m1550]
gi|228637227|gb|EEK93682.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-ST24]
Length = 147
Score = 38.3 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|225860284|ref|YP_002741793.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae Taiwan19F-14]
gi|225727510|gb|ACO23361.1| pyruvate formate-lyase 3 [Streptococcus pneumoniae Taiwan19F-14]
Length = 258
Score = 38.3 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQRMKPEKMKDAQREKFTL 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+++ + + E+ G L+GGE Q + ++++ + A+ET
Sbjct: 62 VGEEKTVEEIITEVLKDKEFYEESGGGLTLSGGEIFAQFEFAKAILKSAKEHHIHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
++ + ID I DLK + K V N I + F +
Sbjct: 122 TAFVDHEKFIDLIQYVDFIYTDLKHYNSIKHKKVTGVFNQMIIKNIHYAFSQ 173
>gi|319783607|ref|YP_004143083.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169495|gb|ADV13033.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 331
Score = 38.3 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 20/164 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR +C +C + + ++ L +L + EK R LTGGEPL++ +
Sbjct: 20 DRCDFRCTYC----MAEDMAFLPKKDLLSLEELDRLCTVFIEKGVRRLRLTGGEPLVRKN 75
Query: 101 VPLIQALNKRGF------EIAVETNGTIEP-------PQGIDWICVS---PKAGCDLKIK 144
+ + R E+ + TNG+ G+ I VS A KI
Sbjct: 76 IMHLVRQLSRHLESGALEELTLTTNGSQLSRFAAELADCGVRRINVSLDTLDADKFHKIT 135
Query: 145 GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
L V ++ + + +L+ + L E A
Sbjct: 136 RWGHLDKVMQGIDAAQAAGLKVKLNAVALKDFNDAELPEMMRWA 179
>gi|293369361|ref|ZP_06615946.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
gi|292635528|gb|EFF54035.1| radical SAM domain protein [Bacteroides ovatus SD CMC 3f]
Length = 394
Score = 38.3 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
+ +C +C + GT + VD+ I + R L GGEPLL+ +
Sbjct: 55 DCNFRCPYCFEKDIQKDGTAFTKEMVDKAYQAILQIAPDERLRSRSITLYGGEPLLKRNK 114
Query: 102 P----LIQALNKRGFEIAVETNGT 121
+I+ + GF+ + +NG
Sbjct: 115 NIISYIIEQGKELGFKFSAISNGY 138
>gi|323939804|gb|EGB36006.1| radical SAM superfamily protein [Escherichia coli E482]
Length = 287
Score = 38.3 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEMLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|296504107|ref|YP_003665807.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis BMB171]
gi|296325159|gb|ADH08087.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis BMB171]
Length = 150
Score = 38.3 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|168822108|ref|ZP_02834108.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205341387|gb|EDZ28151.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|320088997|emb|CBY98753.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 287
Score = 38.3 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDICEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|16767806|ref|NP_463421.1| pyruvate formate lyase-activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167989806|ref|ZP_02570906.1| pyruvate formate lyase-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|197263762|ref|ZP_03163836.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|200389241|ref|ZP_03215853.1| pyruvate formate lyase-activating enzyme [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|16423130|gb|AAL23380.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|197242017|gb|EDY24637.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|199606339|gb|EDZ04884.1| pyruvate formate lyase-activating enzyme [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205331531|gb|EDZ18295.1| pyruvate formate lyase-activating enzyme [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261249645|emb|CBG27516.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996927|gb|ACY91812.1| pyruvate formate lyase-activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301161044|emb|CBW20581.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915659|dbj|BAJ39633.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|323132905|gb|ADX20335.1| pyruvate formate lyase-activating enzyme [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
Length = 287
Score = 38.3 bits (88), Expect = 0.60, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSIDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|228966496|ref|ZP_04127549.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228793218|gb|EEM40768.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 147
Score = 38.3 bits (88), Expect = 0.61, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|254173013|ref|ZP_04879687.1| radical SAM domain protein [Thermococcus sp. AM4]
gi|214033169|gb|EEB73997.1| radical SAM domain protein [Thermococcus sp. AM4]
Length = 590
Score = 38.3 bits (88), Expect = 0.61, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C L G +R + C +C F +G ++Q+ ++
Sbjct: 124 CPLDCGLCPRHRSHTSLLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNA 181
Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
TGGEP L+ D+ +I+ + G+ I + T+G
Sbjct: 182 KKEYPIGANAVQFTGGEPTLRDDLIEIIKIAKEEGYDHIQLNTDG 226
>gi|39998543|ref|NP_954494.1| radical SAM domain-containing protein [Geobacter sulfurreducens
PCA]
gi|39985490|gb|AAR36844.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
gi|298507486|gb|ADI86209.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
[Geobacter sulfurreducens KN400]
Length = 356
Score = 38.3 bits (88), Expect = 0.61, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 25/144 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
CNL CR C +D +G + ++ L++E +
Sbjct: 15 TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTEEGKKLLKEI---ADFSKPVI 58
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGC 139
VL+GGEPL++ D+ L + G + + TNG I + +S
Sbjct: 59 VLSGGEPLMRQDIFELAEYGTSLGLRMCMATNGALVTDEICAKMRKADIKMVSLSLDGSS 118
Query: 140 DLKIKGGQELKLVFPQVNVSPENY 163
++ F V + E +
Sbjct: 119 AEVHDDFRQCPGAFEGVVRAAEIF 142
>gi|308182926|ref|YP_003927053.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
PeCan4]
gi|308065111|gb|ADO07003.1| molybdenum cofactor biosynthesis protein A [Helicobacter pylori
PeCan4]
Length = 321
Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 24/169 (14%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ + +C++C T +D + + ++ G K+ R +TGGEPLL+
Sbjct: 20 QCNFRCQYCMPTTPLNFFDDE--ELLPLDNVLEFLKIAIDEGVKKIR---ITGGEPLLRK 74
Query: 100 -DVPLIQALNKRGFEIAVE--TNGT-------IEPPQGIDWICV---SPKAGCDLKIKGG 146
I L+ E+A+ TNG G+ + V S K+ LKI
Sbjct: 75 GLDEFIAKLHAYNKEVALVLSTNGFLLKKMAKDLKNDGLSRVNVSLDSLKSDRVLKISQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
LK + S + + + +E L + Y
Sbjct: 135 DALKNTLEGIEESLKVGLKLKLNMVV---IKSVNDDEILEL-LEYAKNR 179
>gi|241764970|ref|ZP_04762968.1| molybdenum cofactor biosynthesis protein A [Acidovorax delafieldii
2AN]
gi|241365443|gb|EER60224.1| molybdenum cofactor biosynthesis protein A [Acidovorax delafieldii
2AN]
Length = 378
Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + +N + I + R LTGGEPLL+
Sbjct: 48 DRCNFRCNYCMPKEVFDKDYAYLPHNALLSFEEITRLARLFMAHGVRKIRLTGGEPLLRK 107
Query: 100 DVPLIQALNKRGFEI-------AVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
+V + A + I + TNG+ G+ + VS D +
Sbjct: 108 NVEELVAQLAQLRTIDGTPPDLTLTTNGSLLARKARALREAGLSRVTVSLDGLDDAVFRR 167
Query: 146 GQELKLVFPQV 156
++ V
Sbjct: 168 MNDVDFPVEDV 178
>gi|238059634|ref|ZP_04604343.1| radical activating enzyme [Micromonospora sp. ATCC 39149]
gi|237881445|gb|EEP70273.1| radical activating enzyme [Micromonospora sp. ATCC 39149]
Length = 214
Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 43/189 (22%), Gaps = 28/189 (14%)
Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
G G G GC + C C V + ++ D++
Sbjct: 16 GPGRRVG-----VWLQGC-----------AIGCPGC----VSQDTWFAEPRHDTEVDDVL 55
Query: 75 EEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
+ +TGGEP Q + G G + +
Sbjct: 56 DRVAGLDPAGITGVTVTGGEPSEQPEALAALVTGLAGLG-----AGHDWDVLCYTGVELD 110
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
G + + P P + + L P +
Sbjct: 111 EFRGRCPGAYPSIDALITGPYRAGEPTDLVWRGSANQRLVPCSPLGRHRYAP-WVDARRD 169
Query: 195 NPKWRLSVQ 203
P+ L +Q
Sbjct: 170 RPE--LQLQ 176
>gi|168262382|ref|ZP_02684355.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|205348811|gb|EDZ35442.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
Length = 287
Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITISGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F +
Sbjct: 188 GRDNTHIKHSIRFLAAQ 204
>gi|157377180|ref|YP_001475780.1| radical SAM family Fe-S protein [Shewanella sediminis HAW-EB3]
gi|157319554|gb|ABV38652.1| Fe-S protein, radical SAM family [Shewanella sediminis HAW-EB3]
Length = 486
Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 14/142 (9%)
Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G D C C T + + + + + + +
Sbjct: 83 GCPYDCGICPDHEQHGCTVLVEVTDHCNLRCPTCYANS-SPERQTHRGMEQVKAMLDLAV 141
Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKA 137
E E ++GGEP L D ++ +R + V TNG ++ A
Sbjct: 142 KNEGEPNIVQISGGEPTLHPDFFTILDEAKERPIKHLLVNTNGLKLAQSEAFVKRLASYA 201
Query: 138 GCDLKIKGGQELKLVFPQVNVS 159
L+ ++ +
Sbjct: 202 PGIEVYLQFDSLENDALEIMRA 223
>gi|254252868|ref|ZP_04946186.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia dolosa
AUO158]
gi|124895477|gb|EAY69357.1| Molybdenum cofactor biosynthesis enzyme [Burkholderia dolosa
AUO158]
Length = 369
Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPREVFDKDYPFLPHSALLAHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDALFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|71908225|ref|YP_285812.1| GTP cyclohydrolase subunit MoaA [Dechloromonas aromatica RCB]
gi|71847846|gb|AAZ47342.1| GTP cyclohydrolase subunit MoaA [Dechloromonas aromatica RCB]
Length = 327
Score = 38.3 bits (88), Expect = 0.62, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 21/168 (12%)
Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR +C +C +DF G + + + D++ L+ + R LTGGEPL++
Sbjct: 23 DRCDLRCAYCMPSDFSGYEEPEH-WLSFDEIERLV---GLFARFGLRRVRLTGGEPLMRK 78
Query: 100 -DVPLIQALNKRG--FEIAVETNGTIEPPQGI-------DWICVSPKAGCDLKI---KGG 146
L + + ++++ TNGT G D + VS +
Sbjct: 79 GLAGLARRIKAIPGVEDLSLSTNGTQLRKHGQALRDAGVDRLNVSLDTLQPARFAEITRR 138
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
L V ++ IGF + ++ + G +E + +C Q
Sbjct: 139 DALADVL--AGLATAREIGFAPIKINMVWLAGVNDDE-LEAMVDFCRQ 183
>gi|302339424|ref|YP_003804630.1| radical SAM protein [Spirochaeta smaragdinae DSM 11293]
gi|301636609|gb|ADK82036.1| Radical SAM domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 540
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 11/105 (10%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG-TKGGRYNVDQLADLIEEQWIT 80
A F +C +C + + + + LA ++++
Sbjct: 256 VPA-FIYVQ--------IHSACPQRCSWCPYPKAPSKAIDRSESMSPEALASILDQVLEL 306
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNGTIEP 124
E+ L G L ++ + R G +ET+G
Sbjct: 307 SEEAVIGLSLWGEPALHPDIQAMVGEVISRPGLSAMIETSGIGWN 351
>gi|257051257|ref|YP_003129090.1| molybdenum cofactor biosynthesis protein A [Halorhabdus utahensis
DSM 12940]
gi|256690020|gb|ACV10357.1| molybdenum cofactor biosynthesis protein A [Halorhabdus utahensis
DSM 12940]
Length = 375
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
DR + C +C DT G + D++ +IE + + TGGE
Sbjct: 19 DRCNFDCVYCHNEGLGDTR--GPMAPSEEELSTDEVVRVIE---VAADHGVEAVKFTGGE 73
Query: 95 PLLQVDVPLIQALNKRGFEIAVETNGTI 122
P+L+ D+ I G E ++ TNGT
Sbjct: 74 PMLRTDLGEIVRRTPAGVETSMTTNGTF 101
>gi|46578716|ref|YP_009524.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603719|ref|YP_968119.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio vulgaris DP4]
gi|46448128|gb|AAS94783.1| radical SAM domain protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563948|gb|ABM29692.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio vulgaris DP4]
gi|311232589|gb|ADP85443.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio vulgaris RCH1]
Length = 245
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GR + GCN +C C + + V IE
Sbjct: 21 GRSSCVIFLGGCN-----------MRCPTC---HNWQLAWEAEKLPVLA-RKDIEAYLNA 65
Query: 81 GEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
V+TGGE + L L G + +++NG
Sbjct: 66 RRTWLDGIVITGGEATRVSGLAALAADLKAYGLPLKIDSNGLCP 109
>gi|237813219|ref|YP_002897670.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei MSHR346]
gi|237506155|gb|ACQ98473.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei MSHR346]
Length = 377
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 52 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 111
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 112 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKR 171
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 172 MNDADFASADV 182
>gi|167903657|ref|ZP_02490862.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei NCTC 13177]
Length = 370
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 105 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|167720586|ref|ZP_02403822.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei DM98]
gi|167739576|ref|ZP_02412350.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 14]
gi|167816780|ref|ZP_02448460.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 91]
gi|167825186|ref|ZP_02456657.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 9]
gi|167846683|ref|ZP_02472191.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei B7210]
gi|167895272|ref|ZP_02482674.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 7894]
gi|167911906|ref|ZP_02498997.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 112]
gi|167919900|ref|ZP_02506991.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei BCC215]
gi|254191222|ref|ZP_04897726.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei Pasteur 52237]
gi|254195839|ref|ZP_04902265.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei S13]
gi|157938894|gb|EDO94564.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei Pasteur 52237]
gi|169652584|gb|EDS85277.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei S13]
Length = 370
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 105 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|126454258|ref|YP_001067111.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1106a]
gi|217420454|ref|ZP_03451959.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 576]
gi|226197916|ref|ZP_03793490.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei Pakistan 9]
gi|254259569|ref|ZP_04950623.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1710a]
gi|126227900|gb|ABN91440.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1106a]
gi|217395866|gb|EEC35883.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 576]
gi|225930104|gb|EEH26117.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei Pakistan 9]
gi|254218258|gb|EET07642.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1710a]
Length = 377
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 52 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 111
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 112 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKR 171
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 172 MNDADFASADV 182
>gi|126441374|ref|YP_001059824.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 668]
gi|126220867|gb|ABN84373.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 668]
Length = 377
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 52 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 111
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 112 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKR 171
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 172 MNDADFASADV 182
>gi|121598421|ref|YP_993796.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
SAVP1]
gi|124385812|ref|YP_001028740.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
NCTC 10229]
gi|126451180|ref|YP_001081354.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
NCTC 10247]
gi|242314341|ref|ZP_04813357.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1106b]
gi|251767263|ref|ZP_02266560.2| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
PRL-20]
gi|254178129|ref|ZP_04884784.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
ATCC 10399]
gi|254357683|ref|ZP_04973956.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
2002721280]
gi|121227231|gb|ABM49749.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
SAVP1]
gi|124293832|gb|ABN03101.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
NCTC 10229]
gi|126244050|gb|ABO07143.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
NCTC 10247]
gi|148026810|gb|EDK84831.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
2002721280]
gi|160699168|gb|EDP89138.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
ATCC 10399]
gi|242137580|gb|EES23982.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1106b]
gi|243063305|gb|EES45491.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
PRL-20]
Length = 363
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 38 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 97
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 98 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKR 157
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 158 MNDADFASADV 168
>gi|53720059|ref|YP_109045.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei K96243]
gi|53725728|ref|YP_102316.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
ATCC 23344]
gi|254199210|ref|ZP_04905576.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
FMH]
gi|254205515|ref|ZP_04911867.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
JHU]
gi|254296849|ref|ZP_04964302.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 406e]
gi|52210473|emb|CAH36456.1| putative molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei K96243]
gi|52429151|gb|AAU49744.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
ATCC 23344]
gi|147748806|gb|EDK55880.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
FMH]
gi|147752958|gb|EDK60023.1| molybdenum cofactor biosynthesis protein A [Burkholderia mallei
JHU]
gi|157807170|gb|EDO84340.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 406e]
Length = 360
Score = 38.3 bits (88), Expect = 0.63, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 35 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 94
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 95 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKR 154
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 155 MNDADFASADV 165
>gi|325662619|ref|ZP_08151219.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471116|gb|EGC74342.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 332
Score = 38.3 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +CR+C G K + I E WI E +TGGEPL++
Sbjct: 18 DRCNLRCRYC-----MPDGIKSIPMEQILTLEEIAEVCWIASELGITKFKVTGGEPLVRK 72
Query: 100 -DVPLIQALNKRGF--EIAVETNG 120
+ LI+ L + ++ + TNG
Sbjct: 73 GCMELIRMLKALPYTEQVTLTTNG 96
>gi|331661331|ref|ZP_08362255.1| putative activating enzyme [Escherichia coli TA143]
gi|331061246|gb|EGI33209.1| putative activating enzyme [Escherichia coli TA143]
Length = 287
Score = 38.3 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTVGRCNDCGECVPQCPHQALQIVNGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VEWNAVVCEQCDTCLKMCPQHATPMAQLMSVDEVLSHIHKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|188586745|ref|YP_001918290.1| Radical SAM domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351432|gb|ACB85702.1| Radical SAM domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 356
Score = 38.3 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 23/151 (15%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL + + D D V Y+ D+++ + +
Sbjct: 100 GCNLRCEYCHNW---RLSQGDIDIV-------KEYHYLSPVDVVKNAL---KNNIKILAF 146
Query: 91 TGGEP--LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ- 147
TG EP + + + + E+ + TNG I P + I DLK +
Sbjct: 147 TGNEPTVFYEYLYEISREAKSQNLEVLLNTNGFINPEPMKELITFLDGVNIDLKGFSNKF 206
Query: 148 -------ELKLVFPQVNVSPENYIGFDFERF 171
+L+ V + E +
Sbjct: 207 YRDVVKGQLEPVLDTAKIVREQGAWLELVNL 237
>gi|47681506|gb|AAT37518.1| unknown [Prochloron didemni]
Length = 340
Score = 38.3 bits (88), Expect = 0.64, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 30/144 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADL----IEEQWITGEKEGRY 87
CNL +CR C + G G ++ +++ + IE+ +
Sbjct: 2 CNL-----------RCRMC---YEW--GDNGSYFSKEKVVSIDYPVIEKVIKDLLPGKPF 45
Query: 88 CVLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGT---------IEPPQGIDWICVSPKA 137
L GGEPLL + +I+ + + G ++ + TNGT +E WI +
Sbjct: 46 FGLFGGEPLLYPHIGEVIRLIREGGCKVDIPTNGTLIEQKAEMLVETQPNRLWISLDGPP 105
Query: 138 GCDLKIKGGQELKLVFPQVNVSPE 161
+ +G + V +N E
Sbjct: 106 EINDSQRGKGVFERVIRGINRLHE 129
>gi|78221243|ref|YP_382990.1| radical SAM family protein [Geobacter metallireducens GS-15]
gi|78192498|gb|ABB30265.1| Radical SAM [Geobacter metallireducens GS-15]
Length = 356
Score = 38.3 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 25/144 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
CNL CR C +D +G + ++ L++E +
Sbjct: 15 TQKCNLKC--------VHCR-CSSDLTSSEGD----FTTEEGKKLLKEI---ADFSKPVI 58
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGC 139
VL+GGEPL++ D+ L + G + + TNG I + +S
Sbjct: 59 VLSGGEPLMRKDIFELAEYGTSLGLRMCMATNGALVTDEICQKMRKADIKMVSLSLDGST 118
Query: 140 DLKIKGGQELKLVFPQVNVSPENY 163
++ F V + E +
Sbjct: 119 AAVHDDFRQCPGAFEGVVRAAEIF 142
>gi|307136578|ref|ZP_07495934.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
H736]
gi|312966093|ref|ZP_07780319.1| radical SAM superfamily protein [Escherichia coli 2362-75]
gi|331640421|ref|ZP_08341569.1| putative activating enzyme [Escherichia coli H736]
gi|312289336|gb|EFR17230.1| radical SAM superfamily protein [Escherichia coli 2362-75]
gi|331040167|gb|EGI12374.1| putative activating enzyme [Escherichia coli H736]
Length = 287
Score = 38.3 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +V+++ + + + E ++GGE
Sbjct: 69 VLWNAVVCEQCDTCLKRCPQHATPMAQSMSVEEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|170287908|ref|YP_001738146.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
gi|170175411|gb|ACB08463.1| Radical SAM domain protein [Thermotoga sp. RQ2]
Length = 323
Score = 38.3 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D 100
R + +C+ C + + +++ +LI + G + GGEPLL
Sbjct: 15 RCNFRCKHC---YCEAGKPHPEELSFEEIKELILDMKELGTWA---LDIVGGEPLLHPQI 68
Query: 101 VPLIQALNKRGFEIAVETNG 120
+ ++ + G + + TNG
Sbjct: 69 LDILAFGKEVGQRLMINTNG 88
>gi|163786902|ref|ZP_02181350.1| Fe-S protein, radical SAM family [Flavobacteriales bacterium ALC-1]
gi|159878762|gb|EDP72818.1| Fe-S protein, radical SAM family [Flavobacteriales bacterium ALC-1]
Length = 464
Score = 38.3 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 25/197 (12%)
Query: 31 GCNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G D ++ +C C T + G T G ++++ +++ +
Sbjct: 80 GCPYDCGLCPDHEQHSCLTVLEVTDRCNLTCPTCYAGSSPTYGRHRTLEEVKTMLD-TIV 138
Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137
EKE ++GGEP + ++ + + TNG + A
Sbjct: 139 KNEKEPDVVQISGGEPTIHPQFWDIMDYAKSLPIRHLMLNTNGIKIAKDFEFAKRLKTYA 198
Query: 138 GCDLKIKGGQELKLVFPQ----------VNVSPENYIGFDFERFSLQPMDGPFLEENTNL 187
+ Q + EN + + + +
Sbjct: 199 PDFEIYLQFDSFENTVLQELRGADLNDIREQALENLNKLNLSTTLVVTLQKGLNDNEIGK 258
Query: 188 AISYCFQNPKWR-LSVQ 203
I Y + R +++Q
Sbjct: 259 IIDYALKQKCVRGVTLQ 275
>gi|254457435|ref|ZP_05070863.1| hypothetical protein CBGD1_1131 [Campylobacterales bacterium GD 1]
gi|207086227|gb|EDZ63511.1| hypothetical protein CBGD1_1131 [Campylobacterales bacterium GD 1]
Length = 373
Score = 38.3 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 18/101 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + + +Q+ I E E ++ + +
Sbjct: 33 CNLSC--------MHC------YSKSTLDEVDTLTTEQIKKTILEM---KENGVKFIIFS 75
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPL + D+ + G + +NG I I
Sbjct: 76 GGEPLTRKDLFEIADFCKDNGIITYLSSNGLYFTKGNIKRI 116
>gi|281357901|ref|ZP_06244386.1| glycyl-radical enzyme activating protein family [Victivallis
vadensis ATCC BAA-548]
gi|281315559|gb|EFA99587.1| glycyl-radical enzyme activating protein family [Victivallis
vadensis ATCC BAA-548]
Length = 305
Score = 38.3 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 50/173 (28%), Gaps = 16/173 (9%)
Query: 7 KEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDR----LSAQCRFC----DTDFVGIQ 58
EIF T G A F + C R +++ +C C G
Sbjct: 52 SEIFFT---PSRCVGCGACF---TVCPASCHRMENKMHLFDRKRCTQCGICAANCPAGAL 105
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAV 116
G + +++ + + + E G ++GGEPL D K V
Sbjct: 106 ELCGRHLSPEEVMAEVLKDRVFYETSGGGMTVSGGEPLAHFDYLFHLLSLARKEKIHTCV 165
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
ET+G I + D K +L + N D
Sbjct: 166 ETSGYASFEHIRALIPLVSLWLWDFKASEADHRRLTGVEAERIRGNLRKLDAC 218
>gi|46579965|ref|YP_010773.1| radical SAM domain-containing protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449381|gb|AAS96032.1| radical SAM domain protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234037|gb|ADP86891.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
Length = 543
Score = 38.3 bits (88), Expect = 0.66, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 23/111 (20%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL 70
GC G R + +CR+C D G + L
Sbjct: 81 GCPFDCGLCPQHNQHTCTAVFEVTTRCNLRCRYCFAAAQDDETQTLQPSAHVGDPPLHTL 140
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120
L+E L+GGEP L ++ + + + TNG
Sbjct: 141 VALLEAVRQKTGPCN--IQLSGGEPTLRHDLCDIVSHARRLFPFVQLNTNG 189
>gi|257458934|ref|ZP_05624054.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter gracilis RM3268]
gi|257443638|gb|EEV18761.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter gracilis RM3268]
Length = 240
Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 19/97 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GCN +C +C + G+ + ++ + +
Sbjct: 40 FCGCN-----------MRCNYCYNPQIVT---SRGKISNEEFL----RFLDARAGKLQGI 81
Query: 89 VLTGGE-PLLQVDVPLIQALNKRGFEIAVETNGTIEP 124
V +GGE +PL + +RGF + V+TNG+
Sbjct: 82 VFSGGECTCASDFIPLAHEVKQRGFLLKVDTNGSNPQ 118
>gi|1684728|emb|CAA98151.1| NirJ protein [Pseudomonas stutzeri]
Length = 393
Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 17/127 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + +I++ E R +L+
Sbjct: 40 CNLTCKHCYA-------------TSADSEFRDELDTAEALKVIDDL---HEAGVRVLILS 83
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEPLL+ L +GF +A+ TNGT+ I+ I + + I G + +
Sbjct: 84 GGEPLLRADIFQLADYARDKGFFVALSTNGTLIDESNIERIAAAQFDYVGISIDGLEAVH 143
Query: 151 LVFPQVN 157
+ Q+
Sbjct: 144 DEWRQLK 150
>gi|121603640|ref|YP_980969.1| pyrroloquinoline quinone biosynthesis protein PqqE [Polaromonas
naphthalenivorans CJ2]
gi|120592609|gb|ABM36048.1| coenzyme PQQ biosynthesis protein E [Polaromonas naphthalenivorans
CJ2]
Length = 380
Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 34 LWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
LW E R C FC T + +Q + Q D++ + G +
Sbjct: 19 LWLLAELTYRCPLHCVFCYNPTQYARLQ----EEMSTAQWVDVMRQARALGAAQ---LGF 71
Query: 91 TGGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
+GGEP+L+ D L+Q GF + T+G
Sbjct: 72 SGGEPMLRDDLEELVQEARHLGFYTNLITSG 102
>gi|325298763|ref|YP_004258680.1| Radical SAM domain-containing protein [Bacteroides salanitronis DSM
18170]
gi|324318316|gb|ADY36207.1| Radical SAM domain protein [Bacteroides salanitronis DSM 18170]
Length = 359
Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 29/182 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + D + +++ + + +LT
Sbjct: 40 CNLHCRHCGSDCKKIAGYRD-------------MPKEDFLRVLDNVASHTDPHKVFIILT 86
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVS---PKAGC 139
GGEPL++ D+ +A+ ++GF + TNG P+ G+ VS K
Sbjct: 87 GGEPLVREDLEACGRAIYEKGFPWGMVTNGLFLTPERLEGLIQAGMHTATVSLDGFKEEH 146
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERF-SLQPMDGPFLEENTNLAISYCFQNPKW 198
+ + + + GF F+ + + P+LEE I + W
Sbjct: 147 NWMRGHPESFDRAIKAIRMLAA-LPGFVFDVVTCVNKHNYPYLEELKQYLIGIGLKR--W 203
Query: 199 RL 200
RL
Sbjct: 204 RL 205
>gi|266835|sp|Q01060|PQQE_ESCVU RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|148416|gb|AAA24822.1| gluconic acid [Pantoea agglomerans]
Length = 377
Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW E R QC +C + +Q ++ + G + +
Sbjct: 11 PLWLLAELTYRCPLQCPYCSNPLDFAAQE--KELSTEQWIEVFRQARAMGSVQ---LGFS 65
Query: 92 GGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
GEPL++ D+P I A GF + T+G
Sbjct: 66 AGEPLVRKDLPELIAAARDLGFYTNLITSG 95
>gi|117924371|ref|YP_864988.1| radical SAM protein [Magnetococcus sp. MC-1]
gi|117608127|gb|ABK43582.1| Radical SAM domain protein [Magnetococcus sp. MC-1]
Length = 365
Score = 38.3 bits (88), Expect = 0.67, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
+ +C FC D++G + + D + + + G K Y GEPLL
Sbjct: 48 CNHRCTFCAVDYIGYNSAN--KLDADMMKARLPQMGALGIKSIMYA--GEGEPLLHKRIS 103
Query: 102 PLIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKGGQELK 150
++ G + A+ TN T + + WI S AG + K
Sbjct: 104 EILLDTKAAGIDTALTTNATVLPMDFLDKALPTLSWIKASINAGSAENYAQIHQTK 159
>gi|16763360|ref|NP_458977.1| hypothetical protein STY4916 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144838|ref|NP_808180.1| hypothetical protein t4608 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213427569|ref|ZP_03360319.1| hypothetical protein SentesTyphi_19441 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213613227|ref|ZP_03371053.1| hypothetical protein SentesTyp_12389 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647464|ref|ZP_03377517.1| hypothetical protein SentesTy_09332 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289828930|ref|ZP_06546648.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25285904|pir||AI1072 conserved hypothetical protein STY4916 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505669|emb|CAD03400.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140477|gb|AAO72040.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 287
Score = 38.3 bits (88), Expect = 0.68, Method: Composition-based stats.
Identities = 34/197 (17%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSIDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSIDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L AL + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTALKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|312622876|ref|YP_004024489.1| molybdenum cofactor biosynthesis protein a [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203343|gb|ADQ46670.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
kronotskyensis 2002]
Length = 314
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + C +C T + + + + + +++ +I G ++ R +TGGEP L+ D
Sbjct: 24 DRCNFFCMYCRTKDLYYE--RIDQLSKEEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 78
Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137
+ +I+ + G E I + TNG ++ + I K+
Sbjct: 79 IVEIIEFAHSIGIENINITTNGWLDTEKIKKIIKSPLKS 117
>gi|282164510|ref|YP_003356895.1| hypothetical protein MCP_1840 [Methanocella paludicola SANAE]
gi|282156824|dbj|BAI61912.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 383
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC ++C +C + +VD + +++E E
Sbjct: 12 GCP-----------SKCSYC-----WSSDPDSPKMSVDTIKEVVEWLKEFRPGEAVTFTF 55
Query: 91 TGGEPLL-------QVDVPLIQALNKRGFEIAVETN 119
GGEPLL + L ++L R A++TN
Sbjct: 56 HGGEPLLAGADFYNKSLALLSKSLKDRKIAFAMQTN 91
>gi|260221009|emb|CBA29146.1| Molybdenum cofactor biosynthesis protein A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 385
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 21/134 (15%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNV----DQLADLIEEQWITGEKEGRYCVLTGGEPL 96
DR + +C +C V + ++ +++ L ++ G ++ R LTGGEPL
Sbjct: 55 DRCNFRCSYCMPKEVFHKDYPYLPHSALLSFEEITTLAKQFVALGVQKIR---LTGGEPL 111
Query: 97 LQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLK 142
L+ ++ + ++ + TNG+ G+ + VS D
Sbjct: 112 LRKNIETLIEQLAAITTPEGHALDLTLTTNGSLLAKKARSLKDAGLQRVTVSLDGLDDRI 171
Query: 143 IKGGQELKLVFPQV 156
K ++ V
Sbjct: 172 FKAMNDVDFPVADV 185
>gi|171320975|ref|ZP_02909966.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MEX-5]
gi|171093770|gb|EDT38910.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MEX-5]
Length = 372
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN G R S D+ + + R + QL + G ++ R LT
Sbjct: 50 CNFRCGYCMPRDSFG-----PDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LT 99
Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
GGEPLL+ ++ + + EIA+ TNG+ G+ + VS A
Sbjct: 100 GGEPLLRRNLEALIERLATLTTIDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDA 159
Query: 138 GCDLKIKGGQELKLVFPQV 156
D+ + + + +V
Sbjct: 160 IDDVVFRRMSDADVPVARV 178
>gi|220925816|ref|YP_002501118.1| pyrroloquinoline quinone biosynthesis protein PqqE
[Methylobacterium nodulans ORS 2060]
gi|254782812|sp|B8ITV7|PQQE_METNO RecName: Full=Coenzyme PQQ synthesis protein E; AltName:
Full=Pyrroloquinoline quinone biosynthesis protein E
gi|219950423|gb|ACL60815.1| coenzyme PQQ biosynthesis protein E [Methylobacterium nodulans ORS
2060]
Length = 379
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 14/134 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R +C +C + + + ++ E + L+GGEP + D+
Sbjct: 21 RCPLRCPYCSNPLELDK--RSAELDTATWQRVLAE---AAALGVLHIHLSGGEPTARQDI 75
Query: 102 -PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ + G + T+G G+D + +S ++ + LK
Sbjct: 76 VEITRTCADLGLYSNLITSGVGAALGKLEALYDAGLDHVQLSFQSAEAGNAERIGGLKNA 135
Query: 153 FPQVNVSPENYIGF 166
Q E +
Sbjct: 136 QAQKFAFAERVVAL 149
>gi|134277196|ref|ZP_01763911.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 305]
gi|134250846|gb|EBA50925.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 305]
Length = 377
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 52 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 111
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 112 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDALFKR 171
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 172 MNDADFASADV 182
>gi|54024605|ref|YP_118847.1| hypothetical protein nfa26360 [Nocardia farcinica IFM 10152]
gi|54016113|dbj|BAD57483.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 526
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL +C C F G V + ++++
Sbjct: 126 LAGCNL-----------RCPTC---FADSTPELAGVVAVADVLANVDQRLAREHGRLDVL 171
Query: 89 VLTGGEPLLQVDVPLIQALNKRGF--EIAVETNG 120
+L+GGEP L D+P + A I + TNG
Sbjct: 172 MLSGGEPTLHPDLPTLLAELTARPITRILINTNG 205
>gi|118475331|ref|YP_891425.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus
subsp. fetus 82-40]
gi|261886248|ref|ZP_06010287.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus
subsp. venerealis str. Azul-94]
gi|166217242|sp|A0RMJ2|MOAA_CAMFF RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|118414557|gb|ABK82977.1| molybdenum cofactor biosynthesis protein A [Campylobacter fetus
subsp. fetus 82-40]
Length = 322
Score = 38.3 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
+R + +CR+C D + +++ + I+ I + + LTGGEPL++
Sbjct: 19 ERCNFRCRYCMPDEPFKDAGHSNVLSYEEMFEFIK---ICLDNGVKKIRLTGGEPLVRKG 75
Query: 101 VPLIQAL---NKRGFEIAVETNGTI 122
V A+ K G ++A+ TNG
Sbjct: 76 VENFVAMINGYKSGLDLAMTTNGYF 100
>gi|218708057|ref|YP_002415576.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
UMN026]
gi|293403048|ref|ZP_06647145.1| yjjW protein [Escherichia coli FVEC1412]
gi|298378575|ref|ZP_06988459.1| yjjW protein [Escherichia coli FVEC1302]
gi|218435154|emb|CAR16112.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
UMN026]
gi|291429963|gb|EFF02977.1| yjjW protein [Escherichia coli FVEC1412]
gi|298280909|gb|EFI22410.1| yjjW protein [Escherichia coli FVEC1302]
Length = 287
Score = 38.3 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVNGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|302348233|ref|YP_003815871.1| radical SAM domain protein [Acidilobus saccharovorans 345-15]
gi|302328645|gb|ADL18840.1| radical SAM domain protein [Acidilobus saccharovorans 345-15]
Length = 260
Score = 38.3 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 15/143 (10%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC+L G FC + + G Q + I I K L
Sbjct: 50 GCDLSCG-----------FCWSWRFRDNISLGKFMTPQQAFNAI--YSIAKSKGFTQVRL 96
Query: 91 TGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+G EP + + + LI+ ++RG +ETNG + ++ +++
Sbjct: 97 SGAEPTISRRHLLDLIELFDERGITFVLETNGLLIGNDPSYAKDLAAHPNVVVRVSFKGT 156
Query: 149 LKLVFPQVNVSPENYIGFDFERF 171
F ++ + + F
Sbjct: 157 NAEEFHRLTGARAEFFELQFRAI 179
>gi|147677019|ref|YP_001211234.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
gi|146273116|dbj|BAF58865.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
Length = 463
Score = 38.3 bits (88), Expect = 0.71, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G R + +C FC F G G ++D + +
Sbjct: 78 GCPFDCGLCPAHRQLTCCVLLEVTGRCNLKCPFC---FAG-AGNGDADPDLDTIRNWYRR 133
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
G L+GGEP L+ D+P L+ GF I + TNG
Sbjct: 134 LLDAG--GPFNVQLSGGEPTLRDDLPELVALGRSMGFSYIQLNTNG 177
>gi|229134405|ref|ZP_04263218.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-ST196]
gi|228649026|gb|EEL05048.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-ST196]
Length = 147
Score = 38.3 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNVCNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
IE +T +GG+P Q
Sbjct: 52 EIESNSLTD------VTFSGGDPFFQ 71
>gi|296875656|ref|ZP_06899725.1| probable transcriptional regulator [Streptococcus parasanguinis
ATCC 15912]
gi|296433340|gb|EFH19118.1| probable transcriptional regulator [Streptococcus parasanguinis
ATCC 15912]
Length = 431
Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 11/117 (9%)
Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ +C++C + + D + ++E+ +G+ + GGEPLL
Sbjct: 86 HGDCNFRCKYC---YEKFENIAMSTETEDAIVQFLKEKLQSGKYKYLSVGWFGGEPLLGY 142
Query: 100 DVPLI--------QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+ ++ A+ TNG + ++ K G E
Sbjct: 143 KTIKRLSPVFIDLCEKYQIHYQSAITTNGYLLTKNKFRYLNEKFKVTSYQITLDGDE 199
>gi|146282425|ref|YP_001172578.1| pyrroloquinoline quinone biosynthesis protein PqqE [Pseudomonas
stutzeri A1501]
gi|145570630|gb|ABP79736.1| coenzyme PQQ synthesis protein E [Pseudomonas stutzeri A1501]
Length = 381
Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 27 CRF--SGCNLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
R SG +W E + QC FC + + + D++ +
Sbjct: 8 LRLDGSGNPVWLLLELTYQCPLQCVFCSNPRNFAD-YRPDELSTAEWIDVMAQ---ARAM 63
Query: 84 EGRYCVLTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
+GGEP L+ D+ + A R G+ + T+G
Sbjct: 64 GAVQIGFSGGEPTLRKDLETLVAEADRMGYYTNLITSG 101
>gi|325525113|gb|EGD03003.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. TJI49]
Length = 355
Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE I +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHSALLTHEEIERVARIFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIERLARLTTRDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|284047487|ref|YP_003397826.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
gi|283951708|gb|ADB46511.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
Length = 280
Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 2/117 (1%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-- 100
S +C FC + G + R +D + T EPL+ +
Sbjct: 75 CSFRCPFCQNASIAQAGAETARLRLDPEQLQALALESREKAGSIGVAFTYNEPLVGYEYV 134
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
+ L G + TNG + + + A DLK + + V ++
Sbjct: 135 RDCARLLKSHGLATVLVTNGFLCREPWEKLLPLVDAANIDLKGFTPEFYRWVGGDLD 191
>gi|242280985|ref|YP_002993114.1| glycyl-radical enzyme activating protein [Desulfovibrio salexigens
DSM 2638]
gi|242123879|gb|ACS81575.1| glycyl-radical enzyme activating protein family [Desulfovibrio
salexigens DSM 2638]
Length = 297
Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 65/233 (27%), Gaps = 59/233 (25%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC------------ 50
G G VF GC L + S Q C C
Sbjct: 16 DGPGLRT---TVF--LKGCPLTCLWCSNPESQQVKAQMMCFTDLCTGCGKCAEVCPNDAV 70
Query: 51 ---------DTDFVGIQG------------TKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
DT+ G G V+++ D++ + + + G
Sbjct: 71 IEIEGRFGRDTEKCTNCGACTENCAGKAREMSGKIMTVEEVMDVVRKDALFYDNSGGGVT 130
Query: 90 LTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
GGEP Q + +++A G+ + V+T G + I ++ D K +
Sbjct: 131 FGGGEPTSGGQFFLDMVEAAVNEGYHVTVDTCGYCPEERFDKTIKLADLFLFDCKHMNPE 190
Query: 148 ELKLVFPQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCF 193
E K + N +G R L P EEN +
Sbjct: 191 EHKKLTGVDNAIILRNMGAALSSGKEVRIRMPLMPEMN-DSEENIAAMAEFLK 242
>gi|120602623|ref|YP_967023.1| radical SAM domain-containing protein [Desulfovibrio vulgaris DP4]
gi|120562852|gb|ABM28596.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
Length = 543
Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 23/111 (20%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFC------DTDFVGIQGTKGGRYNVDQL 70
GC G R + +CR+C D G + L
Sbjct: 81 GCPFDCGLCPQHNQHTCTAVFEVTTRCNLRCRYCFAAAQDDETQTLQPSAHVGDPPLHTL 140
Query: 71 ADLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNG 120
L+E L+GGEP L ++ + + + TNG
Sbjct: 141 VALLEAVRQKTGPCN--IQLSGGEPTLRHDLCDIVSHARRLFPFVQLNTNG 189
>gi|91773213|ref|YP_565905.1| radical SAM family Fe-S protein [Methanococcoides burtonii DSM
6242]
gi|91712228|gb|ABE52155.1| Radical SAM family protein [Methanococcoides burtonii DSM 6242]
Length = 346
Score = 38.3 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL CR G + + ++E E +L
Sbjct: 15 GCNLAC--------VHCRG-----SSTSEIPEGELSTSEAKHFVDEIV---EMGDPILIL 58
Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
TGGEPL++ DV + + +G +A+ TNG
Sbjct: 59 TGGEPLVRKDVYEIARYATDKGLRVALATNG 89
>gi|330836992|ref|YP_004411633.1| aspartate carbamoyltransferase [Spirochaeta coccoides DSM 17374]
gi|329748895|gb|AEC02251.1| aspartate carbamoyltransferase [Spirochaeta coccoides DSM 17374]
Length = 538
Score = 38.3 bits (88), Expect = 0.74, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 11/48 (22%)
Query: 16 EGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
E H G A+F R + +C +CDT + KG
Sbjct: 493 ESLHEGVPAMFRRTA-----------DDKFECAWCDTVHGFKEIWKGA 529
>gi|290581007|ref|YP_003485399.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
mutans NN2025]
gi|254997906|dbj|BAH88507.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
mutans NN2025]
Length = 258
Score = 38.3 bits (88), Expect = 0.74, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 51/172 (29%), Gaps = 31/172 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCSNPESQKYKPEQMLDAETKLPMI 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G V+ + +++ E+ G L+GGE Q + +++ + G A+ET
Sbjct: 62 IGEEKTVEDIISEVKKDIDFYEESGGGLTLSGGEIFAQFEFAKAILKCAKEEGLHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
E + D I DLK + V N I + F
Sbjct: 122 TAFAEHEKFTDLIQYVNFIYTDLKHYNTIRHRKVTGVNNNLIIQNIHYAFTH 173
>gi|91214094|ref|YP_544080.1| hypothetical protein UTI89_C5149 [Escherichia coli UTI89]
gi|110644816|ref|YP_672546.1| hypothetical protein ECP_4763 [Escherichia coli 536]
gi|117626737|ref|YP_860060.1| hypothetical protein APECO1_2002 [Escherichia coli APEC O1]
gi|191173134|ref|ZP_03034666.1| radical SAM domain protein [Escherichia coli F11]
gi|91075668|gb|ABE10549.1| hypothetical protein YjjW [Escherichia coli UTI89]
gi|110346408|gb|ABG72645.1| hypothetical protein YjjW [Escherichia coli 536]
gi|115515861|gb|ABJ03936.1| hypothetical protein APECO1_2002 [Escherichia coli APEC O1]
gi|190906519|gb|EDV66126.1| radical SAM domain protein [Escherichia coli F11]
gi|294492420|gb|ADE91176.1| radical SAM domain protein [Escherichia coli IHE3034]
gi|307629548|gb|ADN73852.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
UM146]
gi|323950535|gb|EGB46413.1| radical SAM superfamily protein [Escherichia coli H252]
Length = 287
Score = 38.3 bits (88), Expect = 0.74, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|217970619|ref|YP_002355853.1| radical SAM protein [Thauera sp. MZ1T]
gi|217507946|gb|ACK54957.1| Radical SAM domain protein [Thauera sp. MZ1T]
Length = 374
Score = 38.3 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 24/176 (13%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL C+FC + + A++ E
Sbjct: 92 TAGCNLA-----------CKFCQNWDISKSRDLDTLMDEASPAEIAE---TALRWGCHSV 137
Query: 89 VLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T +P++ + + A + RG + T G I D+ A DLK
Sbjct: 138 AFTYNDPVIFAEYAMDVADACHARGLKTVAVTAGYISECARRDFFSRMDAANVDLKGFTD 197
Query: 147 Q--------ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
L+ V + + L P E T LA +
Sbjct: 198 DFYVKLCGAHLQPVLDTLVWLRHETDVWVELTTLLIPGHNDSDSEVTALANWVRKE 253
>gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2]
gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2]
Length = 302
Score = 38.3 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 51 DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALN 108
D G ++ ++AD+ + ++ G +GGEPL Q + L
Sbjct: 93 DVCCANAIEMVGKTFSPREVADITLKDVAFYDESGGGVTFSGGEPLFQWQFVRECSKLLR 152
Query: 109 KRGFEIAVETNGT 121
KRG IA+ET+G
Sbjct: 153 KRGVHIAMETSGC 165
>gi|163941208|ref|YP_001646092.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus weihenstephanensis KBAB4]
gi|163863405|gb|ABY44464.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus weihenstephanensis KBAB4]
Length = 150
Score = 38.3 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNVCNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
IE +T +GG+P Q
Sbjct: 55 EIESNSLTD------VTFSGGDPFFQ 74
>gi|228986690|ref|ZP_04146820.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228773021|gb|EEM21457.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 147
Score = 38.3 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++ +
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGIEMTVEEIVE 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P LQ
Sbjct: 52 EI------ASNPLTDVTFSGGDPFLQ 71
>gi|323190345|gb|EFZ75621.1| radical SAM superfamily protein [Escherichia coli RN587/1]
Length = 287
Score = 38.0 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIIDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|289523143|ref|ZP_06439997.1| glutamate 5-kinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503686|gb|EFD24850.1| glutamate 5-kinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 329
Score = 38.0 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 28/154 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADLIEEQWITGEKEGRYC 88
GCN +C FC + + R + +L L+++ +T
Sbjct: 80 GCN-----------MRCPFCQNWHISTWSPQIKLSRIDPLELLSLVKKYNVTA------V 122
Query: 89 VLTGGEPLL--QVDVPLIQALNKRGFEIAVETNGTIEPPQGIDW------ICVSPKA-GC 139
T EPL+ + + I L K ++ + TNG I + V K
Sbjct: 123 AFTYNEPLISYEYLLEAIPLLKKENVKVVLVTNGLINTLPLKEIAHRIDAANVDLKTFNE 182
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ K G +LK V + + + + +
Sbjct: 183 ETYKKLGGDLKTVLKTLQILKSFNVHIEITHLLV 216
>gi|302883056|ref|XP_003040432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256721312|gb|EEU34719.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 833
Score = 38.0 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE---KEGRYCVLTGGEPLLQ 98
R + C +C V V+ + D + Q + + V++GGEP +
Sbjct: 644 RCNLACPWCHNGPV-----------VNGVRDDVTAQDVFRHITSTSHKCLVISGGEPTIH 692
Query: 99 V-DVPLIQALNKRGFEIAVETNGTIEPP 125
+P ++ L K G I +++NGT
Sbjct: 693 KGLLPFMRLLKKAGVTIKLDSNGTSPEI 720
>gi|149920733|ref|ZP_01909197.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis
pacifica SIR-1]
gi|149818386|gb|EDM77837.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis
pacifica SIR-1]
Length = 318
Score = 38.0 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 32 CN---LWSGREQDRLSAQCRFC----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
C L G E ++C C D G + D L + E
Sbjct: 69 CPEGALGLGVEGRVDWSKCTGCGACVDACPAQALTQVGAHVDADALLTTLLRDRPFFESS 128
Query: 85 GRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEP 124
G +GGEP+L + L+ L + G +ET G
Sbjct: 129 GGGVTFSGGEPVLHEAFLLELLPRLGEAGISRCIETAGAYPF 170
>gi|147920417|ref|YP_685808.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon
RC-I]
gi|110621204|emb|CAJ36482.1| hypothetical protein RCIX1164 [uncultured methanogenic archaeon
RC-I]
Length = 340
Score = 38.0 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 46 QCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDVPLI 104
+C +C + T G + A + + E R ++GGEPLL+ ++
Sbjct: 24 RCLYCYNVWKCHGRTAPGDLPAPEWAKITGKL--QRESSVRLITVSGGEPLLREDLPEIL 81
Query: 105 QALNKRGFEIAVETNG 120
+ RG +I + TNG
Sbjct: 82 GDIKTRGIDINLITNG 97
>gi|53803496|ref|YP_114807.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath]
gi|53757257|gb|AAU91548.1| MoaA/NifB/PqqE family protein [Methylococcus capsulatus str. Bath]
Length = 455
Score = 38.0 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 27/167 (16%)
Query: 28 RFS-----GCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVD 68
RF+ GC G D + +C C + G ++D
Sbjct: 75 RFATPMARGCPWDCGLCPDHMQHSCVTVLEVTGHCNLRCPVC---YAGSGPDNPSYRSLD 131
Query: 69 QLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQ 126
++ +++ + E E ++GGEP L +++ +R + V TNG +
Sbjct: 132 EIGRMLD-TIVENEGEPDVVQISGGEPTLHPRFFDILKEARRRPIRHLMVNTNGIVLARD 190
Query: 127 GIDWICVSPKAGCDLKIKGGQELKLVFPQV--NVSPENYIGFDFERF 171
++ L + E
Sbjct: 191 PDFARRLAEFGPGLEVYLQFDSLDDAVLRQLRGADLARIHEQALEHL 237
>gi|88800258|ref|ZP_01115825.1| Molybdenum cofactor biosynthesis enzyme [Reinekea sp. MED297]
gi|88776973|gb|EAR08181.1| Molybdenum cofactor biosynthesis enzyme [Reinekea sp. MED297]
Length = 322
Score = 38.0 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 17/114 (14%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WI 79
GR + R S D + +C +C G +G A +E
Sbjct: 7 GRRFYYLRLS--------VTDVCNFRCSYC-----LPDGYQGKPDEAFLSASELEAAVRG 53
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGF-EIAVETNGTIEPPQGIDW 130
+ + LTGGEP L+ D+P + + G IAV TNG P + W
Sbjct: 54 FAQMGTQKIRLTGGEPGLRSDLPEIIYRLNRIDGINNIAVTTNGYKLPQRIQHW 107
>gi|332035078|gb|EGI71594.1| radical SAM family enzyme [Pseudoalteromonas haloplanktis ANT/505]
Length = 378
Score = 38.0 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 10/127 (7%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV-LT 91
L +C +CD + G +G V L D ++ + + + +
Sbjct: 5 PLSLYVHVPWCVQKCPYCDFNSHGQKGEIPEAEYVQHLIDDLKADLHLVQGRKIHSIFIG 64
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
GG P L + LN+ I +E I + G + +K
Sbjct: 65 GGTPSLLTGAAYTRLLNEVDNLIGLE---------EHCEITLEANPGTVETGRFKDYVKA 115
Query: 152 VFPQVNV 158
++++
Sbjct: 116 GINRISI 122
>gi|218960362|ref|YP_001740137.1| hypothetical protein CLOAM0012 [Candidatus Cloacamonas
acidaminovorans]
gi|167729019|emb|CAO79930.1| hypothetical protein CLOAM0012 [Candidatus Cloacamonas
acidaminovorans]
Length = 335
Score = 38.0 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
L S D + +C +C+ F N D LIE ++G
Sbjct: 57 PLLSVDITDACNLRCIYCNNPFF---PYPRTMMNQDVFKALIERL---KRHPVSRIRISG 110
Query: 93 GEPLLQVDVPLI-QALNKRGFEIAVETNGTIEPPQ 126
GEP L + + ++ +++ TNG + P+
Sbjct: 111 GEPTLHPQFDTMLKEMSYYCKYLSIITNGQWQNPE 145
>gi|154150386|ref|YP_001404004.1| radical SAM domain-containing protein [Candidatus Methanoregula
boonei 6A8]
gi|153998938|gb|ABS55361.1| Radical SAM domain protein [Methanoregula boonei 6A8]
Length = 487
Score = 38.0 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 32 CNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKG-GRYNVDQLADLIEEQWI 79
C G + L+ +C CD F + + D++ +++
Sbjct: 76 CPTACGLCSNHHSGTLLANIDLTNRCNLDCDFCFANARACGFVYEPSFDEIVGMMQVLRS 135
Query: 80 TGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
+GGEP ++ D+ +++ + GF ++ + TNG
Sbjct: 136 EKPVPAPAVQFSGGEPTMRDDLVEIVKKAKELGFPQVQIATNG 178
>gi|119871571|ref|YP_929578.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
4184]
gi|119672979|gb|ABL87235.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
Length = 389
Score = 38.0 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C ++ + L+++ E + T
Sbjct: 58 CNLKC--------LHC------YIDAGAEDPRELTTAEALALVDQM---AEVGVPLILFT 100
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
GGEPL++ D + + G ++ + TNGT+ P+
Sbjct: 101 GGEPLVRQDFFEIAERARDAGIKLVLSTNGTLITPE 136
>gi|86156515|ref|YP_463300.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773026|gb|ABC79863.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
Length = 356
Score = 38.0 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 15/116 (12%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ + + + D++ L E
Sbjct: 80 TAGCNLGCRFCQNWDI-------SKARLDELRSEVDWTPDRVVALAREA------GCPGI 126
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
T +P++ + + + A + G + TNG + P D + A DLK
Sbjct: 127 AFTYNDPIIWAEYAIDVADAAHAAGLFTVLVTNGYVSPEARRDLFSRADAANVDLK 182
>gi|73668723|ref|YP_304738.1| molybdenum cofactor biosynthesis protein A [Methanosarcina barkeri
str. Fusaro]
gi|72395885|gb|AAZ70158.1| GTP cyclohydrolase subunit MoaA [Methanosarcina barkeri str.
Fusaro]
Length = 332
Score = 38.0 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + C C G G + + +I+E G + ++ +
Sbjct: 40 CNLSCMYCHNEGADCCT-C--------GPIGHEMKPELICGIIKEAEKFGVNKIKF---S 87
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPL + D I A E++ TNG
Sbjct: 88 GGEPLFRKDFEEILACLPPLKEVSATTNG 116
>gi|172065715|ref|YP_001816427.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MC40-6]
gi|171997957|gb|ACB68874.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MC40-6]
Length = 371
Score = 38.0 bits (87), Expect = 0.78, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 24/139 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN G R S D+ + + R + QL + G ++ R LT
Sbjct: 49 CNFRCGYCMPRDSFG-----PDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LT 98
Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
GGEPLL+ ++ + + EIA+ TNG+ G+ + VS A
Sbjct: 99 GGEPLLRRNLEALIERLATLTTVDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDA 158
Query: 138 GCDLKIKGGQELKLVFPQV 156
D + ++++ +V
Sbjct: 159 IDDTVFRRMSDVEVPVARV 177
>gi|269137809|ref|YP_003294509.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella
tarda EIB202]
gi|267983469|gb|ACY83298.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella
tarda EIB202]
gi|304557864|gb|ADM40528.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
FL6-60]
Length = 299
Score = 38.0 bits (87), Expect = 0.78, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 23 VAVFCRF-SGCNLWSGREQDRLSAQ---CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
AV R G L R + C C + + + G V+++ E
Sbjct: 63 PAVAIRTGQGLTLLRQRADADTLERLRDC--CPSQALTVCGEA---LAVEEILRQAERDR 117
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEP 124
++ G L+GGEP +Q + + ++ G AVET +
Sbjct: 118 PFYQRSGGGITLSGGEPFMQPTLAETLLRRCHQSGIHTAVETCLHVPW 165
>gi|15789414|ref|NP_279238.1| hypothetical protein VNG0085G [Halobacterium sp. NRC-1]
gi|10579736|gb|AAG18718.1| molybdenum cofactor biosynthesis protein [Halobacterium sp. NRC-1]
Length = 367
Score = 38.0 bits (87), Expect = 0.78, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 17/174 (9%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G R N ++ + E LTGGEP+L+
Sbjct: 29 DRCNFDCVYCHNEGLGDTRGPIDPRENELSTDRVVRFLSVAHEFGVDAVKLTGGEPMLRS 88
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKI---KGGQEL 149
D+ I +++ TNGT P G++ + +S A +
Sbjct: 89 DLEAIIRRTPDDMAVSMTTNGTFLPGRAADLVDAGLERVNISQDAMDNDAFAELTQSGAY 148
Query: 150 KLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
V V + +P G + + RL +
Sbjct: 149 DAVLEGVEAALDAGLAPVKLNMVVFEPTAG-----YVPEMVDHVAARDGLRLQL 197
>gi|169235126|ref|YP_001688326.1| molybdenum cofactor biosynthesis protein moaA [Halobacterium
salinarum R1]
gi|24212011|sp|Q9HST4|MOAA_HALSA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|226704849|sp|B0R2L5|MOAA_HALS3 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|167726192|emb|CAP12969.1| molybdenum cofactor biosynthesis protein moaA [Halobacterium
salinarum R1]
Length = 357
Score = 38.0 bits (87), Expect = 0.78, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 17/174 (9%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G R N ++ + E LTGGEP+L+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPIDPRENELSTDRVVRFLSVAHEFGVDAVKLTGGEPMLRS 78
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKI---KGGQEL 149
D+ I +++ TNGT P G++ + +S A +
Sbjct: 79 DLEAIIRRTPDDMAVSMTTNGTFLPGRAADLVDAGLERVNISQDAMDNDAFAELTQSGAY 138
Query: 150 KLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
V V + +P G + + RL +
Sbjct: 139 DAVLEGVEAALDAGLAPVKLNMVVFEPTAG-----YVPEMVDHVAARDGLRLQL 187
>gi|256025298|ref|ZP_05439163.1| putative activating enzyme [Escherichia sp. 4_1_40B]
Length = 287
Score = 38.0 bits (87), Expect = 0.79, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIIDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|189025041|ref|YP_001935809.1| Proline-rich extensin [Brucella abortus S19]
gi|189020613|gb|ACD73335.1| Proline-rich extensin [Brucella abortus S19]
Length = 184
Score = 38.0 bits (87), Expect = 0.79, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 68 DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGT--IEPP 125
+ + E +K L+GG P +Q LI+ G+ A+ET G+ +
Sbjct: 1 MSVEAIWHEVTALSQKRPLTVSLSGGNPAIQPLGALIKHGKAEGYRFALETQGSVAKDWF 60
Query: 126 QGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+D + +SPK L P + F
Sbjct: 61 SRLDTLVLSPKPPSSAMETDWDMLAACIEAAGTGPRTVLKF 101
>gi|168234700|ref|ZP_02659758.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194736787|ref|YP_002117480.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|204926825|ref|ZP_03218027.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|194712289|gb|ACF91510.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197291691|gb|EDY31041.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204323490|gb|EDZ08685.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|322615730|gb|EFY12650.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322620578|gb|EFY17438.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322621795|gb|EFY18645.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322627520|gb|EFY24311.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322630827|gb|EFY27591.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322637955|gb|EFY34656.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322642225|gb|EFY38833.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644946|gb|EFY41478.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322651110|gb|EFY47495.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322656634|gb|EFY52922.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658708|gb|EFY54965.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322661850|gb|EFY58066.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322666404|gb|EFY62582.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322672440|gb|EFY68552.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676252|gb|EFY72323.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322679659|gb|EFY75704.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322684369|gb|EFY80373.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323191851|gb|EFZ77100.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323196678|gb|EFZ81825.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323200947|gb|EFZ86016.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323209344|gb|EFZ94277.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212969|gb|EFZ97771.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323216712|gb|EGA01437.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323223328|gb|EGA07665.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323226145|gb|EGA10362.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323228798|gb|EGA12927.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323236591|gb|EGA20667.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323239909|gb|EGA23956.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323242044|gb|EGA26073.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323247515|gb|EGA31470.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323250617|gb|EGA34499.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323259346|gb|EGA42988.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323263776|gb|EGA47297.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323265630|gb|EGA49126.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323270075|gb|EGA53523.1| putative pyruvate formate lyase activating enzyme [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 287
Score = 38.0 bits (87), Expect = 0.79, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 53/197 (26%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQRATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N + I F R
Sbjct: 188 GRDNTHIKRSIRFLAAR 204
>gi|150389760|ref|YP_001319809.1| glycyl-radical activating family protein [Alkaliphilus
metalliredigens QYMF]
gi|149949622|gb|ABR48150.1| glycyl-radical enzyme activating protein family [Alkaliphilus
metalliredigens QYMF]
Length = 301
Score = 38.0 bits (87), Expect = 0.80, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 72/226 (31%), Gaps = 53/226 (23%)
Query: 21 GRVAVFCRFSGCNLWSGR---------------------EQDRLSAQCRF---------- 49
G V F+GC L + +R C +
Sbjct: 21 GIRTV-IFFAGCPLKCQWCSNPEGYTSSNKVAYYKKICMKCERCIQVCPYKVGMDLNSPL 79
Query: 50 ----CDTDFVGIQ--GTKGGR-----YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
C + + ++ T + YN +Q+ +IE+Q I G +GGE LQ
Sbjct: 80 ERIRCKSCGICVKLCPTNSRKNLIYYYNTEQILKMIEKQEIFYRYSGGGVTFSGGEAALQ 139
Query: 99 --VDVPLIQALNKRGFEIAVETNGTIEPPQGIDW------ICVSPKAGCDLKIKGGQELK 150
+ L+ L + ++A+ET+G D I + K D K + L+
Sbjct: 140 ADILRDLVCKLYDKAIDLAIETSGYFNFDDMKDILEKLNLIFIDIKHMDDKKHRFYTGLR 199
Query: 151 LVFPQVNVSPENYIGFDFERFSLQPMDGPFLE-ENTNLAISYCFQN 195
N+ N + + +DG + EN + N
Sbjct: 200 NTKILNNILRLNELKVAV-VVRIPVIDGVNSDVENIRRTAKFVKSN 244
>gi|224024568|ref|ZP_03642934.1| hypothetical protein BACCOPRO_01294 [Bacteroides coprophilus DSM
18228]
gi|224017790|gb|EEF75802.1| hypothetical protein BACCOPRO_01294 [Bacteroides coprophilus DSM
18228]
Length = 365
Score = 38.0 bits (87), Expect = 0.80, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
R + C+ C +D + +I+ + TGGEPL++
Sbjct: 39 CTQRCNIHCKHCGSDCKSTA--EIPDMPAADFLRVIDSLTPHVNPHEVNIIFTGGEPLVR 96
Query: 99 -VDVPLIQALNKRGFEIAVETNGTI 122
+ QAL RG+ ++ TNG
Sbjct: 97 KDLEEVGQALYHRGYPWSMVTNGLY 121
>gi|218289231|ref|ZP_03493466.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
acidocaldarius LAA1]
gi|218240579|gb|EED07759.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
acidocaldarius LAA1]
Length = 341
Score = 38.0 bits (87), Expect = 0.80, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 20/168 (11%)
Query: 41 DRLSAQCRFC-DTDFVGIQGT---KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
DR + +C +C +D G + D++A L+ G ++ R LTGGEPL
Sbjct: 25 DRCNFRCPYCMPSDVFGPDYPFLRPDALMSPDEIAKLVRALVPLGLEKVR---LTGGEPL 81
Query: 97 LQVDVPLIQALNKR---GFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLKIKG 145
L+ +V I EIA+ TNG G+ I VS A
Sbjct: 82 LRREVIEIVEKVAAVPGLHEIAMTTNGSLLTREKAMSLKRAGLTRITVSLDALRPDVAAR 141
Query: 146 GQELKLVFPQV--NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
++ +V + + G + ++ G +E +A +
Sbjct: 142 MNGVRFPVHRVLSAIEAADEAGLAPVKVNVVVRRGWNEDEVVAIAERF 189
>gi|78187401|ref|YP_375444.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
gi|78167303|gb|ABB24401.1| GTP cyclohydrolase subunit MoaA [Chlorobium luteolum DSM 273]
Length = 339
Score = 38.0 bits (87), Expect = 0.80, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 24/145 (16%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
R CNL +C +C GT + ++ +I G K+ R
Sbjct: 28 RL--CNL-----------RCSYC-MREEHESGTAAAMMSFSEVTAIIRALAAMGIKKVR- 72
Query: 88 CVLTGGEPLLQVDVP--LIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
LTGGEPLL+ D+ ++ A G ++ + TNG + +AG D
Sbjct: 73 --LTGGEPLLRNDISDIVLAAKQTPGIEKVTLTTNGLLLDRHLDRL----LEAGIDAINI 126
Query: 145 GGQELKLVFPQVNVSPENYIGFDFE 169
L+ Q + Y
Sbjct: 127 SIDSLQPKRYQAIARRDEYSRVKAN 151
>gi|315649901|ref|ZP_07902983.1| molybdenum cofactor biosynthesis protein A [Paenibacillus vortex
V453]
gi|315274700|gb|EFU38082.1| molybdenum cofactor biosynthesis protein A [Paenibacillus vortex
V453]
Length = 334
Score = 38.0 bits (87), Expect = 0.81, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 22/175 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + +G + ++ + ++ + LTGGEPL++
Sbjct: 22 DRCNLRCVYC----MPEEGMEFQPHDQIMSYEEIAAILRVLAPMGVSKVRLTGGEPLVRK 77
Query: 100 DVPLIQALNK--RGFE-IAVETNGTIEPP-------QGIDWICVSPKAGCDLKI---KGG 146
D+ + + G + I++ TNG + P G+ I +S + + + G
Sbjct: 78 DLENLVRMIASIEGIQDISLTTNGIMLPSKARLLKEAGLTRINISLDSLHEERYARITRG 137
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP-KWRL 200
+ V + + E G D + ++ M G +E + I+ P R
Sbjct: 138 GHVSKVLEGIEAAYE--AGLDPIKLNMVLMKGFNEDEIRDF-IAMTLDRPLHVRF 189
>gi|305679890|ref|ZP_07402700.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Corynebacterium matruchotii ATCC 14266]
gi|305660510|gb|EFM50007.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Corynebacterium matruchotii ATCC 14266]
Length = 225
Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F GC L +C +C +Q G ++ + L ++ +
Sbjct: 41 TIF--TQGCPL-----------RCVYCHNP--SLQAFGAGSHDFAEALALAVDRRSLIDG 85
Query: 84 EGRYCVLTGGEPLLQV-DVPLIQALNK-RGFEIAVETNGTIE 123
V++GGEP I A+++ G + + T G
Sbjct: 86 ----VVISGGEPTAVPGLADAIAAVHETAGLPVGLHTCGYSP 123
>gi|195541979|gb|ACF98177.1| putative heme D1 biosynthesis protein NirJ [uncultured bacterium
2303]
Length = 412
Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + D DF G T +D L +L+
Sbjct: 36 CNLACQHCYSISA------DVDFPGELATPDIYRTMDDL----------KAFGVPVLILS 79
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPLL D+ + Q GF + + TNG
Sbjct: 80 GGEPLLHPDIFAISQRAKAMGFYVGLSTNG 109
>gi|116749858|ref|YP_846545.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698922|gb|ABK18110.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 347
Score = 38.0 bits (87), Expect = 0.82, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +CR C + +D+ + ++ E V T
Sbjct: 20 CNL-----------RCRHC---ASSAGEARSNELTLDEALAICDQLPPLLVLE---VVFT 62
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPLL + + L + G + V TNG
Sbjct: 63 GGEPLLSPHWEAIARRLRELGIHVGVVTNG 92
>gi|294340360|emb|CAZ88741.1| Molybdenum cofactor biosynthesis protein A (Protein narA)
[Thiomonas sp. 3As]
Length = 378
Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 17/132 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + + + + ++ ++ I R LTGGEPLL+
Sbjct: 48 DRCNFRCTYCMPKEIFDKHYEFLSHADLLSFEEITRAARIFMSLGVRKIRLTGGEPLLRK 107
Query: 100 DVPLIQALNKRGFEI--------AVETNGTIEPPQGI-------DWICVSPKAGCDLKIK 144
++ + + G + TNG+I + D + VS A D +
Sbjct: 108 NLERLVEML-HGLRTPEGLAPELTLTTNGSILARKATLLKEARLDRVTVSLDALDDAAFR 166
Query: 145 GGQELKLVFPQV 156
++ +V
Sbjct: 167 QMNDVDFPVAEV 178
>gi|281492816|ref|YP_003354796.1| radical SAM superfamily Fe-S oxidoreductase [Lactococcus lactis
subsp. lactis KF147]
gi|281376468|gb|ADA65954.1| Fe-S oxidoreductase, radical SAM superfamily [Lactococcus lactis
subsp. lactis KF147]
Length = 439
Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 24/177 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + + ++ I Q E +
Sbjct: 117 CNL-----------HCGFC-----FLANREDENVHLADDWKKILSQ--AKENGILSFSIL 158
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEP D+ L++ ++ + TNG ID IC S + ++ + K
Sbjct: 159 GGEPTKYKDIDNLLKIIDSLKVVTTITTNGQEIKKSTIDIICQSDYITPVISLESIDDFK 218
Query: 151 LVF-----PQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
+ + ++ L + EE+ + + +N R S+
Sbjct: 219 NFELMGTRAKRGIELIKLFHERKKKVRLNTVYSNQSEEDIMELLKFAIKNEIDRFSI 275
>gi|170696802|ref|ZP_02887909.1| molybdenum cofactor biosynthesis protein A [Burkholderia graminis
C4D1M]
gi|170138291|gb|EDT06512.1| molybdenum cofactor biosynthesis protein A [Burkholderia graminis
C4D1M]
Length = 369
Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + LTGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYAFLPHSALLTFEEIERLARLFVAHGVEKIRLTGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIERLAQLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFAVADV 175
>gi|168230210|ref|ZP_02655268.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|194471790|ref|ZP_03077774.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|197249462|ref|YP_002149506.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|194458154|gb|EDX46993.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|197213165|gb|ACH50562.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|205334923|gb|EDZ21687.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
Length = 287
Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F +
Sbjct: 188 GRDNTHIKHSIRFLAAQ 204
>gi|170679719|ref|YP_001746834.1| radical SAM domain-containing protein [Escherichia coli SMS-3-5]
gi|170517437|gb|ACB15615.1| radical SAM domain protein [Escherichia coli SMS-3-5]
Length = 287
Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIIEGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|161617877|ref|YP_001591842.1| hypothetical protein SPAB_05744 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161367241|gb|ABX71009.1| hypothetical protein SPAB_05744 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 287
Score = 38.0 bits (87), Expect = 0.83, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F +
Sbjct: 188 GRDNTHIKHSIRFLAAQ 204
>gi|221201327|ref|ZP_03574366.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans CGD2M]
gi|221208807|ref|ZP_03581805.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans CGD2]
gi|221214113|ref|ZP_03587086.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans CGD1]
gi|221166290|gb|EED98763.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans CGD1]
gi|221171263|gb|EEE03712.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans CGD2]
gi|221178595|gb|EEE11003.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans CGD2M]
Length = 370
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE I +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPREVFGKDYPFLPHSALLTHEEIERVARIFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTRDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDALFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|167629515|ref|YP_001680014.1| pyruvate formate lyase-activating enzyme [Heliobacterium
modesticaldum Ice1]
gi|167592255|gb|ABZ84003.1| pyruvate formate lyase-activating enzyme [Heliobacterium
modesticaldum Ice1]
Length = 285
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 42/172 (24%), Gaps = 23/172 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN G FC + + + D+ L EE T
Sbjct: 81 GCNFDCG-----------FCQNYHIAQRDADSREISPDEAVALAEE---TKAYGNIGIAY 126
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EP + + G + + TNG IE + D+K
Sbjct: 127 TYSEPSVWFEYIYDTAPKVRAAGLKNVLVTNGYIEEAPLKALLPYIDAVNLDIKGFREDY 186
Query: 149 LKLVFPQ------VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
V + + P EE T+L +
Sbjct: 187 YACVCKGRLEPVLRSARLYKAACHLEITTLVVPGQNDSDEELTSL-FDWVAD 237
>gi|161525364|ref|YP_001580376.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans ATCC 17616]
gi|189349899|ref|YP_001945527.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans ATCC 17616]
gi|160342793|gb|ABX15879.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans ATCC 17616]
gi|189333921|dbj|BAG42991.1| molybdenum cofactor biosynthesis protein A [Burkholderia
multivorans ATCC 17616]
Length = 370
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE I +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPREVFGKDYPFLPHSALLTHEEIERVARIFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTREGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDALFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|42782671|ref|NP_979918.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 10987]
gi|42738597|gb|AAS42526.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 10987]
Length = 150
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 26/99 (26%)
Query: 1 MKLYSIKEIFLTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQG 59
MK+ +I I ++ GEG VF F+GC +C C
Sbjct: 1 MKVLNI--IHDSVVDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNI 41
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
G V+++ I +GG+P Q
Sbjct: 42 CNGTEMTVEEIVKEI------ASNPLTDVTFSGGDPFFQ 74
>gi|115360432|ref|YP_777569.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
AMMD]
gi|115285760|gb|ABI91235.1| GTP cyclohydrolase subunit MoaA [Burkholderia ambifaria AMMD]
Length = 372
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN G R S D+ + + R + QL + G ++ R LT
Sbjct: 50 CNFRCGYCMPRDSFG-----PDYAFMPSS--ERLSFAQLEKIARAFISLGVEKIR---LT 99
Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
GGEPLL+ ++ + + EIA+ TNG+ G+ + VS A
Sbjct: 100 GGEPLLRRNLEALIERLATLTTLDGKPVEIALTTNGSLLAAKARSLRDAGLSRVTVSLDA 159
Query: 138 GCDLKIKGGQELKLVFPQV 156
D + + + +V
Sbjct: 160 IDDAVFRRMSDADVPVARV 178
>gi|299531597|ref|ZP_07045002.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
S44]
gi|298720313|gb|EFI61265.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
S44]
Length = 380
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + I + R LTGGEPLL+
Sbjct: 48 DRCNFRCNYCMPKEVFDKNYQYLPHSSLLSFEEITRLARLFVAHGVRKLRLTGGEPLLRK 107
Query: 100 DVPLIQALNKR-------GFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + A ++ + TN + G++ + VS D +
Sbjct: 108 NIEALIAQLAELRTPDGQPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDDTVFRR 167
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ V E
Sbjct: 168 MNDVDFPVTDVLAGIEAAQTAGLSHI 193
>gi|255323614|ref|ZP_05364744.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter showae RM3277]
gi|255299328|gb|EET78615.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter showae RM3277]
Length = 228
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F+GCN +C +C + T G+ + + +++ + +
Sbjct: 29 FAGCN-----------MRCAYC---YNVSIVTGAGQISRAEFIKFLDK----RKGKLSGV 70
Query: 89 VLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDW 130
V +GGE L +PL + RGF + V+TNG+ G
Sbjct: 71 VFSGGECTLSPAFLPLASEVKSRGFSLKVDTNGSNLTALGQAI 113
>gi|161338490|emb|CAO03077.1| 1-methyl alkyl succinate synthase activase [Azoarcus sp. HxN1]
Length = 325
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G +VD++ ++E+ + + G L+GG+P D L++ +R ++TN
Sbjct: 115 GRTMSVDEIMTIVEQDMLFYKNSGGGFTLSGGDPTAFPDFSETLLREAKRRELHTCMDTN 174
Query: 120 GTIEPP 125
G
Sbjct: 175 GHCAWS 180
>gi|288817468|ref|YP_003431815.1| predicted Fe-S oxidoreductases [Hydrogenobacter thermophilus TK-6]
gi|76667607|dbj|BAE45632.1| hypothetical protein [Hydrogenobacter thermophilus]
gi|288786867|dbj|BAI68614.1| predicted Fe-S oxidoreductases [Hydrogenobacter thermophilus TK-6]
gi|308751075|gb|ADO44558.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
Length = 360
Score = 38.0 bits (87), Expect = 0.84, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 19/90 (21%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+ C + ++ L+ E ++ +L+
Sbjct: 33 CNL-----------HCKHC----YSSANKDKEELSYEEAISLVHRLP---EAGVKFTILS 74
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
GGEPLL+ + + L +RG + TNG
Sbjct: 75 GGEPLLREDLFHIARLLKERGIRTYLSTNG 104
>gi|225389655|ref|ZP_03759379.1| hypothetical protein CLOSTASPAR_03403 [Clostridium asparagiforme
DSM 15981]
gi|225044290|gb|EEG54536.1| hypothetical protein CLOSTASPAR_03403 [Clostridium asparagiforme
DSM 15981]
Length = 335
Score = 38.0 bits (87), Expect = 0.85, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK-EGRYCVLTGGEPLLQV 99
DR + +CR+C G + + I + R+ +TGGEPL++
Sbjct: 18 DRCNLRCRYC-----MPDGVEWLPMEDILSYEEIGRVCRAAARLGIRHLKITGGEPLVRK 72
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
P + K G E + + TNG
Sbjct: 73 GCPELIGSLKNIPGIEAVTITTNG 96
>gi|83592252|ref|YP_426004.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum
ATCC 11170]
gi|83575166|gb|ABC21717.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum
ATCC 11170]
Length = 306
Score = 38.0 bits (87), Expect = 0.85, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 49/159 (30%), Gaps = 51/159 (32%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRFC-------- 50
++ G G VF GC L + S + C C
Sbjct: 18 YSIHDGPGIRT---IVF--LKGCPLACRWCSNPESQRFDAVLMYKKSSCVGCGKCIEVCK 72
Query: 51 --------------D----------TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
D G KG V Q+ +++ I + G
Sbjct: 73 AGALSFSNPEFIDRDKCVRCGACANVCLPGALTMKGKGMTVWQVMQELQKDAINYRRSGG 132
Query: 87 YCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIE 123
L+GGEPL+Q + L++A +G+ A+ET G
Sbjct: 133 GITLSGGEPLVQSAFALELLKACKDKGWSTAMETTGHAP 171
>gi|331671498|ref|ZP_08372296.1| putative activating enzyme [Escherichia coli TA280]
gi|331071343|gb|EGI42700.1| putative activating enzyme [Escherichia coli TA280]
Length = 287
Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L + L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVMALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|240103873|ref|YP_002960182.1| Radical SAM protein, MoaA/nifB/pqqE family [Thermococcus
gammatolerans EJ3]
gi|239911427|gb|ACS34318.1| Radical SAM protein, MoaA/nifB/pqqE family [Thermococcus
gammatolerans EJ3]
Length = 590
Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
NL + +R + C +C F +G ++Q+ ++ TG
Sbjct: 139 NLLNIVLTNRCNLSCWYC--FFYAREGQPIYEPTLEQIRMMLRNAKKEYPIGANAVQFTG 196
Query: 93 GEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
GEP L+ D+ +I+ + G+ + + T+G
Sbjct: 197 GEPTLRDDLIEIIKIAKEEGYDHVQLNTDG 226
>gi|167570715|ref|ZP_02363589.1| molybdenum cofactor biosynthesis protein A [Burkholderia
oklahomensis C6786]
Length = 363
Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 38 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 97
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG+ G+ + VS A D K
Sbjct: 98 NIEFLIERLARMTTVAGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVSLDALDDALFKR 157
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 158 MNDADFASADV 168
>gi|167563554|ref|ZP_02356470.1| molybdenum cofactor biosynthesis protein A [Burkholderia
oklahomensis EO147]
Length = 370
Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG+ G+ + VS A D K
Sbjct: 105 NIEFLIERLARMTTVAGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVSLDALDDALFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|116751423|ref|YP_848110.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116700487|gb|ABK19675.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 362
Score = 38.0 bits (87), Expect = 0.86, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 16/102 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVL 90
CNL C ++G + A I + E Y +L
Sbjct: 39 CNLNC--------IHC------YLGPHDGDHETLGPEAGAARIRDLLRQAAEAGCLYVLL 84
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
+GGEPLL+ D + + G + V TN + + I+
Sbjct: 85 SGGEPLLRPDFESIYRYARSLGLIVTVFTNACLIDARHIEIF 126
>gi|331681363|ref|ZP_08382000.1| putative activating enzyme [Escherichia coli H299]
gi|331081584|gb|EGI52745.1| putative activating enzyme [Escherichia coli H299]
Length = 287
Score = 38.0 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVNGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ I + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHIRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|294789009|ref|ZP_06754249.1| molybdenum cofactor biosynthesis protein A [Simonsiella muelleri
ATCC 29453]
gi|294483111|gb|EFG30798.1| molybdenum cofactor biosynthesis protein A [Simonsiella muelleri
ATCC 29453]
Length = 324
Score = 38.0 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 22/170 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D + +C +C K + ++ L+ + + R LTGGEP L+ D
Sbjct: 20 DLCNYRCNYC-LPNGYQGKAKPDELTLPEIETLVA---VFAQNGTRKIRLTGGEPTLRAD 75
Query: 101 VPLIQALNKRG---FEIAVETNG-------TIEPPQGIDWICVSPKAGCD---LKIKGGQ 147
+P I A + IA+ TN G+D + VS + KI G
Sbjct: 76 LPDIIAACRANPEIQHIALTTNAFKLGKLFPQYRVAGLDKLNVSIDSFQPETFHKITGKN 135
Query: 148 ELKLVFPQVNVSPEN-YIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
E + + + + L +E+ AI + P
Sbjct: 136 ECHHILNDLEQILADGFNNIKINTLLL----KEHIEQTLPDAIEFVKTRP 181
>gi|182701574|ref|ZP_02613151.2| radical SAM domain protein [Clostridium botulinum NCTC 2916]
gi|182670554|gb|EDT82528.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
Length = 297
Score = 38.0 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + + ++ ++ D I +Q
Sbjct: 20 CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQI--KPYTDYIYFHV 60
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GEPLL D+ + K+GF++ + TNGT+ I
Sbjct: 61 KGEPLLHPDIDKFLDLSYKKGFKVNITTNGTLINKAKDKII 101
>gi|153941209|ref|YP_001390424.1| radical SAM domain-containing protein [Clostridium botulinum F str.
Langeland]
gi|170755989|ref|YP_001780700.1| radical SAM domain-containing protein [Clostridium botulinum B1
str. Okra]
gi|152937105|gb|ABS42603.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
gi|169121201|gb|ACA45037.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
Length = 297
Score = 38.0 bits (87), Expect = 0.87, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 45/162 (27%), Gaps = 30/162 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + + ++ ++ D I +Q
Sbjct: 20 CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQI--KPYTDYIYFHV 60
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GEPLL D+ + K+GF++ + TNGT+ I K
Sbjct: 61 KGEPLLHPDIDKFLDLSYKKGFKVNITTNGTLINKAKDKII---MKKALRQVNFSLHSFD 117
Query: 151 LVFPQVNVSPENYIGFDF-------ERFSLQPMDGPFLEENT 185
N F + E+NT
Sbjct: 118 GNENSKNKDKYINDILSFVRDTIENNNIFISLRLWNLDEDNT 159
>gi|281411545|ref|YP_003345624.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
gi|281372648|gb|ADA66210.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
Length = 323
Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D 100
R + +C+ C + + +++ +LI + G + GGEPLL
Sbjct: 15 RCNFRCKHC---YCKAGKPHPEELSFEEIKELILDMKELGTWA---LDIIGGEPLLHPQI 68
Query: 101 VPLIQALNKRGFEIAVETNG 120
+ ++ + G + + TNG
Sbjct: 69 LDILAFGKEVGQRLMINTNG 88
>gi|16132196|ref|NP_418796.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli str. K-12 substr. MG1655]
gi|89111087|ref|AP_004867.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli str. K-12 substr. W3110]
gi|170083765|ref|YP_001733085.1| pyruvate formate lyase activating enzyme [Escherichia coli str.
K-12 substr. DH10B]
gi|218561610|ref|YP_002394523.1| pyruvate formate lyase activating enzyme [Escherichia coli S88]
gi|238903466|ref|YP_002929262.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
BW2952]
gi|253774991|ref|YP_003037822.1| radical SAM protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254164305|ref|YP_003047415.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
B str. REL606]
gi|732121|sp|P39409|YJJW_ECOLI RecName: Full=Uncharacterized protein yjjW
gi|537219|gb|AAA97275.1| ORF_f287 [Escherichia coli str. K-12 substr. MG1655]
gi|1790839|gb|AAC77332.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli str. K-12 substr. MG1655]
gi|85677118|dbj|BAE78368.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli str. K12 substr. W3110]
gi|169891600|gb|ACB05307.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli str. K-12 substr. DH10B]
gi|218368379|emb|CAR06199.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
S88]
gi|238863062|gb|ACR65060.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli BW2952]
gi|242379901|emb|CAQ34738.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli BL21(DE3)]
gi|253326035|gb|ACT30637.1| Radical SAM domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253976208|gb|ACT41879.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli B str. REL606]
gi|253980365|gb|ACT46035.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli BL21(DE3)]
gi|260450810|gb|ACX41232.1| Radical SAM domain protein [Escherichia coli DH1]
gi|315138932|dbj|BAJ46091.1| predicted pyruvate formate lyase activating enzyme [Escherichia
coli DH1]
Length = 287
Score = 38.0 bits (87), Expect = 0.88, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSIYLLAER 204
>gi|261402249|ref|YP_003246473.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
vulcanius M7]
gi|261369242|gb|ACX71991.1| molybdenum cofactor biosynthesis protein A [Methanocaldococcus
vulcanius M7]
Length = 301
Score = 38.0 bits (87), Expect = 0.89, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 26/172 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G +++ ++ + + + ++
Sbjct: 20 CNLK-----------CFYCH--QEGHLSNNNRSMTAEEIGKIV---RTSTKFGVKKVKIS 63
Query: 92 GGEPLLQVD-VPLIQALNKRGFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPLL+ D +I+ + + I++ TNG G+D + VS
Sbjct: 64 GGEPLLRKDVCDIIKNIKDERIKDISLTTNGILLENLAENLKNSGLDRVNVSLDTLNPFL 123
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K V +V + + D + + + + +C
Sbjct: 124 YKKITRFGDV-NRVISGIKKAVDVDLTPIKINFLATSINISDLKNIMEFCKD 174
>gi|240850801|ref|YP_002972201.1| hypothetical protein Bgr_12880 [Bartonella grahamii as4aup]
gi|240267924|gb|ACS51512.1| hypothetical protein Bgr_12880 [Bartonella grahamii as4aup]
Length = 352
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 17/121 (14%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQ 105
C CD + + + + L L + EK +L+GGEPL+ ++
Sbjct: 48 CIMCD----CWKIKEKNWHTPESLIPL---FRMLKEKGAASVMLSGGEPLMHPKLKDILL 100
Query: 106 ALNKRGFEIAVETNG---------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
LN+ G + + TNG + + I S I+G + V+ +
Sbjct: 101 TLNELGLPVELNTNGILLHKNLWISQYDIKEIVISMDSTSVQGYYDIRGANKFDRVWKNI 160
Query: 157 N 157
Sbjct: 161 E 161
>gi|269119014|ref|YP_003307191.1| radical SAM protein [Sebaldella termitidis ATCC 33386]
gi|268612892|gb|ACZ07260.1| Radical SAM domain protein [Sebaldella termitidis ATCC 33386]
Length = 368
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 27/159 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL A CR + G + L ++++ + +
Sbjct: 15 CNLRCKYCFYFDVAACR---------ETKSYGIMKTELLEIIVKKTLSEADGYCSF-AFQ 64
Query: 92 GGEPLLQVDVPLIQAL--------NKRGFEIAVETNGTIEPPQGIDW---------ICVS 134
GGEP L + + +++TNG + + + I +
Sbjct: 65 GGEPTLAGLDFYKKLIEFQKKYNYKNLNIYNSIQTNGYLLNEEWAAFFAKNNFLVGISLD 124
Query: 135 PKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ E K F ++ + E + ++ E L
Sbjct: 125 GNKNTHDFHRINTENKGSFTEIMKNIEIFNNYNVEYNIL 163
>gi|212224671|ref|YP_002307907.1| hypothetical protein TON_1520 [Thermococcus onnurineus NA1]
gi|212009628|gb|ACJ17010.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
Length = 590
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G +R + C +C F +G ++Q+ ++
Sbjct: 123 CPFDCGLCARHRSHTSLLNIVLTNRCNLSCWYC--FFYAKEGQPIYEPTLEQIRMMLRNA 180
Query: 78 WITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGF-EIAVETNG 120
LTGGEP L + +I+ + G+ + + T+G
Sbjct: 181 KKEHPIGANAVQLTGGEPTLRNDLIEIIRIAKEEGYDHVQLNTDG 225
>gi|302540150|ref|ZP_07292492.1| coenzyme PQQ biosynthesis protein E [Streptomyces hygroscopicus
ATCC 53653]
gi|302457768|gb|EFL20861.1| coenzyme PQQ biosynthesis protein E [Streptomyces himastatinicus
ATCC 53653]
Length = 371
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 17/91 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GC L C +C + ++ ++ + E + L
Sbjct: 24 GCPL-----------HCPYCSNPLQLT--RRSRELTGEEWERVLRQ---AAELGVVHTHL 67
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
+GGEPLL+ D+ ++ A G + T+G
Sbjct: 68 SGGEPLLRRDLEVIVAAAASAGLYTQLVTSG 98
>gi|237653116|ref|YP_002889430.1| molybdenum cofactor biosynthesis protein A [Thauera sp. MZ1T]
gi|237624363|gb|ACR01053.1| molybdenum cofactor biosynthesis protein A [Thauera sp. MZ1T]
Length = 359
Score = 38.0 bits (87), Expect = 0.90, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V R + +++ + + R +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPREVFGDDYAFLPRRQLLSFEEILRVARLFVARGVRKIRITGGEPLLRK 104
Query: 100 DVPLIQALNKR--GFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKGGQELK 150
DV + + G E+ + TNG G+ + VS A D + +
Sbjct: 105 DVDRLIGMLAALDGVEVTLTTNGVLLPKLARRLKDAGLHRVTVSLDALDDALFRRMNDAD 164
Query: 151 LVFPQV 156
+V
Sbjct: 165 YPVEKV 170
>gi|134094881|ref|YP_001099956.1| radical SAM domain-containing protein [Herminiimonas
arsenicoxydans]
gi|133738784|emb|CAL61831.1| anaerobic class III ribonucleotide activase NrdG [Herminiimonas
arsenicoxydans]
Length = 251
Score = 38.0 bits (87), Expect = 0.91, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 24/134 (17%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF GC +C +C + ++ +
Sbjct: 41 AVVFV--QGCP-----------WRCDYCHNPHLQLRTVDSPLEWP-----KVMALLRRRI 82
Query: 83 KEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-----PQGIDWICVSPK 136
+ +GGE + I + GF + + + G +DW+ + K
Sbjct: 83 GLIDAVIFSGGEATIDPALQAAILEVRALGFRVGLHSAGIYPKRLAEILPVLDWVGLDIK 142
Query: 137 AGCDLKIKGGQELK 150
A D + +
Sbjct: 143 APFDSYERITRIAD 156
>gi|15607116|ref|NP_214498.1| molybdenum cofactor biosynthesis protein A [Aquifex aeolicus VF5]
gi|7674126|sp|O67929|MOAA_AQUAE RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|2984358|gb|AAC07877.1| molybdenum cofactor biosynthesis protein A [Aquifex aeolicus VF5]
Length = 320
Score = 38.0 bits (87), Expect = 0.91, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQ-WITGEKEGRYCVLTGGEPLL 97
DR + +C FC G + QL + IEE I + LTGGEPLL
Sbjct: 19 DRCNLRCNFC-----MPPGKEYNFLPKRQLLTPEEIEEYVKIFAKLGVEKVRLTGGEPLL 73
Query: 98 QVDVP--LIQALNKRGFE-IAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKG 145
+ D+ + + G + IA+ TNG G+ I VS + K +
Sbjct: 74 REDLEEIIQRISKVEGIKDIALTTNGVFLKERLKALKEAGLKRITVSVHSLNPEKNQK 131
>gi|317497375|ref|ZP_07955698.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316895444|gb|EFV17603.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 304
Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 2/106 (1%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
G + ++ D + Q + ++GGEPL + L++ K A+ET
Sbjct: 107 GKPMEISEIIDQVLRQELFYHHGEGGLTVSGGEPLSHGDWLIRLLKEAKKHRLHTAIETC 166
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
G + I D+K ++ K + N +
Sbjct: 167 GYASYEVLKEVINYLDVIFFDIKSMNDEKHKRYTGKSNQIILDNFK 212
>gi|315222504|ref|ZP_07864393.1| glycyl-radical enzyme activating family protein [Streptococcus
anginosus F0211]
gi|315188190|gb|EFU21916.1| glycyl-radical enzyme activating family protein [Streptococcus
anginosus F0211]
Length = 258
Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK-- 61
IF ++ G G VF GC L +C +C +
Sbjct: 8 IFNIQHFSIHDGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKFKPEPM 51
Query: 62 -----------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALN 108
G +V+++ + + E+ G L+GGE Q + +++A
Sbjct: 52 LDASSKKTITMGEEKSVEEIIKEVLKDREFYEESGGGLTLSGGEIFAQFEFAKAILKAAK 111
Query: 109 KRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
++G A+ET ++ + +D + DLK + V N I + F
Sbjct: 112 EKGIHTAIETTAFVDHNKFVDLLQYVDFIYTDLKHYNTINHRKVTGVKNELIIKNIHYAF 171
Query: 169 ER 170
+
Sbjct: 172 SQ 173
>gi|303234148|ref|ZP_07320794.1| radical SAM domain protein [Finegoldia magna BVS033A4]
gi|302494689|gb|EFL54449.1| radical SAM domain protein [Finegoldia magna BVS033A4]
Length = 423
Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL ++ CDT+ + I+ + + + I + T
Sbjct: 72 CNLRCSYCYEKNI-----CDTERLMIEEEN------NSIYEFIYRNIKKSDARIFNIEFT 120
Query: 92 GGEPLLQV------DVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
GGEPLL + + L ++ + ++ TNG + + I +
Sbjct: 121 GGEPLLNKKYIFRLVNKINRNLKEKIIKYSLVTNGILLEKEDIKFFN 167
>gi|264677776|ref|YP_003277682.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
CNB-2]
gi|262208288|gb|ACY32386.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
CNB-2]
Length = 342
Score = 38.0 bits (87), Expect = 0.92, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + I + R LTGGEPLL+
Sbjct: 10 DRCNFRCNYCMPKEVFDKNYQYLPHSSLLSFEEITRLARLFVAHGVRKLRLTGGEPLLRK 69
Query: 100 DVPLIQALNKR-------GFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + A ++ + TN + G++ + VS D +
Sbjct: 70 NIEALIAQLAELRTPDGQPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDDAVFRR 129
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ V E
Sbjct: 130 MNDVDFPVTDVLAGIEAAQTAGLSHI 155
>gi|221067914|ref|ZP_03544019.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
KF-1]
gi|220712937|gb|EED68305.1| molybdenum cofactor biosynthesis protein A [Comamonas testosteroni
KF-1]
Length = 380
Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + I + R LTGGEPLL+
Sbjct: 48 DRCNFRCNYCMPKEVFDKNYQYLPHSSLLSFEEITRLARLFVAHGVRKLRLTGGEPLLRK 107
Query: 100 DVPLIQALNKR-------GFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + A ++ + TN + G++ + VS D +
Sbjct: 108 NIEALIAQLAELRTPDGLPLDLTLTTNASLLARKARALKEAGLNRVTVSLDGLDDAVFRR 167
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ V E
Sbjct: 168 MNDVDFPVTDVLAGIEAAQATGLSHI 193
>gi|218703128|ref|YP_002410757.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
IAI39]
gi|218373114|emb|CAR21006.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
IAI39]
Length = 287
Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCLHQALQIVDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|194291439|ref|YP_002007346.1| pyrroloquinoline quinone biosynthesis protein pqqe [Cupriavidus
taiwanensis LMG 19424]
gi|193225343|emb|CAQ71287.1| Quinoprotein ethanol dehydrogenase; PQQ dehydrogenase family
[Cupriavidus taiwanensis LMG 19424]
Length = 391
Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC D+ + Q D+ + G +
Sbjct: 17 PLWLLAELTYRCPLHCAFCSNPVDYARH----AEELDTAQWCDVFTQARALGAVQ---LG 69
Query: 90 LTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
L+GGEPLL+ D+ ++ GF + T+G
Sbjct: 70 LSGGEPLLRKDLETLVRHARGLGFYTNLITSG 101
>gi|225849867|ref|YP_002730101.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1]
gi|225645943|gb|ACO04129.1| heme d1 biosynthesis protein NirJ [Persephonella marina EX-H1]
Length = 362
Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL+ C+ C + ++ G ++D++ I E + +L+
Sbjct: 33 CNLF-----------CQHC---YSAANLSRAGEPSIDEIRSQI---PYLKEAGVKVLILS 75
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPL++ D+ + + GF + + TNG
Sbjct: 76 GGEPLIREDIFDIANLFKENGFNVTLSTNG 105
>gi|172060044|ref|YP_001807696.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MC40-6]
gi|171992561|gb|ACB63480.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MC40-6]
Length = 370
Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRDVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|115351039|ref|YP_772878.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
AMMD]
gi|115281027|gb|ABI86544.1| GTP cyclohydrolase subunit MoaA [Burkholderia ambifaria AMMD]
Length = 370
Score = 38.0 bits (87), Expect = 0.93, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRDVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|331661011|ref|ZP_08361943.1| putative activating enzyme [Escherichia coli TA206]
gi|222036121|emb|CAP78866.1| Uncharacterized protein yjjW [Escherichia coli LF82]
gi|312949008|gb|ADR29835.1| putative pyruvate formate lyase activating enzyme [Escherichia coli
O83:H1 str. NRG 857C]
gi|331052053|gb|EGI24092.1| putative activating enzyme [Escherichia coli TA206]
Length = 287
Score = 38.0 bits (87), Expect = 0.94, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|218777947|ref|YP_002429265.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
gi|218759331|gb|ACL01797.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
Length = 292
Score = 38.0 bits (87), Expect = 0.94, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
L+ L+ QC+ C G + + + +I+ + L G
Sbjct: 4 PLFGATAMISLTYQCQ-CQCPHCGSRTNQQKNRPELSKSQIIDLIKQCSKAGTANLYLFG 62
Query: 93 GEPLLQV-DVPLIQALNKRGFEIAVETNGT 121
GEPLL ++ G ++++TNG
Sbjct: 63 GEPLLHPNLDDFVRTAKGLGMRVSMDTNGY 92
>gi|227828005|ref|YP_002829785.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
M.14.25]
gi|229585274|ref|YP_002843776.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
M.16.27]
gi|238620233|ref|YP_002915059.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
M.16.4]
gi|259495867|sp|C3MZ99|MOAA_SULIA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|259495868|sp|C4KIH7|MOAA_SULIK RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|259495870|sp|C3MXF3|MOAA_SULIM RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|227459801|gb|ACP38487.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
M.14.25]
gi|228020324|gb|ACP55731.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
M.16.27]
gi|238381303|gb|ACR42391.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
M.16.4]
Length = 308
Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDV 101
+ +C FC ++G +G Y + D++ + LTGGEP L + V
Sbjct: 20 CNFECFFCH-----MEGEEGDNY-ILSKEDILLVAKVAKNFGINSVKLTGGEPTLRRDLV 73
Query: 102 PLIQALNKRGFE-IAVETNGT 121
+++ L + G+ +++ TNG
Sbjct: 74 EIVRGLKQLGYRDVSMTTNGF 94
>gi|254281851|ref|ZP_04956819.1| putative oxygen-independent coproporphyrinogen III oxidase [gamma
proteobacterium NOR51-B]
gi|219678054|gb|EED34403.1| putative oxygen-independent coproporphyrinogen III oxidase [gamma
proteobacterium NOR51-B]
Length = 383
Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 33 NLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
L +C +CD G + Y LAD+ ++ + +
Sbjct: 9 PLALYVHIPWCERKCPYCDFNSHEGFKPDLEPVYVAALLADIEAQEQWIDSRPIASIFIG 68
Query: 92 GGEPLLQVDVPLIQAL--------NKRGFEIAVETN 119
GG P L + + L G EI +ETN
Sbjct: 69 GGTPSLFSADAIGKLLDGVARVAHLPAGTEITLETN 104
>gi|149926429|ref|ZP_01914690.1| molybdenum cofactor biosynthesis protein A [Limnobacter sp. MED105]
gi|149824792|gb|EDM84006.1| molybdenum cofactor biosynthesis protein A [Limnobacter sp. MED105]
Length = 372
Score = 38.0 bits (87), Expect = 0.95, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
DR + +C +C D D+ + + +++ + E G ++ R LTGGE
Sbjct: 47 DRCNFRCVYCMPKSIFDKDYQFLPHKD--LLSFEEIERVAREFVALGVEKIR---LTGGE 101
Query: 95 PLLQVDVPLIQALNKR-------GFEIAVETNGT-------IEPPQGIDWICVSPKAGCD 140
PLL+ ++ ++ R EI + TNGT G++ + VS A D
Sbjct: 102 PLLRKNIEILIEQLARLRTPSGKPVEITLTTNGTLLRKKSRTLKEAGLNRVTVSLDAIDD 161
Query: 141 LKIKGGQELKLVFPQV 156
K ++ +V
Sbjct: 162 AVFKAMNDVDFSVDEV 177
>gi|220928570|ref|YP_002505479.1| radical SAM protein [Clostridium cellulolyticum H10]
gi|219998898|gb|ACL75499.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
Length = 362
Score = 38.0 bits (87), Expect = 0.96, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R C + + + ++ E G + +L
Sbjct: 71 CNLRCSGCYARELHSCS---------DEVRDSQMTCQRWNEIFREAESLG---ISFILLA 118
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPL++ DV +++A + + + TNG
Sbjct: 119 GGEPLMRRDV-VVKAADSKNIIFPIFTNG 146
>gi|323475095|gb|ADX85701.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
REY15A]
gi|323477827|gb|ADX83065.1| molybdenum cofactor biosynthesis protein A [Sulfolobus islandicus
HVE10/4]
Length = 308
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDV 101
+ +C FC ++G +G Y + D++ + LTGGEP L + V
Sbjct: 20 CNFECFFCH-----MEGEEGDNY-ILSKEDILLVAKVAKNFGINSVKLTGGEPTLRRDLV 73
Query: 102 PLIQALNKRGFE-IAVETNGT 121
+++ L + G+ +++ TNG
Sbjct: 74 EIVRGLKQLGYRDVSMTTNGF 94
>gi|228924885|ref|ZP_04088040.1| Pyruvate formate-lyase activating enzyme-like protein [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228834803|gb|EEM80287.1| Pyruvate formate-lyase activating enzyme-like protein [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 485
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 16/161 (9%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLI 104
C +C + +L+ E E+ T +P++ +
Sbjct: 100 CDYCHNWQTSQAKYVKDKDVQYYTPELVVE--TALERGIPIISWTYNDPVVWHEFILDTG 157
Query: 105 QALNKRG--------FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV 156
+ + G F I++E G E + ID VS K D K + P +
Sbjct: 158 RIAKEHGLTNLYKSAFFISLE--GARELCEVIDIFSVSLK-SMDEKWYRKISKGWLPPVL 214
Query: 157 NVSPENYIGFDFERF-SLQPMDGPFLEENTNLAISYCFQNP 196
+ + SL D +E+T + N
Sbjct: 215 EATKFVFDQGKHVEISSLLVTDQNDNDESTKRLADWVLNNL 255
>gi|229157174|ref|ZP_04285254.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 4342]
gi|228626238|gb|EEK82985.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 4342]
Length = 147
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G ++++ +
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGIEMTLEEIVE 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P LQ
Sbjct: 52 EI------ASNPLTDVTFSGGDPFLQ 71
>gi|266624938|ref|ZP_06117873.1| putative pyruvate formate-lyase activating enzyme [Clostridium
hathewayi DSM 13479]
gi|288863176|gb|EFC95474.1| putative pyruvate formate-lyase activating enzyme [Clostridium
hathewayi DSM 13479]
Length = 279
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 46/138 (33%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFV-----------GIQ 58
F G G VF GC S +C +C G +
Sbjct: 15 FH--DGPGIRT---TVF--LKGC-----------SIRCPWCSNPENLEPAIQRYIKDGNE 56
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT---------------GGEPLLQV--DV 101
G G Y+ +L + + +T GGE LLQ+
Sbjct: 57 GLYGRWYSSAELYQEVIRDKEFYIGDITEYKITDPMMLDKLPGGVTFSGGECLLQMSELE 116
Query: 102 PLIQALNKRGFEIAVETN 119
+++ L+ I +ET+
Sbjct: 117 DVLRRLHSEKIHITIETS 134
>gi|167581126|ref|ZP_02374000.1| molybdenum cofactor biosynthesis protein A [Burkholderia
thailandensis TXDOH]
Length = 370
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG+ G+ + VS A D K
Sbjct: 105 NIEFLIERLAKMTTVDGRALDITLTTNGSLLVRKAKSLRDAGLSRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|94991327|ref|YP_599427.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10270]
gi|94544835|gb|ABF34883.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
MGAS10270]
Length = 226
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 15/140 (10%)
Query: 45 AQCRFCDTDFVGIQGTK-------------GGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
+C +C + + G VD++ + + + E+ G L+
Sbjct: 1 MRCPWCANPESQQKAPEQMLTSDGLNTKIVGEEKTVDEVIEEVLKDLDFYEESGGGMTLS 60
Query: 92 GGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
GGE Q D + L++A G A+ET + Q + I DLK
Sbjct: 61 GGEIFAQFDFALALLKAAKAAGLHTAIETTAFAKHEQFVTLIDYVDFIYTDLKHYNQLRH 120
Query: 150 KLVFPQVNVSPENYIGFDFE 169
+ V N I + F+
Sbjct: 121 QKVTGVRNDLIIKNIHYAFQ 140
>gi|83721219|ref|YP_442241.1| molybdenum cofactor biosynthesis protein A [Burkholderia
thailandensis E264]
gi|167619209|ref|ZP_02387840.1| molybdenum cofactor biosynthesis protein A [Burkholderia
thailandensis Bt4]
gi|257138434|ref|ZP_05586696.1| molybdenum cofactor biosynthesis protein A [Burkholderia
thailandensis E264]
gi|83655044|gb|ABC39107.1| molybdenum cofactor biosynthesis protein A [Burkholderia
thailandensis E264]
Length = 370
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG+ G+ + VS A D K
Sbjct: 105 NIEFLIERLAKMTTVDGRALDITLTTNGSLLVRKAKSLRDAGLSRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|24115609|ref|NP_710119.1| putative activating enzyme [Shigella flexneri 2a str. 301]
gi|30065617|ref|NP_839788.1| putative activating enzyme [Shigella flexneri 2a str. 2457T]
gi|110808168|ref|YP_691688.1| putative activating enzyme [Shigella flexneri 5 str. 8401]
gi|24054946|gb|AAN45826.1| putative activating enzyme [Shigella flexneri 2a str. 301]
gi|30043881|gb|AAP19600.1| putative activating enzyme [Shigella flexneri 2a str. 2457T]
gi|110617716|gb|ABF06383.1| putative activating enzyme [Shigella flexneri 5 str. 8401]
gi|281603716|gb|ADA76700.1| putative Pyruvate-formate lyase-activating enzyme [Shigella
flexneri 2002017]
gi|313646265|gb|EFS10727.1| radical SAM superfamily protein [Shigella flexneri 2a str. 2457T]
Length = 287
Score = 38.0 bits (87), Expect = 0.97, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSIYLLAER 204
>gi|284924558|emb|CBG37697.1| radical SAM superfamily protein [Escherichia coli 042]
gi|323960094|gb|EGB55739.1| radical SAM superfamily protein [Escherichia coli H489]
Length = 287
Score = 38.0 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 47 -------CRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
C CDT +VD++ + + + E ++GGE
Sbjct: 69 VVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ R V++NG + + V A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSIYLLAER 204
>gi|218887987|ref|YP_002437308.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758941|gb|ACL09840.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 393
Score = 38.0 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + I + +Q +I++ + +
Sbjct: 50 CNLKCVHCYAQA-------------IDPEGKDEISTEQGKAIIDDL---AAYGAPVMLFS 93
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
GGEPL+ Q V L + +G + TNG
Sbjct: 94 GGEPLVRQDLVELAKHATTKGMRAVISTNG 123
>gi|187778214|ref|ZP_02994687.1| hypothetical protein CLOSPO_01806 [Clostridium sporogenes ATCC
15579]
gi|187775142|gb|EDU38944.1| hypothetical protein CLOSPO_01806 [Clostridium sporogenes ATCC
15579]
Length = 312
Score = 38.0 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + + ++ ++ D I +Q
Sbjct: 35 CNL-----------ACDFC------PETKRKAQFMSIEIFDKILDQI--KPYTDYIYFHV 75
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GEPLL D+ + K+GF++ + TNGT+ I
Sbjct: 76 KGEPLLHPDIDKFLDLSYKKGFKVNITTNGTLINKAKDKII 116
>gi|114566232|ref|YP_753386.1| radical SAM domain-containing protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337167|gb|ABI68015.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 333
Score = 38.0 bits (87), Expect = 0.98, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV-PLIQAL 107
FCD + + +Q LIEE G R + +GGEPL++ D+ L Q
Sbjct: 14 FCDHCYRDAGARLEDELSTEQAKKLIEEIKKAGF---RIMIFSGGEPLMRPDIFELGQYA 70
Query: 108 NKRGFEIAVETNGTIEPPQ 126
++G + + TNG++ P+
Sbjct: 71 TRQGLRVVMGTNGSLISPE 89
>gi|237727284|ref|ZP_04557765.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434140|gb|EEO44217.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 368
Score = 37.6 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 50 CDTDFVGIQ----GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
CD F+ + GG + Q D E+ + + +LTGGEP+L L
Sbjct: 39 CDMCFIHTERNVVERHGGLLPLQQWLDWAEQLQ---DMGTLFILLTGGEPMLYPHFKELY 95
Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWI 131
L + GF + + TNGT+ + + +
Sbjct: 96 TRLREMGFILTLNTNGTLIDNEMVRIL 122
>gi|168244537|ref|ZP_02669469.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168464516|ref|ZP_02698419.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|194448855|ref|YP_002048585.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194407159|gb|ACF67378.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|195632688|gb|EDX51142.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|205336611|gb|EDZ23375.1| pyruvate formate lyase activating enzyme [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
Length = 287
Score = 37.6 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSVDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSVDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTAIKADPQLQRLTCLVDSNGQLSETGWKKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F +
Sbjct: 188 GRDNTHIKHSIRFLAAQ 204
>gi|32266519|ref|NP_860551.1| molybdenum cofactor biosynthesis protein A [Helicobacter hepaticus
ATCC 51449]
gi|32262570|gb|AAP77617.1| molybdenum cofactor biosynthesis protein A [Helicobacter hepaticus
ATCC 51449]
Length = 332
Score = 37.6 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 43 LSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
+ +C++C DT + + L ++E + + + +TGGEPLL+ D
Sbjct: 21 CNFRCQYCMPDTPESFVDE------SALPLPKMLEFIKLAIDNGIKKIRITGGEPLLRAD 74
Query: 101 VPLIQALNKRGFEIAVE 117
+ A + +E
Sbjct: 75 LSAFIAQIYE-YAPHIE 90
>gi|302872841|ref|YP_003841477.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
gi|302575700|gb|ADL43491.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
Length = 194
Score = 37.6 bits (86), Expect = 1.00, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 28/98 (28%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y + TL G G G GC S +C+ C + + K
Sbjct: 11 YPV----YTL-GPGKRVG-----IWLQGC-----------SIRCKGCMSVHTW-EFDKSK 48
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
++++AD+++ + ++GGEP Q +
Sbjct: 49 AIKIEEVADILK------SFGCKRLTISGGEPFDQNEA 80
>gi|218551681|ref|YP_002385473.1| pyruvate formate lyase activating enzyme [Escherichia fergusonii
ATCC 35469]
gi|218359223|emb|CAQ91889.1| putative pyruvate formate lyase activating enzyme [Escherichia
fergusonii ATCC 35469]
Length = 287
Score = 37.6 bits (86), Expect = 1.00, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 66/236 (27%), Gaps = 52/236 (22%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVNSK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + D + ++GGE L
Sbjct: 69 VVWNAAVCEQCDTCLK-MCPQHATPMAQSMNVDEVLSHVRKAVLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + ++NG + + V A DLK G + + +
Sbjct: 128 PFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLT 187
Query: 154 PQVNVSPENYIGFDFE-------RFSLQPMDGPFLEENTNLAISYCFQ--NPKWRL 200
+ N + I E R + P +L+ LA + Q + RL
Sbjct: 188 GRDNQQIKRSISLLAERGKLAELRLLVIPGHVDYLQHIDELA-EFIRQLGDVPVRL 242
>gi|186475582|ref|YP_001857052.1| molybdenum cofactor biosynthesis protein A [Burkholderia phymatum
STM815]
gi|184192041|gb|ACC70006.1| molybdenum cofactor biosynthesis protein A [Burkholderia phymatum
STM815]
Length = 370
Score = 37.6 bits (86), Expect = 1.00, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE I LTGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFGKDYPFLPHSALLTFEEIERLAAIFVAHGVEKIRLTGGEPLLRK 104
Query: 100 DVPLIQALNKR-------GFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G++ + VS A D +
Sbjct: 105 NLEFLIERLARMTTAAGKPLDLTLTTNGSLLARKARSLKDAGLNRVTVSLDALDDALFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFAVSDV 175
>gi|237748413|ref|ZP_04578893.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes
OXCC13]
gi|229379775|gb|EEO29866.1| molybdenum cofactor biosynthesis protein A [Oxalobacter formigenes
OXCC13]
Length = 372
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 15/126 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + I + + LTGGEPLL+
Sbjct: 50 DRCNFRCVYCMPKQVFGKDFRFIPHSDMLSFEEIARLARLFVARGVEKIRLTGGEPLLRK 109
Query: 100 DVPLIQALNK-------RGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKG 145
+V + R ++ + TNG++ G+ I VS A D +
Sbjct: 110 NVERLIEQLSRLKTPEGRPIDLTLTTNGSMLAKKAQTLFDAGLKRITVSLDALDDTVFRQ 169
Query: 146 GQELKL 151
++
Sbjct: 170 MNDVDF 175
>gi|167586605|ref|ZP_02378993.1| molybdenum cofactor biosynthesis protein A [Burkholderia ubonensis
Bu]
Length = 370
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHSALLTLEEIERIARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLKRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|303244016|ref|ZP_07330355.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
gi|302485668|gb|EFL48593.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
Length = 339
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 50/183 (27%), Gaps = 24/183 (13%)
Query: 23 VAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+VF GCN C+ C + YN D++E
Sbjct: 76 SSVFSIATGGCNFR-----------CKHCQNWQISQFPPDEIPYNELYPKDIVE---TAL 121
Query: 82 EKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDW----ICVSP 135
+ T EP + + G + TNG IE + +
Sbjct: 122 RYKCDGIAYTYTEPTIFYELMYDTANIARENGLYNVMITNGYIEEEPLKHLKIDAMNIDI 181
Query: 136 KAGCDLKIKGG-QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K + +L+ V V+ + I + + P +E+ N I +
Sbjct: 182 KGNEKFYKEICAAKLEPVLKTCIVAKKLGIHVEITNLII-PTYNDNIEDIRN-IIEFVRD 239
Query: 195 NPK 197
Sbjct: 240 KLG 242
>gi|297569660|ref|YP_003691004.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296925575|gb|ADH86385.1| Radical SAM domain protein [Desulfurivibrio alkaliphilus AHT2]
Length = 346
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL CR C ++ G + +L +E +
Sbjct: 27 LTGCNLS-----------CRHC---YINPDQHGRGPVSRHELMQWLE--LFATPNQESNL 70
Query: 89 VLTGGEP-LLQVDVPLIQALNKRGFE-IAVETNGTIEP 124
+ GGEP L V ++ + G+ I ++TNG +
Sbjct: 71 IFLGGEPTLHPDLVSGVRRARELGYRGITIDTNGYLHH 108
>gi|209521138|ref|ZP_03269865.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. H160]
gi|209498413|gb|EDZ98541.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. H160]
Length = 382
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG-EKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE LTGGEPLL+
Sbjct: 58 DRCNFRCVYCMPRAVFDKDYAFLPHSALLSFEEIERLAQLFVAHGVEKIRLTGGEPLLRK 117
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 118 NLEFLIERLARLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDDALFRR 177
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 178 MNDADFAVADV 188
>gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
alkenivorans AK-01]
gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
alkenivorans AK-01]
Length = 317
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 58/195 (29%)
Query: 9 IFLTLQ------GEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC- 50
IF ++Q G G VF GC+L + + ++C C
Sbjct: 5 IF-SIQRMSTEDGPGIRT---TVF--LKGCSLSCTWCHNPESISALPQVQWIGSRCIGCR 58
Query: 51 --------------------------------DTDFVGIQGTKGGRYNVDQLADLIEEQW 78
D G ++ LA +E+
Sbjct: 59 SCVEVCPHNALELTQEGMQIDRGLCEGCGRCADECPSTAMEMLGEDRTLEDLAAELEKDR 118
Query: 79 ITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETNGTIEPPQGIDWICVSPK 136
E G ++GGEP LQ D + +G A++T G ++P + +
Sbjct: 119 AYFESSGGGVTISGGEPALQADFAASLLRICQGKGLHTALDTCGMVKPAALESILPFANM 178
Query: 137 AGCDLKIKGGQELKL 151
D+K K
Sbjct: 179 VLFDVKFADTSLHKR 193
>gi|194334092|ref|YP_002015952.1| radical SAM domain-containing protein [Prosthecochloris aestuarii
DSM 271]
gi|194311910|gb|ACF46305.1| Radical SAM domain protein [Prosthecochloris aestuarii DSM 271]
Length = 346
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + G ++ + + + + L+
Sbjct: 17 CNLS-----------CVYC---YENACRHDGAAMSLQTAEQAV--GLVAASGKPFHIQLS 60
Query: 92 GGEPLLQVDV--PLIQALNKRGFE--IAVETNGTIEPPQGIDWIC---VSPKAGCDLKIK 144
GGEPLL D +++ + K+G ++++TNG + + I + VS D +
Sbjct: 61 GGEPLLAPDTIFAVMELIRKKGIPAFVSLQTNGVLLDREMIRSLNGYGVSIGLSLDGPPR 120
Query: 145 GGQELK 150
+EL+
Sbjct: 121 LQEELR 126
>gi|295677201|ref|YP_003605725.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
CCGE1002]
gi|295437044|gb|ADG16214.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
CCGE1002]
Length = 369
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 25/136 (18%)
Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
DR + +C +C D D+ + + + +++ L ++ G ++ R LTGGE
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYAFLPHS--ALLSFEEIERLAQQFVAHGVEKIR---LTGGE 99
Query: 95 PLLQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCD 140
PLL+ ++ + R ++ + TNG+ G+ + VS A D
Sbjct: 100 PLLRKNLEFLIDRLARLTTPAGRPLDLTLTTNGSLLARKARSLKDAGLTRVTVSLDALDD 159
Query: 141 LKIKGGQELKLVFPQV 156
+ + V
Sbjct: 160 ALFRRMNDADFAVADV 175
>gi|188590775|ref|YP_001921048.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E3 str. Alaska E43]
gi|188501056|gb|ACD54192.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E3 str. Alaska E43]
Length = 310
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 50/155 (32%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRFCDT--DFVGI 57
G G VF GC L + S C C T ++ I
Sbjct: 24 DGPGIRT---IVF--LKGCPLSCHWCSNPESQNVNKQLLFNIKNCTGCHKCKTICEYDAI 78
Query: 58 QGTK---------------------------GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
G +V ++ D + + + L
Sbjct: 79 DLNNFNRIDRDKCISCGKCAENCYPGALVVSGKEMSVKEVLDELNKDSSQFRRSNGGVTL 138
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+GGEPLLQ + + +++ G +ET G ++
Sbjct: 139 SGGEPLLQHEFALEILKGCKSIGIHTTIETTGYVD 173
>gi|153955615|ref|YP_001396380.1| glycyl radical activating protein [Clostridium kluyveri DSM 555]
gi|146348473|gb|EDK35009.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM
555]
Length = 301
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVL 90
NL E+++ + C C T+ K YN +Q+ +IE+Q I G
Sbjct: 74 NLNQRLEREKCKS-CGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQRIFYRYSGGGVTF 131
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+GGE LQ + L+ L + ++A+ET+G + + D + D+K +
Sbjct: 132 SGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQFDKVKDILEKLNLIFIDIKHMDDGK 191
Query: 149 LKLV 152
K
Sbjct: 192 HKFY 195
>gi|325971981|ref|YP_004248172.1| radical SAM protein [Spirochaeta sp. Buddy]
gi|324027219|gb|ADY13978.1| Radical SAM domain protein [Spirochaeta sp. Buddy]
Length = 320
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 25/182 (13%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL Q+ + +Q + + L L E+
Sbjct: 68 FGCNLGCEFCQNYTI-------SQHEYVQSQQAETFEASDLVGLALERK------CPSIS 114
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGCDL 141
T EPL+ D + + + ++G + TNGT ID + K
Sbjct: 115 FTYSEPLVWQDYMIEVAKLAKQKGLATIMVTNGTFSEQALARISDHIDAYNIDLKGDEAF 174
Query: 142 KIK-GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK-WR 199
+ K V + ++ + +Q + L+ + + W
Sbjct: 175 YRRLCKGSAKPVLDAIEYLVAKFLHVEVTTMVMQ--GQHDKAQMLGLSDQLAKRKVQVWH 232
Query: 200 LS 201
LS
Sbjct: 233 LS 234
>gi|228916231|ref|ZP_04079801.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228928653|ref|ZP_04091689.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228934873|ref|ZP_04097704.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|229123118|ref|ZP_04252325.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus 95/8201]
gi|228660412|gb|EEL16045.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus 95/8201]
gi|228824773|gb|EEM70574.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830972|gb|EEM76573.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228843429|gb|EEM88507.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 147
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|78065694|ref|YP_368463.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. 383]
gi|77966439|gb|ABB07819.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383]
Length = 370
Score = 37.6 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHDGRPIDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ + V
Sbjct: 165 MNDAEFASADV 175
>gi|282855977|ref|ZP_06265268.1| Fe-S oxidoreductase [Pyramidobacter piscolens W5455]
gi|282586196|gb|EFB91473.1| Fe-S oxidoreductase [Pyramidobacter piscolens W5455]
Length = 542
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85
GCN+ D SA C C G R ++D++ D+I + E
Sbjct: 186 GCNVPWAILMDPTSACNLHCTGC------WAAEYGNRLNLSLDEIDDIIRQ---GKELGV 236
Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
+ TGGEPL++ D + TN
Sbjct: 237 SMYIYTGGEPLMRKDDLIRICERHPDCVFLCFTN 270
>gi|224543515|ref|ZP_03684054.1| hypothetical protein CATMIT_02724 [Catenibacterium mitsuokai DSM
15897]
gi|224523642|gb|EEF92747.1| hypothetical protein CATMIT_02724 [Catenibacterium mitsuokai DSM
15897]
Length = 439
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCN A+C +C +G R N+D + E + + E
Sbjct: 95 TTGCN-----------ARCYYC-----FEKGAVQKRMNLDTARAVAEYIFQNHDPEHLVI 138
Query: 89 VLTGGEPLLQV--DVPLIQALNKRG--FEIAVETNGT 121
GGEPLL+ +++ L+ RG F+ + TNG
Sbjct: 139 QWFGGEPLLEPKTISYIVEYLSSRGVSFDSKIITNGY 175
>gi|49478291|ref|YP_037681.1| formate acetyltransferase activating enzyme ([pyruvate
formate-lyase]-activating enzyme) (PFL activase)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118478845|ref|YP_895996.1| ribonucleoside-triphosphate reductase class III activase subunit
[Bacillus thuringiensis str. Al Hakam]
gi|165871003|ref|ZP_02215654.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus anthracis str. A0488]
gi|196034137|ref|ZP_03101547.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus W]
gi|196038534|ref|ZP_03105843.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus NVH0597-99]
gi|218904729|ref|YP_002452563.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus AH820]
gi|225865583|ref|YP_002750961.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus 03BB102]
gi|227813567|ref|YP_002813576.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus anthracis str. CDC 684]
gi|254752959|ref|ZP_05204995.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus anthracis str. Vollum]
gi|254759231|ref|ZP_05211257.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus anthracis str. Australia
94]
gi|301055088|ref|YP_003793299.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus anthracis CI]
gi|49329847|gb|AAT60493.1| formate acetyltransferase activating enzyme ([Pyruvate
formate-lyase]-activating enzyme) (PFL activase)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118418070|gb|ABK86489.1| ribonucleoside-triphosphate reductase class III activase subunit
[Bacillus thuringiensis str. Al Hakam]
gi|164713214|gb|EDR18740.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus anthracis str. A0488]
gi|195993211|gb|EDX57169.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus W]
gi|196030942|gb|EDX69540.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus NVH0597-99]
gi|218536324|gb|ACK88722.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus AH820]
gi|225787278|gb|ACO27495.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus 03BB102]
gi|227003794|gb|ACP13537.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus anthracis str. CDC 684]
gi|300377257|gb|ADK06161.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus biovar anthracis str. CI]
Length = 150
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|18312025|ref|NP_558692.1| metallo cofactor biosynthesis protein [Pyrobaculum aerophilum str.
IM2]
gi|18159450|gb|AAL62874.1| metallo cofactor biosynthesis protein [Pyrobaculum aerophilum str.
IM2]
Length = 384
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
R + +C C ++ + G N + D++++ E + TGGEPL + D
Sbjct: 45 RCNLKCVHC---YIDAGLAEPGELNTKEALDVVDQM---AEVGVPLILFTGGEPLTRPDF 98
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQ 126
+ + RG ++ + TNGT+ P+
Sbjct: 99 FEIAEYAKDRGIKLVLSTNGTLITPE 124
>gi|317154455|ref|YP_004122503.1| Radical SAM domain-containing protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316944706|gb|ADU63757.1| Radical SAM domain protein [Desulfovibrio aespoeensis Aspo-2]
Length = 339
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 29/188 (15%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN--VDQLADLIEEQWITGEKEGR 86
+GCNL C FC + +GGR DL++E
Sbjct: 79 TAGCNLS-----------CSFCQNWSLSQAPREGGRVTGRAMTPQDLVDEALKLKASS-- 125
Query: 87 YCVLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIK 144
T EP ++ + +G + TNG + + + A DLK
Sbjct: 126 -ISYTYSEPTIFFEIMQDTARLAAGQGLSNIMVTNGFMSSECLDEMGPLIDAANVDLKSF 184
Query: 145 GGQ--------ELKLVFPQVNVSPENYIGFDFERFSLQPM---DGPFLEENTNLAISYCF 193
LK V + + + L P L++ T+ I
Sbjct: 185 SDDFYQDVCGARLKPVLENLVRIRHDLGWWLEVTTLLIPGKNDSPDELDQLTDFLIRELG 244
Query: 194 QNPKWRLS 201
++ W +S
Sbjct: 245 EDTPWHIS 252
>gi|229092567|ref|ZP_04223723.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock3-42]
gi|228690854|gb|EEL44629.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock3-42]
Length = 105
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|157163946|ref|YP_001467812.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter concisus 13826]
gi|112801727|gb|EAT99071.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Campylobacter concisus 13826]
Length = 234
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
AV F+GCN+ G + + G + ++ D ++
Sbjct: 29 VAAV-IWFAGCNMRCGYCYNIEVVR--------------SNGTISFSEVCDFLDR----R 69
Query: 82 EKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFEIAVETNGTIE 123
+ V +GGE + L + + RGF + V+TNG+
Sbjct: 70 VGKLNGIVFSGGECTANPLFLRLAREVKARGFSLKVDTNGSYR 112
>gi|298479623|ref|ZP_06997823.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. D22]
gi|298274013|gb|EFI15574.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. D22]
Length = 152
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 24/110 (21%)
Query: 13 LQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ GEG F +GC S C C G G +++
Sbjct: 12 VDGEGIR------FSIYLAGC-----------SHHCPGCHNPESWNPGV-GEELTEEKIQ 53
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVET 118
+I E +GG+P + L + + G + T
Sbjct: 54 SIIREIK--ANPLLDGVTFSGGDPFFHPEAFLLLLKRVKEETGMNVWCYT 101
>gi|227829133|ref|YP_002830912.1| radical SAM protein [Sulfolobus islandicus L.S.2.15]
gi|229577935|ref|YP_002836333.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
gi|284996520|ref|YP_003418287.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
gi|227455580|gb|ACP34267.1| Radical SAM domain protein [Sulfolobus islandicus L.S.2.15]
gi|228008649|gb|ACP44411.1| Radical SAM domain protein [Sulfolobus islandicus Y.G.57.14]
gi|284444415|gb|ADB85917.1| Radical SAM domain protein [Sulfolobus islandicus L.D.8.5]
Length = 344
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 48/182 (26%), Gaps = 36/182 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + L + + +
Sbjct: 36 CNLRCRM--------CPF----------WRRKDEKLLSLEEEVLMLKSLERAGVLFMGFE 77
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
GGEPLL+ D+ I + + F ++ TNG + S D +
Sbjct: 78 GGEPLLRRDLEQILEESYKRFYTSLVTNG-----WLLKDRVKSISENLDYLFVSIDGIDE 132
Query: 152 VFPQV----NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ------NPKWRLS 201
V ++ G R L P+ F T + +S
Sbjct: 133 VHDKIRGISGAFERAVEGIKEARKYL-PVAISF--TITRENMDQVKDVIELARKLNVNIS 189
Query: 202 VQ 203
+Q
Sbjct: 190 IQ 191
>gi|171317149|ref|ZP_02906351.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MEX-5]
gi|171097716|gb|EDT42546.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
MEX-5]
Length = 370
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRDVFDKNYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHEGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|170700217|ref|ZP_02891233.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
IOP40-10]
gi|170134850|gb|EDT03162.1| molybdenum cofactor biosynthesis protein A [Burkholderia ambifaria
IOP40-10]
Length = 370
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRDVFDKNYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHDGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|320355186|ref|YP_004196525.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
DSM 2032]
gi|320123688|gb|ADW19234.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
Length = 351
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
R + +CR+C G GR ++ + LTGGEP L D
Sbjct: 24 TRCNLRCRYC------YHGDTPGRQDMGSATLERAFARAASGSGPLHIQLTGGEPCLVPD 77
Query: 101 VPLIQALNKRG----FEIAVETNGTIEPPQ 126
+ R + + +++NGT P+
Sbjct: 78 LIEEACERARSLSRPYTMGLQSNGTCLTPE 107
>gi|262381373|ref|ZP_06074511.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262296550|gb|EEY84480.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 368
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 36 SGREQDRLSAQCRFCD-TDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
+ +C +C T +Y+ +Q+ + + + G + GG
Sbjct: 10 CYVPVTTCTLRCHYCYITQHRLFDNKLPTFKYSSEQVRKSLSRERLGGV--CLINLCGGG 67
Query: 94 EPLLQV-DVPLIQALNKRGFEIAVETN 119
E LL ++AL + G + + TN
Sbjct: 68 ETLLPPEMTEYVRALLEEGHYVMIVTN 94
>gi|229185836|ref|ZP_04313009.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BGSC 6E1]
gi|228597548|gb|EEK55195.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BGSC 6E1]
Length = 148
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 10 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 52
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 53 EI------ASNPLTDVTFSGGDPFFQ 72
>gi|14591248|ref|NP_143325.1| hypothetical protein PH1458 [Pyrococcus horikoshii OT3]
gi|3257882|dbj|BAA30565.1| 587aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 587
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G +R + C +C F +G ++Q+ ++
Sbjct: 124 CPFDCGLCPRHRSHTSLINIVLTNRCNLSCWYC--FFYAREGEPIYEPTLEQIRMMLRNA 181
Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNG 120
TGGEP L+ D+ +I+ + G+ I + T+G
Sbjct: 182 KKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEEGYDHIQLNTDG 226
>gi|326388685|ref|ZP_08210278.1| radical SAM domain-containing protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206936|gb|EGD57760.1| radical SAM domain-containing protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 424
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 30 SGCNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQW 78
+GC G D ++ C C F G + ++ + + +
Sbjct: 35 AGCPFDCGLCPDHEQHSCLAIIEVTEACDLACPVCFADAADRNGRHRPLAEI-ETMLDVL 93
Query: 79 ITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
+ E E ++GGEP L + ++ A+ +R + + TNG
Sbjct: 94 VESEGEPDLVQISGGEPTLHPEFFAILDAVKRRPIRHVMINTNG 137
>gi|319790216|ref|YP_004151849.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
gi|317114718|gb|ADU97208.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
Length = 376
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 25/144 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CR ++ G ++ + L+++ + VLT
Sbjct: 20 CNLQC--------IHCR-----SASTMESEQGDFSTEDGKKLLDDIAKLSKPT---VVLT 63
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLK 142
GGEPLL+ L + K GF + + TNGT GI + +S
Sbjct: 64 GGEPLLREDIWELAEYGTKLGFRMCIATNGTLVDDEVCRKMKEVGIRMVSLSLDGSTPEI 123
Query: 143 IKGGQELKLVFPQVNVSPENYIGF 166
++ + V + E +
Sbjct: 124 HDDFRKQPGAYEGVIKAAELFNKH 147
>gi|147919895|ref|YP_686354.1| putative molybdopterin biosynthesis protein A [uncultured
methanogenic archaeon RC-I]
gi|121685400|sp|Q0W3L5|MOAA_UNCMA RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|110621750|emb|CAJ37028.1| putative molybdopterin biosynthesis protein A [uncultured
methanogenic archaeon RC-I]
Length = 307
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 17/172 (9%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
+R + +C +C + G V+++A + I +GGEPLL+ D
Sbjct: 19 NRCNLKCIYC---HNEGEEDSGSEITVEEVAQI---ARICARYGVDKIKFSGGEPLLRRD 72
Query: 101 VPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
I +++V TNG G+D + VS + + + K F
Sbjct: 73 FDEILRALPPMRDVSVTTNGTLLAARAESLKESGLDRVNVSLDSMDRDRFTFITQCKGQF 132
Query: 154 PQVNVSPENYIGFDFERFSLQPMDGP-FLEENTNLAISYCFQNPKWRLSVQT 204
+V + + + + E+ + I Y P L +Q
Sbjct: 133 DKVLDGIDAALSVGLTPVKINMVYLKGINEDEVDRMIDYVRGKP---LVLQI 181
>gi|296387013|ref|ZP_06876512.1| heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAb1]
Length = 111
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+ C + G ++ I++ G R +L+
Sbjct: 37 CNLT-----------CKHCYS--TSTDSDFRGELETAEILRGIDDLRAAG---VRVLILS 80
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPL+ D+ + + G +A+ +NG
Sbjct: 81 GGEPLMHPDLFEIAAHARQAGMFVALSSNG 110
>gi|258406073|ref|YP_003198815.1| Radical SAM domain-containing protein [Desulfohalobium retbaense
DSM 5692]
gi|257798300|gb|ACV69237.1| Radical SAM domain protein [Desulfohalobium retbaense DSM 5692]
Length = 394
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 17/93 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
CNL + I + DQ +I++
Sbjct: 47 TQRCNLKCVHCYAQA-------------IDPEGKDEISTDQGKAIIDDL---AAFGAPVM 90
Query: 89 VLTGGEPLLQVDVPLIQ-ALNKRGFEIAVETNG 120
+ +GGEPL++ D+P + +G + TNG
Sbjct: 91 LFSGGEPLVRKDLPELASYAVSKGMRAVISTNG 123
>gi|322417559|ref|YP_004196782.1| Radical SAM domain-containing protein [Geobacter sp. M18]
gi|320123946|gb|ADW11506.1| Radical SAM domain protein [Geobacter sp. M18]
Length = 357
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 25/150 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
CNL CR C ++ +G + ++ L++E +
Sbjct: 15 TQRCNLKC--------VHCR-CSSELTSSEGD----FTTEEGKKLLKEI---ADFSKPVV 58
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGC 139
VL+GGEPL++ D+ L + G + + TNG I + +S
Sbjct: 59 VLSGGEPLMRPDIFELAEYGTSLGLRMCMATNGALVTDEVCEKMKKADIKMVSLSLDGST 118
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
++ F V + E + +
Sbjct: 119 ADVHDNFRQCPGSFDGVMRAAELFKKHGQK 148
>gi|229162434|ref|ZP_04290395.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus R309803]
gi|228620913|gb|EEK77778.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus R309803]
Length = 147
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++ +
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVN 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +T +GG+P Q
Sbjct: 52 EIASNSLTD------VTFSGGDPFFQ 71
>gi|297526585|ref|YP_003668609.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
gi|297255501|gb|ADI31710.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
Length = 259
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C+FC + KG Q+ + + + RY L
Sbjct: 48 GCNL-----------RCKFCWSWRYSFYTNKGFFQTPQQVYEKLTRIAEKRKY--RYIRL 94
Query: 91 TGGEPL--LQVDVPLIQALNKRGFEIAVETNG 120
+GGEP ++ + L++ L++ F +ETNG
Sbjct: 95 SGGEPTITMKHLLQLLELLDQTKFVFILETNG 126
>gi|256829065|ref|YP_003157793.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
gi|256578241|gb|ACU89377.1| Radical SAM domain protein [Desulfomicrobium baculatum DSM 4028]
Length = 244
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
R R + +C FC + + ++ +TGGEP
Sbjct: 9 CYRITRRCNWKCHFC------QAPPDAKELSTVEHLKILRRLAQQRILS---LKITGGEP 59
Query: 96 LLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
LL+ D+ I + GF I + +NG++ P + I S
Sbjct: 60 LLRNDLEAFIDESSGLGFNITLCSNGSMFRPSVLSRIADS 99
>gi|47567883|ref|ZP_00238590.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus G9241]
gi|47555361|gb|EAL13705.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus G9241]
Length = 150
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G VD++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVDEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +T +GG+P Q
Sbjct: 55 EIASNSLTD------VTFSGGDPFFQ 74
>gi|229197709|ref|ZP_04324429.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus m1293]
gi|228585786|gb|EEK43884.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus m1293]
Length = 147
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|219855994|ref|YP_002473116.1| hypothetical protein CKR_2651 [Clostridium kluyveri NBRC 12016]
gi|219569718|dbj|BAH07702.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 311
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVL 90
NL E+++ + C C T+ K YN +Q+ +IE+Q I G
Sbjct: 84 NLNQRLEREKCKS-CGLC-TEVCTTNSRKNLIYHYNSEQILKIIEKQRIFYRYSGGGVTF 141
Query: 91 TGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+GGE LQ + L+ L + ++A+ET+G + + D + D+K +
Sbjct: 142 SGGEATLQTDILRELVNKLYDKAIDLAIETSGHFQFDKVKDILEKLNLIFIDIKHMDDGK 201
Query: 149 LKLV 152
K
Sbjct: 202 HKFY 205
>gi|167837373|ref|ZP_02464256.1| molybdenum cofactor biosynthesis protein A [Burkholderia
thailandensis MSMB43]
Length = 370
Score = 37.6 bits (86), Expect = 1.1, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 15/127 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG+ G+ + VS A D K
Sbjct: 105 NIEFLIERLAKMTTAGGRPLDITLTTNGSLLVRKAKSLRDAGLSRVTVSLDALDDTLFKR 164
Query: 146 GQELKLV 152
+
Sbjct: 165 MNDADFA 171
>gi|319953520|ref|YP_004164787.1| oxygen-independent coproporphyrinogen iii oxidase [Cellulophaga
algicola DSM 14237]
gi|319422180|gb|ADV49289.1| oxygen-independent coproporphyrinogen III oxidase [Cellulophaga
algicola DSM 14237]
Length = 378
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 21/169 (12%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
C +CD F G K + + +L+ + + GG P +
Sbjct: 11 CKQACHYCDFHFSTSMGKKEAMLSAIK-RELVLRKSEFKNEVVATIYFGGGTPSVLSTEE 69
Query: 103 LIQALNK--------RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+ +N G EI +E N I + SP + ++ E L
Sbjct: 70 IQGIINSVYANYSVVEGPEITLEANPDDLSEDKIRVLSKSPINRLSIGVQSFFEEDLKMM 129
Query: 155 -QVNVSPENYIGFDFERFSLQ----------P-MDGPFLEENTNLAISY 191
+ + S E + P M EEN LA+S+
Sbjct: 130 NRAHNSKEAKKSLEIATHYFSNISIDLIYGLPGMSNQRWEENIALALSF 178
>gi|116750344|ref|YP_847031.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116699408|gb|ABK18596.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 324
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 25/161 (15%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R +A+C FCD +L D +E + + LTGGEPLL+ D+
Sbjct: 36 RCNARCNFCD---------YWKEKPTGELGDYVE---VVRKLAPLSVSLTGGEPLLRADL 83
Query: 102 PLIQALNKRGF---EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNV 158
P + A +R F I++ TNG++ + + +AG D L +
Sbjct: 84 PELIASLRRSFGFLFISLITNGSLLTRENGVAL---WEAGLDEMSISLDYLDERHDEG-- 138
Query: 159 SPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
G +L P G NL + + +R
Sbjct: 139 --RGIHGLAGHILALAPRLGS---AGVNLCFNVVLKRGNYR 174
>gi|330508579|ref|YP_004385007.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
gi|328929387|gb|AEB69189.1| radical SAM domain protein [Methanosaeta concilii GP-6]
Length = 493
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 31 GCNLWSGREQD----------RLSAQCRF-CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC L G ++ ++++C C F G + Q+A +++
Sbjct: 79 GCPLDCGLCENHKSGTLLGIIDVTSRCNLSCPICFA-DAGNDKNEPTIGQIASMMQVLRD 137
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
+GGEP ++VD+P ++ GF +I + TNG
Sbjct: 138 QIPVPCPAIQFSGGEPTMRVDLPDIVYLAKTMGFAQILLATNG 180
>gi|254726065|ref|ZP_05187847.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus anthracis str. A1055]
Length = 150
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|229140214|ref|ZP_04268772.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-ST26]
gi|228643300|gb|EEK99573.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus BDRD-ST26]
Length = 147
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|258512763|ref|YP_003186197.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257479489|gb|ACV59808.1| molybdenum cofactor biosynthesis protein A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 341
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 41 DRLSAQCRFC-DTDFVGIQGT---KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
DR + +C +C +D G + D++A L+ G ++ R LTGGEPL
Sbjct: 25 DRCNFRCPYCMPSDVFGPDYPFLRPDALMSPDEIAKLVRALVPLGLEKVR---LTGGEPL 81
Query: 97 LQVDVPLIQALNKR---GFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLKIKG 145
L+ +V I EIA+ TNG G+ I VS A
Sbjct: 82 LRREVVEIVEKVAAVPGLHEIAMTTNGSLLTREKAMALKKAGLTRITVSLDALRPDVAAR 141
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPM--DGPFLEENTNLAISY 191
++ +V + E + + G +E +A +
Sbjct: 142 MNGVRFPVHRVLTAIEAAEEAGLAPVKVNVVVRRGWNEDEVVAIAERF 189
>gi|206975550|ref|ZP_03236463.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus H3081.97]
gi|217961003|ref|YP_002339571.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus AH187]
gi|222097055|ref|YP_002531112.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Q1]
gi|206746452|gb|EDZ57846.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus H3081.97]
gi|217062894|gb|ACJ77144.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus AH187]
gi|221241113|gb|ACM13823.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Q1]
Length = 150
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|52141935|ref|YP_084894.1| anaerobic ribonucleoside-triphosphate reductase activating
protein; organic radical activating enzyme [Bacillus
cereus E33L]
gi|51975404|gb|AAU16954.1| anaerobic ribonucleoside-triphosphate reductase activating
protein; organic radical activating enzyme [Bacillus
cereus E33L]
Length = 150
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|85813924|emb|CAF31553.1| putative fortimicin biosynthetic oxidoreductase [Micromonospora
olivasterospora]
Length = 262
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQAL 107
CD V + R + D++ + E W E R+ +GGE L +I
Sbjct: 30 CDHCIVESSPRRRERLSTDEVRATLSEAW---ENGRRHVTFSGGEVFLYPREMREVITWA 86
Query: 108 NKRGFEIAVETNGTIEPPQG 127
+ G+ + VE+N
Sbjct: 87 RELGYVVDVESNAFWARSDE 106
>gi|189219248|ref|YP_001939889.1| pyrroloquinoline quinone biosynthesis protein PqqE
[Methylacidiphilum infernorum V4]
gi|189186106|gb|ACD83291.1| Coenzyme PQQ synthesis protein E, radical SAM superfamily enzyme
[Methylacidiphilum infernorum V4]
Length = 386
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDV 101
QC +C ++ + ++ +++E G + + +GGEPL++ +
Sbjct: 32 CPLQCPYC-SNSTSYLHWLKKELSTEEWIRVLKEAQKLGILQVYF---SGGEPLVRKDLI 87
Query: 102 PLIQALNKRGFEIAVETNGTIEPPQ 126
LI+ + GF + T GT+ +
Sbjct: 88 TLIRTAHDLGFYSNMSTGGTLIHKE 112
>gi|229583360|ref|YP_002841759.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
gi|228014076|gb|ACP49837.1| Radical SAM domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 344
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 48/182 (26%), Gaps = 36/182 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + L + + +
Sbjct: 36 CNLRCRM--------CPF----------WRRKDEKLLSLEEEVLMLKSLERAGVLFMGFE 77
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
GGEPLL+ D+ I + + F ++ TNG + S D +
Sbjct: 78 GGEPLLRRDLEQILEESYKRFYTSLVTNG-----WLLKDRVKSISENLDYLFVSIDGIDE 132
Query: 152 VFPQV----NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ------NPKWRLS 201
V ++ G R L P+ F T + +S
Sbjct: 133 VHDKIRGISGAFERAVEGIKEARKYL-PVAISF--TITRENMDQVKDVIELARKLNVNIS 189
Query: 202 VQ 203
+Q
Sbjct: 190 IQ 191
>gi|303257958|ref|ZP_07343967.1| molybdenum cofactor biosynthesis protein A [Burkholderiales
bacterium 1_1_47]
gi|302859301|gb|EFL82383.1| molybdenum cofactor biosynthesis protein A [Burkholderiales
bacterium 1_1_47]
Length = 367
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 15/130 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +CR+C + + V ++I I LTGGEPLL+
Sbjct: 45 DRCNFRCRYCMPKEKFEKDHCFLSHTEVLSFEEIIRLAKIFAANGIEKIRLTGGEPLLRK 104
Query: 100 DVPL-------IQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
+ ++ N + ++AV TNG G+ + VS A K
Sbjct: 105 GIEFLIEELSKLKTWNGKPLDVAVTTNGAALSAKAKSLAAAGLKRLTVSLDAMDPQIYKD 164
Query: 146 GQELKLVFPQ 155
++ +
Sbjct: 165 LNDVNFPIEK 174
>gi|323526884|ref|YP_004229037.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
CCGE1001]
gi|323383886|gb|ADX55977.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
CCGE1001]
Length = 369
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + LTGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYAFLPHSALLSFEEIERLARLFVAHGVEKIRLTGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIERLSQLITPAGRPLDLTLTTNGSLLARKARSLKDAGLSRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFAVADV 175
>gi|288936373|ref|YP_003440432.1| glycyl-radical enzyme activating protein family [Klebsiella
variicola At-22]
gi|290510571|ref|ZP_06549941.1| pyruvate formate lyase activating enzyme [Klebsiella sp. 1_1_55]
gi|288891082|gb|ADC59400.1| glycyl-radical enzyme activating protein family [Klebsiella
variicola At-22]
gi|289777287|gb|EFD85285.1| pyruvate formate lyase activating enzyme [Klebsiella sp. 1_1_55]
Length = 299
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
G NV+ + + ++ G L+GGEP + + L +A ++ G AVET
Sbjct: 101 GEEKNVEAIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVETC 160
Query: 120 GTIEP 124
+
Sbjct: 161 LHVPW 165
>gi|161075741|gb|ABX56618.1| coenzyme PQQ synthesis protein E [Methylacidiphilum infernorum V4]
Length = 373
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDV 101
QC +C ++ + ++ +++E G + + +GGEPL++ +
Sbjct: 19 CPLQCPYC-SNSTSYLHWLKKELSTEEWIRVLKEAQKLGILQVYF---SGGEPLVRKDLI 74
Query: 102 PLIQALNKRGFEIAVETNGTIEPPQ 126
LI+ + GF + T GT+ +
Sbjct: 75 TLIRTAHDLGFYSNMSTGGTLIHKE 99
>gi|71907598|ref|YP_285185.1| radical SAM family protein [Dechloromonas aromatica RCB]
gi|71847219|gb|AAZ46715.1| Radical SAM [Dechloromonas aromatica RCB]
Length = 370
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 36/194 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL C+FC + + + E
Sbjct: 91 TAGCNLA-----------CKFCQNWDISKSKDMDRLMDSASPQAIAEA---ARRYGADAV 136
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T +P++ + + A ++G T G I P ++ V A DLK
Sbjct: 137 AYTYNDPVIFAEYAIDTALACREQGIRNVAVTAGYIHPTPAREFFAVMDAANVDLKAFTE 196
Query: 147 Q---ELKLVFPQVNVSPENYIGFDFERF-----SLQPMDGPFLEENTNLAISYCFQ---- 194
+L + Q + YI + + + L P +E L+ +
Sbjct: 197 DFYRKLCVAHLQPILDTLAYIHHETDCWLEITTLLIPGQNDSPQEVNELSTWIARELGPD 256
Query: 195 --------NPKWRL 200
+P W++
Sbjct: 257 VPLHFSAFHPDWKM 270
>gi|228907890|ref|ZP_04071742.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
IBL 200]
gi|228851785|gb|EEM96587.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
IBL 200]
Length = 333
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + D IE + LTGGEPLL+
Sbjct: 18 DRCNFRCTYCMPAEVFGPDYPFLQEELLLTFDEIERLARLFISMGVNKIRLTGGEPLLRK 77
Query: 100 DVPL--IQALNKRGFE-IAVETNGTI 122
D+P+ + G + I + TNG
Sbjct: 78 DLPMLIARLAKLEGLKDIGLTTNGIH 103
>gi|21226411|ref|NP_632333.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
gi|20904669|gb|AAM30005.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
Length = 399
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + ++ LI++ + +
Sbjct: 50 CNLKCVHCYAQAK-------------DEEFKNELSTEEGKALIDDL---AAFGSPVMLFS 93
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
GGEP ++ D+P + A ++G + TNG
Sbjct: 94 GGEPTIRKDLPELAAYAREKGMRAVISTNG 123
>gi|20091853|ref|NP_617928.1| coenzyme PQQ synthesis protein E [Methanosarcina acetivorans C2A]
gi|19917045|gb|AAM06408.1| coenzyme PQQ synthesis protein E [Methanosarcina acetivorans C2A]
Length = 399
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + ++ LI++ + +
Sbjct: 50 CNLKCVHCYAQAK-------------DMEFKNELSTEEGKALIDDL---AAFGSPVMLFS 93
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
GGEP ++ D+P + A ++G + TNG
Sbjct: 94 GGEPTMRKDLPELAAYAREKGMRAVISTNG 123
>gi|315925471|ref|ZP_07921682.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621372|gb|EFV01342.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
23263]
Length = 475
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85
GCN+ D SA C C G + D++ D+IE+ G
Sbjct: 103 GCNVPWAILLDPTSACNLHCTGC------WAAEYGNKLNLTFDEIDDIIEQGKQLGVF-- 154
Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ TGGEPL++ D + TNG
Sbjct: 155 -MYIYTGGEPLVRRDDLIKLCEKHSDCTFLSFTNG 188
>gi|189460140|ref|ZP_03008925.1| hypothetical protein BACCOP_00776 [Bacteroides coprocola DSM 17136]
gi|189433130|gb|EDV02115.1| hypothetical protein BACCOP_00776 [Bacteroides coprocola DSM 17136]
Length = 462
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ +C +C + G VD+ +E+ + + L GGEPLL+
Sbjct: 116 CNFRCPYCFEERKKKDGKLKIAMTKEMVDKAYQAMEKIEPQQQLHCKDIALYGGEPLLKE 175
Query: 100 DVP----LIQALNKRGFEIAVETNGT 121
+ +++ ++G++ TNG
Sbjct: 176 NRDIVEYIVRKGCEKGYKFHALTNGY 201
>gi|169835528|ref|ZP_02868716.1| formate acetyltransferase activating enzyme [candidate division TM7
single-cell isolate TM7a]
Length = 154
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 28/131 (21%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-------------------CRFCDT 52
T G G F GC L + + + C C T
Sbjct: 13 TFDGPGIRT-----VVYFKGCPLRCLWCSNPETQKLENEFWDYDGSLYKGNRTSCSDCLT 67
Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL--IQALNKR 110
++++ ++ + G L+GGE L+ + + L
Sbjct: 68 --TSTLKQVAKYMTLEEVFTIVMKDENFYRNSGGGVTLSGGEVLVNSAFAIKLFEKLKDE 125
Query: 111 GFEIAVETNGT 121
A+ET G
Sbjct: 126 YVNTAIETTGY 136
>gi|307635039|gb|ADI85246.2| magnesium-dependent deoxyribonuclease, TatD family, and radical SAM
domain iron-sulfur oxidoreductase [Geobacter
sulfurreducens KN400]
Length = 462
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71
GE A R+A R N +R S +C FC D D+ + D
Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFD-DYTVKGHHLRLDHEPDS-- 313
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGID 129
+ GEP+L++D+ + + L KRGF I + T+G G +
Sbjct: 314 AEVLAAVGEPGPVDEIVFCGFGEPMLRLDLIVEVARELKKRGFRIRINTDGQANLVHGRN 373
>gi|228905496|ref|ZP_04069448.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis IBL 4222]
gi|228854132|gb|EEM98838.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis IBL 4222]
Length = 146
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 25/108 (23%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC C C G +V ++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HHCLGCHNP-KSWNLYNGTEMSVKEIIK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
I + +GG+P Q + +A+ + + T
Sbjct: 52 EI------SKNPLTDVTFSGGDPFFQAIEVKEVAKAVKSLNKNLWIYT 93
>gi|217973237|ref|YP_002357988.1| Radical SAM domain-containing protein [Shewanella baltica OS223]
gi|217498372|gb|ACK46565.1| Radical SAM domain protein [Shewanella baltica OS223]
Length = 298
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 30/226 (13%), Positives = 56/226 (24%), Gaps = 53/226 (23%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+ +F GCN + +
Sbjct: 20 FSCVDGPGS---RLVLF--LQGCNYQCKNCHNPHTIGLCDACGDCVATCPDNALTLINLN 74
Query: 47 -----------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
C CDT + + +++ ++GGE
Sbjct: 75 NKPRIQWDKNCCSQCDTCLAVCPKQASPKVTHYTVEEILGILHRQRHF-INGITVSGGEA 133
Query: 96 --LLQVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
L + L + + ++TNG++ + A DLK
Sbjct: 134 SLQLPFIIELFKGIKATESLSHLTCMLDTNGSLSLTGWHKLLPFLDGAMVDLKAWQQDTH 193
Query: 150 KLVFPQVNVS-------PENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ + + N + R P + +E LA
Sbjct: 194 RYITGRDNHAVFKSIQLLAQQQKLYEVRLLHIPSITDYEQEIEALA 239
>gi|126459538|ref|YP_001055816.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
11548]
gi|126249259|gb|ABO08350.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 355
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F F+GCN +C +C + G + LA + Q E+
Sbjct: 135 TIF--FAGCNF-----------RCVYCQNWDISQDPEAGVEVTAEALAAM---QIRLREE 178
Query: 84 EGRYCVLTGGEPL 96
R GGEP
Sbjct: 179 GARNINWVGGEPT 191
>gi|39997584|ref|NP_953535.1| TatD family deoxyribonuclease [Geobacter sulfurreducens PCA]
gi|39984476|gb|AAR35862.1| deoxyribonuclease, TatD family [Geobacter sulfurreducens PCA]
Length = 462
Score = 37.6 bits (86), Expect = 1.2, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 15 GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLA 71
GE A R+A R N +R S +C FC D D+ + D
Sbjct: 261 GESDQAARIAYRIR----NSLYLNITNRCSNRCSFCAKFD-DYTVKGHHLRLDHEPDS-- 313
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIEPPQGID 129
+ GEP+L++D+ + + L KRGF I + T+G G +
Sbjct: 314 AEVLAAVGEPGPVDEIVFCGFGEPMLRLDLIVEVARELKKRGFRIRINTDGQANLVHGRN 373
>gi|328882140|emb|CCA55379.1| hypothetical protein SVEN_2093 [Streptomyces venezuelae ATCC 10712]
Length = 102
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 25/75 (33%)
Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPL 103
S C CD K + + + W +C + G P +PL
Sbjct: 26 SVACPHCDAAPHRPCRVKATGHPLPDIHPARRSAWAETTAVCPHCQVAPGTPCHTEGIPL 85
Query: 104 IQALNKRGFEIAVET 118
++ R + +A ET
Sbjct: 86 PDQVHARRYLVAEET 100
>gi|239627654|ref|ZP_04670685.1| formate acetyltransferase activating enzyme [Clostridiales
bacterium 1_7_47_FAA]
gi|239517800|gb|EEQ57666.1| formate acetyltransferase activating enzyme [Clostridiales
bacterium 1_7_47FAA]
Length = 283
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 39/142 (27%), Gaps = 36/142 (25%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQD-----------RLSAQCRFC----------DT 52
G G VF GC L + R C C DT
Sbjct: 17 DGPGIRT---TVF--LKGCPLRCMWCHNPEGLSYKPQLMRSGNGCLHCGKCRDACSHPDT 71
Query: 53 DFVGIQGTK----------GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ + G + LA + + E+ G +GGEPL Q
Sbjct: 72 CVLCGSCVRACPKNLIRICGEEVTAEWLAGHLLKDKDYLEQVGGGITFSGGEPLGQPRFL 131
Query: 103 LIQALNKRGFEIAVETNGTIEP 124
L +ET+G +P
Sbjct: 132 LECLERLGDVHTCIETSGYAQP 153
>gi|297617592|ref|YP_003702751.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
gi|297145429|gb|ADI02186.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
Length = 339
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QVDVPLIQAL 107
FCD + N ++ +LI E G + + +GGEPL+ L
Sbjct: 14 FCDHCYRDAGLKLSEELNTEEGKELIREIKKAGF---KIMIFSGGEPLMRHDIFELGDYA 70
Query: 108 NKRGFEIAVETNG 120
++G + TNG
Sbjct: 71 RQQGLRPVLGTNG 83
>gi|326201082|ref|ZP_08190954.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
gi|325988650|gb|EGD49474.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
Length = 362
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R C G + + ++ ++ + + +L
Sbjct: 71 CNLRCSGCYARELHSCS---------DGVRNSQLTWERWEEV---FGEAEDLGISFILLA 118
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPL++ DV +++A +++ + TNG
Sbjct: 119 GGEPLMRRDV-VVKAADRKNIIFPIFTNG 146
>gi|206580344|ref|YP_002239527.1| glycyl-radical enzyme activating protein family [Klebsiella
pneumoniae 342]
gi|206569402|gb|ACI11178.1| glycyl-radical enzyme activating protein family [Klebsiella
pneumoniae 342]
Length = 299
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETN 119
G NV+ + + ++ G L+GGEP + + L +A ++ G AVET
Sbjct: 101 GEEKNVEAIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVETC 160
Query: 120 GTIEP 124
+
Sbjct: 161 LHVPW 165
>gi|78358321|ref|YP_389770.1| radical-activating enzyme [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78220726|gb|ABB40075.1| Radical-activating enzyme [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 320
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 34 LWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
L G + CR C D G + + +L ++IEE E G L G
Sbjct: 89 LRHGFAEGAQCIGCRRCEDVCPSSALAVVGEQKTISELLEVIEEDRPFYETSGGGVTLGG 148
Query: 93 GEPLLQVDVPLI--QALNKRGFEIAVETNGT 121
GE L+Q + + A + G A+ET G
Sbjct: 149 GEVLMQPEAAVNLLAACKQHGINTAIETCGY 179
>gi|146283853|ref|YP_001174006.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501]
gi|71841660|gb|AAZ43114.1| NirJ [Pseudomonas stutzeri A1501]
gi|145572058|gb|ABP81164.1| heme d1 biosynthesis protein NirJ [Pseudomonas stutzeri A1501]
Length = 393
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 17/127 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CR C + + +I++ E R +L+
Sbjct: 40 CNLT-----------CRHC--YATSADSEFRDELDTAEALRVIDDL---HEAGVRVLILS 83
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEPLL+ L +GF +A+ TNGT+ I I + + I G + +
Sbjct: 84 GGEPLLRGDIFQLADYARDKGFFVALSTNGTLIDEGNIARIAAARFDYVGISIDGLEAVH 143
Query: 151 LVFPQVN 157
+ Q+
Sbjct: 144 DDWRQLK 150
>gi|330815962|ref|YP_004359667.1| Molybdenum cofactor biosynthesis protein A [Burkholderia gladioli
BSR3]
gi|327368355|gb|AEA59711.1| Molybdenum cofactor biosynthesis protein A [Burkholderia gladioli
BSR3]
Length = 370
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + +E I +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPREVFDKDYPFLPHSALLSLEELERTARIFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNKRGFEI-------AVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R + + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIERLARMETVDGRPLDLTLTTNGSLLARKARSLRDAGLTRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFASADV 175
>gi|255525977|ref|ZP_05392902.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
gi|255510317|gb|EET86632.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
Length = 301
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 33 NLWSGREQDRLSA--QC-RFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
NL + EQ++ A C C T + Y+ +++ +IE+Q I G
Sbjct: 74 NLNTPLEQEKCKACGACVNECPTK---SRKNLIYDYSSEEILKIIEKQKIFYRHSGGGVT 130
Query: 90 LTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
+GGE +Q + L L ++A+ET+G E + D + D+K
Sbjct: 131 FSGGEATMQVGILRELAYKLYDSAVDLAIETSGYFEFEEVKDILEKMSLIFIDIKHMDDS 190
Query: 148 ELK 150
+ K
Sbjct: 191 KHK 193
>gi|116694994|ref|YP_840570.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
eutropha H16]
gi|113529493|emb|CAJ95840.1| pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein E
[Ralstonia eutropha H16]
Length = 388
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVL 90
LW E R C FC R+ + + L
Sbjct: 21 PLWLLAELTYRCPLHCAFC------SNPVDYARHTAELSTVQWCDVFSQARALGAVQLGL 74
Query: 91 TGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
+GGEPLL+ D+ + ++ + GF + T+G
Sbjct: 75 SGGEPLLRKDLEVLVRHAHGLGFYTNLITSG 105
>gi|52787503|ref|YP_093332.1| hypothetical protein BLi03823 [Bacillus licheniformis ATCC 14580]
gi|319647988|ref|ZP_08002205.1| hypothetical protein HMPREF1012_03244 [Bacillus sp. BT1B_CT2]
gi|52350005|gb|AAU42639.1| putative protein [Bacillus licheniformis ATCC 14580]
gi|317389623|gb|EFV70433.1| hypothetical protein HMPREF1012_03244 [Bacillus sp. BT1B_CT2]
Length = 170
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF +GC C G +VD++ +
Sbjct: 28 VDGEGLRT---VVF--LAGCPHMCEG-----------CHNKQSW-NINNGFDMSVDEVFE 70
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I + +GGEPLL
Sbjct: 71 EIM------KNPLTNVTYSGGEPLLH 90
>gi|75763333|ref|ZP_00743075.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74489180|gb|EAO52654.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 149
Score = 37.6 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 25/108 (23%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC C C G +V ++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HHCLGCHNP-KSWNLYNGTEMSVKEIIK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
I + +GG+P Q + +A+ + + T
Sbjct: 55 EI------SKNPLTDVTFSGGDPFFQAIEVKEVAKAVKSLNKNLWIYT 96
>gi|323705251|ref|ZP_08116826.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535153|gb|EGB24929.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 326
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +FC + Q +G + +L ++ ++Q +
Sbjct: 81 GCNLRC-----------QFCQNWEISQQRLEGEYLSSSKLVEIAKKQ-----QGNVGIAY 124
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EP + + + + +K G + + TNG I + I D+K +
Sbjct: 125 TYNEPSIWYEYVLDSAKISHKEGLKNVLVTNGYINIDPLREIIKYIDAVNIDVKAFSNEY 184
Query: 149 LKLVFP 154
K +
Sbjct: 185 YKRICH 190
>gi|317471208|ref|ZP_07930576.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
gi|316901314|gb|EFV23260.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
Length = 362
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R S C +G G + Q D+ ++ G + +L
Sbjct: 69 CNLHCKGCYARASGACA---------EGQPEGELSGAQWNDIFDQAEKLG---ISFILLA 116
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
GGEPL++ DV +K+ V TNGT+
Sbjct: 117 GGEPLMRRDVIESAGRHKK-VIFPVFTNGTLMQEGC 151
>gi|317473657|ref|ZP_07932946.1| queuosine biosynthesis protein QueE [Anaerostipes sp. 3_2_56FAA]
gi|316898947|gb|EFV20972.1| queuosine biosynthesis protein QueE [Anaerostipes sp. 3_2_56FAA]
Length = 70
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLSVQTHK 206
+ E + + P+ G + + + ++ K R +Q HK
Sbjct: 8 LEKAKEVIERFSLCEKAIVYFSPVFGAIPP---DEIVEFMKEHRMNKVRFQIQIHK 60
>gi|213023304|ref|ZP_03337751.1| hypothetical protein Salmonelentericaenterica_12265 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 242
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 34/197 (17%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVSQCPHHALSIDGGK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + D + ++GGE L
Sbjct: 69 VVWRSDVCEQCDTCLK-MCPQQATPMAQTMSIDDVLRHIRKASLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L AL + V++NG + + V DLK + +
Sbjct: 128 PFIVALFTALKADPQLQRLTCLVDSNGQLSETGWQKLLPVCDGVMLDLKAWKSECHHRLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I F R
Sbjct: 188 GRDNTHIKHSIRFLAAR 204
>gi|78044893|ref|YP_361076.1| radical SAM domain-containing protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997008|gb|ABB15907.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 330
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 16/128 (12%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN G FC + G + + L L + +E
Sbjct: 79 TFGCNFRCG-----------FCQNYEISQIAETGEKLLPEDLVKLAQRY---KSQEMIGV 124
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T EP++ + + GF+ + TNG I + DLK
Sbjct: 125 AYTYSEPVVWYEYIEASAPLIKELGFKTVLVTNGFINKEPLKKILPFIDALNIDLKGITE 184
Query: 147 QELKLVFP 154
+ + +
Sbjct: 185 EYYRDICQ 192
>gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2]
gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2]
Length = 302
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 55 VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGF 112
G ++ D L ++I++ + E G +GGEPL+Q L++ + G
Sbjct: 98 ANAMEKTGRCHSTDSLMEMIKKDRLFYESSGGGVTFSGGEPLVQWRSLDRLLRGCTRLGI 157
Query: 113 EIAVETNGTIEP 124
AV+T+G
Sbjct: 158 HTAVDTSGYSTW 169
>gi|159904963|ref|YP_001548625.1| radical SAM domain-containing protein [Methanococcus maripaludis
C6]
gi|159886456|gb|ABX01393.1| Radical SAM domain protein [Methanococcus maripaludis C6]
Length = 457
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 33/193 (17%)
Query: 27 CR-FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEK 83
R SGCN+ C FC D ++ Y +VD L E+
Sbjct: 133 VRGLSGCNIN-----------CPFCSVDEGVHSKSRKNDYYVDVDYLVSEYEKIADFKGY 181
Query: 84 EGRYCVLTG-GEPLLQVDVP-----LIQALNKRGFEIAVETNGTI--------EPPQGID 129
L G GEP L +P L + +K ++++TNG G+
Sbjct: 182 NKLEAHLDGQGEPSLYYPLPDLVQSLNEINSKNKGIVSIQTNGVHLTEKLIDDLEVAGLH 241
Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM-----DGPFLEEN 184
I +S A + KG K + + YI + P+ + ++
Sbjct: 242 RINLSINAIDENFSKGLSGSKNYDIEKIMEIAEYIKNSKIHLLIAPLLLPNYNDEEFKKV 301
Query: 185 TNLAISYCFQNPK 197
+ A+ +NP+
Sbjct: 302 LDFAVDLEQKNPQ 314
>gi|329907318|ref|ZP_08274630.1| Molybdenum cofactor biosynthesis protein A [Oxalobacteraceae
bacterium IMCC9480]
gi|327547006|gb|EGF31898.1| Molybdenum cofactor biosynthesis protein A [Oxalobacteraceae
bacterium IMCC9480]
Length = 371
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + + + + I I + LTGGEPLL+
Sbjct: 48 DRCNFRCVYCMPKELFDKDYQFLPQTALLSFEEITRMARIFIDHGIEKIRLTGGEPLLRK 107
Query: 100 DVPLIQALNK-------RGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
+ + + R +I + TNG G+ + VS A + +
Sbjct: 108 HLEKLIEMLSRLKTHSGRDLDITLTTNGSLLAKKAQSLKDAGLKRVTVSLDAIDEATFRM 167
Query: 146 GQELKLVFPQV 156
++ V
Sbjct: 168 MNDVDFPVADV 178
>gi|324327499|gb|ADY22759.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 150
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|303244975|ref|ZP_07331299.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
gi|302484686|gb|EFL47626.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
Length = 109
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G +L +++ + + + ++
Sbjct: 20 CNLK-----------CFYCH--REGHDSENINLMTPSELGKIVK---TSLKFGIKKVKIS 63
Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNGTI 122
GGEPLL+ D+P + + +I++ TNG
Sbjct: 64 GGEPLLRNDLPQIIESISDDNLKDISLTTNGIF 96
>gi|255019723|ref|ZP_05291800.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
caldus ATCC 51756]
gi|254970791|gb|EET28276.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
caldus ATCC 51756]
Length = 347
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-V 101
+ +C++C T G + A+L+ + ++ LTGGEPL+ V
Sbjct: 39 CNFRCQYC-TPEDGTPYFDRAEHLQR--AELVRLLQLFVGMGLQHLRLTGGEPLIHPHVV 95
Query: 102 PLIQALNKRGF-EIAVETNG 120
++A G +I++ +NG
Sbjct: 96 DYVRAAKAMGIGKISISSNG 115
>gi|78776383|ref|YP_392698.1| radical SAM family protein [Sulfurimonas denitrificans DSM 1251]
gi|78496923|gb|ABB43463.1| Radical SAM [Sulfurimonas denitrificans DSM 1251]
Length = 369
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
+ +C FC D++G + + + L D I E G K + GEP L +P
Sbjct: 53 CNHRCTFCSVDYIGYKSI---KQDEKILGDRIREMASLGVKSIMFA--GEGEPTLYKPLP 107
Query: 103 -LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
++ ++ G + ++ TN + WI VS AG + K
Sbjct: 108 NILDICSEVGIDTSLTTNAVAINETTVKNYVKNCKWIKVSINAGDRDTYASVHQTKPEDF 167
Query: 155 QV---NVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
N+S I + L EN AI +
Sbjct: 168 DKVVDNLSTAVKIKKENNYSCTIGAQMLLLPENMQSAILLAKK 210
>gi|307730551|ref|YP_003907775.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
CCGE1003]
gi|307585086|gb|ADN58484.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp.
CCGE1003]
Length = 369
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + + ++ + IE + LTGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAIFDKDYAFLPHSALLSFEEIERLARLFVAHGVEKIRLTGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIERLAQLTTPTGRPLDLTLTTNGSLLARKARSLKDAGLSRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFAVADV 175
>gi|242280416|ref|YP_002992545.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio salexigens DSM 2638]
gi|242123310|gb|ACS81006.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio salexigens DSM 2638]
Length = 226
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 18/104 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF GCNL C T R ++ + ++ K
Sbjct: 28 CVFF-LGGCNLN--------------CPTCHNFDMAWNMERLHLLS-REDMKSFLRNRAK 71
Query: 84 EGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPP 125
+TGGEP + L + I +++NG +
Sbjct: 72 WLDGVTITGGEPTTVPNLGEILYEVRQVSKLPIKMDSNGMLPDI 115
>gi|218898628|ref|YP_002447039.1| hypothetical protein BCG9842_B1672 [Bacillus cereus G9842]
gi|218543686|gb|ACK96080.1| hypothetical protein BCG9842_B1672 [Bacillus cereus G9842]
gi|326941251|gb|AEA17147.1| hypothetical protein CT43_CH3480 [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 115
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 114 IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
+ +E NG G+ + V+ KA L ++ +LK + + I F
Sbjct: 11 VQMELNGVFWNEDGVAEMTVTTKAEHSLLLRLVVDLKSKTIRATSAD---IVNGFCPLCK 67
Query: 174 QP-------MDGPFLEENTNLAISYCFQNPKWRLSV 202
Q D E A + ++P++R +
Sbjct: 68 QKKDKCSELNDLQNKMEILEEAYDWVREHPEYRFQL 103
>gi|311281046|ref|YP_003943277.1| Radical SAM domain-containing protein [Enterobacter cloacae SCF1]
gi|308750241|gb|ADO49993.1| Radical SAM domain protein [Enterobacter cloacae SCF1]
Length = 287
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 46/199 (23%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVLHCPHGALSFQAGR 68
Query: 42 --RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
A C+ CDT + + + D + +Q + ++GGE Q
Sbjct: 69 VYWQEADCQQCDTC-LHMCPQQATPMAQQMSVDDVLQQILKASPFIEGITVSGGEATTQ- 126
Query: 100 DVPLIQALNKR--------GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
+P I AL +R V++NG + + + DLK Q
Sbjct: 127 -LPFICALFERISMTPALSHLTCLVDSNGELGVSGWEKLLPLCDGVMVDLKAWDDQVHTA 185
Query: 152 VFPQVNVSPENYIGFDFER 170
+ + N I + ER
Sbjct: 186 ITGRGNSRIRESIRWLAER 204
>gi|291547692|emb|CBL20800.1| hypothetical protein CK1_29290 [Ruminococcus sp. SR1/5]
Length = 87
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 161 ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP--KWRLSVQTHKFI 208
E Y P+ G + + + +L +Q HK I
Sbjct: 33 EKYRLVGKTAVYFSPVFGRIQP---VEIVDFLMEKKLNDVKLQIQLHKVI 79
>gi|229174263|ref|ZP_04301796.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus MM3]
gi|228609120|gb|EEK66409.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus MM3]
Length = 147
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIMK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +T +GG+P Q
Sbjct: 52 EIASNTLTD------VTFSGGDPFFQ 71
>gi|295091670|emb|CBK77777.1| glycerol dehydratase, cobalamin-independent, small subunit
[Clostridium cf. saccharolyticum K10]
Length = 305
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 7/146 (4%)
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
KG + V QL +++ T + G L+GGEPL+Q + L++A +G++ A+ET
Sbjct: 107 KGKKMTVQQLIRELKKDATTYRRSGGGITLSGGEPLVQYEFAAELLKACQSQGWDTAIET 166
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKI---KGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
G I D+K + ++ + + + I + P
Sbjct: 167 TGAGLSEAVEQVIPYVDTVLLDIKHLDTETHRKFTGIGNEQILKNAARISEISKTVIRVP 226
Query: 176 MDGPF--LEENTNLAISYCFQNPKWR 199
+ F EE+ + R
Sbjct: 227 VIPGFNCSEESIRAIAEFAKTLRGVR 252
>gi|134094629|ref|YP_001099704.1| molybdenum cofactor biosynthesis protein A [Herminiimonas
arsenicoxydans]
gi|133738532|emb|CAL61577.1| Molybdenum cofactor biosynthesis protein A [Herminiimonas
arsenicoxydans]
Length = 373
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + I + LTGGEPLL+
Sbjct: 48 DRCNFRCVYCMPKEVFDKDYAFLPHSSLLSFEEITRIASLFVAHGVEKIRLTGGEPLLRK 107
Query: 100 DVPLIQALNK-------RGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKG 145
+V + A+ R ++ + TNG G+ + VS A D K
Sbjct: 108 NVERLIAMLSALRTPDGRELDLTLTTNGSLLARKAQALKDAGLKRVTVSLDALDDKIFKQ 167
Query: 146 GQELKLVFPQV 156
++ V
Sbjct: 168 MNDVDFAVSDV 178
>gi|91784732|ref|YP_559938.1| molybdenum cofactor biosynthesis protein A [Burkholderia xenovorans
LB400]
gi|91688686|gb|ABE31886.1| GTP cyclohydrolase subunit MoaA [Burkholderia xenovorans LB400]
Length = 369
Score = 37.2 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE I LTGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYTFLPHSALLSFEEIERLARIFVAHGVEKIRLTGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIDRLARLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFAVADV 175
>gi|282163409|ref|YP_003355794.1| hypothetical protein MCP_0739 [Methanocella paludicola SANAE]
gi|282155723|dbj|BAI60811.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 362
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +CR C +D + G + ++ + + +T
Sbjct: 41 CNL-----------RCRHCGSDCTVPKP---GELSTGEIKAAFKSIASDYDARSIMVAVT 86
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGT 121
GGEPLL+ D+ ++ + GF + TNG
Sbjct: 87 GGEPLLRKDLFDVMGYAHGLGFPWGMVTNGM 117
>gi|219852935|ref|YP_002467367.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
gi|219547194|gb|ACL17644.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
Length = 512
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 18/110 (16%)
Query: 29 FSG----CNLWSGREQDRLSA----------QCRF-CDTDFVGIQGTKG-GRYNVDQLAD 72
G C G SA +C CD F + + D++
Sbjct: 69 LQGEPDTCPQNCGLCSGHHSATLLANIDVTNRCNLNCDFCFANARACGFIYEPDFDEIVG 128
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGF-EIAVETNG 120
+++ +GGEP ++ D+P LI+ GF ++ + +NG
Sbjct: 129 MMKNLRNERPVPPPAVQFSGGEPTMRDDLPDLIREAKALGFSQVQIASNG 178
>gi|303243581|ref|ZP_07329923.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
gi|302486142|gb|EFL49064.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
Length = 466
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C+ C + N ++ I+ I +
Sbjct: 123 CNL-----------RCKHC---YANAGKPLEDELNTEEALKTID---ILANSGVVAIAFS 165
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
GGEPL++ D+ LI ++++ +NGT+
Sbjct: 166 GGEPLMRKDLFELIDRAKDYNMQVSIASNGTM 197
>gi|261368541|ref|ZP_05981424.1| glutamate 5-kinase [Subdoligranulum variabile DSM 15176]
gi|282569424|gb|EFB74959.1| glutamate 5-kinase [Subdoligranulum variabile DSM 15176]
Length = 274
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL C FC + G + + L EE +
Sbjct: 68 FGCNLH-----------CPFCQNAGIAAAGAESPTRD-CTPRQLAEEALRLRPRGNIGVA 115
Query: 90 LTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK----- 142
T EPL+ + + + + G + TNGT+E + + DLK
Sbjct: 116 YTYNEPLVGYEFVRDCAEEVRRAGLCNVLVTNGTLEEQPWRALLPLLDAVNIDLKGFTEG 175
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
L + ++ + P + EE L+ P
Sbjct: 176 WYRRLGGDLETVKRSIVLAASCCHPEVTTLVVPGENDSEEEMRALSAWLASVRPD 230
>gi|222528909|ref|YP_002572791.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222455756|gb|ACM60018.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 361
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 17/102 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+ C +V+++ +IE+ + E L
Sbjct: 25 CNL-----------ACKHCYVANKNFDYQS--ELSVNEIKLIIEQLY---EAGCLDLYLN 68
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
GGEP L + + + + +G I+V TNG + I +
Sbjct: 69 GGEPFLNENILEICEFAHNKGLRISVSTNGITIDEEIIKILS 110
>gi|126649567|ref|ZP_01721808.1| hypothetical protein BB14905_06503 [Bacillus sp. B14905]
gi|126593892|gb|EAZ87815.1| hypothetical protein BB14905_06503 [Bacillus sp. B14905]
Length = 291
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC G V+Q +++E + +
Sbjct: 15 CNL-----------ACSFC-----PPTERAKGLIKVEQFNKILDEIRPHTKYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ A + +GF++ + TNG
Sbjct: 57 -GEPLLHPRIDQLLDAAHAKGFKVNITTNG 85
>gi|307264804|ref|ZP_07546366.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920062|gb|EFN50274.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
Length = 342
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 40/154 (25%), Gaps = 15/154 (9%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
RF N Q + +C FC G K ++ D + K
Sbjct: 98 RFG--NTACVSTQVGCNMRCSFC----ASAIGGKVRDLKASEMIDQVIAIDGDYGKISNI 151
Query: 88 CVLTGGEPLLQVDVPLIQALNKR--------GFEIAVETNGTIEPPQGIDWICVSPKAGC 139
++ GEP D + G I + T G + +
Sbjct: 152 VLMGSGEPFDNYDEVMKFIKIVNNPQGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSI 211
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
L EL+ +N + ++ +
Sbjct: 212 SLHAPN-DELRTQLMPINKAYPLEELMKACKYYV 244
>gi|167768744|ref|ZP_02440797.1| hypothetical protein ANACOL_00061 [Anaerotruncus colihominis DSM
17241]
gi|167668916|gb|EDS13046.1| hypothetical protein ANACOL_00061 [Anaerotruncus colihominis DSM
17241]
Length = 276
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C FC + + DL+
Sbjct: 70 GCNL-----------RCPFCQNYAISMADGMHAGAQYIPPEDLVRRAGEYEPAGNIGLAF 118
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
T EP++ + + +RGF + TNG I
Sbjct: 119 TYNEPVVGYEYVRDCARLAARRGFHTVLATNGYICEQP 156
>gi|91203746|emb|CAJ71399.1| similar to molybdenum cofactor biosynthesis protein A [Candidatus
Kuenenia stuttgartiensis]
Length = 355
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 56/170 (32%), Gaps = 27/170 (15%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-VDV 101
+ +C +C DF+ Q + D L D + E G K Y GEPLL
Sbjct: 40 CNHRCTYCALDFMEYQP---RFLDKDVLNDRLSEMASLGLKSIMYA--GEGEPLLHRDIG 94
Query: 102 PLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPK-----AGCDLKIKGGQEL 149
+I K G ++A+ TNG + I WI VS + L
Sbjct: 95 EIINHTKKVGIDVAITTNGVLLKEGLVGSTLENITWIKVSINGATRETYAKIHKTSPDNL 154
Query: 150 KLVFPQVNVSPENYIGFDFE-----RFSLQPMDGPFLEENTNLAISYCFQ 194
V V+ + + ++ + L P + E L Y
Sbjct: 155 DRVIENVSYAVKVREDKGYKCALGMQLILLPENWHEAE----LLAQYAKD 200
>gi|325279342|ref|YP_004251884.1| Radical SAM domain-containing protein [Odoribacter splanchnicus DSM
20712]
gi|324311151|gb|ADY31704.1| Radical SAM domain protein [Odoribacter splanchnicus DSM 20712]
Length = 355
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 14/90 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL A + + ++ + + + T
Sbjct: 40 CNLACRHCGSDCKAI-------------SGQPDMPKEDFLKALDNITPQVDPHRVFIIFT 86
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
GGEPL++ +A +R + + TNG
Sbjct: 87 GGEPLMRKDLEECGRACYRREYPWGLVTNG 116
>gi|289548181|ref|YP_003473169.1| molybdenum cofactor biosynthesis protein A [Thermocrinis albus DSM
14484]
gi|289181798|gb|ADC89042.1| molybdenum cofactor biosynthesis protein A [Thermocrinis albus DSM
14484]
Length = 332
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQL---ADLIEEQWITGEKEGRYCVLTGGEPLL 97
DR + +C FC G + + +++ ++ ++ R +TGGEPLL
Sbjct: 19 DRCNFRCSFC-----MPDGHQYEFFPKEEILTFEEITRVVKVSKSLGVRKVRITGGEPLL 73
Query: 98 QVDVPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
+ D+ + ++ E +++ TNG + + K E+
Sbjct: 74 RRDIEKLISMISPFVEDVSLTTNGFLLKEKASSLKEAGLKRVTVSFHSLRDEV 126
>gi|222084654|ref|YP_002543183.1| coproporphyrinogen III oxidase protein [Agrobacterium radiobacter
K84]
gi|221722102|gb|ACM25258.1| coproporphyrinogen III oxidase protein [Agrobacterium radiobacter
K84]
Length = 392
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 56/184 (30%), Gaps = 26/184 (14%)
Query: 43 LSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-- 99
+A+C +CD V Q R+ L ++ + I G K L GG P L
Sbjct: 25 CAAKCPYCDFNSHVRHQPVDQERFTAAFLKEMASMRAIGGPKTVTSIFLGGGTPSLMKPE 84
Query: 100 ------DVPLIQALNKRGFEIAVETN----------GTIEPPQGIDWICVSPKAGCDLKI 143
D G EI +E N G + V DLK
Sbjct: 85 TVGAVLDGIAKHWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVSMGVQALNDRDLKF 144
Query: 144 -KGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP-FLEENTNLAISYCFQNPKWRLS 201
+ + ++ + + F+ +P E AISY + LS
Sbjct: 145 LGRLHNVADALKAIKLARDIFPRMSFDLIYARPNQTVEEWERELKEAISYAVDH----LS 200
Query: 202 V-QT 204
+ Q
Sbjct: 201 LYQL 204
>gi|56962668|ref|YP_174394.1| molybdenum cofactor biosynthesis protein A [Bacillus clausii
KSM-K16]
gi|56908906|dbj|BAD63433.1| molybdenum cofactor biosynthesis protein A [Bacillus clausii
KSM-K16]
Length = 338
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 41 DRLSAQCRFC--------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
DR + +C +C D + + +VD++ E+ G K+ R +TG
Sbjct: 23 DRCNFRCSYCMPAEVFGPD--HAFMD--ESELLSVDEIVRTAEQFVQLGVKKIR---ITG 75
Query: 93 GEPLLQVDVPL--IQALNKRGFE-IAVETNGTI 122
GEPLL+ +VP + G E +A+ TNG +
Sbjct: 76 GEPLLRKEVPHLIGRLHAIEGLEDLALTTNGVM 108
>gi|325262367|ref|ZP_08129104.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
sp. D5]
gi|324032199|gb|EGB93477.1| putative pyruvate formate-lyase 1 activating enzyme [Clostridium
sp. D5]
Length = 314
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 8/146 (5%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE--IAVETN 119
G Y VD+L I + E G +GGE L+Q A R + +A+ET
Sbjct: 106 GQDYTVDELFRRIYQDRFYFEHSGGGVTFSGGETLMQPRFLHAIAKKCREYHINVAIETC 165
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG---FDFERFSLQ-P 175
G + + D+K + + Q N + + ++ P
Sbjct: 166 GCGDYDSFAPCLDYIDFIYFDIKHMDNGMHEEITGQPNAAILENLKRISAHGNEICVRTP 225
Query: 176 M--DGPFLEENTNLAISYCFQNPKWR 199
+ +EN + P R
Sbjct: 226 VVPGWNDSKENIRDTAQFISTLPSVR 251
>gi|256752725|ref|ZP_05493574.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748400|gb|EEU61455.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
ethanolicus CCSD1]
Length = 317
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C GI + + ++++ I+ E + TGGEPL++
Sbjct: 18 DRCNLRCIYC-MPEEGIPKKDHNE--ILRNEEILKIIRISAELGIKKVRFTGGEPLVRKG 74
Query: 101 VP--LIQALNKRGFE-IAVETNGTI 122
+ + + +G E IA+ TNGT+
Sbjct: 75 IENIIYETSKIKGIEDIALTTNGTM 99
>gi|241760150|ref|ZP_04758248.1| pyruvate formate-lyase 1-activating enzyme [Neisseria flavescens
SK114]
gi|241319604|gb|EER56034.1| pyruvate formate-lyase 1-activating enzyme [Neisseria flavescens
SK114]
Length = 289
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 20/154 (12%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
GC +C +C + +V + + G
Sbjct: 68 LQGC-----------LMRCLYCHNRDTWDLHTEQAQELDVATVMKQVMTYRHYLRATGGG 116
Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
TGGEPLLQ + A + +++NG D I +L +
Sbjct: 117 VTATGGEPLLQYEFVRDWFTACREHDIHTCLDSNG---YALHYDSILDDLLDHTNLVMLD 173
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL---QPM 176
+++ +V V N F R+ QPM
Sbjct: 174 LKQIDPEIHKVLVGIPNTKTLKFARYLAERNQPM 207
>gi|228947216|ref|ZP_04109510.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228812463|gb|EEM58790.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
Length = 148
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF +GC +C C G V+++
Sbjct: 10 VDGEGLRT---VVF--LAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 52
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 53 EI------ASNPLTDVTFSGGDPFFQ 72
>gi|160879625|ref|YP_001558593.1| molybdenum cofactor biosynthesis protein A [Clostridium
phytofermentans ISDg]
gi|160428291|gb|ABX41854.1| molybdenum cofactor biosynthesis protein A [Clostridium
phytofermentans ISDg]
Length = 332
Score = 37.2 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 23/167 (13%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C + K ++ +++ R +TGGEP+++ D
Sbjct: 18 DRCNLRCTYC----MPEDVEKLEHESILTYEEILRICKSASSLGIRKIKITGGEPMVRKD 73
Query: 101 VPLIQALNKR--GFE-IAVETNGTIEPPQGIDW-------ICVS---PKAGCDLKIKGGQ 147
+ A K G E + + TNG + + + VS KI
Sbjct: 74 AVKLMANIKAIPGIEFVTLTTNGVLLEEHVEELAKIPLDGVNVSLDTLNTDTFKKITRRD 133
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT---NLAISY 191
E V+ + E I P G EE LA+ Y
Sbjct: 134 EFLKVWNGIQKLIEAGIPTKINCV---PQKGVNEEELMDIAELAVKY 177
>gi|170289997|ref|YP_001736813.1| radical SAM domain-containing protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174077|gb|ACB07130.1| Radical SAM domain protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 329
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 19/89 (21%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + + G +++ ++ T
Sbjct: 18 CNLN-----------CPYCYSTHYLRERPLGRE-------EVMRLLREAASSGIKHIDYT 59
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETN 119
GGEPL + +++ G ++ TN
Sbjct: 60 GGEPLTRRDISEILEETADLGISASIFTN 88
>gi|107022977|ref|YP_621304.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia AU 1054]
gi|116686780|ref|YP_840027.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia HI2424]
gi|105893166|gb|ABF76331.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia AU 1054]
gi|116652495|gb|ABK13134.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia HI2424]
Length = 374
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN G R S D+ + + R + QL + G ++ R +T
Sbjct: 52 CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101
Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
GGEPLL+ ++ + + EIA+ TNG+ G+ + VS A
Sbjct: 102 GGEPLLRRNLEALIERLAALTTVDGKPVEIALTTNGSLLAAKARALRDAGLSRVTVSLDA 161
Query: 138 GCDLKIKGGQELKLVFPQV 156
D + + + +V
Sbjct: 162 LDDAVFRRMSDADVPVARV 180
>gi|325996049|gb|ADZ51454.1| Molybdenum cofactor biosynthesis protein [Helicobacter pylori 2018]
gi|325997644|gb|ADZ49852.1| Molybdenum cofactor biosynthesis protein A [Helicobacter pylori
2017]
Length = 293
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 22/148 (14%)
Query: 70 LADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVE--TNGT----- 121
L +++E I ++ + +TGGEPLL+ I L+ E+A+ TNG
Sbjct: 17 LDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTNGFLLKKM 76
Query: 122 --IEPPQGIDWICV---SPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPM 176
G+ + V S K+ LKI LK + S + + M
Sbjct: 77 VKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALKNALEGIEESLKVGLKLKLNTVV---M 133
Query: 177 DGPFLEENTNLAISYCFQNPKWRLSVQT 204
G +E L + Y S+Q
Sbjct: 134 KGVNDDEILEL-LEYAKNR-----SIQI 155
>gi|229031257|ref|ZP_04187263.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH1271]
gi|228730015|gb|EEL80989.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus AH1271]
Length = 147
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC C + + D
Sbjct: 9 VDGEGLRT---VVF--FAGCPHRC--------FGCH-------NPKSWNICNGTEMTVED 48
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
+++E +GG+P Q
Sbjct: 49 IVKEI---ASNPLTDVTFSGGDPFFQ 71
>gi|15897297|ref|NP_341902.1| molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus
solfataricus P2]
gi|284174549|ref|ZP_06388518.1| molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus
solfataricus 98/2]
gi|24212003|sp|Q980F0|MOAA_SULSO RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|13813506|gb|AAK40692.1| Molybdenum cofactor biosynthesis protein A (moaA) [Sulfolobus
solfataricus P2]
gi|261601970|gb|ACX91573.1| molybdenum cofactor biosynthesis protein A [Sulfolobus solfataricus
98/2]
Length = 308
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP-LLQVDV 101
+ +C FC ++G +G Y + D++ + + LTGGEP L + V
Sbjct: 20 CNFECFFCH-----MEGEEGDNY-LLSKEDILLVAKVARKFGINSVKLTGGEPTLRRDLV 73
Query: 102 PLIQALNKRGFE-IAVETNGT 121
+++ L + G+E +++ TNG
Sbjct: 74 EIVRGLKQLGYEDVSMTTNGF 94
>gi|148263076|ref|YP_001229782.1| radical SAM domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146396576|gb|ABQ25209.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
Length = 458
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 20/106 (18%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G +R + C +C F + + +A+ +
Sbjct: 79 GCPFDCGICAGHRQQSCTVLIEVTERCNLACPYC---FAAAGRQEVHDPPLAVIAERL-R 134
Query: 77 QWITGEKEGRYCVLTGGEPLLQVDVP-LIQALNKRGFE-IAVETNG 120
+ L+GGEP ++ D+P +I + GF I + +NG
Sbjct: 135 AAMQASGPHNIVQLSGGEPTVRDDLPAIITLGRELGFPFIQLNSNG 180
>gi|312128061|ref|YP_003992935.1| molybdenum cofactor biosynthesis protein a [Caldicellulosiruptor
hydrothermalis 108]
gi|311778080|gb|ADQ07566.1| molybdenum cofactor biosynthesis protein A [Caldicellulosiruptor
hydrothermalis 108]
Length = 308
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + C +C T + + + + + +++ +I G ++ R +TGGEP L+ D
Sbjct: 18 DRCNFFCMYCRTKDLYYE--RIDQLSKEEIFRIISAFKKLGIQKLR---ITGGEPFLRDD 72
Query: 101 V-PLIQALNKRGFE-IAVETNGTIEPPQGIDWICVSPKA 137
+ +I+ + G E I + TNG ++ + I K+
Sbjct: 73 IFEIIEFAHSIGIENINITTNGWLDTEKIKKVIKSPLKS 111
>gi|76809653|ref|YP_334300.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1710b]
gi|76579106|gb|ABA48581.1| molybdenum cofactor biosynthesis protein A [Burkholderia
pseudomallei 1710b]
Length = 370
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRTVFGKDYPFLPHSALLTLEEIERLARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKG 145
++ + R +I + TNG++ G+ + VS A D K
Sbjct: 105 NLEFLIERLANMTTVDGRPLDITLTTNGSLLMRKAKSLRDAGLSRVTVSLDALDDTLFKL 164
Query: 146 GQELKLVFPQV 156
V
Sbjct: 165 RDHADFASADV 175
>gi|78060080|ref|YP_366655.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383]
gi|77964630|gb|ABB06011.1| GTP cyclohydrolase subunit MoaA [Burkholderia sp. 383]
Length = 374
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN G R S D+ + + R + QL + G ++ R +T
Sbjct: 52 CNFRCGYCMPRESFGA-----DYAFMPSS--ERLSFAQLEKIARAFTSLGVEKIR---IT 101
Query: 92 GGEPLLQVDVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKA 137
GGEPLL+ ++ + + EIA+ TNG+ G+ + VS A
Sbjct: 102 GGEPLLRRNLEALIERLAALTTVDGKPVEIALTTNGSLLAAKARTLRDAGLSRVTVSLDA 161
Query: 138 GCDLKIKGGQELKLVFPQV 156
D + + + +V
Sbjct: 162 IDDAVFRRMSDADVPVSRV 180
>gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas
paucivorans DSM 12260]
gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas
paucivorans DSM 12260]
Length = 301
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 10/140 (7%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
G V +L + + ++ G +GGEPL+Q + +++A GF AV+T
Sbjct: 103 GRTLTVPELVAEARKDELFYDQSGGGVTFSGGEPLMQPEFLLEVLEACGAAGFHRAVDTC 162
Query: 120 GTIEPPQ------GIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFS 172
G D K + + V N+ + G R
Sbjct: 163 GFAPEETILRVARHTDLFLYDLKHMDPEAHRLYTGVDNVLILSNLRRLDEAGARLNIRVP 222
Query: 173 LQPMDGPFLEENTNLAISYC 192
L P EN + +
Sbjct: 223 LIPGIN-DSPENLDALGRFV 241
>gi|260887738|ref|ZP_05899001.1| glutamate 5-kinase [Selenomonas sputigena ATCC 35185]
gi|260862525|gb|EEX77025.1| glutamate 5-kinase [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 43/176 (24%), Gaps = 19/176 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL C FC + G + +
Sbjct: 43 FGCNLR-----------CPFCQNYTISMTDGQSETQDVTPAELAALAHDLSRRPHGNIGV 91
Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T EPLL + + L++ G + + TNGTI P + DLK
Sbjct: 92 AFTYNEPLLSYEFIMDVAPLLHEAGLFVVLVTNGTIAPAPLEALLPHVDAMNIDLKGWQP 151
Query: 147 QELKLVFPQVNVSPENYIGF-DFERF----SLQPMDGPFLEENTNLAISYCFQNPK 197
+ + + + P + A+ P
Sbjct: 152 DFYRRLGGDLAAVKHTIARAVKSCHVEVTTLIIPGQNDSASDMEEEALWLASLRPD 207
>gi|251780075|ref|ZP_04822995.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243084390|gb|EES50280.1| glycyl-radical enzyme activating family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 310
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 50/153 (32%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRFCDT--DFVGI 57
G G VF GC L + S C C+T ++ I
Sbjct: 24 DGPGIRT---IVF--LKGCPLSCHWCSNPESQNVNKQLLFNIKNCTGCHKCETICEYDAI 78
Query: 58 QGTK---------------------------GGRYNVDQLADLIEEQWITGEKEGRYCVL 90
G +V ++ D + + + L
Sbjct: 79 DFNNLNRIDRDKCISCGKCAENCYPGALVVSGKEMSVKEVLDELNKDSSQFRRSNGGVTL 138
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
+GGEPLLQ + + +++ + G +ET G
Sbjct: 139 SGGEPLLQHEFALEILKGCKRIGIHTTIETTGY 171
>gi|74317603|ref|YP_315343.1| hypothetical protein Tbd_1585 [Thiobacillus denitrificans ATCC
25259]
gi|74057098|gb|AAZ97538.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 364
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 32/194 (16%), Positives = 60/194 (30%), Gaps = 36/194 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ ++ R DT R D++A E+ +
Sbjct: 85 TAGCNLACKFCQNWDISKSRETDTMV--------DRAMPDEIAAAAEQ------SGCKSV 130
Query: 89 VLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T +P++ + + A + RG + T G I ++ A DLK
Sbjct: 131 AFTYNDPVIFAEYAMDVADACHTRGLKTVAVTAGYITEEPRREFFAKMDAANVDLKGFSD 190
Query: 147 Q---ELKLVFPQVNVSPENYIGFDFERFS-----LQPMDGPFLEENTNLAISYCFQ---- 194
+L Q + Y+ + + + L P E + +
Sbjct: 191 DFYVKLTGARLQPVLDTLTYLKRETDVWFEITTLLIPGQNDSDAEIEASSAWIMRELGPD 250
Query: 195 --------NPKWRL 200
+P W++
Sbjct: 251 VPLHFSAFHPDWKM 264
>gi|296158258|ref|ZP_06841090.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1]
gi|295891594|gb|EFG71380.1| molybdenum cofactor biosynthesis protein A [Burkholderia sp. Ch1-1]
Length = 369
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE I LTGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRSVFDKDYTFLPHSALLSFEEIERLARIFVAHGVEKIRLTGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIDRLAHLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFAVADV 175
>gi|293395384|ref|ZP_06639668.1| pyruvate formate-lyase activating enzyme [Serratia odorifera DSM
4582]
gi|291422068|gb|EFE95313.1| pyruvate formate-lyase activating enzyme [Serratia odorifera DSM
4582]
Length = 299
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 15/160 (9%)
Query: 50 CDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QAL 107
C T + + G + D++ + ++ G L+GGEP + D+ L +A
Sbjct: 92 CPTQALTVCGEMK---SADEIMATVLRDKPFYDRSGGGMTLSGGEPFMTPDLTLRLLKAS 148
Query: 108 NKRGFEIAVETNGTIEP---PQGIDWICV---SPKAGCDLK--IKGGQELKLVFPQVNVS 159
+ AVET + + WI + K K K V +
Sbjct: 149 RQHAIHTAVETCLHVPWKYIEPALPWIDLFLADLKHVDAAKFLHWTEGSAKRVLDNLRRV 208
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWR 199
+ R L P E + + R
Sbjct: 209 ADAGKQITL-RVPLIPGFNADRES-IEAIVDFAANVLHVR 246
>gi|284039241|ref|YP_003389171.1| radical SAM protein [Spirosoma linguale DSM 74]
gi|283818534|gb|ADB40372.1| Radical SAM domain protein [Spirosoma linguale DSM 74]
Length = 327
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN R +A C FCD + + + L + + R T
Sbjct: 10 CN---YYVTYRCNASCGFCD---IWERPSPY-----VTLENARQNLRDLKRLGVRVVDFT 58
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GGEPLL L++ G V TN + P Q + L +E
Sbjct: 59 GGEPLLHRQLPELLREAKALGLITTVTTNALLYPKQAEKLRGLVDMLHFSLDSPIAEEHD 118
>gi|222874685|gb|EEF11816.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ ++ + + + LTGGEPLL+
Sbjct: 48 DRCNFRCSYCMPKEVFDKNYSYLPHGSLLSFEEITRTARLFVQHGVQKIRLTGGEPLLRK 107
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
+V + + ++ + TNG+ G++ + VS D +
Sbjct: 108 NVETLVEQLSALRTPGGQPLDLTLTTNGSLLARKARALKDAGLNRVTVSLDGLDDAVFRS 167
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ V E
Sbjct: 168 MNDVDFPVSDVLAGIEAAQAAGLTNI 193
>gi|160900317|ref|YP_001565899.1| molybdenum cofactor biosynthesis protein A [Delftia acidovorans
SPH-1]
gi|160365901|gb|ABX37514.1| molybdenum cofactor biosynthesis protein A [Delftia acidovorans
SPH-1]
Length = 378
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ ++ + + + LTGGEPLL+
Sbjct: 48 DRCNFRCSYCMPKEVFDKNYSYLPHGSLLSFEEITRTARLFVQHGVQKIRLTGGEPLLRK 107
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
+V + + ++ + TNG+ G++ + VS D +
Sbjct: 108 NVETLVEQLSALRTPGGQPLDLTLTTNGSLLARKARALKDAGLNRVTVSLDGLDDAVFRS 167
Query: 146 GQELKLVFPQVNVSPENYIGFDFERF 171
++ V E
Sbjct: 168 MNDVDFPVSDVLAGIEAAQAAGLTNI 193
>gi|228972163|ref|ZP_04132779.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228787647|gb|EEM35610.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar thuringiensis str. T01001]
Length = 333
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + D IE + LTGGEPLL+
Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLKEELLLTFDEIERLARLFISMGVNKIRLTGGEPLLRK 77
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+P + + G + I + TNG
Sbjct: 78 DLPTLIARLAKLEGLKDIGLTTNGIH 103
>gi|228939284|ref|ZP_04101877.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228978776|ref|ZP_04139147.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
Bt407]
gi|228781037|gb|EEM29244.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
Bt407]
gi|228820479|gb|EEM66511.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 337
Score = 37.2 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + D IE + LTGGEPLL+
Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLKEELLLTFDEIERLARLFISMGVNKIRLTGGEPLLRK 81
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+P + + G + I + TNG
Sbjct: 82 DLPTLIARLAKLEGLKDIGLTTNGIH 107
>gi|301063643|ref|ZP_07204157.1| radical SAM domain protein [delta proteobacterium NaphS2]
gi|300442291|gb|EFK06542.1| radical SAM domain protein [delta proteobacterium NaphS2]
Length = 351
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 22/124 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL C + F G G ++ +I++ G + L
Sbjct: 4 GCNLAC--------RHC-WIQPKFQGS-GHSSPAMDLGLFRLIIDQAKPLGLSVVK---L 50
Query: 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDL 141
TGGEPL+ ++ + + + VETNG ++ VS
Sbjct: 51 TGGEPLIHPRINEMLDYIKREDLRLTVETNGVALTQELAEKMKSCKNPFVSVSIDGVRPE 110
Query: 142 KIKG 145
+
Sbjct: 111 THEW 114
>gi|225569558|ref|ZP_03778583.1| hypothetical protein CLOHYLEM_05652 [Clostridium hylemonae DSM
15053]
gi|225161766|gb|EEG74385.1| hypothetical protein CLOHYLEM_05652 [Clostridium hylemonae DSM
15053]
Length = 288
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 38/137 (27%)
Query: 29 FSGCNLWSGREQDRLSAQ-------------------------------CRFCDTDFVGI 57
GCN+ + + CR C+
Sbjct: 23 LQGCNMKCPWCANPEGMRPEGVIMADSEWLLETVCPHGAVKGTQVDREVCRTCEKKECVT 82
Query: 58 QGTKGGRYN--VDQLADLIEEQWITGE---KEGRYCVLTGGEPLLQVDV--PLIQALNKR 110
+ G Y ++ + + + GE +G TGGE LQ D ++ L +
Sbjct: 83 EHKTKGMYLSYEEETPEEVFREACAGELMFYDGGGVTFTGGEATLQYDELEKALRMLKEY 142
Query: 111 GFEIAVETNGTIEPPQG 127
G AVETNGT G
Sbjct: 143 GINTAVETNGTHPALAG 159
>gi|291532371|emb|CBL05484.1| Pyruvate-formate lyase-activating enzyme [Megamonas hypermegale
ART12/1]
Length = 136
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 24/108 (22%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG R +F GC C C G + D L
Sbjct: 15 VDGEGF---RFTIF--TQGC-----------YHNCPQCHNPQT-HDVNGGHEVDTDDLLS 57
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
I E + +GGEP LQ L + ++KRG I T
Sbjct: 58 QICENPLLNG-----VTFSGGEPFLQAKPLAQLAKEVHKRGLNITTFT 100
>gi|326202884|ref|ZP_08192751.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
gi|325986961|gb|EGD47790.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
Length = 289
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 28/132 (21%)
Query: 32 CNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
CNL C FC D+ G + ++++ +I++ E + +
Sbjct: 15 CNLK-----------CSFCPDS------GREPAFMDIEEFTHIIQQVEPFCEYIYLHIM- 56
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC------VSPKAGCDLKI 143
GEPLL + ++ ++ + TNGT+ G + VS
Sbjct: 57 --GEPLLNPKLESFLKICYDNLIKVNITTNGTLLNRCGELLLDSKALRKVSISLHSFEAN 114
Query: 144 KGGQELKLVFPQ 155
+G + L
Sbjct: 115 EGNELLDNYINN 126
>gi|153873319|ref|ZP_02001940.1| radical SAM family protein [Beggiatoa sp. PS]
gi|152070216|gb|EDN68061.1| radical SAM family protein [Beggiatoa sp. PS]
Length = 453
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G D C C T + T G + ++ + + +
Sbjct: 80 GCPYDCGLCPDHEQHSCVTLVEVTEQCNLTCPTCYANSSPTNGRHRTLAEIERMFD-IVV 138
Query: 80 TGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNG 120
E + ++GGEP + D ++ ++ I V TNG
Sbjct: 139 ANEGQPDVVQISGGEPTIHPDFFQILDLAKQKPIRHIMVNTNG 181
>gi|163119675|ref|YP_080904.2| iron-binding, putative oxidoreductase [Bacillus licheniformis
ATCC 14580]
gi|145903185|gb|AAU25266.2| iron-binding, putative oxidoreductase [Bacillus licheniformis
ATCC 14580]
Length = 154
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF +GC C G +VD++ +
Sbjct: 12 VDGEGLRT---VVF--LAGCPHMCEG-----------CHNKQSW-NINNGFDMSVDEVFE 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I + +GGEPLL
Sbjct: 55 EIM------KNPLTNVTYSGGEPLLH 74
>gi|124486007|ref|YP_001030623.1| hypothetical protein Mlab_1187 [Methanocorpusculum labreanum Z]
gi|124363548|gb|ABN07356.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
Length = 387
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R + C D G + +V + ++ + + +L
Sbjct: 93 CNLHCAGCYARATGMCG--DEKPAGAEP-----MSVPEWENIFLQ---AEGLGISFILLA 142
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ A + + TNG
Sbjct: 143 GGEPLLRRDLIEAAAGHSS-IIFPIFTNG 170
>gi|121604594|ref|YP_981923.1| molybdenum cofactor biosynthesis protein A [Polaromonas
naphthalenivorans CJ2]
gi|120593563|gb|ABM37002.1| GTP cyclohydrolase subunit MoaA [Polaromonas naphthalenivorans CJ2]
Length = 376
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
DR + +C +C D ++ + + ++ ++ I LTGGE
Sbjct: 51 DRCNFRCNYCMPSEVFDKNYAFLPQS-----SLLSFEEITRLATIFVAHGVEKIRLTGGE 105
Query: 95 PLLQVDVPLIQALNKR-------GFEIAVETNGT-------IEPPQGIDWICVSPKAGCD 140
PLL+ ++ ++ + R +I + TNG+ G+ + VS A D
Sbjct: 106 PLLRKNLEVLIEMLARLQTPAGKPLDITLTTNGSLLAKKARSLKDAGLQRVTVSLDALDD 165
Query: 141 LKIKGGQELKLVFPQV 156
+G ++ V
Sbjct: 166 AIFRGMNDVDFPVADV 181
>gi|320101319|ref|YP_004176911.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfurococcus mucosus DSM 2162]
gi|319753671|gb|ADV65429.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfurococcus mucosus DSM 2162]
Length = 248
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL C FC T D + + + + Y
Sbjct: 26 LCGCNLK-----------CPFC---HNWRLATGDREVCRPLDVDRLLSEVDSSKGFIDYL 71
Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETN 119
+TGGEPLLQ L + + + G ++V TN
Sbjct: 72 HVTGGEPLLQYRGLAGLFRRVKEIGVPVSVNTN 104
>gi|94971342|ref|YP_593390.1| GTP cyclohydrolase subunit MoaA [Candidatus Koribacter versatilis
Ellin345]
gi|94553392|gb|ABF43316.1| GTP cyclohydrolase subunit MoaA [Candidatus Koribacter versatilis
Ellin345]
Length = 338
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLL-QV 99
DR + +C +C G G + + D + + LTGGEPLL +
Sbjct: 29 DRCNYRCVYC------RSGNNGPSFAELRFQDYVRIARVFVSLGITKIRLTGGEPLLRRD 82
Query: 100 DVPLIQALNK------RGFEIAVETNGT 121
+ L++ L +IA+ TNG
Sbjct: 83 LLELVRELRALKTLDGEPLDIAITTNGH 110
>gi|48478258|ref|YP_023964.1| molybdenum cofactor biosynthesis protein A [Picrophilus torridus
DSM 9790]
gi|48430906|gb|AAT43771.1| molybdenum cofactor biosynthesis protein A [Picrophilus torridus
DSM 9790]
Length = 611
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 18/104 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G +R C +C F + ++DQ+ ++
Sbjct: 133 CPTHCGLCVKHKSHTGLGNIVVTNRCDLSCWYC--FFYAKENEPIYEPSLDQIRMMLRRM 190
Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETN 119
+TGGEP ++ D + +I+ + G+ + + TN
Sbjct: 191 RNEKPVGANAVQITGGEPTMRDDILEVIKIAREEGYDHVQLNTN 234
>gi|28210648|ref|NP_781592.1| benzylsuccinate synthase activating enzyme [Clostridium tetani E88]
gi|28203086|gb|AAO35529.1| pyruvate formate-lyase [Clostridium tetani E88]
Length = 310
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G V+++ +++ I L+GGEPL+Q++ + L++A G+ A+ET
Sbjct: 110 GEEMTVEEVVKELKKDAIHFRNSNGGITLSGGEPLMQLEFTLELLKACKTMGWHTAMETT 169
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
+ + A D+KI + K N
Sbjct: 170 AYTNKDIINNVMPYLDLALLDIKILNSSKHKEYIGGDNEIILENAK 215
>gi|308049747|ref|YP_003913313.1| Radical SAM domain protein [Ferrimonas balearica DSM 9799]
gi|307631937|gb|ADN76239.1| Radical SAM domain protein [Ferrimonas balearica DSM 9799]
Length = 304
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 5 SIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-CRFC 50
+ I F + G G VF F GCN+ + + C C
Sbjct: 21 PVNRILPFSCVDGPGSRM---VVF--FQGCNMNCPSCHNPHTIGHCNHC 64
>gi|312880166|ref|ZP_07739966.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
gi|310783457|gb|EFQ23855.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
Length = 326
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQ-GTKGGRY-NVDQLADLIEEQWITGEKEGRYC 88
GCNL FC D + G + ++L L E
Sbjct: 79 GCNLDC-----------PFCQNDSLSHPLGWIASPFLEPEELVALAEAGGEGA------V 121
Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
T EPL+ + + L++RG + TNGTIEP + + A DLK
Sbjct: 122 AFTYNEPLIHPEYLLEAGRQLHRRGIRVVWITNGTIEPEPLEEILGKVDAANVDLK 177
>gi|55378148|ref|YP_135998.1| heme biosynthesis protein [Haloarcula marismortui ATCC 43049]
gi|55230873|gb|AAV46292.1| heme biosynthesis protein [Haloarcula marismortui ATCC 43049]
Length = 411
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 34 LWSGREQDRLSAQCR-FCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
+W+ +Q C +CD + G + + L+++ + + +
Sbjct: 42 VWNVTKQ------CNLYCDHCYAAADTEIADGELSTAEGKALLDDL---ADYGAPVVLFS 92
Query: 92 GGEPLL-QVDVPLIQALNKRGFEIAVETNG 120
GGEPL+ Q L+ N+ G + TNG
Sbjct: 93 GGEPLVRQDLEELVAYANEVGVRPVLSTNG 122
>gi|297624979|ref|YP_003706413.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix
DSM 17093]
gi|297166159|gb|ADI15870.1| molybdenum cofactor biosynthesis protein A [Truepera radiovictrix
DSM 17093]
Length = 336
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + +C +CD G +V +A ++E G + R+ TGGEPLL+ ++
Sbjct: 33 RCNFRCTYCD-PLGLGHADPVGTLSVQDVAHVLEAAVGLGMRSVRF---TGGEPLLRREL 88
Query: 102 PLIQAL-NKRGFE-IAVETN 119
P + A + G E +A+ TN
Sbjct: 89 PEMIACAKRLGVEDVAITTN 108
>gi|204930301|ref|ZP_03221278.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|204320705|gb|EDZ05907.1| pyruvate formate-lyase 2-activating enzyme [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
Length = 292
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 30/171 (17%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGR-----------EQDRLSAQCRFC-- 50
IF +L G+G VF F GC E R +C C
Sbjct: 24 IFNIQRYSLNDGQGIRT---VVF--FKGCPHTCPWCANPESISPRIETVRRENKCLSCTP 78
Query: 51 -----DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPL 103
D G G +D+L + + I G L+GGE L+Q
Sbjct: 79 CLRDADECPSGAFERIGRDITLDELEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRF 138
Query: 104 IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFP 154
+Q L + G A+ET G + + + DLKI + + V
Sbjct: 139 LQRLRRWGVPCAIETAGDTSASRLLPLARACDEVLFDLKIMDAERAREVIN 189
>gi|15643588|ref|NP_228634.1| astB/chuR-related protein [Thermotoga maritima MSB8]
gi|4981357|gb|AAD35907.1|AE001750_1 astB/chuR-related protein [Thermotoga maritima MSB8]
Length = 323
Score = 37.2 bits (85), Expect = 1.6, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-D 100
R + +C+ C + + +++ +LI + G + GGEPLL
Sbjct: 15 RCNFRCKHC---YCEAGKPHLEELSFEEIKELILDMKELGTWA---LDIVGGEPLLHPQI 68
Query: 101 VPLIQALNKRGFEIAVETNG 120
+ ++ + G + + TNG
Sbjct: 69 LDILAFGKEVGQRLMINTNG 88
>gi|308273606|emb|CBX30208.1| hypothetical protein N47_D30170 [uncultured Desulfobacterium sp.]
Length = 341
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
KG Y ++L +++ + + +GGEP +++ L RG A++T
Sbjct: 124 KGRYYEPEELVEILLQDVRFFDHSKGGVTFSGGEPTQHCLYLGRVLRKLKDRGIHTALQT 183
Query: 119 NGTIEP 124
G +
Sbjct: 184 CGFFQW 189
>gi|283852323|ref|ZP_06369594.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio sp. FW1012B]
gi|283572280|gb|EFC20269.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfovibrio sp. FW1012B]
Length = 232
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 22/121 (18%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GC C +C + + + R LA L + + V
Sbjct: 28 QGCP-----------WGCPYCHNEPLREITDRTERDGASVLAWLAGRRGLLDA-----VV 71
Query: 90 LTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTIEPPQG-----IDWICVSPKAGCDLKI 143
+GGEP L + ++ A+ GF++ + T G DW+ + KA
Sbjct: 72 FSGGEPTLQEGLGGMLGAVRDLGFKVGLHTTGMFPQALERVLPLCDWVGLDIKAPRADYA 131
Query: 144 K 144
+
Sbjct: 132 R 132
>gi|255525534|ref|ZP_05392470.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
gi|255510802|gb|EET87106.1| glycyl-radical enzyme activating protein family [Clostridium
carboxidivorans P7]
Length = 312
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 46/160 (28%), Gaps = 58/160 (36%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------CRF----------C-- 50
G G +VF F+GC L + S C++ C
Sbjct: 17 DGPGCRT---SVF--FTGCPLQCKWCANPESWIKKKHIMVAENVCKWKNGCRACINVCSH 71
Query: 51 DTDFVGIQGTKG---------------------------GRYNVDQLADLIEEQWITGEK 83
D+ G G Y VD+L +++ +
Sbjct: 72 DSIKFSEDGKLGISWDTCEECETFDCVNICPNNALKQCVKEYTVDELMTILKRDF-NNWG 130
Query: 84 EGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
TGG+PL+ V +++ A+ET+G
Sbjct: 131 SDGGVTFTGGDPLMHHEFLVEVLKKCYDSQIHKAIETSGY 170
>gi|87307927|ref|ZP_01090070.1| MoaA/NifB/PqqE family protein [Blastopirellula marina DSM 3645]
gi|87289541|gb|EAQ81432.1| MoaA/NifB/PqqE family protein [Blastopirellula marina DSM 3645]
Length = 490
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 31 GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC L G + C C + G G G +V Q I+
Sbjct: 72 GCPLDCGLCTEHEQHSCIGLLEITSSCNLECPMCYAGS-GPGGKHLSVAQCQAAIDRLVE 130
Query: 80 TGEKEGRYCVLTGGEPLLQVDVPL---IQALNKRGFEIAVETNG 120
E L+GGEP + D + + + TNG
Sbjct: 131 V-EGRPEVLQLSGGEPTIHPDFETILAYALSQPIDY-VMINTNG 172
>gi|110639435|ref|YP_679644.1| radical SAM family Fe-S oxidoreductase [Cytophaga hutchinsonii ATCC
33406]
gi|110282116|gb|ABG60302.1| Fe-S oxidoreductase, radical SAM superfamily [Cytophaga
hutchinsonii ATCC 33406]
Length = 326
Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVL 90
CN R +A C FCD + + + +E+ + +
Sbjct: 10 CN---YYVTYRCNATCGFCD---------IWEKPSPYVTPEAVEQNMRDLKKLGVKVIDF 57
Query: 91 TGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
TGGEPLL L++ K G + TN + P + L E
Sbjct: 58 TGGEPLLHREMDTLLRIAKKYGMITTLTTNALLYPKWAERLKGLIDMLHFSLDSPDKAEH 117
Query: 150 KLV 152
+
Sbjct: 118 DTL 120
>gi|308374965|ref|ZP_07442243.2| transferase [Mycobacterium tuberculosis SUMu007]
gi|308376208|ref|ZP_07438032.2| transferase [Mycobacterium tuberculosis SUMu008]
gi|308347873|gb|EFP36724.1| transferase [Mycobacterium tuberculosis SUMu007]
gi|308351861|gb|EFP40712.1| transferase [Mycobacterium tuberculosis SUMu008]
Length = 727
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 4 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 63
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 64 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 123
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 124 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 180
>gi|307086525|ref|ZP_07495638.1| putative radical SAM domain protein [Mycobacterium tuberculosis
SUMu012]
gi|308364116|gb|EFP52967.1| putative radical SAM domain protein [Mycobacterium tuberculosis
SUMu012]
Length = 571
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 65 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 124
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 125 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 184
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 185 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 241
>gi|306795393|ref|ZP_07433695.1| transferase [Mycobacterium tuberculosis SUMu006]
gi|308344074|gb|EFP32925.1| transferase [Mycobacterium tuberculosis SUMu006]
Length = 776
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 53 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 112
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 113 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 172
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 173 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 229
>gi|215432709|ref|ZP_03430628.1| putative transferase [Mycobacterium tuberculosis EAS054]
gi|260184650|ref|ZP_05762124.1| putative transferase [Mycobacterium tuberculosis CPHL_A]
gi|260198775|ref|ZP_05766266.1| putative transferase [Mycobacterium tuberculosis T46]
gi|260202931|ref|ZP_05770422.1| putative transferase [Mycobacterium tuberculosis K85]
gi|289441165|ref|ZP_06430909.1| transferase [Mycobacterium tuberculosis T46]
gi|289445328|ref|ZP_06435072.1| transferase [Mycobacterium tuberculosis CPHL_A]
gi|289572380|ref|ZP_06452607.1| transferase [Mycobacterium tuberculosis K85]
gi|289755860|ref|ZP_06515238.1| transferase [Mycobacterium tuberculosis EAS054]
gi|289414084|gb|EFD11324.1| transferase [Mycobacterium tuberculosis T46]
gi|289418286|gb|EFD15487.1| transferase [Mycobacterium tuberculosis CPHL_A]
gi|289536811|gb|EFD41389.1| transferase [Mycobacterium tuberculosis K85]
gi|289696447|gb|EFD63876.1| transferase [Mycobacterium tuberculosis EAS054]
Length = 776
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 53 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 112
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 113 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 172
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 173 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 229
>gi|215405783|ref|ZP_03417964.1| putative transferase [Mycobacterium tuberculosis 02_1987]
gi|215413658|ref|ZP_03422326.1| putative transferase [Mycobacterium tuberculosis 94_M4241A]
gi|289747569|ref|ZP_06506947.1| transferase [Mycobacterium tuberculosis 02_1987]
gi|294995359|ref|ZP_06801050.1| putative transferase [Mycobacterium tuberculosis 210]
gi|298527206|ref|ZP_07014615.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis
94_M4241A]
gi|289688097|gb|EFD55585.1| transferase [Mycobacterium tuberculosis 02_1987]
gi|298497000|gb|EFI32294.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis
94_M4241A]
gi|326905568|gb|EGE52501.1| transferase [Mycobacterium tuberculosis W-148]
Length = 776
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 53 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 112
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 113 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 172
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 173 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 229
>gi|169825862|ref|YP_001696020.1| hypothetical protein Bsph_0261 [Lysinibacillus sphaericus C3-41]
gi|168990350|gb|ACA37890.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 305
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
CNL C FC T G V+Q +++E + +
Sbjct: 29 CNL-----------ACSFCPPTARA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 70
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ A + +GF++ + TNG
Sbjct: 71 --GEPLLHPRIDQLLDAAHAKGFKVNITTNG 99
>gi|167950639|ref|ZP_02537713.1| putative radical activating enzyme [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 61
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 186 NLAISYCFQNPKWRLSVQTHK 206
LA R +Q HK
Sbjct: 32 QLAEWILADRLDVRFQLQLHK 52
>gi|73669299|ref|YP_305314.1| metallo cofactor biosynthesis protein [Methanosarcina barkeri str.
Fusaro]
gi|72396461|gb|AAZ70734.1| metallo cofactor biosynthesis protein [Methanosarcina barkeri str.
Fusaro]
Length = 399
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + D +F T+ G+ +D L + +
Sbjct: 50 CNLKCVHCYAQAK------DIEFENELSTEEGKALIDDL----------ASFGSPVILFS 93
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
GGEP ++ D+P + A ++G + TNG
Sbjct: 94 GGEPTMRKDLPELAAYAREKGMRAVISTNG 123
>gi|15610865|ref|NP_218246.1| transferase [Mycobacterium tuberculosis H37Rv]
gi|15843350|ref|NP_338387.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis CDC1551]
gi|148663595|ref|YP_001285118.1| putative transferase [Mycobacterium tuberculosis H37Ra]
gi|148824934|ref|YP_001289688.1| transferase [Mycobacterium tuberculosis F11]
gi|218755512|ref|ZP_03534308.1| putative transferase [Mycobacterium tuberculosis GM 1503]
gi|254552842|ref|ZP_05143289.1| transferase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|289555994|ref|ZP_06445204.1| transferase [Mycobacterium tuberculosis KZN 605]
gi|289763910|ref|ZP_06523288.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|297636409|ref|ZP_06954189.1| transferase [Mycobacterium tuberculosis KZN 4207]
gi|297733403|ref|ZP_06962521.1| transferase [Mycobacterium tuberculosis KZN R506]
gi|306778088|ref|ZP_07416425.1| transferase [Mycobacterium tuberculosis SUMu001]
gi|306778620|ref|ZP_07416957.1| transferase [Mycobacterium tuberculosis SUMu002]
gi|306786643|ref|ZP_07424965.1| transferase [Mycobacterium tuberculosis SUMu003]
gi|306791328|ref|ZP_07429630.1| transferase [Mycobacterium tuberculosis SUMu005]
gi|306969972|ref|ZP_07482633.1| transferase [Mycobacterium tuberculosis SUMu009]
gi|313660734|ref|ZP_07817614.1| transferase [Mycobacterium tuberculosis KZN V2475]
gi|2960153|emb|CAA18051.1| POSSIBLE TRANSFERASE [Mycobacterium tuberculosis H37Rv]
gi|13883713|gb|AAK48201.1| moaA/nifB/pqqE family protein [Mycobacterium tuberculosis CDC1551]
gi|148507747|gb|ABQ75556.1| putative transferase [Mycobacterium tuberculosis H37Ra]
gi|148723461|gb|ABR08086.1| hypothetical transferase [Mycobacterium tuberculosis F11]
gi|289440626|gb|EFD23119.1| transferase [Mycobacterium tuberculosis KZN 605]
gi|289711416|gb|EFD75432.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|308213614|gb|EFO73013.1| transferase [Mycobacterium tuberculosis SUMu001]
gi|308328347|gb|EFP17198.1| transferase [Mycobacterium tuberculosis SUMu002]
gi|308328750|gb|EFP17601.1| transferase [Mycobacterium tuberculosis SUMu003]
gi|308340085|gb|EFP28936.1| transferase [Mycobacterium tuberculosis SUMu005]
gi|308352525|gb|EFP41376.1| transferase [Mycobacterium tuberculosis SUMu009]
gi|328460503|gb|AEB05926.1| transferase [Mycobacterium tuberculosis KZN 4207]
Length = 776
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 53 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 112
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 113 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 172
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 173 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 229
>gi|253800776|ref|YP_003033777.1| transferase [Mycobacterium tuberculosis KZN 1435]
gi|254233222|ref|ZP_04926548.1| hypothetical protein TBCG_03654 [Mycobacterium tuberculosis C]
gi|308372639|ref|ZP_07429331.2| transferase [Mycobacterium tuberculosis SUMu004]
gi|308379602|ref|ZP_07486866.2| transferase [Mycobacterium tuberculosis SUMu010]
gi|308380789|ref|ZP_07491083.2| transferase [Mycobacterium tuberculosis SUMu011]
gi|124603015|gb|EAY61290.1| hypothetical protein TBCG_03654 [Mycobacterium tuberculosis C]
gi|253322279|gb|ACT26882.1| transferase [Mycobacterium tuberculosis KZN 1435]
gi|308332594|gb|EFP21445.1| transferase [Mycobacterium tuberculosis SUMu004]
gi|308356477|gb|EFP45328.1| transferase [Mycobacterium tuberculosis SUMu010]
gi|308360423|gb|EFP49274.1| transferase [Mycobacterium tuberculosis SUMu011]
gi|323717593|gb|EGB26795.1| transferase [Mycobacterium tuberculosis CDC1551A]
Length = 788
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 65 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 124
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 125 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 184
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 185 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 241
>gi|283788416|ref|YP_003368281.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282951870|emb|CBG91586.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 287
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 42/200 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+ +F GCNL +
Sbjct: 14 FSCVDGPGS---RLVLF--LQGCNLRCKNCHNPWTIGRCNHCAECVAQCPHQALSFSAGK 68
Query: 42 --RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE----- 94
+ +C+ CDT + + + D + Q ++GGE
Sbjct: 69 VSWRADRCQQCDTC-LRMCPQQATPMAQSMRVDEVLHQIRQAAPFIEGITVSGGEATTQL 127
Query: 95 PLLQVDVPLIQALNKR-GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
P + I+A + V++NG + + V DLK + + +
Sbjct: 128 PFIVDLFAAIKADPQLTSLSCLVDSNGLLNETGWQKLLPVCDGVMLDLKAWSSEYHQRLT 187
Query: 154 PQVNVSPENYIGFDFERFSL 173
+ N + I + R L
Sbjct: 188 GRDNAQIKRSILWLAARQKL 207
>gi|215424974|ref|ZP_03422893.1| putative transferase [Mycobacterium tuberculosis T92]
gi|289748248|ref|ZP_06507626.1| hypothetical transferase [Mycobacterium tuberculosis T92]
gi|289688835|gb|EFD56264.1| hypothetical transferase [Mycobacterium tuberculosis T92]
Length = 543
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 65 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 124
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 125 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 184
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 185 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 241
>gi|30021703|ref|NP_833334.1| anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 14579]
gi|29897258|gb|AAP10535.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus ATCC 14579]
Length = 150
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCVGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I + G+P Q
Sbjct: 55 EI------ASNPLTDVTFSSGDPFFQ 74
>gi|303246968|ref|ZP_07333244.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
gi|302491675|gb|EFL51558.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
Length = 374
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 19/101 (18%)
Query: 22 RVAVFCRFSG-CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
R VF +G CNL C +C T V + ++ D
Sbjct: 24 RPTVFIALTGHCNL-----------ACAYCSTRNVRREHRNMDTALARRIVDQCLANDWP 72
Query: 81 GEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFE-IAVETNG 120
Y EP L +V + A G + + TNG
Sbjct: 73 FSFGQTY------EPFLHPEVERVIAHVAAGGQLFSCATNG 107
>gi|254168706|ref|ZP_04875548.1| probable molybdenum cofactor biosynthesis protein A
[Aciduliprofundum boonei T469]
gi|197622332|gb|EDY34905.1| probable molybdenum cofactor biosynthesis protein A
[Aciduliprofundum boonei T469]
Length = 300
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 25/135 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C +G ++ ++ I E + R T
Sbjct: 12 CNLN-----------CFYCH-----REGEWHRHHSEMTPDEIERILKIARELDIRKVKFT 55
Query: 92 GGEPLLQVDVPLIQALNK--RGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+ I + ++++ TNG G+D + VS K
Sbjct: 56 GGEPLCRNDIVEIVLKSAPLMDRDVSLTTNGTLLSKYAYELKEVGLDRVNVSLDTLDPEK 115
Query: 143 IKGGQELKLVFPQVN 157
+ ++ ++
Sbjct: 116 YRRITRKDMLNDAID 130
>gi|153932625|ref|YP_001383439.1| radical SAM domain-containing protein [Clostridium botulinum A str.
ATCC 19397]
gi|153935283|ref|YP_001386986.1| radical SAM domain-containing protein [Clostridium botulinum A str.
Hall]
gi|152928669|gb|ABS34169.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
19397]
gi|152931197|gb|ABS36696.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
Length = 297
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + + ++ ++ D I +Q
Sbjct: 20 CNL-----------ACDFC------PETRRKPQFMSIEIFDKILDQI--KPYTDYIYFHV 60
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GEPLL D+ + K+GF++ + TNGT+ I
Sbjct: 61 KGEPLLHPDIDKFLDLSYKKGFKVNITTNGTLINKAKDKII 101
>gi|31794901|ref|NP_857394.1| transferase [Mycobacterium bovis AF2122/97]
gi|121639645|ref|YP_979869.1| putative transferase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224992141|ref|YP_002646830.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172]
gi|31620499|emb|CAD95942.1| POSSIBLE TRANSFERASE [Mycobacterium bovis AF2122/97]
gi|121495293|emb|CAL73779.1| Possible transferase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224775256|dbj|BAH28062.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172]
Length = 776
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 53 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 112
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + I +
Sbjct: 113 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTIII 172
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 173 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 229
>gi|302670087|ref|YP_003830047.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302394560|gb|ADL33465.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 282
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYC 88
GCNL Q+ + + + GG +LA++ E G
Sbjct: 68 GCNLRCPFCQNHEIS--------YGFGKEYGGGARFITPSELAEIAESYIPQGN---IGV 116
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T EPL+ + + Q +++RG + + +NG + I DLK
Sbjct: 117 AFTYNEPLVGYEYVIDTAQEVHERGLKTVLVSNGCVSQKVAELVIPHIDAMNIDLKGFTD 176
Query: 147 QELKLVFP--QVNVSPENYIGFDFERF----SLQPMDGPFLEENTNLAISY 191
+ V + V + + P E LA
Sbjct: 177 SYYEDVLHGNRHMVMDFIEHAAEVSHVEVTTLIVPGYNDSDAEMEELAGWI 227
>gi|289596878|ref|YP_003483574.1| molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei
T469]
gi|289534665|gb|ADD09012.1| molybdenum cofactor biosynthesis protein A [Aciduliprofundum boonei
T469]
Length = 308
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 25/135 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C +G ++ ++ I E + R T
Sbjct: 20 CNLN-----------CFYCH-----REGEWHRHHSEMTPDEIERILKIARELDIRKVKFT 63
Query: 92 GGEPLLQVDVPLIQALNK--RGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+ I + ++++ TNG G+D + VS K
Sbjct: 64 GGEPLCRNDIVEIVLKSAPLMDRDVSLTTNGTLLSKYAYELKEVGLDRVNVSLDTLDPEK 123
Query: 143 IKGGQELKLVFPQVN 157
+ ++ ++
Sbjct: 124 YRRITRKDMLNDAID 138
>gi|162448131|ref|YP_001621263.1| ribonucleoside-triphosphate reductase activating, anaerobic
[Acholeplasma laidlawii PG-8A]
gi|161986238|gb|ABX81887.1| ribonucleoside-triphosphate reductase activating, anaerobic
[Acholeplasma laidlawii PG-8A]
Length = 172
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
VF GCNL +C C +G + ++ + +
Sbjct: 29 VF--TQGCNL-----------RCPGCHNP-STHALDEGKLIELTEIRKKWKRNPLL---- 70
Query: 85 GRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAV 116
++GGEP LQ + + LI+ ++ G ++ +
Sbjct: 71 -HGITISGGEPFLQPEPVLELIKMAHEDGLDVNI 103
>gi|149914618|ref|ZP_01903148.1| arginyl-tRNA-protein transferase [Roseobacter sp. AzwK-3b]
gi|149811411|gb|EDM71246.1| arginyl-tRNA-protein transferase [Roseobacter sp. AzwK-3b]
Length = 317
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
D++ D +++ R TGGEP + + + +A +RG+E+ + TN
Sbjct: 66 ITADEVLDYLDQ-ITERGWPIREIGFTGGEPFMNPEMISMTRACLERGYEVLILTNAMRP 124
Query: 124 PP 125
Sbjct: 125 MM 126
>gi|13541130|ref|NP_110818.1| heme d1 biosynthesis protein (NirJ-related) [Thermoplasma volcanium
GSS1]
gi|14324517|dbj|BAB59444.1| molybdopterin cofactor biosynthetic protein [Thermoplasma volcanium
GSS1]
Length = 336
Score = 36.8 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + + + I +
Sbjct: 36 CNLRCDM--------CPF----------WRRKDERLLSIDEEIMMMDSLASAGVSFMGFE 77
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ I + R F ++ TNG
Sbjct: 78 GGEPLLRNDLEDILRESHRRFHTSLVTNG 106
>gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
baculatum DSM 4028]
gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
baculatum DSM 4028]
Length = 306
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G ++ V ++ IE++ +GGEPL Q D L+ A AV+T+
Sbjct: 108 GRKWTVLEVMAEIEKETPFFAGNQGGVTFSGGEPLAQPDFLEALLVACKDLDLHRAVDTS 167
Query: 120 GT 121
G
Sbjct: 168 GF 169
>gi|224368537|ref|YP_002602700.1| MoaA1 [Desulfobacterium autotrophicum HRM2]
gi|223691253|gb|ACN14536.1| MoaA1 [Desulfobacterium autotrophicum HRM2]
Length = 329
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 18/161 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
DR + +C +C D + + +++ +++ + +TGGEPL++
Sbjct: 22 DRCNLRCLYCIPDGIFPMLSHEEILTYEEILRIVK---TGSKMGISKVRITGGEPLVRKG 78
Query: 100 -DVPLIQALNKRG-FEIAVETNG-------TIEPPQGIDWICVSPKAGCDLKIK---GGQ 147
L + +G +I++ TNG GI I VS K K
Sbjct: 79 ACDFLSRLSKIKGLLDISLTTNGVLLEKNIEQIKAAGIHRINVSLDTLQPKKYKQITRMN 138
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
K V+ + + + GF + ++ M G +E +LA
Sbjct: 139 MFKRVWDGIMAA--HAAGFSPIKLNVVVMKGINDDEIEDLA 177
>gi|222086226|ref|YP_002544758.1| molybdenum cofactor biosynthesis protein A [Agrobacterium
radiobacter K84]
gi|221723674|gb|ACM26830.1| molybdenum cofactor biosynthesis protein A [Agrobacterium
radiobacter K84]
Length = 355
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 24/166 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR +C +C + T + ++ L +L K R LTGGEPL++ +
Sbjct: 44 DRCDFRCTYC----MSENMTFLPKKDLLTLEELNRLCSAFIAKGVRKIRLTGGEPLVRKN 99
Query: 101 VPLIQALNKRGFEIA--------VETNGTI-------EPPQGIDWICVSPKAGCDLKIKG 145
++ + + G + + TNG+ G+ I VS K +
Sbjct: 100 --IMFLVRELGKRVHTGELEELTLTTNGSQLSRHADELYDCGVRRINVSLDTLDPDKFRA 157
Query: 146 G---QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ V ++ + + + +L+ + + E A
Sbjct: 158 ITRWGDFAKVMEGIDAAQKAGLKIKLNAVALKDFNDAEIPEMLRFA 203
>gi|16082340|ref|NP_394812.1| heme biosynthesis protein (NirJ) related protein [Thermoplasma
acidophilum DSM 1728]
gi|10640699|emb|CAC12477.1| heme biosynthesis protein (NirJ) related protein [Thermoplasma
acidophilum]
Length = 341
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 18/89 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + L + I+ +
Sbjct: 41 CNLRCDM--------CPF----------WRRKDEKLLSLEEEIKMMDSLASAGVSFMGFE 82
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ I + + F ++ TNG
Sbjct: 83 GGEPLLRNDLEDILKESHKRFHTSLVTNG 111
>gi|269468265|gb|EEZ79949.1| coproporphyrinogen III oxidase [uncultured SUP05 cluster bacterium]
Length = 397
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
L +C +CD F +G Y L DL ++ + + G
Sbjct: 28 PLSLYIHYPWCVKKCPYCD--FNSHEGEDRNGYIEALLKDLDKDLKYVQGRSIHSIFIGG 85
Query: 93 GEPLLQVDVPLI--------QALNKRGFEIAVETN 119
G P L L + ++ EI +ETN
Sbjct: 86 GTPSLMSADELHELFTGLKSKLTFEKNIEITLETN 120
>gi|330838041|ref|YP_004412621.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
gi|329745805|gb|AEB99161.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
Length = 289
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 43/176 (24%), Gaps = 19/176 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL C FC + G + +
Sbjct: 82 FGCNLR-----------CPFCQNYTISMTDGQSETQDVTPAELAALAHDLSRRPHGNIGV 130
Query: 89 VLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T EPLL + + L++ G + + TNGTI P + DLK
Sbjct: 131 AFTYNEPLLSYEFIMDVAPLLHEAGLFVVLVTNGTIAPAPLEALLPHVDAMNIDLKGWQP 190
Query: 147 QELKLVFPQVNVSPENYIGF-DFERF----SLQPMDGPFLEENTNLAISYCFQNPK 197
+ + + + P + A+ P
Sbjct: 191 DFYRRLGGDLAAVKHTIARAVKSCHVEVTTLIIPGQNDSASDMEEEALWLASLRPD 246
>gi|148977624|ref|ZP_01814200.1| molybdenum cofactor biosynthesis protein A [Vibrionales bacterium
SWAT-3]
gi|145963139|gb|EDK28407.1| molybdenum cofactor biosynthesis protein A [Vibrionales bacterium
SWAT-3]
Length = 329
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 18/169 (10%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
D + +C +C D G + + + + ++ + +TGGEP L+
Sbjct: 22 DVCNFKCTYCLPD----GYKPSGQKNSSFLSVPEIKRVVKAFADCGTSKIRITGGEPSLR 77
Query: 99 VDVPLIQALNKRG---FEIAVETNGTIEPPQGIDW-------ICVSPKA-GCDLKIKGGQ 147
D P I ++A TNG Q W I VS + + +
Sbjct: 78 KDFPEIIQTVANTPGIKKVATTTNGYRMEKQVGQWRDAGLTHINVSVDSLDPRMFHQITG 137
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
E K + +GF+ + ++ M +E +++ P
Sbjct: 138 ENKFTEVMRGIDKAFEVGFEQVKVNVVLMKDLNSQE-LPAFLNWIKDKP 185
>gi|224025812|ref|ZP_03644178.1| hypothetical protein BACCOPRO_02554 [Bacteroides coprophilus DSM
18228]
gi|224019048|gb|EEF77046.1| hypothetical protein BACCOPRO_02554 [Bacteroides coprophilus DSM
18228]
Length = 163
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 21/88 (23%)
Query: 13 LQGEGGHAGRVAVF-CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
+ GEG F +GC+ +C C G + L
Sbjct: 13 VDGEGIR------FSIYLAGCH-----------HRCPGCHNPESW-NPQAGKPLTPEVLE 54
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV 99
D+I+ I +GG+P
Sbjct: 55 DIIQS--INSNPLLDGITFSGGDPFFNP 80
>gi|323703506|ref|ZP_08115152.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
gi|323531497|gb|EGB21390.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
Length = 332
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 44/175 (25%), Gaps = 20/175 (11%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G FC + + + + +L +Q +
Sbjct: 81 GCNLRCG-----------FCQNWQIAQADPETIHLSPQEAVELALDQK-SKGLPCIGIAY 128
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EP + + + ++ G + + TNG + + D+K
Sbjct: 129 TYSEPFMWYEYVYDTSRLASEAGLKNVMVTNGYVREAPLKKLLPYIDAMNIDVKGFTDDY 188
Query: 149 LKLVFP------QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
K Q V L P E L NP
Sbjct: 189 YKENCAGHLAPVQRTVEIARQGCHVEITTLLVPGLNDSPAEIEQLVDWVAGINPD 243
>gi|299535209|ref|ZP_07048533.1| hypothetical protein BFZC1_04293 [Lysinibacillus fusiformis ZC1]
gi|298729330|gb|EFI69881.1| hypothetical protein BFZC1_04293 [Lysinibacillus fusiformis ZC1]
Length = 291
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
CNL C FC T G V+Q +++E + +
Sbjct: 15 CNL-----------ACSFCPPTARA------KGLIKVEQFNKILDEIRPHTKYIYLHVK- 56
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ A + +GF++ + TNG
Sbjct: 57 --GEPLLHPRIDQLLDAAHAKGFKVNITTNG 85
>gi|284161660|ref|YP_003400283.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus profundus
DSM 5631]
gi|284011657|gb|ADB57610.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus profundus
DSM 5631]
Length = 297
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
C +C + + G L ++IE + + +TGGEPL++ D+ I A
Sbjct: 25 CIYCHNEGMKDAGKD------MSLEEIIEICKVFYDFGVEKVKITGGEPLIRGDIMDIIA 78
Query: 107 LNKRGFEIAVETNGTI 122
EI++ TNG
Sbjct: 79 EMPEFKEISMVTNGYY 94
>gi|182412773|ref|YP_001817839.1| molybdenum cofactor biosynthesis protein A [Opitutus terrae PB90-1]
gi|177839987|gb|ACB74239.1| molybdenum cofactor biosynthesis protein A [Opitutus terrae PB90-1]
Length = 338
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGT----KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
DR + +C +C V + ++ ++ G + R LTGGEPL
Sbjct: 21 DRCNFRCPYCMPKEVFGPAHAFLRDPQLMSQAEITRIVRAFQQLGVTKVR---LTGGEPL 77
Query: 97 LQVDVPLIQALNKRGFEI---AVETNG 120
L+ DVP + K+ + A+ TNG
Sbjct: 78 LRADVPDLVRSLKQELRVPDLALTTNG 104
>gi|148379057|ref|YP_001253598.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
gi|148288541|emb|CAL82621.1| putative cofactor modifying protein [Clostridium botulinum A str.
ATCC 3502]
Length = 292
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + + ++ ++ D I +Q
Sbjct: 15 CNL-----------ACDFC------PETRRKPQFMSIEIFDKILDQI--KPYTDYIYFHV 55
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GEPLL D+ + K+GF++ + TNGT+ I
Sbjct: 56 KGEPLLHPDIDKFLDLSYKKGFKVNITTNGTLINKAKDKII 96
>gi|315605681|ref|ZP_07880714.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315312636|gb|EFU60720.1| anaerobic ribonucleoside-triphosphate reductase small subunit
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 224
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 28/139 (20%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ G ++F GC C +C + R
Sbjct: 3 TVDWPGKF--VASLF--LQGCPW-----------ACPYCHNSAI-----IDPRIPGVVAW 42
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGFEIAVETNGTIE------- 123
+EE V +GGE Q+ + A + GF + + T G
Sbjct: 43 SSLEELLARRRGLLDGVVFSGGEATRQIALASGMARVRELGFAVGLHTAGPYPGRLANLL 102
Query: 124 PPQGIDWICVSPKAGCDLK 142
+DW+ + KA D
Sbjct: 103 DEGLVDWVGIDLKAMPDHY 121
>gi|309774977|ref|ZP_07669994.1| putative pyruvate formate-lyase-activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
gi|308917254|gb|EFP62977.1| putative pyruvate formate-lyase-activating enzyme
[Erysipelotrichaceae bacterium 3_1_53]
Length = 301
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 48/165 (29%), Gaps = 58/165 (35%)
Query: 12 TLQ------GEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRFC- 50
T+Q G G R VF GCNL + +C+ C
Sbjct: 8 TIQRYSTKDGPGI---RSTVF--LIGCNLRCVWCSNPELMLPGDKLLHFSSLCRKCQSCV 62
Query: 51 ----DTDFVGIQGTKGGRYNVDQLADLIEEQWITG------------------------- 81
DT ++ G + +EE
Sbjct: 63 RAYPDTVYM-QDGELHMHKTAQLHSCELEEICPYDALEHTGMQVDPVTLVEQLLKDRIFY 121
Query: 82 EKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEP 124
E+ +GGEPLLQ + L ++G + V+T G +E
Sbjct: 122 EESAGGVTFSGGEPLLQAEALYDALYLLKQKGISVCVDTAGDVEW 166
>gi|254168775|ref|ZP_04875616.1| probable molybdenum cofactor biosynthesis protein A
[Aciduliprofundum boonei T469]
gi|197622212|gb|EDY34786.1| probable molybdenum cofactor biosynthesis protein A
[Aciduliprofundum boonei T469]
Length = 300
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 25/135 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C +G ++ ++ I E + R T
Sbjct: 12 CNLN-----------CFYCH-----REGEWHRHHSEMTPDEIERILKIARELDIRKVKFT 55
Query: 92 GGEPLLQVDVPLIQALNK--RGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + D+ I + ++++ TNG G+D + VS K
Sbjct: 56 GGEPLCRNDIVEIVLKSAPLMDRDVSLTTNGTLLSKYAYELKEVGLDRVNVSLDTLDPEK 115
Query: 143 IKGGQELKLVFPQVN 157
+ ++ ++
Sbjct: 116 YRRITRKDMLNDAID 130
>gi|89900261|ref|YP_522732.1| molybdenum cofactor biosynthesis protein A [Rhodoferax
ferrireducens T118]
gi|89344998|gb|ABD69201.1| GTP cyclohydrolase subunit MoaA [Rhodoferax ferrireducens T118]
Length = 388
Score = 36.8 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + + + + I + + LTGGEPLL+
Sbjct: 56 DRCNFRCNYCMPKEIFDKDYAYLPHKALLSFEEITRIAKVFVAHGVQKIRLTGGEPLLRK 115
Query: 100 DVP-------LIQALNKRGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ ++ + +I + TNG+ G+ + VS D +
Sbjct: 116 NIERLIEQLAALRTPQGQALDITLTTNGSLLARKARDLKAAGLQRVTVSLDGLDDAVFRR 175
Query: 146 GQELKLVFPQV 156
++ V
Sbjct: 176 MNDVDFPVADV 186
>gi|194290177|ref|YP_002006084.1| molybdenum cofactor biosynthesis protein a [Cupriavidus taiwanensis
LMG 19424]
gi|193224012|emb|CAQ70021.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A [Cupriavidus taiwanensis
LMG 19424]
Length = 389
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + LTGGEPLL+
Sbjct: 66 DRCNFRCVYCMPKEVFDKDYTFLPHSELLSFEEIERTARLFVAHGVEKIRLTGGEPLLRK 125
Query: 100 DVPLIQALNKRGFEIAVET 118
++ + + + +ET
Sbjct: 126 NIEHLVEMLAK-----IET 139
>gi|254366274|ref|ZP_04982318.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem]
gi|134151786|gb|EBA43831.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem]
Length = 788
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 65 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 124
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 125 HQPDGYAITAAQCERMLDTLVAAEGEPEVAMFSGGEPTIHKQLLEFVDAAQARPVKTVII 184
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 185 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 241
>gi|113868543|ref|YP_727032.1| molybdenum cofactor biosynthesis protein A [Ralstonia eutropha H16]
gi|113527319|emb|CAJ93664.1| molybdopterin biosynthesis protein [Ralstonia eutropha H16]
Length = 374
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + LTGGEPLL+
Sbjct: 51 DRCNFRCVYCMPKEVFDKDYTFLPHSELLSFEEIERTARLFVAHGVEKIRLTGGEPLLRK 110
Query: 100 DVPLIQALNKRGFEIAVET 118
++ + + + +ET
Sbjct: 111 NIEHLVEMLAK-----IET 124
>gi|307266180|ref|ZP_07547723.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306918784|gb|EFN49015.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 317
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C GI + + ++++ I+ E + TGGEPL++
Sbjct: 18 DRCNLRCIYC-MPEEGIPKKDHNE--ILRNEEILKIIRISAELGIKKVRFTGGEPLVRKG 74
Query: 101 VP--LIQALNKRGFE-IAVETNG 120
+ + + +G E IA+ TNG
Sbjct: 75 IENIIYETSKIKGIEDIALTTNG 97
>gi|167037275|ref|YP_001664853.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040032|ref|YP_001663017.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
X514]
gi|300914120|ref|ZP_07131436.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
X561]
gi|307724644|ref|YP_003904395.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
X513]
gi|320115692|ref|YP_004185851.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854272|gb|ABY92681.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
X514]
gi|166856109|gb|ABY94517.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300889055|gb|EFK84201.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
X561]
gi|307581705|gb|ADN55104.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter sp.
X513]
gi|319928783|gb|ADV79468.1| molybdenum cofactor biosynthesis protein A [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 317
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C GI + + ++++ I+ E + TGGEPL++
Sbjct: 18 DRCNLRCIYC-MPEEGIPKKDHNE--ILRNEEILKIIRISAELGIKKVRFTGGEPLVRKG 74
Query: 101 VP--LIQALNKRGFE-IAVETNG 120
+ + + +G E IA+ TNG
Sbjct: 75 IENIIYETSKIKGIEDIALTTNG 97
>gi|325967917|ref|YP_004244109.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
gi|323707120|gb|ADY00607.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 572
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 31/191 (16%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+R + +C C F ++Q+ ++ +GGEP L+
Sbjct: 162 NRCNMKCPVC---FANAYAAGYVYEPTLEQIEYMLRTLRAQKPWAPNAIQFSGGEPTLRN 218
Query: 100 DVP-LIQALNKRGF-EIAVETNGTIEPPQGIDWI---------------CVSPKAGCDLK 142
D+P +I+ GF I V TNG + + P +
Sbjct: 219 DLPEIIRMAKILGFDHIEVNTNGIRIANDIDYYRKLLDAGMSTIYLQFDTIDPNNQGVWR 278
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERFSLQP-MDGPFLEENTNLAISYCFQNPK-WRL 200
+ K EN L M + + + I + +N R
Sbjct: 279 HRLYDP-KAYAAVKKKVIENARKLGHRSVVLVVTMAKNYNDRDMGKIIDFAIENRDVVR- 336
Query: 201 SVQTHKFIGIR 211
+I I+
Sbjct: 337 ------WINIQ 341
>gi|331645076|ref|ZP_08346187.1| putative activating enzyme [Escherichia coli M605]
gi|330909824|gb|EGH38334.1| radical activating enzyme [Escherichia coli AA86]
gi|331045833|gb|EGI17952.1| putative activating enzyme [Escherichia coli M605]
Length = 287
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD---------------------------- 41
F + G G R+A+F GCNL +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGK 68
Query: 42 --RLSAQCRFCDTDFV---GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
+A C CDT +VD++ + + + + E ++GGE
Sbjct: 69 VAWSAAVCEQCDTCLKMCPQHATPMAQSMSVDEVLNHVRKAVLFIE----GITVSGGEAT 124
Query: 97 --LQVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
L V L A+ + ++NG + + A DLK G + +
Sbjct: 125 TQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPACDGAMLDLKAWGSECHQ 184
Query: 151 LVFPQVNVSPENYIGFDFER 170
+ + N + I ER
Sbjct: 185 QLTGRDNQQIKRSICLLAER 204
>gi|228949890|ref|ZP_04112087.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228809786|gb|EEM56210.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
Length = 146
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 25/108 (23%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC C C G NV ++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HHCLGCHNP-TSWNLYNGIEMNVKEIIK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
I + +GG+P Q + +A+ + + T
Sbjct: 52 EI------SKNPLTDVTFSGGDPFFQAIEVKEVAKAVKSLNKNLWIYT 93
>gi|251796732|ref|YP_003011463.1| radical SAM protein [Paenibacillus sp. JDR-2]
gi|247544358|gb|ACT01377.1| Radical SAM domain protein [Paenibacillus sp. JDR-2]
Length = 292
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC G +++ + +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERAKGFISIEDFTERLDQIKPFTDYIYFHLK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDISHEKGFKVNITTNG 85
>gi|73541471|ref|YP_295991.1| pyrroloquinoline quinone biosynthesis protein PqqE [Ralstonia
eutropha JMP134]
gi|72118884|gb|AAZ61147.1| Coenzyme PQQ biosynthesis protein E [Ralstonia eutropha JMP134]
Length = 389
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 33 NLWSGREQD-RLSAQCRFCDTDFVGIQGTKGGRYNVD----QLADLIEEQWITGEKEGRY 87
LW E R C FC R+ + Q D+ + G +
Sbjct: 20 PLWLLAELTYRCPLHCAFC------SNPVDYARHTAELGTGQWCDVFTQARALGAVQ--- 70
Query: 88 CVLTGGEPLLQVDVPL-IQALNKRGFEIAVETNG 120
L+GGEPLL+ D+ ++ + GF + T+G
Sbjct: 71 LGLSGGEPLLRKDLETLVRHAHGLGFYTNLITSG 104
>gi|269468050|gb|EEZ79768.1| coproporphyrinogen III oxidase [uncultured SUP05 cluster bacterium]
Length = 368
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
L +C +CD F +G Y L DL ++ + + G
Sbjct: 6 PLSLYIHYPWCVKKCPYCD--FNSHEGEDRNGYIEALLKDLDKDLKYVQGRSIHSIFIGG 63
Query: 93 GEPLLQVDVPLI--------QALNKRGFEIAVETN 119
G P L L + ++ EI +ETN
Sbjct: 64 GTPSLMSADELHELFTGLKSKLTFEKNIEITLETN 98
>gi|126458921|ref|YP_001055199.1| radical SAM domain-containing protein [Pyrobaculum calidifontis JCM
11548]
gi|126248642|gb|ABO07733.1| Radical SAM domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 363
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE--PLLQVDVPLI 104
C +C Q +Y + +EE ++ GG+ P + + +
Sbjct: 150 CLYC-------QNWHYRKYPRRPVFASVEELDRAMDRRVSCVCFFGGDPAPQVVHALLVA 202
Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYI 164
+ ++G + ET+G + P + +S K G +K V+ + + +
Sbjct: 203 KRAAEKGVRVCWETSGQLAPHLLDKVVEISLKTGGIVKFDLKAFTPSVYKALTDGEVDIV 262
Query: 165 GFDFE 169
+F+
Sbjct: 263 LRNFK 267
>gi|324112630|gb|EGC06607.1| radical SAM superfamily protein [Escherichia fergusonii B253]
Length = 287
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 34/197 (17%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVNSK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + D + ++GGE L
Sbjct: 69 VVWNAAVCEQCDTCLK-MCPQHATPMAQSMNVDEVLSHVRKAVLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + ++NG + + V A DLK G + + +
Sbjct: 128 PFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N + I ER
Sbjct: 188 GRDNQQIKRSISLLAER 204
>gi|187933302|ref|YP_001886033.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
str. Eklund 17B]
gi|187721455|gb|ACD22676.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
str. Eklund 17B]
Length = 310
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G +V ++ D + + + L+GGEPLLQ + + +++ G +ET
Sbjct: 110 GKEMSVKEVLDELNKDSSQFRRSNGGVTLSGGEPLLQHEFALEILKGCKSIGIHTTIETT 169
Query: 120 GTIE 123
G ++
Sbjct: 170 GYVD 173
>gi|220915224|ref|YP_002490528.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953078|gb|ACL63462.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 356
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 15/116 (12%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ ++ R D + + +++ L E
Sbjct: 80 TAGCNLGCRFCQNWDISKARL-DELHSEVD------WTPERVVALAREA------GCPGI 126
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK 142
T +P++ + + + A G + TNG + P D + DLK
Sbjct: 127 AFTYNDPIIWAEYAIDVADAARAAGLFTVLVTNGYVSPDARRDLFARADATNVDLK 182
>gi|163746267|ref|ZP_02153625.1| radical SAM domain protein [Oceanibulbus indolifex HEL-45]
gi|161380152|gb|EDQ04563.1| radical SAM domain protein [Oceanibulbus indolifex HEL-45]
Length = 315
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
LW + +C C ++ D++ D +++ + + R T
Sbjct: 35 LWFNTG-TLCNIECVNC---YIASSPKNDALVYITADEVRDYLDQ-IVERDWPVREIAFT 89
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
GGEP + V + +A RG+E+ + TN
Sbjct: 90 GGEPFMNPQMVEITEASLMRGYEVLILTNAMRP 122
>gi|226310331|ref|YP_002770225.1| hypothetical protein BBR47_07440 [Brevibacillus brevis NBRC 100599]
gi|226093279|dbj|BAH41721.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 291
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC T+ G+ + ++ D + +
Sbjct: 15 CNL-----------ACTFC-------PPTERGK-SFIKVEDFAKRLDEIKPHTDYIYLHV 55
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
GEPLL L+ +++GF++ + TNG
Sbjct: 56 KGEPLLHPKIDELLDISHEKGFKVNITTNG 85
>gi|158522203|ref|YP_001530073.1| glycyl-radical activating family protein [Desulfococcus oleovorans
Hxd3]
gi|158511029|gb|ABW67996.1| glycyl-radical enzyme activating protein family [Desulfococcus
oleovorans Hxd3]
Length = 307
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 27/174 (15%)
Query: 32 CN---LWSGREQDRLSAQCRFCDTDFVGIQGTK-------GGRYNVDQLADLIEEQWITG 81
C L +C C F + G V + + +
Sbjct: 68 CPEQALSKANPFYIDRKRCTLC---FACVAACPSGALEQVGKEMPVTDILEQVLPDKPFF 124
Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
+ G L+GGEP L +D L+ A+ + VET G + + + +
Sbjct: 125 DASGGGVTLSGGEPTLFMDFTADLLTAIKREDIHTLVETCGLFDAERFVTML-------Y 177
Query: 140 DLKIKGGQELKLVFPQVNVS----PENYIGFDFERFSLQ-PMDGPFLEENTNLA 188
+ ++K++ P + + P + I +F + P DG L T L
Sbjct: 178 PMLDTIYFDIKIIDPTAHKTYCGVPNDRILANFATLFARAPKDGKTLLPRTPLI 231
>gi|313676823|ref|YP_004054819.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Marivirga tractuosa DSM 4126]
gi|312943521|gb|ADR22711.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Marivirga tractuosa DSM 4126]
Length = 229
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
+GCN +C +C + + G+ ++++ + + + V
Sbjct: 29 AGCN-----------MRCGYCYNPDIVL---GKGKISIEE----VLRFLKSRKGLLDGIV 70
Query: 90 LTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
++GGE + + Q + K G I V+TNG+
Sbjct: 71 MSGGECTMHPSLITFAQEVKKLGMLIKVDTNGSRP 105
>gi|206559374|ref|YP_002230135.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia J2315]
gi|206561224|ref|YP_002231989.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia J2315]
gi|198035412|emb|CAR51288.1| molybdenum cofactor biosynthesis protein A 2 [Burkholderia
cenocepacia J2315]
gi|198037266|emb|CAR53188.1| molybdenum cofactor biosynthesis protein A 1 [Burkholderia
cenocepacia J2315]
Length = 370
Score = 36.8 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDTLFKR 164
Query: 146 GQELKLVFPQV 156
+ + V
Sbjct: 165 MNDAEFASADV 175
>gi|323699436|ref|ZP_08111348.1| Radical SAM domain protein [Desulfovibrio sp. ND132]
gi|323459368|gb|EGB15233.1| Radical SAM domain protein [Desulfovibrio desulfuricans ND132]
Length = 370
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN + + +C +C T + L + ++ G LT
Sbjct: 5 CNTLIWNMTRKCNFRCEYCYFPHDNTPVT-------ETLDARRIKAFLDGTGRTWKVGLT 57
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETN 119
GGEP + + I A I ++TN
Sbjct: 58 GGEPFIYPGINDICATLTETHVIGIDTN 85
>gi|225571359|ref|ZP_03780355.1| hypothetical protein CLOHYLEM_07457 [Clostridium hylemonae DSM
15053]
gi|225159835|gb|EEG72454.1| hypothetical protein CLOHYLEM_07457 [Clostridium hylemonae DSM
15053]
Length = 202
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI 122
+V+++ +TGGEPL+Q+D L + L + G ++T+G +
Sbjct: 1 MSVEEVLQGFYSNLPF--YRSGGVTVTGGEPLMQMDFLTELFRDLKRHGVHTCIDTSGIM 58
Query: 123 EPPQGIDWIC 132
P ++
Sbjct: 59 FNPHNETFMS 68
>gi|219559812|ref|ZP_03538888.1| putative transferase [Mycobacterium tuberculosis T17]
Length = 535
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 19/177 (10%)
Query: 16 EGGHAGRVAVF-CRFS-----GCNLWSGREQDRLSAQCRF-----------CDTDFVGIQ 58
E + F RF GC G D C C F
Sbjct: 65 ESARFNKPGTFPLRFQTEVRDGCPSDCGLCPDHKQHACLGLIEVNTHCNLDCPICFADSG 124
Query: 59 GTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFE-IAV 116
G + + + + E E + +GGEP + + + A R + + +
Sbjct: 125 HQPDGYAITAAQCERMLDTLVAAEGEPEVVMFSGGEPTIHKQLLEFVDAAQARPVKTVII 184
Query: 117 ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
TNG ++ + + + + + + D ++ +L
Sbjct: 185 NTNGIRLASDRRFVDQLATRNRPGHPVHIYLQFDGLDEATHRRIRGHDLRDVKQRAL 241
>gi|134300585|ref|YP_001114081.1| glycyl-radical activating family protein [Desulfotomaculum reducens
MI-1]
gi|134053285|gb|ABO51256.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
reducens MI-1]
Length = 310
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 38/253 (15%), Positives = 73/253 (28%), Gaps = 74/253 (29%)
Query: 11 LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ-----------------CRFC-- 50
++ G G VF GC L + S C +C
Sbjct: 21 YSVHDGPGIRT---IVF--LKGCPLRCQWCANPESQHFHPELAYNANKCISIKECGWCIK 75
Query: 51 --DTDFVGIQGTKGGRYN---------------------------VDQLADLIEEQWITG 81
+T+ + + VD++ +L+E+
Sbjct: 76 SCETEAIKHDQNGKITVDRERCTNCGKCTDICPSKALNMYGELKRVDEVIELVEQDSSFY 135
Query: 82 EKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
+ G L+GGEPL+Q + + +++ +R A+ET G + + +
Sbjct: 136 MRSGGGITLSGGEPLVQAEFALEVLKEAKRRRLNTAIETCGYADWEKAVTVFEYVDNILF 195
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFS-------------LQPMDGPFLEENTN 186
D+K K N I +F++ + P E++
Sbjct: 196 DIKSINSTRHKQFTGVGN----ETILENFKKLCNCFPNTPITVRTPVIPGFN-DTEQDIL 250
Query: 187 LAISYCFQNPKWR 199
I + P +
Sbjct: 251 AIIDFIKCYPNVK 263
>gi|84390457|ref|ZP_00991468.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01]
gi|84376717|gb|EAP93593.1| pyruvate formate-lyase activating enzyme [Vibrio splendidus 12B01]
Length = 304
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 49/235 (20%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD--------------------------- 41
F + G G R+ +F GCN +
Sbjct: 29 TFSCVDGPGN---RLVLF--LQGCNFDCITCHNPHTINHCNHCGDCVSGCPSSALSMIDG 83
Query: 42 ---RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
A C CD + N +++ + E + ++GGE +Q
Sbjct: 84 KVNWDPAACTNCDQCIDVCDHKSSPKINTMAVSE-VLELVRHNQFFLSGITISGGEATMQ 142
Query: 99 V--DVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ + L QA+ +++NG++ + A DLK + + +
Sbjct: 143 LPFIIELFQAIKSDLQLAHLTCFIDSNGSLSLQGWDKVLPYLDGAMIDLKSWQSETHQWL 202
Query: 153 FPQVNVSPENYIGF------DFERFSLQPMDGPFLEENTNLAISYCFQNPK-WRL 200
+ N I + E L + LE+ Y P R+
Sbjct: 203 VGRGNHRVFETINYLAGKGKLHEVRLLHIPNKSDLEDEVEQVGRYLKTLPNDVRI 257
>gi|298527846|ref|ZP_07015250.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511498|gb|EFI35400.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 212
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GR++ F GCNL +C C + V ++E+
Sbjct: 25 GRISAVLFFGGCNL-----------RCPTC---HNASFAWHPESFPVLDCLGVLEQVQRN 70
Query: 81 GEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP 125
VLTGGE + L+ L+ I ++TNG
Sbjct: 71 RNW-LEGLVLTGGEVTILPGFDSLLHDLSSLNIPIKLDTNGLSPDC 115
>gi|159044234|ref|YP_001533028.1| hypothetical protein Dshi_1685 [Dinoroseobacter shibae DFL 12]
gi|157911994|gb|ABV93427.1| hypothetical protein Dshi_1685 [Dinoroseobacter shibae DFL 12]
Length = 314
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
LW + +C C ++ T ++ D +++ R T
Sbjct: 34 LWFNTG-TLCNIECANC---YIESSPTNDRLVYITAAEVTDYLDQL-EDRNWGVREIAFT 88
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP 125
GGEP + + + +A RG+E+ + TN +
Sbjct: 89 GGEPFMNPEMIEMTEAALARGYEVLILTNAMLPMM 123
>gi|119945837|ref|YP_943517.1| molybdenum cofactor biosynthesis protein A [Psychromonas ingrahamii
37]
gi|189028694|sp|A1SWQ3|MOAA_PSYIN RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|119864441|gb|ABM03918.1| GTP cyclohydrolase subunit MoaA [Psychromonas ingrahamii 37]
Length = 339
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN + + + ++ +L+ G K+ R +T
Sbjct: 36 CNFKCNYCLPDGYQRTH------------EKQFLSKQEITNLVNAFAELGAKKVR---IT 80
Query: 92 GGEPLLQVDVPLIQALNKR--GFE-IAVETNGTIEPPQGIDW-------ICVSPKAGCDL 141
GGEP L+ D P I G + +A TNG W I VS D
Sbjct: 81 GGEPALRKDFPKIIEAIATIPGIQKVATTTNGYNLSSHAQAWFDAGLDSINVSV-DSLDA 139
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSL-QPMDGPFLEENTNLAISYCFQNP-KWR 199
K K +F +V + F++ + + + + +L I++ P + R
Sbjct: 140 KTFHLITGKNIFQKVMQGVNASVKAGFKQVKINSVLMKGLNDIDIDLYINWIKDQPIQLR 199
Query: 200 LS--VQT 204
+QT
Sbjct: 200 FIELMQT 206
>gi|212712166|ref|ZP_03320294.1| hypothetical protein PROVALCAL_03248 [Providencia alcalifaciens DSM
30120]
gi|212685213|gb|EEB44741.1| hypothetical protein PROVALCAL_03248 [Providencia alcalifaciens DSM
30120]
Length = 326
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D + +C +C + GR+ L ++ E +TGGEP ++ D
Sbjct: 21 DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRVSRAFAELGTEKVRITGGEPTMRKD 76
Query: 101 VPLIQALNKRG---FEIAVETNGTIEPPQGIDW 130
I A K +IAV TNG W
Sbjct: 77 FTDIIAAIKENDSIKKIAVTTNGYRMARDVQAW 109
>gi|229161145|ref|ZP_04289132.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
R309803]
gi|228622241|gb|EEK79080.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
R309803]
Length = 337
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 41 DRLSAQCRFC------DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGE 94
DR + +C +C TD+ +Q D++ L G ++ R LTGGE
Sbjct: 22 DRCNFRCTYCMPAEVFGTDYAFLQEE--CLLTFDEIERLARLFISMGVEKIR---LTGGE 76
Query: 95 PLLQVDVP--LIQALNKRGFE-IAVETNGTI 122
PLL+ D+P + + G + I + TNG
Sbjct: 77 PLLRKDLPKLIARLAKLEGLKDIGLTTNGIH 107
>gi|16081755|ref|NP_394141.1| hypothetical protein Ta0670 [Thermoplasma acidophilum DSM 1728]
gi|10639956|emb|CAC11808.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 571
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 18/104 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G +R C +C F + DQ+ ++
Sbjct: 94 CPTHCGLCVKHKSHTGLGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRM 151
Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETN 119
+TGGEP ++ D + +++ + G+ + + TN
Sbjct: 152 KNEKPVGANAVQITGGEPTMRDDIIDIVRIAREEGYDHVQLNTN 195
>gi|329929025|ref|ZP_08282827.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5]
gi|328937014|gb|EGG33443.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. HGF5]
Length = 334
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + +G + ++ + ++ + LTGGEPL++
Sbjct: 22 DRCNLRCVYC----MPEEGMEFQPHDQIMSYEEIAAIMRVLAPMGVSKVRLTGGEPLVRK 77
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+ + + + G + I++ TNG +
Sbjct: 78 DLETLVHKIASIEGVQDISLTTNGIM 103
>gi|119719510|ref|YP_920005.1| putative molybdenum cofactor biosynthesis protein A [Thermofilum
pendens Hrk 5]
gi|119524630|gb|ABL78002.1| putative molybdenum cofactor biosynthesis protein A [Thermofilum
pendens Hrk 5]
Length = 348
Score = 36.8 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 27/129 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN C FC + + ++++E + LT
Sbjct: 29 CNFN-----------CVFC------HGEGEPPNNALLSASEIVEVASVAHSLGVGTFKLT 71
Query: 92 GGEPLLQVDVPLIQALNK---RGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDL 141
GGEPLL+ D+ I A K RG E+++ TNG G+D + VS A
Sbjct: 72 GGEPLLRKDLERIVAGLKSFGRGVEVSLTTNGFFLEKRVPSLVEAGLDRVNVSLHAFDPE 131
Query: 142 KIKGGQELK 150
+G +K
Sbjct: 132 VFEGVTRVK 140
>gi|261414525|ref|YP_003248208.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261370981|gb|ACX73726.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327031|gb|ADL26232.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 358
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 15/174 (8%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
R + C C +D V R + ++ D + + V+TGGEPL++
Sbjct: 34 CTLRCNLHCLHCGSDCVADAIPDMPREDFMRVLDGVS---PHVDPSNFIVVITGGEPLMR 90
Query: 99 -VDVPLIQALNKRGFEIAVETNGTIEPPQ--------GIDWICVSPKAGCDLKIKGGQEL 149
+ + + RG+ + TNG P+ G+ + +S G + +
Sbjct: 91 ADLEEIGKDIKARGYPWGMVTNGLALNPERYTKLMNAGLRALTISL-DGLEENHNHFRGN 149
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN--PKWRLS 201
F + + D F + + + +WR+S
Sbjct: 150 AHSFERAVRAINMASHTDGITFDVMTCVNRKNLKELPKIYNLLLNLGVKRWRVS 203
>gi|302390995|ref|YP_003826815.1| radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
gi|302203072|gb|ADL11750.1| Radical SAM domain protein [Acetohalobium arabaticum DSM 5501]
Length = 329
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 26/176 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDF-VGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL +FC Q + R +++ L++ +
Sbjct: 81 GCNLRC-----------QFCQNYHIAHNQEAETRRLEPEEIVTLVK------KHNSIGAA 123
Query: 90 LTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL+ + Q +++ G + + TNG I P + DLK +
Sbjct: 124 YTYSEPLIWYEYILDTAQLIHQTGLKNVLVTNGLINPEPLAGLLSYIDGLNIDLKAFSEE 183
Query: 148 ELKLVFP------QVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
+ + + ++ N L P EE L NP
Sbjct: 184 FYRDICQGYLEPVKESIRLANQEALVEVTTLLIPGLNDSREEIEELTAWLADINPD 239
>gi|227327963|ref|ZP_03831987.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 316
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 41 DRLSAQCRFCDT-DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
CR C+T G G V +L ++I + + G L+GGE LQ
Sbjct: 92 TANCIGCRKCETVCLSGALDVIGQEMTVTELMEIIMQDYPFYVSSGGGVTLSGGEMSLQT 151
Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
D V L+ A + AVET GT V+ D+K Q+ K +F
Sbjct: 152 DFAVELLTACKRMMINTAVETQGTTLKSHYSKLAAVTDLFLFDIKHIDTQQHKALF 207
>gi|113196163|gb|ABI31437.1| PqqE [Serratia marcescens]
Length = 370
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 17/157 (10%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R QC +C + Q ++ + G + +GGE + +
Sbjct: 20 RCPLQCPYCSNPLDF--SAQEKELTTAQWIEVFRQARAMGSVQ---LGFSGGELVRKDLP 74
Query: 102 PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPE 161
LI A GF + T+G I ++ K G +++ F + +
Sbjct: 75 ELIAAARDLGFYTNLITSG----------IGLTEKKLQTFADAGLDHIQISFQASDETLN 124
Query: 162 NYIGFDFERFSLQPMDGPFLEE-NTNLAISYCFQNPK 197
+ + FS G ++ + +++
Sbjct: 125 AALAVSAKHFSRS-CHGKAVKALGYPMVLNFVLHRHN 160
>gi|170732420|ref|YP_001764367.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia MC0-3]
gi|254245935|ref|ZP_04939256.1| Radical SAM:Molybdenum cofactor synthesis C [Burkholderia
cenocepacia PC184]
gi|124870711|gb|EAY62427.1| Radical SAM:Molybdenum cofactor synthesis C [Burkholderia
cenocepacia PC184]
gi|169815662|gb|ACA90245.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia MC0-3]
Length = 370
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDALFKR 164
Query: 146 GQELKLVFPQV 156
+ + V
Sbjct: 165 MNDAEFASADV 175
>gi|107022186|ref|YP_620513.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia AU 1054]
gi|116689132|ref|YP_834755.1| molybdenum cofactor biosynthesis protein A [Burkholderia
cenocepacia HI2424]
gi|105892375|gb|ABF75540.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia AU 1054]
gi|116647221|gb|ABK07862.1| GTP cyclohydrolase subunit MoaA [Burkholderia cenocepacia HI2424]
Length = 370
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE-QWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + +TGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYPFLPHSALLTHEEIERVARLFVAHGVEKIRITGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D K
Sbjct: 105 NLEFLIERLARLTTHAGRPLDLTLTTNGSLLARKARALKDAGLTRVTVSLDALDDALFKR 164
Query: 146 GQELKLVFPQV 156
+ + V
Sbjct: 165 MNDAEFASADV 175
>gi|313895315|ref|ZP_07828872.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976210|gb|EFR41668.1| radical SAM domain protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 358
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 14/162 (8%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R + C C ++ K + + +E G + ++GGEPL D+
Sbjct: 53 RCNMTCPHC-SNLCF--SPKKRWLTPEIIKRFCDEADALGLAQ---MSVSGGEPLTFPDL 106
Query: 102 P-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSP 160
+++A+ F I++ TNG + + W+ + + E F +
Sbjct: 107 EDVVKAIGPDRFHISMSTNGALLTLEKAKWVKSIGIDKLKISLDCIDENGPSFHDKGQTS 166
Query: 161 ENYIGFDFERFS-LQPMDGPF------LEENTNLAISYCFQN 195
D + LQP+ E T YC +
Sbjct: 167 AALRALDNALAADLQPVAQTVVTRQNCQTEQTERMAEYCQER 208
>gi|257388542|ref|YP_003178315.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
mukohataei DSM 12286]
gi|257170849|gb|ACV48608.1| molybdenum cofactor biosynthesis protein A [Halomicrobium
mukohataei DSM 12286]
Length = 335
Score = 36.8 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 17/174 (9%)
Query: 41 DRLSAQCRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + C +C + +G +G + + +++ + + TGGEPLL+
Sbjct: 19 DRCNFDCVYCHNEGLGDTRGPLAAQDDELSTDRVVDFLEVAADLGVDSVKFTGGEPLLRE 78
Query: 100 DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKI---KGGQEL 149
D+ I +++ TNGT P G++ + +S A
Sbjct: 79 DLAEIVERTPDEMAVSLTTNGTYLPGRASELVDAGLERVNISQDALDREAFAELTQSGAY 138
Query: 150 KLVFPQVNVS-PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSV 202
V V + +P G + + +N RL +
Sbjct: 139 DRVLEGVEAAVDAGLAPVKINMVVFEPTAG-----YVPEMVDHVVENEGLRLQL 187
>gi|303241655|ref|ZP_07328153.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302590770|gb|EFL60520.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 425
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 15/133 (11%)
Query: 31 GCNLWSGREQDRLSAQCR-----------FCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
GC G C C + KG +D++ ++++
Sbjct: 46 GCPFDCGVCPQHDQHACIGLIEVTAKCNLHCPLCYA--DAGKGHFLGLDKIENMMDFFQE 103
Query: 80 TGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGF-EIAVETNGTIEPPQGIDWICVSPKA 137
+ + ++GGEP L +I+ + F + + TNG +
Sbjct: 104 SEGGQAEILQISGGEPTLHPEITEIIKLAKTKKFKYVMLNTNGIRIAEDEAFVKELGQFV 163
Query: 138 GCDLKIKGGQELK 150
G K
Sbjct: 164 GGFEIYLQFDGFK 176
>gi|255011415|ref|ZP_05283541.1| putative radical SAM-family protein [Bacteroides fragilis 3_1_12]
Length = 361
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
C L + CR + ++ + +I+ ++T
Sbjct: 39 CTLRCNLACKHCGSDCR---------KMSEQKDMPAEDFLRVIDSITPHVNPNEVNIIIT 89
Query: 92 GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTI 122
GGEPL++ D+ + AL +RG+ + +NG
Sbjct: 90 GGEPLMRNDLEKVGLALYRRGYPWGIVSNGLY 121
>gi|221636246|ref|YP_002524122.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
gi|221157912|gb|ACM07030.1| radical SAM domain protein [Thermomicrobium roseum DSM 5159]
Length = 365
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN + ++ LI+E Y +
Sbjct: 24 CNFNCVHCLSSSGKRAS--------------DELTTEEAKRLIDEWAALRVF---YINVG 66
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPLL+ D V L++ RG + TNG++ DWI
Sbjct: 67 GGEPLLRPDFVELMEYAIARGIGVKFSTNGSLIDEAVADWI 107
>gi|14325177|dbj|BAB60102.1| molybdenum cofactor biosynthesis protein [Thermoplasma volcanium
GSS1]
Length = 606
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 18/104 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G +R C +C F + DQ+ ++
Sbjct: 129 CPTHCGLCVKHKSHTGLGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRM 186
Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETN 119
+TGGEP ++ D + +++ + G+ + + TN
Sbjct: 187 KNEKPVGANAVQITGGEPTMRDDIIDIVRIAREEGYDHVQLNTN 230
>gi|300245631|gb|ADJ93873.1| putative glycyl-radical enzyme activating protein [Clostridia
bacterium enrichment culture clone BF]
Length = 265
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G + VD++ +EE + G ++GGEPL Q D L++ +RG A+ET
Sbjct: 70 GEQMPVDEVVKRVEEDGAFFWRSGGGVTVSGGEPLQQSDFVAELLKTCRERGIHTALETC 129
Query: 120 GTIEP 124
G +
Sbjct: 130 GHADW 134
>gi|297618346|ref|YP_003703505.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
gi|297146183|gb|ADI02940.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
Length = 335
Score = 36.8 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL G FC + + R + +++ L EE +
Sbjct: 83 GCNLSCG-----------FCQNYELVVGDVPRRRLDPEEVVQLAEE---VRSRGNIGIAY 128
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL+ + + KR + + TNG +E +D + DLK +
Sbjct: 129 TYSEPLVWYEFVADTARLARKRALKNVLVTNGFVEEEPLLDLLPYVDAVNIDLKSFKDE 187
>gi|323964779|gb|EGB60247.1| radical SAM superfamily protein [Escherichia coli M863]
gi|327250002|gb|EGE61732.1| radical SAM superfamily protein [Escherichia coli STEC_7v]
Length = 287
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGKCVPQCPHQALQIINSK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + D + ++GGE L
Sbjct: 69 VVWNAAVCEQCDTCLK-MCPQHATPMAQSMSVDEVLRHIRKAVLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + ++NG + + V A DLK GG + +
Sbjct: 128 PFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGGACHQQLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N + I ER
Sbjct: 188 GRDNQQIKRSISLLAER 204
>gi|282917614|ref|ZP_06325366.1| LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis protein A
[Staphylococcus aureus subsp. aureus D139]
gi|282318576|gb|EFB48934.1| LOW QUALITY PROTEIN: molybdenum cofactor biosynthesis protein A
[Staphylococcus aureus subsp. aureus D139]
Length = 217
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|297545376|ref|YP_003677678.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296843151|gb|ADH61667.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 453
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ--WITGEKEGRYC 88
GCN+ S + + + +QL ++I++ WI +
Sbjct: 77 GCNMNCPYCYIPESYR-------------RNYQKMSYNQLEEIIDKLSKWINERGGIKRI 123
Query: 89 VLTGGEPLLQVDVPLIQALN-KRGFEIAVETNGTIEPPQGIDWI 131
+ GGEPLL ++ + E ++TNGT+ + +I
Sbjct: 124 IFHGGEPLLAKEIFFPIIEKYYKEIEFGIQTNGTLLTEEDAAFI 167
>gi|229086170|ref|ZP_04218387.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock3-44]
gi|228697142|gb|EEL49910.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus Rock3-44]
Length = 105
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G N +++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCLGCHNPQSW-NMCNGSEMNTEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I + +GG+P Q
Sbjct: 52 EI------AKNPLTDVTFSGGDPFFQ 71
>gi|109157586|pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
gi|109157587|pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|222824419|ref|YP_002575993.1| molybdenum cofactor biosynthesis protein A [Campylobacter lari
RM2100]
gi|254811538|sp|B9KDV3|MOAA_CAMLR RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|222539640|gb|ACM64741.1| molybdenum cofactor biosynthesis protein A [Campylobacter lari
RM2100]
Length = 322
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 42 RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
R + +C +C T F + ++L ++ G K+ R +TGGEPL++
Sbjct: 20 RCNFRCLYCMPKTPFEWSAKEN--LLSFEELFMFVKVCIDEGVKKIR---ITGGEPLVRK 74
Query: 100 DVPLIQAL---NKRGFEIAVETNGT-------IEPPQGIDWICVS---PKAGCDLKIKGG 146
D+ A+ K+ ++A+ TN + G+ I +S K K+
Sbjct: 75 DLYKFIAMISEYKQDIDLALTTNASLLKQQAKDLRQAGLKRINISLDTLKEDVAFKLAQK 134
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSL 173
LK V ++ + F +L
Sbjct: 135 NILKDVLNGIDEALNLGFNVKFNTVAL 161
>gi|227501282|ref|ZP_03931331.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Anaerococcus
tetradius ATCC 35098]
gi|227216515|gb|EEI81921.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Anaerococcus
tetradius ATCC 35098]
Length = 312
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW-ITGEKEGRYCVLTGGEPLLQV 99
DR + +C++C +G G ++ + I+E I + + +TGGEP ++
Sbjct: 18 DRCNFRCKYC----IGDDGVDLLKHEDILSYEEIKEIAEICADFGIKKIRVTGGEPFVRR 73
Query: 100 --DVPLIQALNKRGFE-IAVETNG 120
G E I V TNG
Sbjct: 74 GLLNLFEMLTKIDGIEDIGVTTNG 97
>gi|320100789|ref|YP_004176381.1| Radical SAM domain-containing protein [Desulfurococcus mucosus DSM
2162]
gi|319753141|gb|ADV64899.1| Radical SAM domain protein [Desulfurococcus mucosus DSM 2162]
Length = 358
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 53/175 (30%), Gaps = 27/175 (15%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCN + CRFC + G + +++EE +
Sbjct: 88 TAGCNFY-----------CRFCQNWVLSQSRRNGMFGKPYEPWEVVEEAV---GSGCQGI 133
Query: 89 VLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGTIEPPQG------IDWICVSPKAGCD 140
T EP + + + ++G + TNG + P ID V KA +
Sbjct: 134 SYTYNEPTVFYEFMYDVAKLAKEKGLYNTMVTNGYMTPEAIGKLGGLIDAATVDFKASGN 193
Query: 141 LKIKGGQ----ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+ ++ + + + + P G +E+ LA
Sbjct: 194 KDFYRRYMGVPDPSPIYESLIEMKKQGWWIEVTNL-IVPRVGDRIEDTVKLAEWI 247
>gi|268324535|emb|CBH38123.1| conserved hypothetical protein, radical SAM superfamily [uncultured
archaeon]
Length = 394
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL G+ ++ + I++ E + T
Sbjct: 51 CNLACTHCYIN------------AGLDVDISNELSLAEAKAFIDDL---AEMRAPLILFT 95
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPL++ D L ++G + A+ TNG
Sbjct: 96 GGEPLMRKDFWELATYATEKGLKTAISTNG 125
>gi|196044520|ref|ZP_03111755.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus 03BB108]
gi|196024555|gb|EDX63227.1| putative anaerobic ribonucleoside-triphosphate reductase
activating protein [Bacillus cereus 03BB108]
Length = 150
Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC C + + +
Sbjct: 12 VDGEGLRT---VVF--FAGCPHRC--------FGCH-------NPKSWNICNGTEMAVEE 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
+++E +GG+P Q
Sbjct: 52 IVKEI---ASNPLTDVTFSGGDPFFQ 74
>gi|253689906|ref|YP_003019096.1| glycyl-radical enzyme activating protein family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756484|gb|ACT14560.1| glycyl-radical enzyme activating protein family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 316
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 41 DRLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
CR C+T G G V +L ++I + + G L+GGE LQ
Sbjct: 92 TADCIGCRKCETACLSGALDVIGQEMTVTELMEIIMQDYPFYLSSGGGVTLSGGEMSLQT 151
Query: 100 D--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
D V L+ A + AVET GT V+ D+K Q+ K +F
Sbjct: 152 DFAVDLLTACKRMMIHTAVETQGTTLKSYYSRLAAVTDLFLFDIKHIDTQQHKALF 207
>gi|220917203|ref|YP_002492507.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219955057|gb|ACL65441.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 334
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WI 79
GR V+ R S DR + +C +C + D + I
Sbjct: 18 GRRIVYLRLS--------LTDRCNFRCSYC-------SPAAPETHEDPLARDEVARLVRI 62
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGF-EIAVETNGT 121
G R LTGGEP L+ DV + + G E+A+ TNG
Sbjct: 63 FGGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGH 107
>gi|197122436|ref|YP_002134387.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K]
gi|196172285|gb|ACG73258.1| molybdenum cofactor biosynthesis protein A [Anaeromyxobacter sp. K]
Length = 334
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WI 79
GR V+ R S DR + +C +C + D + I
Sbjct: 18 GRRIVYLRLS--------LTDRCNFRCSYC-------SPAAPETHEDPLARDEVARLVRI 62
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGF-EIAVETNGT 121
G R LTGGEP L+ DV + + G E+A+ TNG
Sbjct: 63 FGGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGH 107
>gi|134046071|ref|YP_001097557.1| molybdenum cofactor biosynthesis protein A [Methanococcus
maripaludis C5]
gi|189028687|sp|A4FYQ8|MOAA_METM5 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|132663696|gb|ABO35342.1| GTP cyclohydrolase subunit MoaA [Methanococcus maripaludis C5]
Length = 298
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G G + D++ +++ E R ++
Sbjct: 20 CNLK-----------CFYCH--KEGRNEEHGKLMSADEIGKIVKSSL---EFGVRKIKIS 63
Query: 92 GGEPLLQ-VDVPLIQALNKRGFE-IAVETNG 120
GGEPLL+ +I+ + + I++ TNG
Sbjct: 64 GGEPLLRTDLPEIIENIKDEQIKDISLTTNG 94
>gi|86158254|ref|YP_465039.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774765|gb|ABC81602.1| GTP cyclohydrolase subunit MoaA [Anaeromyxobacter dehalogenans
2CP-C]
Length = 334
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WI 79
GR V+ R S DR + +C +C + D + I
Sbjct: 18 GRRIVYLRLS--------LTDRCNFRCSYC-------SPAAPETHEDPLARDEVARLVRI 62
Query: 80 TGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGF-EIAVETNGT 121
G R LTGGEP L+ DV + + G E+A+ TNG
Sbjct: 63 FGGLGIRRVRLTGGEPTLRRDVLDVIREVARAPGIEEVALTTNGH 107
>gi|253574226|ref|ZP_04851568.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251846703|gb|EES74709.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 335
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C + + +++A+ + G ++ R LTGGEPL++ D
Sbjct: 21 DRCNLRCVYCMPAEGMVFQPHEEIMSYEEIAETVSALTPMGLRKIR---LTGGEPLVRKD 77
Query: 101 VPLIQALNKR--GFE-IAVETNGTI 122
+ + A+ G E IA+ TNG
Sbjct: 78 LEQLVAMLSSIPGIEDIALTTNGMF 102
>gi|49484483|ref|YP_041707.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257423751|ref|ZP_05600180.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257426429|ref|ZP_05602831.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257429068|ref|ZP_05605455.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 68-397]
gi|257431715|ref|ZP_05608078.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus E1410]
gi|257434675|ref|ZP_05610726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M876]
gi|282902170|ref|ZP_06310063.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus C160]
gi|282906610|ref|ZP_06314458.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282909580|ref|ZP_06317391.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911828|ref|ZP_06319624.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282915116|ref|ZP_06322893.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M899]
gi|282920843|ref|ZP_06328561.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus C427]
gi|282925748|ref|ZP_06333396.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus C101]
gi|283959046|ref|ZP_06376487.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293497520|ref|ZP_06665374.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 58-424]
gi|293511095|ref|ZP_06669792.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M809]
gi|293549701|ref|ZP_06672373.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M1015]
gi|295428850|ref|ZP_06821474.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|81650568|sp|Q6GEG6|MOAA_STAAR RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|49242612|emb|CAG41333.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus
aureus subsp. aureus MRSA252]
gi|257272769|gb|EEV04871.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257276060|gb|EEV07511.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257279549|gb|EEV10136.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 68-397]
gi|257282594|gb|EEV12726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus E1410]
gi|257285271|gb|EEV15387.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M876]
gi|282312577|gb|EFB42981.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus C101]
gi|282315258|gb|EFB45642.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus C427]
gi|282320837|gb|EFB51171.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M899]
gi|282323524|gb|EFB53840.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282326559|gb|EFB56861.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282329509|gb|EFB59030.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282596629|gb|EFC01588.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus C160]
gi|283788638|gb|EFC27465.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290918748|gb|EFD95824.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M1015]
gi|291096451|gb|EFE26709.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466082|gb|EFF08611.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus M809]
gi|295127199|gb|EFG56841.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|312437321|gb|ADQ76392.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus TCH60]
gi|315193523|gb|EFU23919.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus
aureus subsp. aureus CGS00]
Length = 340
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|152979335|ref|YP_001344964.1| molybdenum cofactor biosynthesis protein A [Actinobacillus
succinogenes 130Z]
gi|171704353|sp|A6VPY2|MOAA_ACTSZ RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|150841058|gb|ABR75029.1| molybdenum cofactor biosynthesis protein A [Actinobacillus
succinogenes 130Z]
Length = 336
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 20/175 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D + +C +C D + VD++ + G ++ R +TGGEP L+ D
Sbjct: 30 DVCNFRCNYCLPDGYHPSHERDKFLTVDEIRRAVSAFAAMGAQKVR---ITGGEPTLRKD 86
Query: 101 VPLIQALNKR--GFE-IAVETNGTIEPPQGIDW-------ICVSPKA-GCDLKIKGGQEL 149
I G +A+ TNG W I VS + + + E
Sbjct: 87 FLQITENITALDGIRHVALTTNGYRMAQDVGAWKQAGISSINVSVDSLDPRMFYQITGEN 146
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLSVQT 204
K + G+ + + + E + +++ P +Q
Sbjct: 147 KFTEVMRGIDRAFEAGYRKIKVN-SVLMKDLNEREFDKFLAWVKDRP-----IQM 195
>gi|189347857|ref|YP_001944386.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
gi|189342004|gb|ACD91407.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
Length = 364
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 16/129 (12%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQV 99
+ + C C V + + + D I++ E + R LTGGEP +
Sbjct: 21 KCTIACPHC---IVNAGPNRKEEMDAVRALDWIDQAAAYDEGKVRGLALTGGEPFYNIDH 77
Query: 100 DVPLIQALNKRGFEIAVETNGTI-----------EPPQGIDWICVSPKAGCDLKIKGGQE 148
+ ++G +V TN ID++ +S I
Sbjct: 78 LSRISGYAREKGLVTSVVTNAFWAKEKQPALEALNQVPAIDYLSISTDVHHQRFIPIDNI 137
Query: 149 LKLVFPQVN 157
V+
Sbjct: 138 RNAVWAARE 146
>gi|227496402|ref|ZP_03926690.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces urogenitalis DSM 15434]
gi|226834087|gb|EEH66470.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Actinomyces urogenitalis DSM 15434]
Length = 270
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 34/131 (25%), Gaps = 26/131 (19%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
VF GC +R R + E
Sbjct: 57 TATVF--TQGCPWNCFYCHNRDLI----------------PVRTPGTVAWSQVRELLGRR 98
Query: 82 EKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICV 133
VLTGGE L Q + + GF + + T G +DW+ +
Sbjct: 99 RGLLDGVVLTGGEALRQDALADAAAEVRELGFAVGLHTAGAYPRRLADLLEAGLVDWVGL 158
Query: 134 SPKAGCDLKIK 144
KA + +
Sbjct: 159 DVKAMPEHYEQ 169
>gi|171185898|ref|YP_001794817.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
V24Sta]
gi|170935110|gb|ACB40371.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
Length = 573
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 33/192 (17%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+R + C C F ++Q+ ++ L+GGEP L+
Sbjct: 154 NRCNMACPVC---FANAGAAGYVYEPTIEQIEYMLRTLRAQKPWAPNAVQLSGGEPTLRD 210
Query: 100 DVP-LIQALNKRGFEIAVE--TNGTIEPPQGIDWI---------------CVSPKAGCDL 141
D+P +I+ K GF +E TNG + + K
Sbjct: 211 DLPEIIRMAKKLGF-THIEVNTNGIRLANDIEYYKALLDAGLSTLYLQFDTIDEKNEGVW 269
Query: 142 KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP-MDGPFLEENTNLAISYCFQNPK-WR 199
+ + + V EN L + + +++ + + QN R
Sbjct: 270 RHRMYHPKAYKIIKERV-IENARKLGHRSIVLVVTLARNYNDKDLGKIVDFAIQNRDVVR 328
Query: 200 LSVQTHKFIGIR 211
+I I+
Sbjct: 329 -------WINIQ 333
>gi|317484665|ref|ZP_07943566.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
gi|316924021|gb|EFV45206.1| radical SAM superfamily protein [Bilophila wadsworthia 3_1_6]
Length = 395
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + + +Q +I + + +
Sbjct: 50 CNLKCVHCYAQA-------------VDPDGKDEISTEQGKAIISDL---AAYGAPVMLFS 93
Query: 92 GGEPLLQVDVPLIQ-ALNKRGFEIAVETNG 120
GGEPL++ D+P + ++G + TNG
Sbjct: 94 GGEPLVRQDLPELASYATEKGMRAVISTNG 123
>gi|268326277|emb|CBH39865.1| conserved hypothetical protein, radical SAM superfamily [uncultured
archaeon]
Length = 395
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 22/148 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C ++ LI++ + R V T
Sbjct: 85 CNLDC--------IHC------HAFGGEASYDELTEEEGRALIDQI---AALDIRSFVFT 127
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI---CVSPKAGCD-LKIKGG 146
GGEPLL+ LI GF + + TNGT+ + + V G D + +
Sbjct: 128 GGEPLLREDLFDLIAYAKSIGFSVFIATNGTLITKEVAKLLRKYNVGVVIGLDGMNPEIH 187
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQ 174
++ V + E E L
Sbjct: 188 DSIRGVKGAFDAVIEGIENCVAENLYLH 215
>gi|58038921|ref|YP_190885.1| molybdenum cofactor biosynthesis protein A [Gluconobacter oxydans
621H]
gi|58001335|gb|AAW60229.1| Molybdenum cofactor biosynthesis protein A [Gluconobacter oxydans
621H]
Length = 351
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQG----TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL 96
DR + +C +C + + R + D++ + + R LTGGEPL
Sbjct: 33 DRCNFRCPYCMPEATYHEHFRFLEPKERLSFDEIERV---ARVAVSLGVRKLRLTGGEPL 89
Query: 97 LQVDVP--LIQALNKRGFE-IAVETNG 120
L+ +P + + + G E IA+ TNG
Sbjct: 90 LRPKLPELVARLASIEGVEDIALTTNG 116
>gi|13541763|ref|NP_111451.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
Length = 571
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 18/104 (17%)
Query: 32 CNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G +R C +C F + DQ+ ++
Sbjct: 94 CPTHCGLCVKHKSHTGLGNIVVTNRCDLSCWYC--FFYAKENEPIYEPTQDQIRMMLRRM 151
Query: 78 WITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGF-EIAVETN 119
+TGGEP ++ D + +++ + G+ + + TN
Sbjct: 152 KNEKPVGANAVQITGGEPTMRDDIIDIVRIAREEGYDHVQLNTN 195
>gi|268325167|emb|CBH38755.1| conserved hypothetical protein, radical SAM superfamily [uncultured
archaeon]
Length = 395
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 22/148 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C ++ LI++ + R V T
Sbjct: 85 CNLDC--------IHC------HAFGGEASYDELTEEEGRALIDQI---AALDIRSFVFT 127
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI---CVSPKAGCD-LKIKGG 146
GGEPLL+ LI GF + + TNGT+ + + V G D + +
Sbjct: 128 GGEPLLREDLFDLIAYAKSIGFSVFIATNGTLITKEVAKLLRKYNVGVVIGLDGMNPEIH 187
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQ 174
++ V + E E L
Sbjct: 188 DSIRGVKGAFDAVIEGIENCVAENLYLH 215
>gi|255514059|gb|EET90322.1| Radical SAM domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 621
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 32 CNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G + +R C +C F +G ++ +L +
Sbjct: 148 CPFDCGMCERHKSHTGLANVVVTNRCHLSCWYC--FFYAKEGEAIYEPSIAELDKIFYNL 205
Query: 78 WITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGF-EIAVETNGTI 122
+TGGEP + V +I+ K GF +I + T G
Sbjct: 206 RNQKPIPANALQITGGEPTMHPKIVEIIEHAKKAGFDQIQLNTTGIN 252
>gi|157147612|ref|YP_001454931.1| hypothetical protein CKO_03412 [Citrobacter koseri ATCC BAA-895]
gi|157084817|gb|ABV14495.1| hypothetical protein CKO_03412 [Citrobacter koseri ATCC BAA-895]
Length = 284
Score = 36.4 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 53/197 (26%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 11 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTIGRCNDCGECVPQCPHQALGFSAGK 65
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + + + D + ++GGE L
Sbjct: 66 VVWQADVCEQCDTC-LRVCPQQATPMAQTMSVDEVLGHIRKASPFIEGITVSGGEATTQL 124
Query: 98 QVDVPLIQALNKRG----FEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
L A+ V++NG + + V A DLK + +
Sbjct: 125 PFICALFAAIKADPQLCTLTCLVDSNGLLSETGWQKLLPVCDGAMLDLKAWDSACHQRLT 184
Query: 154 PQVNVSPENYIGFDFER 170
+ N ++ I E
Sbjct: 185 GRDNAQIKHSIRILAEH 201
>gi|297244007|ref|ZP_06927897.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8796]
gi|297178785|gb|EFH38030.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8796]
Length = 340
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|189423997|ref|YP_001951174.1| radical SAM protein [Geobacter lovleyi SZ]
gi|189420256|gb|ACD94654.1| Radical SAM domain protein [Geobacter lovleyi SZ]
Length = 436
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 29 FSGCNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLI 74
GC G ++ + +C C IQ ++D LA I
Sbjct: 83 LGGCPDDCGLCSAHQRRPTLVEIELTEKCNLRCPVCFMSAEEIQAKAAPGPDLDALAA-I 141
Query: 75 EEQWITGEKEGRYCVLTGGEPLLQ-VDVPLIQALNKRGFE-IAVETNG 120
+ LTGGEP ++ +++ + GF I V TNG
Sbjct: 142 YRSILAQTGPDTAIQLTGGEPTMRADLPEIVKLGRRIGFSAIEVNTNG 189
>gi|15927848|ref|NP_375381.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus N315]
gi|21283915|ref|NP_647003.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus MW2]
gi|49487049|ref|YP_044270.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57650853|ref|YP_187068.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus COL]
gi|87161067|ref|YP_494854.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88196183|ref|YP_501000.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148268706|ref|YP_001247649.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus JH9]
gi|150394772|ref|YP_001317447.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus JH1]
gi|151222380|ref|YP_001333202.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus str. Newman]
gi|161510463|ref|YP_001576122.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253314609|ref|ZP_04837822.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253729935|ref|ZP_04864100.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|257794612|ref|ZP_05643591.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9781]
gi|258408785|ref|ZP_05681069.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9763]
gi|258422383|ref|ZP_05685295.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9719]
gi|258439773|ref|ZP_05690519.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9299]
gi|258442671|ref|ZP_05691231.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8115]
gi|258446630|ref|ZP_05694785.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A6300]
gi|258450252|ref|ZP_05698344.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A6224]
gi|258450738|ref|ZP_05698797.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A5948]
gi|258455375|ref|ZP_05703335.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A5937]
gi|262048529|ref|ZP_06021413.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
D30]
gi|262052284|ref|ZP_06024488.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
930918-3]
gi|269203899|ref|YP_003283168.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus ED98]
gi|282893707|ref|ZP_06301939.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8117]
gi|282922136|ref|ZP_06329832.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9765]
gi|282926815|ref|ZP_06334442.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A10102]
gi|283767359|ref|ZP_06340274.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus H19]
gi|284025292|ref|ZP_06379690.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 132]
gi|294848805|ref|ZP_06789550.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9754]
gi|295404949|ref|ZP_06814762.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8819]
gi|300910930|ref|ZP_07128380.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus TCH70]
gi|304379453|ref|ZP_07362188.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|54037811|sp|P65389|MOAA_STAAW RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|54041471|sp|P65388|MOAA_STAAN RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|66773819|sp|P69848|MOAA_STAA8 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|81648816|sp|Q6G754|MOAA_STAAS RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|81693942|sp|Q5HDT9|MOAA_STAAC RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|123722359|sp|Q2FEM4|MOAA_STAA3 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|172049050|sp|A6QJA8|MOAA_STAAE RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|189028696|sp|A6U3Z2|MOAA_STAA2 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|189028697|sp|A5IV50|MOAA_STAA9 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|189028698|sp|A8Z366|MOAA_STAAT RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|52695872|pdb|1TV7|A Chain A, Structure Of The S-Adenosylmethionine Dependent Enzyme
Moaa
gi|52695873|pdb|1TV7|B Chain B, Structure Of The S-Adenosylmethionine Dependent Enzyme
Moaa
gi|52695874|pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
gi|52695875|pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
gi|109157588|pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
gi|109157589|pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
gi|13702068|dbj|BAB43360.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus N315]
gi|21205357|dbj|BAB96051.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus MW2]
gi|49245492|emb|CAG43969.1| putative molybdenum cofactor biosynthesis protein A [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57285039|gb|AAW37133.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus COL]
gi|87127041|gb|ABD21555.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87203741|gb|ABD31551.1| molybdopterin cofactor biosynthesis protein A, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147741775|gb|ABQ50073.1| GTP cyclohydrolase subunit MoaA [Staphylococcus aureus subsp.
aureus JH9]
gi|149947224|gb|ABR53160.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus JH1]
gi|150375180|dbj|BAF68440.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus str. Newman]
gi|160369272|gb|ABX30243.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253726382|gb|EES95111.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|257788584|gb|EEV26924.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9781]
gi|257840468|gb|EEV64928.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9763]
gi|257841814|gb|EEV66251.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9719]
gi|257847549|gb|EEV71551.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9299]
gi|257851792|gb|EEV75726.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8115]
gi|257854698|gb|EEV77646.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A6300]
gi|257856344|gb|EEV79253.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A6224]
gi|257861521|gb|EEV84323.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A5948]
gi|257862586|gb|EEV85354.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A5937]
gi|259159803|gb|EEW44843.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
930918-3]
gi|259163387|gb|EEW47945.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
D30]
gi|262076189|gb|ACY12162.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus ED98]
gi|282591266|gb|EFB96339.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A10102]
gi|282593604|gb|EFB98597.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9765]
gi|282763765|gb|EFC03893.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8117]
gi|283461238|gb|EFC08322.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus H19]
gi|285817930|gb|ADC38417.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
04-02981]
gi|294824184|gb|EFG40608.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9754]
gi|294969894|gb|EFG45912.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A8819]
gi|298695526|gb|ADI98748.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus ED133]
gi|300887910|gb|EFK83105.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus TCH70]
gi|304341985|gb|EFM07889.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312830616|emb|CBX35458.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315129647|gb|EFT85638.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
aureus subsp. aureus CGS03]
gi|315198198|gb|EFU28529.1| molybdenum (Mo2+) cofactor biosynthesis protein A [Staphylococcus
aureus subsp. aureus CGS01]
gi|329314952|gb|AEB89365.1| Molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus T0131]
gi|329723623|gb|EGG60152.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 21172]
gi|329730314|gb|EGG66704.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 21193]
gi|329732017|gb|EGG68372.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus 21189]
Length = 340
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|325478666|gb|EGC81777.1| 23S rRNA m2A2503 methyltransferase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 341
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 17/166 (10%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
Q C+FC + +L + + E ++ GEP
Sbjct: 105 CISSQVGCRMGCKFC----ASTKNGLVRNMTAAELIEEVYELERINGDINNIVIMGIGEP 160
Query: 96 LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
L D I + T+ I +S + IK
Sbjct: 161 LDNYDNIKK--------FIEIITD-EKGRNLSHRSITLSTSGLAPMIIKLADS----GLD 207
Query: 156 VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKWRLS 201
+N++ + D +R P+ + A Y K R+S
Sbjct: 208 INLALSLHYADDKKRRQFMPVSNKYSIRELMKATDYYLDKTKRRVS 253
>gi|325294473|ref|YP_004280987.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064921|gb|ADY72928.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 384
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CR ++ G ++ + L+++ + VLT
Sbjct: 20 CNLNC--------IHCR-----SSSTMESEQGDFSFEDGKKLMDDIAKISKPT---IVLT 63
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPLL+ D L ++GF + + TNG GI + +S
Sbjct: 64 GGEPLLREDVWDLAAYGTEKGFRMCIATNGVLVDDEVCKEMKRVGIKMVSLSLDGSTAEI 123
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDF 168
++ + V + E + D
Sbjct: 124 HDDFRKQPGAYEGVMKAAELFKKHDI 149
>gi|228911538|ref|ZP_04075328.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis IBL 200]
gi|228848102|gb|EEM92966.1| Anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus thuringiensis IBL 200]
Length = 146
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 25/108 (23%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC C C G +V ++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HHCLGCHNP-KSWNLYNGTEMSVKEIIK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVET 118
I +GG+P Q + +A+ + + T
Sbjct: 52 EI------STNPLTDVTFSGGDPFFQAIEVKEVAKAVKSLNKNLWIYT 93
>gi|168206415|ref|ZP_02632420.1| putative heme biosynthesis protein [Clostridium perfringens E str.
JGS1987]
gi|170662102|gb|EDT14785.1| putative heme biosynthesis protein [Clostridium perfringens E str.
JGS1987]
Length = 380
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 33 NLWSGREQDR-LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
LW G + + +C C KG Y++D + +++ E + + L+
Sbjct: 49 PLWVGFKITPICNMKCEHC------WADLKGKEYSLDNIKKALDKL---SEIQILHLTLS 99
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGID 129
GGEP ++ D + ++ + + TNG++
Sbjct: 100 GGEPFIRNDWEEIFSYAKEKRMCLEIFTNGSLINEDICK 138
>gi|310778923|ref|YP_003967256.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
gi|309748246|gb|ADO82908.1| Radical SAM domain protein [Ilyobacter polytropus DSM 2926]
Length = 287
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 22/103 (21%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
CNL C FC + + +D ++ E + +
Sbjct: 15 CNLS-----------CHFC------PKSKRKLEYMKLDSFGKILREIKPFTDYIYLHVK- 56
Query: 91 TGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
GEPLL + GF++ + TNG+ G +
Sbjct: 57 --GEPLLHPQLEEFLDLAYVYGFKVNITTNGSFIKGTGDKLLT 97
>gi|302344373|ref|YP_003808902.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
gi|301640986|gb|ADK86308.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
Length = 394
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + A + LI++ + + +
Sbjct: 50 CNLRCAHCYAQAKA-------------TPNADELTTAEGKRLIDDL---ADYGSPVMLFS 93
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GGEPL + D+P L + +G + TNG
Sbjct: 94 GGEPLARPDLPELARYAVAKGMRAVISTNG 123
>gi|169830546|ref|YP_001716528.1| radical SAM domain-containing protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169637390|gb|ACA58896.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 348
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 31/119 (26%), Gaps = 17/119 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL RFC + G + I E
Sbjct: 82 GCNLHC-----------RFC----QNWEIAHGEPSTIRVTPAKIVELARRQNHHCIGIAY 126
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EP++ + + G + + TNG IE + D+K
Sbjct: 127 TYSEPVVWYEFVYETAVQAREAGLKNVLVTNGFIELEPLEKLLPYVDAMNIDVKAFTDD 185
>gi|152991532|ref|YP_001357254.1| heme d1 biosynthesis protein NirJ [Nitratiruptor sp. SB155-2]
gi|151423393|dbj|BAF70897.1| heme d1 biosynthesis protein NirJ [Nitratiruptor sp. SB155-2]
Length = 367
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + ++ I + + ++ + +
Sbjct: 33 CNLSC--------LHC------YSKAGLEAQDHLTTQKIMQTIPQL---KKGGVKFVIFS 75
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPL + D+ + +A+ + G + TNG + I
Sbjct: 76 GGEPLTRKDIFDIAEAMREEGIATYLSTNGLYIHHSNVKRI 116
>gi|268323224|emb|CBH36812.1| molybdenum cofactor biosynthesis protein A [uncultured archaeon]
Length = 324
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE--KEGRYCV 89
CNL C +C +G + + A+LI R
Sbjct: 34 CNLN-----------CIYCHN-----EGEGRDKVKAEISAELIIAIARVASTYFGIRRIK 77
Query: 90 LTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTI 122
+GGEPL++ ++ + +I+V TNG
Sbjct: 78 FSGGEPLMRADLAEIVHGIRDYEDDISVTTNGIY 111
>gi|253566416|ref|ZP_04843869.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265767276|ref|ZP_06094942.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|251944588|gb|EES85063.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263252581|gb|EEZ24093.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301165287|emb|CBW24858.1| putative radical SAM-family protein [Bacteroides fragilis 638R]
Length = 361
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CR + ++ +++ ++T
Sbjct: 43 CNLACKHCGSD----CR---------KMSEQKDMPAADFLQVVDSITPHVNPNEVNIIIT 89
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
GGEPL++ D + AL ++G+ + +NG
Sbjct: 90 GGEPLMRDDLEEVGMALYRKGYPWGIVSNGLY 121
>gi|307705441|ref|ZP_07642296.1| hypothetical protein ydeM [Streptococcus mitis SK597]
gi|307620976|gb|EFO00058.1| hypothetical protein ydeM [Streptococcus mitis SK597]
Length = 352
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + + + Y+ ++ + I ++ + + T
Sbjct: 3 CNLT-----------CSYCFENDKDRKPSLSSEYDGKKIVNFILDELNFKKYKSLDICFT 51
Query: 92 GGEPL-----LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133
GGEPL ++ + + TNGTI + + ++
Sbjct: 52 GGEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTIFTNKIMSFLDC 98
>gi|53715771|ref|YP_101763.1| putative heme biosynthesis protein [Bacteroides fragilis YCH46]
gi|60683702|ref|YP_213846.1| putative radical SAM-family protein [Bacteroides fragilis NCTC
9343]
gi|52218636|dbj|BAD51229.1| putative heme biosynthesis protein [Bacteroides fragilis YCH46]
gi|60495136|emb|CAH09957.1| putative radical SAM-family protein [Bacteroides fragilis NCTC
9343]
Length = 361
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CR + ++ +++ ++T
Sbjct: 43 CNLACKHCGSD----CR---------KMSEQKDMPAADFLQVVDSITPHVNPNEVNIIIT 89
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTI 122
GGEPL++ D + AL ++G+ + +NG
Sbjct: 90 GGEPLMRDDLEEVGMALYRKGYPWGIVSNGLY 121
>gi|15925258|ref|NP_372792.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus Mu50]
gi|156980583|ref|YP_001442842.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus Mu3]
gi|255007046|ref|ZP_05145647.2| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|24211997|sp|Q931G4|MOAA_STAAM RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|166217891|sp|A7X5J1|MOAA_STAA1 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|14248041|dbj|BAB58430.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus Mu50]
gi|156722718|dbj|BAF79135.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus Mu3]
Length = 340
Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|289207329|ref|YP_003459395.1| molybdenum cofactor biosynthesis protein A [Thioalkalivibrio sp.
K90mix]
gi|288942960|gb|ADC70659.1| molybdenum cofactor biosynthesis protein A [Thioalkalivibrio sp.
K90mix]
Length = 334
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 22/179 (12%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
R S DR +C +C + + + + + G R
Sbjct: 22 VRLS--------VTDRCDLRCFYC-MPKGFRDFEEPEHWLSFEEIERV--MGAFGRLGTR 70
Query: 87 YCVLTGGEPLLQVDVPLIQALNKR--GF-EIAVETNGTIE-------PPQGIDWICVSPK 136
LTGGEPL++ ++P + A G +I++ TN T G+ I VS
Sbjct: 71 RVRLTGGEPLVRKNLPDLAARLNALPGIDDISLSTNATRMARHAQELKDAGVARINVSLD 130
Query: 137 AGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ K KL + G D + ++ M G E + +C ++
Sbjct: 131 SLKPEVFKEITGGKLEKVLDGLMASKAAGLDPIKINMVVMGGINEPE-VEDMVDFCIEH 188
>gi|167037727|ref|YP_001665305.1| radical SAM protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167040388|ref|YP_001663373.1| radical SAM protein [Thermoanaerobacter sp. X514]
gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|320116142|ref|YP_004186301.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|205829918|sp|B0KA06|RLMN_THEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|205829919|sp|B0K1Y9|RLMN_THEPX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA m2A2503 methyltransferase
gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 342
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 15/154 (9%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
RF N Q + +C FC G K ++ D + K
Sbjct: 98 RFG--NTACVSTQVGCNMRCSFC----ASAIGGKVRDLKASEMVDQVMAIDSDYGKISNI 151
Query: 88 CVLTGGEPLLQVDVPLIQAL-----NKRGF---EIAVETNGTIEPPQGIDWICVSPKAGC 139
++ GEP D + + G I + T G + +
Sbjct: 152 VLMGSGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSI 211
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
L EL+ +N + ++ +
Sbjct: 212 SLHAPN-DELRTQLMPINKAYPLEELMKACKYYV 244
>gi|258422713|ref|ZP_05685618.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9635]
gi|257847124|gb|EEV71133.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
A9635]
Length = 340
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|218676233|ref|YP_002395052.1| Pyruvate formate-lyase activating enzyme [Vibrio splendidus LGP32]
gi|218324501|emb|CAV25965.1| Pyruvate formate-lyase activating enzyme [Vibrio splendidus LGP32]
Length = 295
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 42/198 (21%)
Query: 9 IFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD--------------------------- 41
F + G G R+ +F GCN +
Sbjct: 20 TFSCVDGPGN---RLVLF--LQGCNFDCITCHNPHTINHCNHCGDCVSGCPSSALSLIEG 74
Query: 42 ---RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
C CD + ++D + E + ++GGE +Q
Sbjct: 75 KVKWDPLACTNCDQCVDICDHKSSPKITTMTVSD-VLELVRHNQFFLSGITVSGGEATMQ 133
Query: 99 V--DVPLIQALNK----RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
+ V L QA+ +++NG++ + A DLK + + +
Sbjct: 134 LPFIVELFQAIKSDPQLAHLTCFIDSNGSLTQQGWDKVLPYLDGAMIDLKSWQSETHQWL 193
Query: 153 FPQVNVSPENYIGFDFER 170
+ N I + ++
Sbjct: 194 VGRGNHRVFETINYLADK 211
>gi|171185823|ref|YP_001794742.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
V24Sta]
gi|170935035|gb|ACB40296.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
Length = 373
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F F+GCN +C +C + G + LA + Q E+
Sbjct: 153 TIF--FAGCNF-----------RCVYCQNWDISQHPEAGVEVTSESLAAI---QIGLREE 196
Query: 84 EGRYCVLTGGEPL 96
R GGEP
Sbjct: 197 GARNINWVGGEPT 209
>gi|49186401|ref|YP_029653.1| hypothetical protein BAS3397 [Bacillus anthracis str. Sterne]
gi|254686169|ref|ZP_05150028.1| adical activating [Bacillus anthracis str. CNEVA-9066]
gi|254738642|ref|ZP_05196345.1| adical activating [Bacillus anthracis str. Western North America
USA6153]
gi|254744800|ref|ZP_05202478.1| adical activating [Bacillus anthracis str. Kruger B]
gi|49180328|gb|AAT55704.1| adical activating [Bacillus anthracis str. Sterne]
Length = 99
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VDGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|187924899|ref|YP_001896541.1| molybdenum cofactor biosynthesis protein A [Burkholderia
phytofirmans PsJN]
gi|187716093|gb|ACD17317.1| molybdenum cofactor biosynthesis protein A [Burkholderia
phytofirmans PsJN]
Length = 369
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + ++ + IE + LTGGEPLL+
Sbjct: 45 DRCNFRCVYCMPRAVFDKDYTFLPHSALLSFEEIERLARLFVAHGVEKIRLTGGEPLLRK 104
Query: 100 DVPLIQALNK-------RGFEIAVETNGT-------IEPPQGIDWICVSPKAGCDLKIKG 145
++ + R ++ + TNG+ G+ + VS A D +
Sbjct: 105 NLEFLIERLAQLTTPAGRPLDLTLTTNGSLLERKARSLKDAGLTRVTVSLDALDDTLFRR 164
Query: 146 GQELKLVFPQV 156
+ V
Sbjct: 165 MNDADFAVGDV 175
>gi|319638107|ref|ZP_07992871.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa C102]
gi|317400752|gb|EFV81409.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa C102]
Length = 268
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 17/147 (11%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGI-QGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
GC +C +C + +V + + G
Sbjct: 47 LQGC-----------LMRCLYCHNRDTWDLHTEQAQELDVATVMKQVMTYRHYLRATGGG 95
Query: 88 CVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
TGGEPLLQ + A + +++NG D I +L +
Sbjct: 96 VTATGGEPLLQYEFVRDWFTACREHDIHTCLDSNG---YALHYDSILNDLLDHTNLVMLD 152
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFS 172
+++ +V V N F R+
Sbjct: 153 LKQIDPEIHKVLVGIPNTKTLKFARYL 179
>gi|237714068|ref|ZP_04544549.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. D1]
gi|262407119|ref|ZP_06083668.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. 2_1_22]
gi|294644009|ref|ZP_06721789.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides ovatus SD CC 2a]
gi|294810385|ref|ZP_06769043.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides xylanisolvens SD CC 1b]
gi|229445892|gb|EEO51683.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. D1]
gi|262355822|gb|EEZ04913.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. 2_1_22]
gi|292640646|gb|EFF58884.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides ovatus SD CC 2a]
gi|294442412|gb|EFG11221.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides xylanisolvens SD CC 1b]
Length = 152
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 22/109 (20%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG +GC S C C G G +++
Sbjct: 12 VDGEGIR-----YSIYLAGC-----------SHHCPGCHNPESWNPG-AGEELTEEKIQS 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVET 118
+I E +GG+P + L + + G + T
Sbjct: 55 IIREIK--ANPLLDGVTFSGGDPFFHPEAFLLLLKRVKEETGMNVWCYT 101
>gi|258514536|ref|YP_003190758.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257778241|gb|ACV62135.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 396
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 19/91 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVL 90
CNL C + K G + + I++ E + +
Sbjct: 47 CNLKC--------IHC------YSNSDNKKYEGELTTAEAKNFIKDL---AEFKVPVILF 89
Query: 91 TGGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
+GGEPL++ D L + G + TNG
Sbjct: 90 SGGEPLIRKDFFELAACASDLGIRCTISTNG 120
>gi|82751856|ref|YP_417597.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
RF122]
gi|123741049|sp|Q2YYS8|MOAA_STAAB RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|82657387|emb|CAI81829.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
RF122]
Length = 340
Score = 36.4 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|299148082|ref|ZP_07041145.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. 3_1_23]
gi|298514265|gb|EFI38151.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacteroides sp. 3_1_23]
Length = 152
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 22/109 (20%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG +GC S C C G G +++
Sbjct: 12 VDGEGIR-----YSIYLAGC-----------SHHCPGCHNPESWNPG-AGEELTEEKIQS 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQV---DVPLIQALNKRGFEIAVET 118
+I E +GG+P + L + + G + T
Sbjct: 55 IIREIK--ANPLLDGVTFSGGDPFFHPEEFLLLLKRVKEETGMNVWCYT 101
>gi|91201993|emb|CAJ75053.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 303
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 24 AVFCRF-SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
+F S CNL R+ + + L +++ + G
Sbjct: 11 TIFISLLSDCNLACDHCYARIY---------------KEKKILPGEMLENILLQAESLGS 55
Query: 83 KEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
+LTGGEP+L ++ I + +K F I + TNGT+
Sbjct: 56 F---IFMLTGGEPMLYPNLMEILSGHKNSFFILI-TNGTM 91
>gi|242398619|ref|YP_002994043.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
739]
gi|242265012|gb|ACS89694.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
739]
Length = 301
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 47/169 (27%), Gaps = 58/169 (34%)
Query: 2 KLYSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLS-----------AQCRFC 50
K Y+I G G +F GC L + +C C
Sbjct: 10 KRYAIH------DGPGIRT---TIFM--KGCPLSCWWCHNPEGVSPKPELMYFEFKCIHC 58
Query: 51 DT-------DFVGIQGTK---------------------------GGRYNVDQLADLIEE 76
T + + + G V++L IE+
Sbjct: 59 HTCVKVCPENAISFDENETQQIDREKCTGCGVCASACPTSALRLVGRVITVEELLTEIEK 118
Query: 77 QWITGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIE 123
+ G +GGEPL Q V ++ L KR V+T+G
Sbjct: 119 DIKLYDDSGGGVTFSGGEPLSQPKFLVESLKELKKRYIHTTVDTSGYAP 167
>gi|228985250|ref|ZP_04145415.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228774545|gb|EEM22946.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 337
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + D IE + LTGGEPLL+
Sbjct: 22 DRCNFRCTYCMPAEVFGADYAFLQEEFLLTFDEIERLARLFISMGVNKIRLTGGEPLLRK 81
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+P + + G + I + TNG
Sbjct: 82 DLPKLIERLAKIEGIKDIGLTTNGIH 107
>gi|159904713|ref|YP_001548375.1| molybdenum cofactor biosynthesis protein A [Methanococcus
maripaludis C6]
gi|226704823|sp|A9A661|MOAA_METM6 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|159886206|gb|ABX01143.1| molybdenum cofactor biosynthesis protein A [Methanococcus
maripaludis C6]
Length = 298
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G G + D++ +++ E R ++
Sbjct: 20 CNLK-----------CFYCH--KEGRNEEHGKLMSADEIVKIVKSSL---EFGVRKIKIS 63
Query: 92 GGEPLLQVDVPLIQALNKRG--FEIAVETNG 120
GGEPLL+ D+P I K +I++ TNG
Sbjct: 64 GGEPLLRTDLPKIIENIKDDQIKDISLTTNG 94
>gi|145592010|ref|YP_001154012.1| radical SAM domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145283778|gb|ABP51360.1| Radical SAM domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 578
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+R + C C F ++Q+ ++ ++GGEP L+
Sbjct: 160 NRCNMACPVC---FANAGAAGYVYEPTLEQIEYMLRTLRAQKPWPPNAIQISGGEPTLRD 216
Query: 100 DVP-LIQALNKRGF-EIAVETNG 120
D+P +++ K GF I + TNG
Sbjct: 217 DLPEIVRMAKKLGFTHIEINTNG 239
>gi|313149231|ref|ZP_07811424.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313137998|gb|EFR55358.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 346
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
C L + CR + ++ + +I+ ++T
Sbjct: 24 CTLRCNLACKHCGSDCR---------KMSEQKDMPAEDFLRVIDSITPHVNPNEVNIIIT 74
Query: 92 GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTI 122
GGEPL++ D+ + AL +RG+ + +NG
Sbjct: 75 GGEPLMRNDLEKVGLALYRRGYPWGIVSNGLY 106
>gi|296275048|ref|ZP_06857555.1| molybdenum cofactor biosynthesis protein A [Staphylococcus aureus
subsp. aureus MR1]
Length = 340
Score = 36.4 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKG-GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ + E + +TGGEPL++
Sbjct: 22 DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRR 81
Query: 100 DVPLIQALNKR--GFE-IAVETNG 120
D+ ++ A + G E I + TNG
Sbjct: 82 DLDVLIAKLNQIDGIEDIGLTTNG 105
>gi|254511606|ref|ZP_05123673.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11]
gi|221535317|gb|EEE38305.1| radical SAM domain protein [Rhodobacteraceae bacterium KLH11]
Length = 317
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
LW + +C C ++ T D++ D +++ R T
Sbjct: 37 LWFNTG-TLCNIECVNC---YIASSPTNDALVYITTDEVRDYLDQ-IQERNWPIREIGFT 91
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPP 125
GGEP + + + +A +RG+E+ + TN +
Sbjct: 92 GGEPFMNPQMIDMTRAALERGYEVLILTNAMLPMM 126
>gi|261404960|ref|YP_003241201.1| Radical SAM domain-containing protein [Paenibacillus sp. Y412MC10]
gi|261281423|gb|ACX63394.1| Radical SAM domain protein [Paenibacillus sp. Y412MC10]
Length = 291
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + N ++ D +
Sbjct: 15 CNL-----------ACTFC--------PPTERKANFIKVEDFARRLDEIKPHTSYIYLHV 55
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
GEPLL L+ +++GF++ + TNG
Sbjct: 56 KGEPLLHPKIDELLDISHEKGFKVNITTNG 85
>gi|229542808|ref|ZP_04431868.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus coagulans 36D1]
gi|229327228|gb|EEN92903.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Bacillus coagulans 36D1]
Length = 158
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 25/104 (24%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG +F F+GC + C+ C G V+ +
Sbjct: 12 VDGEGLRT---VIF--FAGCPHF-----------CKGCHNPRSW-NIHNGTEMPVEDVVA 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLL--QVDVPLIQALNKRGFEI 114
+ +GGEP Q + + L G I
Sbjct: 55 EV------AGNPLTDVTFSGGEPFFQAQEVCEVAKRLKALGKNI 92
>gi|293401520|ref|ZP_06645663.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305158|gb|EFE46404.1| pyruvate formate-lyase activating enzyme [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 298
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETN 119
G + + + + +GGEP +Q ++Q G AVET
Sbjct: 101 GEDMESKAILHEVMKDKDYYDMSHGGVTFSGGEPFVQVTSLCEILQEAKALGLHTAVETT 160
Query: 120 GTIE 123
G
Sbjct: 161 GNYP 164
>gi|291326444|ref|ZP_06124517.2| molybdenum cofactor biosynthesis protein A [Providencia rettgeri
DSM 1131]
gi|291314204|gb|EFE54657.1| molybdenum cofactor biosynthesis protein A [Providencia rettgeri
DSM 1131]
Length = 372
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D + +C +C + GR+ L ++ E +TGGEP ++ D
Sbjct: 67 DVCNFRCTYC----LPDGYKPSGRHEFLTLDEIRRISTAFAELGTEKVRITGGEPTMRKD 122
Query: 101 VPLIQALNKRG---FEIAVETNGTIEPPQGIDWI 131
I A +IAV TNG +W
Sbjct: 123 FSDIIAAINENESIKKIAVTTNGYRMARDVHEWK 156
>gi|198284278|ref|YP_002220599.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667275|ref|YP_002426939.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248799|gb|ACH84392.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519488|gb|ACK80074.1| molybdenum cofactor biosynthesis protein A [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 342
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DV 101
+ +C +C + G + + D + I R+ TGGEPLL +
Sbjct: 34 CNFRCSYC-SPEEGTPFFVRKDHLQAEEYDRLIR--IFSGLGVRHIRFTGGEPLLHPRIL 90
Query: 102 PLIQALNKRGF-EIAVETNG 120
+ + G +I++ TNG
Sbjct: 91 SFVGFARRHGVGKISISTNG 110
>gi|21228570|ref|NP_634492.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
gi|20907062|gb|AAM32164.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
Length = 217
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 41 DRLSAQCRFCDTDFV-GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQ 98
+R SA C FC +F G+ G ++IE + R V TG GEP L+
Sbjct: 29 NRCSADCIFCIRNFADGVYGYNLRLSKEPSTEEIIEALEGLDLSKYREIVFTGLGEPTLR 88
Query: 99 VD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWI----------CVSPKAGCDLKIKGG 146
+D + + + L +G + ++TNG + VS + + K
Sbjct: 89 LDVVLAVTRWLKNQGLRVRLDTNGHAALINPKLDVIAELKKAGLDSVSVSLNAESEEKYN 148
Query: 147 QELKLVFPQVNVSPENYIG 165
+ + V + +++
Sbjct: 149 KLCRPVHKNAYRAMLDFVR 167
>gi|261417420|ref|YP_003251103.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373876|gb|ACX76621.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327495|gb|ADL26696.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 390
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL R A + + ++ LI++ + + +
Sbjct: 47 CNLKCVHCYARSEAI------KY-------QNELSHEEGIKLIDQL---ADFHVPVILFS 90
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQ 126
GGEPLL+ D L +G + TNGT P
Sbjct: 91 GGEPLLRPDFFELANYAASKGIRPTISTNGTCITPD 126
>gi|225024573|ref|ZP_03713765.1| hypothetical protein EIKCOROL_01448 [Eikenella corrodens ATCC
23834]
gi|224942724|gb|EEG23933.1| hypothetical protein EIKCOROL_01448 [Eikenella corrodens ATCC
23834]
Length = 184
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
FSGC L +C+ C + +G G + L +E
Sbjct: 26 FSGCPL-----------RCKGCHSADSW-KGGLGSELTAEYLQSRLERYRGL----ISCV 69
Query: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
+ GGE L + +PL+ + + G + T G + I + P+ + E
Sbjct: 70 LFMGGEWLPEKLLPLLAQVREAGLNSCLYT-GLEQDELERTSIAIIPQLTYLKTGRWKME 128
Query: 149 L 149
L
Sbjct: 129 L 129
>gi|224541633|ref|ZP_03682172.1| hypothetical protein CATMIT_00805 [Catenibacterium mitsuokai DSM
15897]
gi|224525424|gb|EEF94529.1| hypothetical protein CATMIT_00805 [Catenibacterium mitsuokai DSM
15897]
Length = 372
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN+ L+ ++ G + + ++ ++ E + +LT
Sbjct: 35 CNMNCDMCYVHLT---------HKQLEEAGGRIHTGKEWLEIGKQMV---ENGTLFLLLT 82
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETN 119
GGEPLL D + L K G I + TN
Sbjct: 83 GGEPLLHPDFKEIYLGLKKMGIVITINTN 111
>gi|212694739|ref|ZP_03302867.1| hypothetical protein BACDOR_04271 [Bacteroides dorei DSM 17855]
gi|237710987|ref|ZP_04541468.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
gi|212662718|gb|EEB23292.1| hypothetical protein BACDOR_04271 [Bacteroides dorei DSM 17855]
gi|229454831|gb|EEO60552.1| radical SAM domain-containing protein [Bacteroides sp. 9_1_42FAA]
Length = 368
Score = 36.4 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 50 CDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
CD F+ + + R+ + Q D E+ + + +LTGGEP+L L
Sbjct: 39 CDMCFIRTERSVVERHGGLSPLQQWLDWAEQLQ---DMGTLFILLTGGEPMLYPHFKELY 95
Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWI 131
L + GF + + TNGT+ + + +
Sbjct: 96 TRLREMGFILTLNTNGTLIDNEMVRIL 122
>gi|328555376|gb|AEB25868.1| molybdenum cofactor biosynthesis protein A [Bacillus
amyloliquefaciens TA208]
gi|328913747|gb|AEB65343.1| molybdenum cofactor biosynthesis protein A [Bacillus
amyloliquefaciens LL3]
Length = 341
Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQ 98
DR + +C +C + + + +E G LTGGEPL++
Sbjct: 25 DRCNFRCTYCMPAELFGPDYPFLQKTELLSFEELERLAKLFVGRFGVEKIRLTGGEPLMR 84
Query: 99 VDVPLIQALNKR--GFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGGQ- 147
D+P + R G + IA+ TNG G+ + VS + D + K
Sbjct: 85 KDMPELIRKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVSLDSLEDERFKAING 144
Query: 148 ---ELKLVFPQVNVSPENYIGFDFE 169
+ V + + E +G
Sbjct: 145 RGVSVNKVLEGIEAAKEAGLGVKIN 169
>gi|308175399|ref|YP_003922104.1| molybdenum cofactor biosynthesis protein A [Bacillus
amyloliquefaciens DSM 7]
gi|307608263|emb|CBI44634.1| molybdenum cofactor biosynthesis protein A [Bacillus
amyloliquefaciens DSM 7]
Length = 344
Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQ 98
DR + +C +C + + + +E G LTGGEPL++
Sbjct: 25 DRCNFRCTYCMPAELFGPDYPFLQKTELLSFEELERLAKLFVGRFGVEKIRLTGGEPLMR 84
Query: 99 VDVPLIQALNKR--GFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGGQ- 147
D+P + R G + IA+ TNG G+ + VS + D + K
Sbjct: 85 KDMPELIRKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVSLDSLEDERFKAING 144
Query: 148 ---ELKLVFPQVNVSPENYIGFDFE 169
+ V + + E +G
Sbjct: 145 RGVSVNKVLEGIEAAKEAGLGVKIN 169
>gi|257388031|ref|YP_003177804.1| radical SAM protein [Halomicrobium mukohataei DSM 12286]
gi|257170338|gb|ACV48097.1| Radical SAM domain protein [Halomicrobium mukohataei DSM 12286]
Length = 407
Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 34 LWSGREQDRLSAQCR-FCDTDFVGIQGT-KGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
+W+ +Q C +CD + G + + +++ + + +
Sbjct: 42 VWNVTKQ------CNLYCDHCYAAADTEVADGELSTAEGKAMLDGL---ADYGVPVVLFS 92
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNG 120
GGEPL++ D+ + A ++RG + TNG
Sbjct: 93 GGEPLVRDDLEELIAYADERGVRPVLSTNG 122
>gi|15644300|ref|NP_229352.1| pyruvate formate-lyase activating enzyme, putative [Thermotoga
maritima MSB8]
gi|148270370|ref|YP_001244830.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
gi|281412676|ref|YP_003346755.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
gi|4982119|gb|AAD36618.1|AE001801_5 pyruvate formate-lyase activating enzyme, putative [Thermotoga
maritima MSB8]
gi|147735914|gb|ABQ47254.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
gi|281373779|gb|ADA67341.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
Length = 331
Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 18/100 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN G FC + + R +QL + + + +
Sbjct: 80 TFGCNFKCG-----------FCQNWEISQAKPETKRVTPEQLVKIAQ-----MNRNSKGI 123
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
T EPL+ + + + + G + TNG I
Sbjct: 124 AFTYNEPLVWYEFVLDTSRVAVREGMYCVLVTNGFINEEP 163
>gi|323705502|ref|ZP_08117077.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535404|gb|EGB25180.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 343
Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 38/152 (25%), Gaps = 18/152 (11%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
N Q + +C FC G K ++ D + K ++
Sbjct: 100 NTSCISTQVGCNMRCSFC----ASGIGGKVRNLKASEMVDEVLIMNKDYGKISNIVLMGS 155
Query: 93 GEPLLQVDVPLIQALNKRG--------FEIAVETNGTIEPPQGID------WICVSPKAG 138
GEP D + I + T G + + +S A
Sbjct: 156 GEPFDNYDEVMKFIKIVNNPFGMGIGVRHITISTCGIVPKIYKFADEGLGVNLSISLHAP 215
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFER 170
D + V+P ++ D
Sbjct: 216 TDDLRSQLMPINKVYPIKDLIDACRYYIDKTH 247
>gi|265750577|ref|ZP_06086640.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263237473|gb|EEZ22923.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 368
Score = 36.4 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 50 CDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD-VPLI 104
CD F+ + + R+ + Q D E+ + + +LTGGEP+L L
Sbjct: 39 CDMCFIRTERSVVERHGGLSPLQQWLDWAEQLQ---DMGTLFILLTGGEPMLYPHFKELY 95
Query: 105 QALNKRGFEIAVETNGTIEPPQGIDWI 131
L + GF + + TNGT+ + + +
Sbjct: 96 TRLREMGFILTLNTNGTLIDNEMVRIL 122
>gi|284162371|ref|YP_003400994.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
gi|284012368|gb|ADB58321.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
Length = 462
Score = 36.4 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C+ C + N + +E I + +
Sbjct: 121 CNLK-----------CKHC---YSTAGKPWKDELNTQEALRAME---ILADAGVTAIAFS 163
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPL++ D L +A+ G +AV TNG
Sbjct: 164 GGEPLIRKDFFELAKAVRDHGMFVAVATNG 193
>gi|228920856|ref|ZP_04084195.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228838787|gb|EEM84089.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 337
Score = 36.0 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + D IE + LTGGEPLL+
Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEFLLTFDEIERLARLFISMGVNKIRLTGGEPLLRK 81
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+P + + G + I + TNG
Sbjct: 82 DLPQLIARLTKLEGLKDIGLTTNGIH 107
>gi|229132987|ref|ZP_04261829.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
BDRD-ST196]
gi|228650484|gb|EEL06477.1| Molybdenum cofactor biosynthesis protein A [Bacillus cereus
BDRD-ST196]
Length = 337
Score = 36.0 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + D IE + LTGGEPLL+
Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEFLLTFDEIERLARLFISMGVNKIRLTGGEPLLRK 81
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+P + + G + I + TNG
Sbjct: 82 DLPKLIARLTKLEGLKDIGLTTNGIH 107
>gi|163939949|ref|YP_001644833.1| molybdenum cofactor biosynthesis protein A [Bacillus
weihenstephanensis KBAB4]
gi|163862146|gb|ABY43205.1| molybdenum cofactor biosynthesis protein A [Bacillus
weihenstephanensis KBAB4]
Length = 337
Score = 36.0 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + D IE + LTGGEPLL+
Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEEFLLTFDEIERLARLFISMGVNKIRLTGGEPLLRK 81
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+P + + G + I + TNG
Sbjct: 82 DLPKLIARLTKLEGLKDIGLTTNGIH 107
>gi|13470752|ref|NP_102321.1| molybdenum cofactor biosynthesis protein A [Mesorhizobium loti
MAFF303099]
gi|24212004|sp|Q98MK6|MOAA_RHILO RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|14021495|dbj|BAB48107.1| molybdopterin biosynthetic protein A [Mesorhizobium loti
MAFF303099]
Length = 331
Score = 36.0 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 20/164 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR +C +C + + ++ L +L + EK R LTGGEPL++ +
Sbjct: 20 DRCDFRCTYC----MAEDMAFLPKKDLLSLEELDRLCSVFIEKGVRRLRLTGGEPLVRKN 75
Query: 101 VPLIQALNKRGF------EIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKGG- 146
+ + R E+ + TNG+ G+ I VS K
Sbjct: 76 IMHLVRQLSRHLDSGALEELTLTTNGSQLSRFAAELADCGVKRINVSLDTLDADKFHQIT 135
Query: 147 --QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
L V ++ + + +L+ + L + A
Sbjct: 136 RWGHLDKVMQGIDAAQAAGLKVKLNAVALKDFNDAELPDMMRWA 179
>gi|329911258|ref|ZP_08275466.1| Coenzyme PQQ synthesis protein E [Oxalobacteraceae bacterium
IMCC9480]
gi|327545979|gb|EGF31067.1| Coenzyme PQQ synthesis protein E [Oxalobacteraceae bacterium
IMCC9480]
Length = 375
Score = 36.0 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV 101
R C FC V + + + +++E G + +GGEPLL+ D+
Sbjct: 18 RCPLHCAFCYNP-VNYESVR-NELTTAEWFKVMQEARALGAVQ---LGFSGGEPLLRDDL 72
Query: 102 P-LIQALNKRGFEIAVETNG 120
L+ ++ GF + T+G
Sbjct: 73 EALVTEAHRLGFYTNLITSG 92
>gi|225572370|ref|ZP_03781234.1| hypothetical protein RUMHYD_00664 [Blautia hydrogenotrophica DSM
10507]
gi|225040137|gb|EEG50383.1| hypothetical protein RUMHYD_00664 [Blautia hydrogenotrophica DSM
10507]
Length = 364
Score = 36.0 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 46 QCRF-CDTDFVGIQGTKGGRY----NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
+C F C +V ++ + RY + + + E+ G + +TGGEPL+ +
Sbjct: 43 RCNFDCRMCYVHLKPEEMPRYGRELSAKEWLKVAEDARAAG---TVWLCVTGGEPLMHPE 99
Query: 101 VPLIQALNK-RGFEIAVETN 119
I GF I ++TN
Sbjct: 100 FETIWRGLTGMGFFITLQTN 119
>gi|284161695|ref|YP_003400318.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
gi|284011692|gb|ADB57645.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
Length = 309
Score = 36.0 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 39/192 (20%)
Query: 31 GCNLWSGREQDRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWI-----TGEKE 84
GCNL +C + K + + L +E
Sbjct: 56 GCNLHCKYC---------WCWKMRYHSEDIKKSPKDVLRDLECRFDEVVKDKFVSKKGYR 106
Query: 85 GRYCVLTGGEPLLQVDVPLI------QALNKRGFEIAVETNGTI---------EPPQGID 129
+TG EP LQ D ++ R F++ +ETNG + +
Sbjct: 107 IGVIRITGNEPSLQWDHVKEVLKLIDRSERLRSFKVIIETNGVAFAKMDVNGLDNLEINI 166
Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVS--PENYIGFDFERFSLQPMDGPFLEENTNL 187
I VS K + + +K + + + + + ++ S+ P+ G EN
Sbjct: 167 DIDVSFKGVNYDQFEWLSSVKREYFRYQIEGFVKLFDYYEGTNVSVNPVLGINHAENY-- 224
Query: 188 AIS-----YCFQ 194
+ Y
Sbjct: 225 CVWKRGKKYVMD 236
>gi|146320554|ref|YP_001200265.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis
98HAH33]
gi|145691360|gb|ABP91865.1| Pyruvate-formate lyase-activating enzyme [Streptococcus suis
98HAH33]
Length = 258
Score = 36.0 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 31/170 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKRKPEPMLDAVSKKMTI 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G +VD + + + E+ G L+GGE Q + ++ + G A+ET
Sbjct: 62 MGEEKSVDDIISEVMKDIDFYEESGGGLTLSGGEIFAQYEFAKAILMEAKRHGLHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+E + +D I DLK + V N I + F
Sbjct: 122 TAFVEHHKFVDLIQYVDFIYTDLKHYNTISHRKVTGVNNNLIIQNIQYAF 171
>gi|83590234|ref|YP_430243.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
gi|83573148|gb|ABC19700.1| Radical SAM [Moorella thermoacetica ATCC 39073]
Length = 441
Score = 36.0 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 20 AGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI 79
G + F C+ C FC +G + +N +E
Sbjct: 89 VGSLTFFISLQ-CH-----------RHCFFCFNP--NQEGYEYYTHNQRDCLAELEYLQR 134
Query: 80 TGEKEGRYCVLTGGEPLLQVDV--PLIQALNKR--GFEIAVETNGT 121
TG+ E ++ LTGGEPLL + +A ++ G + T G
Sbjct: 135 TGQ-EMKHVALTGGEPLLHPEETLAFFRAAKEKFPGVYTRLYTAGD 179
>gi|170761459|ref|YP_001786460.1| radical SAM domain-containing protein [Clostridium botulinum A3
str. Loch Maree]
gi|169408448|gb|ACA56859.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 297
Score = 36.0 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 30/162 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC K +++ ++++ + +
Sbjct: 20 CNL-----------ACDFC-----PETRRKPQFMSIEFFDKILDQIKPYTDYIYFHVK-- 61
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELK 150
GEPLL D+ + K+GF++ + TNGT+ I K
Sbjct: 62 -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTLINKAKDKII---MKKALRQVNFSLHSFD 117
Query: 151 LVFPQVNVSPENYIGFDF-------ERFSLQPMDGPFLEENT 185
N F + E+NT
Sbjct: 118 GNENSKNKDKYINDILSFVRDTIENNNIFISLRLWNLDEDNT 159
>gi|329926072|ref|ZP_08280683.1| radical SAM domain protein [Paenibacillus sp. HGF5]
gi|328939470|gb|EGG35823.1| radical SAM domain protein [Paenibacillus sp. HGF5]
Length = 333
Score = 36.0 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + N ++ D +
Sbjct: 57 CNL-----------ACTFC--------PPTERKANFIKVEDFARRLDEIKPHTSYIYLHV 97
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
GEPLL L+ +++GF++ + TNG
Sbjct: 98 KGEPLLHPKIDELLDISHEKGFKVNITTNG 127
>gi|157364470|ref|YP_001471237.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
gi|157315074|gb|ABV34173.1| Radical SAM domain protein [Thermotoga lettingae TMO]
Length = 310
Score = 36.0 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GE G +F FSGCNL +C +C Q G + ++LA+
Sbjct: 54 ISGE---TGAGTIF--FSGCNL-----------RCVYCQNM-NFSQKADGVEISTEELAE 96
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAV 116
+ + + L P L + + + GF++ V
Sbjct: 97 IFLDLQ---SHNAKCLNLVTPTPHLPFIIEALSIAKREGFDLPV 137
>gi|167768525|ref|ZP_02440578.1| hypothetical protein CLOSS21_03084 [Clostridium sp. SS2/1]
gi|167710049|gb|EDS20628.1| hypothetical protein CLOSS21_03084 [Clostridium sp. SS2/1]
Length = 368
Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL LS Q ++G ++D+ L ++ G + +LT
Sbjct: 35 CNLNCDMCYVHLSKQ----------EMQSQGRLRSLDEWISLAKQMKDAG---TLFLLLT 81
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPLL L L G + + TNG
Sbjct: 82 GGEPLLFPQFKELYCVLKDMGMILTLNTNG 111
>gi|155241762|gb|ABT18044.1| heme d1 biosynthesis protein [Heliobacillus mobilis]
Length = 391
Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C C +D + G + I+E + +L+
Sbjct: 47 CNL-----------HCIHCYSD--SDEIDYPGELTTQEAIKFIDEL---ADFNVPVLLLS 90
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPL++ D+ L+ +KR + TNGT+ P I
Sbjct: 91 GGEPLMRPDIFELVAHASKRNVRVTFSTNGTLITPDVAKEI 131
>gi|291279838|ref|YP_003496673.1| radical SAM domain protein [Deferribacter desulfuricans SSM1]
gi|290754540|dbj|BAI80917.1| radical SAM domain protein [Deferribacter desulfuricans SSM1]
Length = 354
Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 25/149 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + G + +D+ L++E VL+
Sbjct: 18 CNLNCVHCRSSSDIH-------------SPEGLFTLDKCFKLLDEIKEVA---TPVIVLS 61
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG--------TIEPPQGIDWICVSPKAGCDLK 142
GGEPLL+ DV + + ++GF + + TNG GI + +S
Sbjct: 62 GGEPLLRKDVFDIARYGTEKGFRMCMATNGVLVNDEICMKIKDSGIKIVSLSLDGSTKEI 121
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFERF 171
+ F V + E + D
Sbjct: 122 HDDFRGQPGAFEGVMRAAEYFNKHDIPFI 150
>gi|18313168|ref|NP_559835.1| pyruvate formate-lyase activating enzyme-like protein [Pyrobaculum
aerophilum str. IM2]
gi|18160681|gb|AAL64017.1| pyruvate formate-lyase activating enzyme homolog [Pyrobaculum
aerophilum str. IM2]
Length = 373
Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF FSGCN +C +C + G + LA + Q E+
Sbjct: 153 TVF--FSGCNF-----------RCVYCQNWDISQFSESGIEVTAEALAAI---QAKLREE 196
Query: 84 EGRYCVLTGGEPL--LQVDVPLIQALNKRGFEI 114
R GGEP + + ++ L +RG +
Sbjct: 197 GARNINWVGGEPTPNIPYILESLRILARRGVNV 229
>gi|84997417|ref|XP_953430.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304426|emb|CAI76805.1| hypothetical protein, conserved [Theileria annulata]
Length = 399
Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 22/180 (12%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
Q S C FC T +G++ VD++ D + G K + GEP
Sbjct: 102 CISAQVGCSYACSFCATGKIGLK----RNLTVDEITDQVLYFQQLGHKIDSISFMGMGEP 157
Query: 96 LLQVD--VPLIQALNKRGF-----EIAVETNGTIE------PPQGIDWICVSPKAGCDLK 142
L + + +KR F I V T G + + S + +
Sbjct: 158 LSNPNVFKSINILTDKRYFALSPRRINVSTVGILPGIKKLNKEYPYVNLAYSLHSPFTEE 217
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFE--RFSLQPM---DGPFLEENTNLAISYCFQNPK 197
+ L++P P R + + D +E+ I+ PK
Sbjct: 218 RNEMVPVNLLYPFQEAYPLMDERIRQTGRRIWISYILIKDKNDTKEHVEELINIIKGRPK 277
>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
Length = 342
Score = 36.0 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 15/154 (9%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
RF N Q + +C FC G K ++ D + K
Sbjct: 98 RFG--NTACISTQVGCNMRCSFC----ASAIGGKVRDLKASEMVDQVIAIDGDYGKISNI 151
Query: 88 CVLTGGEPLLQVDVPLIQAL-----NKRGF---EIAVETNGTIEPPQGIDWICVSPKAGC 139
++ GEP D + + G I + T G + +
Sbjct: 152 VLMGSGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSI 211
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
L EL+ +N + ++ +
Sbjct: 212 SLHAPN-DELRTQLMPINKAYPLEELMKACKYYV 244
>gi|301063602|ref|ZP_07204116.1| radical SAM domain protein [delta proteobacterium NaphS2]
gi|300442250|gb|EFK06501.1| radical SAM domain protein [delta proteobacterium NaphS2]
Length = 366
Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
S CNL +C++C G ++ EE E
Sbjct: 15 TSKCNL-----------RCKYC--YHFNSAGETKEDIETEEWLRFFEELKQCVVME---V 58
Query: 89 VLTGGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGC 139
L GGEP L+ D+ ++ +L + ++ +NGT+ + +I S +
Sbjct: 59 CLGGGEPFLRDDLKEILSSLARNQIRFSIMSNGTLITDEIAAFIAASKRCNY 110
>gi|302335104|ref|YP_003800311.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
7084]
gi|301318944|gb|ADK67431.1| glycyl-radical enzyme activating protein family [Olsenella uli DSM
7084]
Length = 314
Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--LIQALNKRGFEIAVETN 119
G +D + +E G L+GGE L Q + ++ A RG+ A+ET
Sbjct: 112 GDDRTIDDVIAFFDEDADFYRMSGGGITLSGGEVLAQPEAALSILMAAKARGYHTAIETC 171
Query: 120 GTIEPPQGID 129
G P +
Sbjct: 172 GYASAPTIMK 181
>gi|150403505|ref|YP_001330799.1| molybdenum cofactor biosynthesis protein A [Methanococcus
maripaludis C7]
gi|189028688|sp|A6VJM2|MOAA_METM7 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|150034535|gb|ABR66648.1| putative molybdenum cofactor biosynthesis protein A [Methanococcus
maripaludis C7]
Length = 298
Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 24/171 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G G + D++ +++ E R ++
Sbjct: 20 CNLK-----------CFYCH--KEGRNEEHGKLMSADEIGKIVKSSL---EFGVRKIKIS 63
Query: 92 GGEPLLQVDVPLIQALNKRG--FEIAVETNGTIEPPQGIDWICVS-PKAGCDLKIKGGQE 148
GGEPLL+ D+P I K +I++ TNG + + L ++
Sbjct: 64 GGEPLLRTDLPEIIENIKDDQIKDISLTTNGILLEKYAQKLKDAGLDRVNVSLDTLDPEQ 123
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEEN-----TNLAISYCFQ 194
K + N+ L P+ FL + + YC +
Sbjct: 124 YKQITAGGNIESVKKGIEKAIEVGLTPLKVNFLAMDCTINQLPAIMDYCRK 174
>gi|125974193|ref|YP_001038103.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
gi|125714418|gb|ABN52910.1| Radical SAM [Clostridium thermocellum ATCC 27405]
Length = 326
Score = 36.0 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C C D + DQ+ +++E GE + +
Sbjct: 30 CNL-----------RCLHCFNDSPTSTKSACKELEDDQIIKIVKEL---GEMKVANVCFS 75
Query: 92 GGEPLLQVDVPLIQALN--KRGFEIAVETNGTIEPPQGIDWICV 133
GGEPL++ V + +R ++ TNGT+ Q + + V
Sbjct: 76 GGEPLVRKQVLFNCLMLLGQRNVRTSIVTNGTLIDEQTAEMLNV 119
>gi|313204086|ref|YP_004042743.1| transcriptional regulator [Paludibacter propionicigenes WB4]
gi|312443402|gb|ADQ79758.1| transcriptional regulator [Paludibacter propionicigenes WB4]
Length = 407
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 22/110 (20%)
Query: 32 CNLWSGREQDRLSAQCRFC---DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
CNL +C +C D + + R + + L IE+ E
Sbjct: 25 CNL-----------RCSYCYYLDKKSLSPNNS-SNRMSEETLELFIEQYINAQPGEEVLF 72
Query: 89 VLTGGEPLLQVDVPLIQAL-------NKRGFEIAVETNGTIEPPQGIDWI 131
GGEPLL +A+ R E ++TNGT+ + +
Sbjct: 73 TWHGGEPLLMGIEYYQRAIRLQKVYGRNRRIENVLQTNGTLLTEEWCKFF 122
>gi|304438930|ref|ZP_07398853.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372596|gb|EFM26179.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 468
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 20/101 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG-RYNVDQLADLIEEQWITGEKEGRYCVL 90
CNL C +++ D+I + E + +L
Sbjct: 122 CNLKCT--------GC--------WAAEYGHKLNLTFEEMDDIITQ---GKELGCYFYLL 162
Query: 91 TGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
TGGEPL++ D + TNGT+ + + +
Sbjct: 163 TGGEPLVRKDDLIRLCEKHNDCGFHAFTNGTLIDKEFCEEV 203
>gi|225570935|ref|ZP_03779958.1| hypothetical protein CLOHYLEM_07039 [Clostridium hylemonae DSM
15053]
gi|225160397|gb|EEG73016.1| hypothetical protein CLOHYLEM_07039 [Clostridium hylemonae DSM
15053]
Length = 267
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL C FC + ++G R +L E GEK
Sbjct: 61 GCNLN-----------CPFCQNHDISMRGEDRRRNVFLTPEELAERAAELGEKGNIGIAF 109
Query: 91 TGGEPLL--QVDVPLIQALNKRGFEIAVETNG 120
T EP++ + + K + V TNG
Sbjct: 110 TYNEPMISYEYIRDTALLVRKAKMKSVVVTNG 141
>gi|150401898|ref|YP_001325664.1| molybdenum cofactor biosynthesis protein A [Methanococcus aeolicus
Nankai-3]
gi|189028686|sp|A6UX30|MOAA_META3 RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|150014601|gb|ABR57052.1| putative molybdenum cofactor biosynthesis protein A [Methanococcus
aeolicus Nankai-3]
Length = 299
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 30/175 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G ++ ++++ + + ++
Sbjct: 20 CNLN-----------CFYCH--KEGHNIDNNKLMTPTEIGEMVK---YSLKYGINKIKIS 63
Query: 92 GGEPLLQVDVP-----LIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGC 139
GGEPLL+ D+P + N + +I++ TNG G+D + VS
Sbjct: 64 GGEPLLRNDLPEIIRNIKNLKNNQIKDISLTTNGILLEKYAQKLKDAGLDRVNVSLDTLD 123
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
K + + + G + + M N + YC +
Sbjct: 124 PELYKKITGGNVELVKRGIEKAVEAGLKPIKINFVVMSNTVG--GLNDIMDYCRK 176
>gi|65320881|ref|ZP_00393840.1| COG0602: Organic radical activating enzymes [Bacillus anthracis
str. A2012]
Length = 99
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 12 VBGEGLRT---VVF--FAGCP-----------HRCFGCHNP-KSWNICNGTEMTVEEIVK 54
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 55 EI------ASNPLTDVTFSGGDPFFQ 74
>gi|282855890|ref|ZP_06265189.1| radical SAM domain protein [Pyramidobacter piscolens W5455]
gi|282586291|gb|EFB91560.1| radical SAM domain protein [Pyramidobacter piscolens W5455]
Length = 275
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C FC D + + G + L E +
Sbjct: 68 GCNL-----------RCPFCQNDSIAMSDGSGLAARRAEPVRLAELAGELRARGNIGLAY 116
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNG 120
T EP + D V + +++R + + TNG
Sbjct: 117 TYNEPTVSYDFVVDCARLIHERQMKNVLVTNG 148
>gi|228900763|ref|ZP_04064979.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
IBL 4222]
gi|228858863|gb|EEN03307.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
IBL 4222]
Length = 333
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + D IE + LTGGEPLL+
Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLQEELLLTFDEIERLARLFISLGVNKIRLTGGEPLLRK 77
Query: 100 DVPL--IQALNKRGFE-IAVETNGTI 122
D+P+ + G + I + TNG
Sbjct: 78 DLPMLIARLAKLEGLKDIGLTTNGIH 103
>gi|228965137|ref|ZP_04126233.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228794570|gb|EEM42080.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 333
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + D IE + LTGGEPLL+
Sbjct: 18 DRCNFRCTYCMPAEVFGPDYAFLQEELLLTFDEIERLARLFISLGVNKIRLTGGEPLLRK 77
Query: 100 DVPL--IQALNKRGFE-IAVETNGTI 122
D+P+ + G + I + TNG
Sbjct: 78 DLPMLIARLAKLEGLKDIGLTTNGIH 103
>gi|75764213|ref|ZP_00743774.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218897135|ref|YP_002445546.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
gi|74488299|gb|EAO51954.1| Molybdenum cofactor biosynthesis protein A [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218543554|gb|ACK95948.1| molybdenum cofactor biosynthesis protein A [Bacillus cereus G9842]
Length = 337
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ-WITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + D IE + LTGGEPLL+
Sbjct: 22 DRCNFRCTYCMPAEVFGPDYAFLQEELLLTFDEIERLARLFISLGVNKIRLTGGEPLLRK 81
Query: 100 DVPL--IQALNKRGFE-IAVETNGTI 122
D+P+ + G + I + TNG
Sbjct: 82 DLPMLIARLAKLEGLKDIGLTTNGIH 107
>gi|146295610|ref|YP_001179381.1| radical SAM domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409186|gb|ABP66190.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 487
Score = 36.0 bits (82), Expect = 3.3, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 20/148 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C C F ++G G DLI + V++
Sbjct: 123 CNLN-----------CSHC---FARMKGDTG----FIPANDLIRIFKEAQSLGVQEIVIS 164
Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
GGEP L ++ L +A ++I + TNG + + S D +
Sbjct: 165 GGEPTLHPELENILREARKIGDWKIKLITNGYLSGNPENERKIKSLCNYVDDIQVSFDGI 224
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMD 177
K ++ F L ++
Sbjct: 225 KPETHDAIRGKGSFEKAYRFMFLLSEVE 252
>gi|322420151|ref|YP_004199374.1| Radical SAM domain-containing protein [Geobacter sp. M18]
gi|320126538|gb|ADW14098.1| Radical SAM domain protein [Geobacter sp. M18]
Length = 409
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C F+ R ++D ++ + L GGEPLL D
Sbjct: 29 DRCNLRCSYC---FIDCTPANDSRMSLDTAKEIARLLIENSQYPQVALHLYGGEPLLVDD 85
Query: 101 V-------PLIQALNKRGFEI--AVETNGTIEPPQGI---DWICVSPKAGCDLKIKGGQE 148
K G E+ + TNGT+ + + + VS CD
Sbjct: 86 AWISDFVGYARPLGQKHGKEVIFPLSTNGTLLDEERMVRLHQLGVSFSISCDGPPHIHDA 145
Query: 149 LK 150
+
Sbjct: 146 CR 147
>gi|229071100|ref|ZP_04204326.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus F65185]
gi|228712040|gb|EEL63989.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus F65185]
Length = 147
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVDCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ANNPLTDVTFSGGDPFFQ 71
>gi|257372919|ref|YP_003175693.1| ATPase P [Halomicrobium mukohataei DSM 12286]
gi|257167643|gb|ACV49335.1| heavy metal translocating P-type ATPase [Halomicrobium mukohataei
DSM 12286]
Length = 785
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 4 YSIKEIFLTL---------QGEGGHAGRVAVF 26
+ E F ++ GE +AG+ A+F
Sbjct: 502 LPVVEAFESITGKGLRAESDGETYYAGKPALF 533
>gi|148259214|ref|YP_001233341.1| radical SAM domain-containing protein [Acidiphilium cryptum JF-5]
gi|146400895|gb|ABQ29422.1| Radical SAM domain protein [Acidiphilium cryptum JF-5]
Length = 579
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL S + D + G R +D+ AD E G LT
Sbjct: 309 CNLACEGCYIESSPR-----NDRLAWLRLDGFRRVLDEAADRHPELREIG--------LT 355
Query: 92 GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEP + D+ + RG+ + V TN + I
Sbjct: 356 GGEPFMNPDIEALIGMALDRGYRVLVLTNAMTPMRHHMAAI 396
>gi|229179887|ref|ZP_04307233.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus 172560W]
gi|228603568|gb|EEK61043.1| Anaerobic ribonucleoside-triphosphate reductase activating
protein [Bacillus cereus 172560W]
Length = 147
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ GEG VF F+GC +C C G V+++
Sbjct: 9 VDGEGLRT---VVF--FAGCP-----------HRCVDCHNP-KSWNICNGTEMTVEEIVK 51
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQ 98
I +GG+P Q
Sbjct: 52 EI------ASNPLTDVTFSGGDPFFQ 71
>gi|300087565|ref|YP_003758087.1| radical SAM domain-containing protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527298|gb|ADJ25766.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 381
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CR ++G G N ++ LI++ G+ +LT
Sbjct: 26 CNLLC--------EHCR-----ASALKGPYPGELNSEECFRLIDQIHQIGQ---PILILT 69
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ + +K+GF + + TNG
Sbjct: 70 GGEPLLREDIFEIAGYASKKGFRVVMGTNG 99
>gi|239816028|ref|YP_002944938.1| pyrroloquinoline quinone biosynthesis protein PqqE [Variovorax
paradoxus S110]
gi|239802605|gb|ACS19672.1| coenzyme PQQ biosynthesis protein E [Variovorax paradoxus S110]
Length = 385
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 33 NLWSGREQD-RLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
LW E R C FC DF + G + L + E C
Sbjct: 12 PLWLLAELTYRCPLHCVFCFNPVDFAQQENELGTEDWLRVLRE-------GRELGAVQCG 64
Query: 90 LTGGEPLLQVDVPLIQALNKR-GFEIAVETNG 120
L+GGEPLL+ D+ +I A R G+ + T+G
Sbjct: 65 LSGGEPLLRDDLEIIIAEAARLGYYTNLLTSG 96
>gi|206975556|ref|ZP_03236469.1| hypothetical protein BCH308197_3478 [Bacillus cereus H3081.97]
gi|217960929|ref|YP_002339497.1| hypothetical protein BCAH187_A3554 [Bacillus cereus AH187]
gi|206746458|gb|EDZ57852.1| hypothetical protein BCH308197_3478 [Bacillus cereus H3081.97]
gi|217066598|gb|ACJ80848.1| hypothetical protein BCAH187_A3554 [Bacillus cereus AH187]
Length = 115
Score = 36.0 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ +E NG GI + V+ K L ++ +L+ + + I F
Sbjct: 7 NDVTVQMELNGVFWNEDGIAEMTVTTKEEHSLILRLVVDLERKTIRATSAE---IVNGFC 63
Query: 170 RFSLQP-------MDGPFLEENTNLAISYCFQNPKWRLSV 202
Q D E A + ++P++R +
Sbjct: 64 PLCKQKRNECSELNDLQNKMEILEEAYDWVREHPEYRFQL 103
>gi|317470809|ref|ZP_07930191.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
gi|316901708|gb|EFV23640.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
Length = 182
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 31/120 (25%), Gaps = 13/120 (10%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCNL C FC + ++ L + +
Sbjct: 38 FGCNL-----------HCPFCQNHDISMKNADEAETVFLAPEKLALKASELRARGNIGVA 86
Query: 90 LTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EPL + + + + G + + TNG + DLK
Sbjct: 87 YTYNEPLTGYEYVRDAAKIVKQYGMKNVLVTNGAFSEAVEESLLPYIDAMNVDLKGIRED 146
>gi|146318359|ref|YP_001198071.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis
05ZYH33]
gi|223932440|ref|ZP_03624442.1| glycyl-radical enzyme activating protein family [Streptococcus suis
89/1591]
gi|253751509|ref|YP_003024650.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
suis SC84]
gi|253753410|ref|YP_003026551.1| pyruvate formate-lyase activating enzyme [Streptococcus suis P1/7]
gi|253755761|ref|YP_003028901.1| pyruvate formate-lyase activating enzyme [Streptococcus suis BM407]
gi|302023649|ref|ZP_07248860.1| pyruvate formate-lyase activating enzyme [Streptococcus suis
05HAS68]
gi|330832668|ref|YP_004401493.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis ST3]
gi|145689165|gb|ABP89671.1| Pyruvate-formate lyase-activating enzyme [Streptococcus suis
05ZYH33]
gi|223898894|gb|EEF65253.1| glycyl-radical enzyme activating protein family [Streptococcus suis
89/1591]
gi|251815798|emb|CAZ51405.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
suis SC84]
gi|251818225|emb|CAZ56028.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
suis BM407]
gi|251819656|emb|CAR45423.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
suis P1/7]
gi|292558152|gb|ADE31153.1| Radical SAM [Streptococcus suis GZ1]
gi|319757938|gb|ADV69880.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis JS14]
gi|329306891|gb|AEB81307.1| pyruvate-formate lyase-activating enzyme [Streptococcus suis ST3]
Length = 258
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 31/170 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTK------------ 61
G G VF GC L +C +C + +
Sbjct: 18 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKRKPEPMLDAVSKKMTI 61
Query: 62 -GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G +VD + + + E+ G L+GGE Q + ++ + G A+ET
Sbjct: 62 MGEEKSVDDIISEVMKDIDFYEESGGGLTLSGGEIFAQYEFAKAILMEAKRHGLHTAIET 121
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDF 168
+E + +D I DLK + V N I + F
Sbjct: 122 TAFVEHHKFVDLIQYVDFIYTDLKHYNTISHRKVTGVNNNLIIQNIQYAF 171
>gi|302309567|ref|NP_987030.2| AGR364Cp [Ashbya gossypii ATCC 10895]
gi|299788419|gb|AAS54854.2| AGR364Cp [Ashbya gossypii ATCC 10895]
Length = 1001
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 17/172 (9%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
++ CR+ ++ + IE+Q + K + T E
Sbjct: 378 CDNKEGIDELSCRY------WLESLDNKATRKRLIKFFIEQQDWSKLKLYARFIATNAE- 430
Query: 96 LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQ 155
++ + GF + TN + I + C K +++ +
Sbjct: 431 TMKDVKEELIECLDNGFRSQLHTN--RINVKNIIFFCEMVKFNLVPGFLIFHKIRTLIFN 488
Query: 156 V----NVSPENYIGFDFERFSLQ-PMDGPFLEENTNLAISYCFQNPKWRLSV 202
+ N+ + +F RF + P P +E+ L + RLSV
Sbjct: 489 LLVPNNIEILTVLFENFGRFLINKPEFSPQMEKMLELLSEKKKDH---RLSV 537
>gi|168334966|ref|ZP_02693084.1| putative pyruvate formate-lyase 3 activating enzyme [Epulopiscium
sp. 'N.t. morphotype B']
Length = 300
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 38/244 (15%), Positives = 66/244 (27%), Gaps = 58/244 (23%)
Query: 2 KLYSIKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA-------------- 45
I EI F G G +F GC L + S
Sbjct: 3 TKLKIIEIEKFAVHDGPGIRT---VIF--TKGCPLKCEWCANPESQSFKTVIMHNHKKCL 57
Query: 46 -----------------------------QCRFCDT-DFVGIQGTKGGRYNVDQLADLIE 75
+C+ C T G + ++ +
Sbjct: 58 KCLNCLKVCEHNAIRVQNNIIAINHSECIRCKKCTTVCLTDACYFSGESIAIAEIVKEVC 117
Query: 76 EQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133
+ + + G ++GGE L+Q LI L K G ++A+ET G ++ +
Sbjct: 118 KDKLYYDSSGGGVTISGGEALMQVKAVNVLIDKLKKEGIDVAIETCGAVKAAVLRAIVEK 177
Query: 134 SPKAGCDLKIKGGQELKLVFPQVNVSPENYI-----GFDFERFSLQPMDGPFLEENTNLA 188
DLK + + N ++ + P+ F EE+
Sbjct: 178 VDLVMFDLKHIDKYKYEQATKGEFELMINNFLMLSSEYNEKTIIRVPVIPEFNEEDLYDI 237
Query: 189 ISYC 192
+
Sbjct: 238 CDFV 241
>gi|71906049|ref|YP_283636.1| radical SAM family protein [Dechloromonas aromatica RCB]
gi|71845670|gb|AAZ45166.1| Radical SAM [Dechloromonas aromatica RCB]
Length = 474
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 27/192 (14%)
Query: 31 GCNLWSGREQDR--------------LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G D + +C C + + ++ ++ +++
Sbjct: 83 GCPYDCGLCPDHMQHSCLSVVEITEHCNLRCPVC---YAESGPERQTHRSLAEVEAMLDA 139
Query: 77 QWITGEKEGRYCVLTGGEPLLQVD-VPLIQALNKRGFE-IAVETNGTIEPPQGIDWICVS 134
+ E E L+GGEP L D ++ A R + V TNG + ++
Sbjct: 140 V-VANEGEPDVVQLSGGEPTLHPDFFAILDAAKARPIRHLMVNTNGLRLALEPDFVARLA 198
Query: 135 PKAGCDLKIKGGQELKLVFPQVN-----VSPENYIGFDFERFSLQ--PMDGPFLEENTNL 187
L+ Q + + E ++ + N
Sbjct: 199 TYKPGIEIYLQFDSLRDEVLQQMRGADLAAIHERALVNLEAHAISTTLVMTVKRGVNDEE 258
Query: 188 AISYCFQNPKWR 199
+ K+R
Sbjct: 259 IGAVIQHGLKYR 270
>gi|312137147|ref|YP_004004484.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
gi|311224866|gb|ADP77722.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
Length = 347
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
C +C + + + N ++++ G++ T L + + + +
Sbjct: 94 CPWCQNYHLSKKAPNPKKANYISPENIVDLALKMGDEGV-CVSFTEPTLLFEYSLDVFKL 152
Query: 107 LNKRGFEIAVETNGTIE-------PPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVS 159
K G + +NG I G+D I + K K +K F
Sbjct: 153 AKKHGLYTSYVSNGYITEKALVLLKNAGMDAINIDIKGDSKTYKKYCGNIKAKFVWNTAK 212
Query: 160 PENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
+G E +L + G +N + + K
Sbjct: 213 KALDMGIHVEIVNLI-VTGVN--DNLKTIKNIVKLHLK 247
>gi|146296205|ref|YP_001179976.1| radical SAM domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409781|gb|ABP66785.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 282
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 27/163 (16%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GC S +C+ C + + ++L +L + +K+
Sbjct: 79 TFGC-----------SFRCQHCQNFEISQLIPNVFEVDTERLIELAK-----KDKDCIGI 122
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T EP + + + + + + GF+ + TNG + ++ + V A DLK
Sbjct: 123 AFTYNEPTIWFEYVLDVAKKFKEEGFKTVLVTNGYLNEEPLLELLEVIDAANIDLKAFND 182
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
+ K V S + +I ++ + E T L I
Sbjct: 183 EFYKKVCSGDLESVKRFIEICNKKIHI---------EITTLII 216
>gi|294675020|ref|YP_003575636.1| putative Fe-S oxidoreductase [Prevotella ruminicola 23]
gi|294471944|gb|ADE81333.1| putative Fe-S oxidoreductase [Prevotella ruminicola 23]
Length = 361
Score = 36.0 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
C L + + C+ + + +++ + + +++
Sbjct: 37 CTLRCDLKCRHCGSDCK---------MKSDSRDMPKEDFLRVLDGIAKKTDPHKVFVIIS 87
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGI 128
GGEPL++ D +A+ +GF + TN PQ
Sbjct: 88 GGEPLMRQDIEECGRAIYDKGFPWGMVTNALHLTPQRW 125
>gi|326402367|ref|YP_004282448.1| hypothetical protein ACMV_02190 [Acidiphilium multivorum AIU301]
gi|325049228|dbj|BAJ79566.1| hypothetical protein ACMV_02190 [Acidiphilium multivorum AIU301]
Length = 579
Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL S + D + G R +D+ A+ E G LT
Sbjct: 309 CNLACEGCYIESSPR-----NDRLAWLRLDGFRRVLDEAANRHPELREIG--------LT 355
Query: 92 GGEPLLQVDVPLIQ-ALNKRGFEIAVETNGTIEPPQGIDWIC 132
GGEP + D+ + RG+ + V TN + I
Sbjct: 356 GGEPFMNPDIEALIGMALDRGYRVLVLTNAMTPMRHHMAAIS 397
>gi|312623527|ref|YP_004025140.1| Radical SAM domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203994|gb|ADQ47321.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 194
Score = 36.0 bits (82), Expect = 3.6, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 28/96 (29%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y + TL G G G GC S +C+ C +
Sbjct: 11 YPV----YTL-GPGKRVG-----IWLQGC-----------SIRCKGCMSSHTW------- 42
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
++ + + + + + ++GGEP Q
Sbjct: 43 EFDKSRAIKIEQVANVLKSFGCKRLTISGGEPFDQH 78
>gi|332041871|gb|EGI78220.1| molybdenum cofactor biosynthesis protein A [Hylemonella gracilis
ATCC 19624]
Length = 367
Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C V + + ++ ++ R LTGGEPLL+
Sbjct: 37 DRCNFRCSYCMPKEVFTKDYPYLPHGDLLTFEEIARLARAFVSLGVRKIRLTGGEPLLRK 96
Query: 100 DVPLIQALNK 109
++ +
Sbjct: 97 NIEALIEQLA 106
>gi|307243856|ref|ZP_07525984.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306492767|gb|EFM64792.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 345
Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F CNL +C++C D + + + ++E
Sbjct: 4 TIFV-TQKCNL-----------RCKYCYEDNLDRRDDMSIETADKVIKFILERLTEKNID 51
Query: 84 EGRYCVLTGGEPLLQVD------VPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
+ GGEPLL D L ++ R + TNGT+ + ID++C
Sbjct: 52 RPLVIIFHGGEPLLNFDLVKYIREELENKVSDRKIIYHMTTNGTLINNENIDFLC 106
>gi|298675055|ref|YP_003726805.1| molybdenum cofactor biosynthesis protein A [Methanohalobium
evestigatum Z-7303]
gi|298288043|gb|ADI74009.1| molybdenum cofactor biosynthesis protein A [Methanohalobium
evestigatum Z-7303]
Length = 308
Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + +VD ++ ++ +
Sbjct: 32 CNLN-----------CIYC---HHEGNSSSKKEMSVDDISKIVH---TASCYGVNKIKFS 74
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPL++ D I EI+ TNG
Sbjct: 75 GGEPLVRDDFEQILQSLPPLKEISATTNG 103
>gi|254519002|ref|ZP_05131058.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
gi|226912751|gb|EEH97952.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
Length = 414
Score = 36.0 bits (82), Expect = 3.7, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 42 RLSAQCRFCDTD-FVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
R C C F+ + K ++ +I+ G TGGEPLL+ D
Sbjct: 116 RCMYNCWHCSAKRFIKDKNDKSKEMTTYEIKKIIKALQDLGVG---IIGFTGGEPLLRND 172
Query: 101 VPLIQALNKRGFEIAVETNGT 121
+ I + V TNG
Sbjct: 173 LEEIISSIDNRSISYVFTNGY 193
>gi|327400189|ref|YP_004341028.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus veneficus
SNP6]
gi|327315697|gb|AEA46313.1| molybdenum cofactor biosynthesis protein A [Archaeoglobus veneficus
SNP6]
Length = 299
Score = 35.6 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + G +V++++ + + + E R +T
Sbjct: 21 CNLS-----------CIYC---HREGEVNPGEEMHVEEISRISKAFY---ELGIRKVKIT 63
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNG 120
GGEPLL+ D+ I EI++ TNG
Sbjct: 64 GGEPLLREDIVEIVQSFPPFDEISITTNG 92
>gi|307707088|ref|ZP_07643885.1| hypothetical protein ydeM [Streptococcus mitis SK321]
gi|307617614|gb|EFN96784.1| hypothetical protein ydeM [Streptococcus mitis SK321]
Length = 423
Score = 35.6 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + + Y+ ++ + I ++ + + T
Sbjct: 74 CNLT-----------CSYCFENDKDRKPFLSSEYDGKKIVNFILDELNFKKYKSLDICFT 122
Query: 92 GGEPL-----LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICV 133
GGEPL ++ + + TNGTI + + ++
Sbjct: 123 GGEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTIFTNKIMSFLDC 169
>gi|170289004|ref|YP_001739242.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
gi|170176507|gb|ACB09559.1| Radical SAM domain protein [Thermotoga sp. RQ2]
Length = 331
Score = 35.6 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 18/100 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN G FC + + R +QL + + + +
Sbjct: 80 TFGCNFKCG-----------FCQNWEISQTKPETKRVTPEQLVKIAQ-----MNRNSKGI 123
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQ 126
T EPL+ + + + + G + TNG I
Sbjct: 124 AFTYNEPLVWYEFVLDTSRVAVREGMYCVLVTNGFINEEP 163
>gi|313204156|ref|YP_004042813.1| radical sam domain protein [Paludibacter propionicigenes WB4]
gi|312443472|gb|ADQ79828.1| Radical SAM domain protein [Paludibacter propionicigenes WB4]
Length = 282
Score = 35.6 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 13/127 (10%)
Query: 47 CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQ 105
C FC D+ ++++ + + GEPLL ++
Sbjct: 18 CSFC-----FKTSRATKFMTPDEFQTIVDKIRPFTNYIYLHVL---GEPLLHPQLDEILS 69
Query: 106 ALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIG 165
G I + TNG + + + S + + +K
Sbjct: 70 IAETAGLNINITTNGGLLQRKKDILLKHSIRQINISLHDAEENIKP----EKWDEYLQTM 125
Query: 166 FDFERFS 172
DF
Sbjct: 126 LDFSILF 132
>gi|218888075|ref|YP_002437396.1| radical SAM protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218759029|gb|ACL09928.1| Radical SAM domain protein [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 397
Score = 35.6 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG-GEPLLQV 99
R A C +C + T GG + + ++ + + + + R+ L G GEPLL
Sbjct: 25 TRCDAACVYC------PRTTCGGGWRDEDMSMALFRRVLAACRGARHLHLQGWGEPLLHP 78
Query: 100 DVP-LIQALNKRGFEIAVETNGTI 122
P ++ + G+ + + TNG
Sbjct: 79 RYPDMLAEAVEAGYVVGLTTNGVH 102
>gi|125972753|ref|YP_001036663.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
gi|256005672|ref|ZP_05430629.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
gi|281416952|ref|ZP_06247972.1| Radical SAM domain protein [Clostridium thermocellum JW20]
gi|125712978|gb|ABN51470.1| Radical SAM [Clostridium thermocellum ATCC 27405]
gi|255990360|gb|EEU00485.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
gi|281408354|gb|EFB38612.1| Radical SAM domain protein [Clostridium thermocellum JW20]
gi|316941009|gb|ADU75043.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
Length = 445
Score = 35.6 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 47 CRFCDTDFVG-IQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP--L 103
CRFC + G + K + + +++ E TGGEPLL ++P +
Sbjct: 127 CRFC---YAGCTKVKKNRELDKEGFKKVLDIIRYEAEVPS--VSFTGGEPLLNKNLPELI 181
Query: 104 IQALNKRGFEIAVETNG 120
A G + + TNG
Sbjct: 182 KYASKANGMRVNLITNG 198
>gi|94969975|ref|YP_592023.1| radical SAM family Fe-S protein [Candidatus Koribacter versatilis
Ellin345]
gi|94552025|gb|ABF41949.1| Fe-S protein, radical SAM family [Candidatus Koribacter versatilis
Ellin345]
Length = 347
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 25/179 (13%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCN+ Q+ D + + + +L E+ + +
Sbjct: 70 TAGCNMGCFFCQNW--------DISKAKSDQVHAADLSPEDVVELAIERRV------PHL 115
Query: 89 VLTGGEPLLQ--VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---I 143
T EP + + + +A + G + +NG I D A DLK
Sbjct: 116 AFTYNEPTIWGEYVIDIARAAHAAGLNNVMVSNGYITREAFFDVYRHIDAANIDLKAFTE 175
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFS-----LQPMDGPFLEENTNLAISYCFQNPK 197
K ++ L Q + ++ + + + P EE L + + +N
Sbjct: 176 KFYSKVTLTHLQPVLETLKWLRHETGVWFEITNLIIPTLNDEQEEFRQL-VDWILENLG 233
>gi|29345920|ref|NP_809423.1| putative heme biosynthesis protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|253568682|ref|ZP_04846093.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29337814|gb|AAO75617.1| putative heme biosynthesis protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|251842755|gb|EES70835.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 366
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 22/178 (12%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
R + +CR C +D T + +++ + +++GGEP ++
Sbjct: 38 CTLRCNVRCRHCGSDCKSSPATPD--MPLQDFLKVLDSIATHTNPHDVFVIISGGEPTVR 95
Query: 99 VDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
D+ + +++RG+ + NG + + + ++G LK V +
Sbjct: 96 EDLETCGKEISRRGYPWGMVCNGLCLTRERLHNL---IRSGMRSISISLDGLKDVHNWMR 152
Query: 158 VSPE--NYIGFDFERFSLQPM------------DGPFLEENTNLAISYCFQNPKWRLS 201
PE + + P P L L IS + WR+S
Sbjct: 153 RHPESFDCAVNAIREITAIPELTFDVITCVTRRSLPQLPAMKELLISLGVKR--WRVS 208
>gi|302342465|ref|YP_003806994.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
gi|301639078|gb|ADK84400.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
Length = 414
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITG--EKEGRYCVLTGGEPLLQ 98
+ +A+C +C T + QG GRY +A +I+ + + + GEPL+
Sbjct: 12 KCNARCTWCVTGYRNRQGVAYGRYMTPQDVAKVIDYLREQRIITPDAYFFLYNWGEPLIN 71
Query: 99 VD-VPLIQALNKRGFEIAVETN 119
+++ LN+R + TN
Sbjct: 72 PHFAEIVEELNRREVTYIISTN 93
>gi|160931645|ref|ZP_02079039.1| hypothetical protein CLOLEP_00476 [Clostridium leptum DSM 753]
gi|156869290|gb|EDO62662.1| hypothetical protein CLOLEP_00476 [Clostridium leptum DSM 753]
Length = 300
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 42/155 (27%), Gaps = 50/155 (32%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLS----------------------------- 44
G G VF GC L + S
Sbjct: 15 DGPGIRT---TVF--LKGCPLRCVWCHNPESNAIQPQLAFHENLCIGCGNCFAICPNQCH 69
Query: 45 --------------AQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
A C C G G R V+++ + + G +
Sbjct: 70 ALNNGRHEIARAQCAGCGLCVQACTGALEILGKRCTVEEVMKEVRKDASFYRTSGGGVTV 129
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIE 123
+GGEPL+Q D L+ A K G +ET+G
Sbjct: 130 SGGEPLMQPDFTYELLSAAKKEGLHTCLETSGYGP 164
>gi|145633351|ref|ZP_01789082.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
3655]
gi|144986197|gb|EDJ92787.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
3655]
Length = 337
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
D+ + +C +C G + + + L ++I E LTGGEP L+
Sbjct: 31 DQCNFRCTYC-----LPDGYQPEANKPSFLTLKEIIHLAQAFAEMGTEKIRLTGGEPTLR 85
Query: 99 VDVPLIQALNKR--GF-EIAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIK---G 145
D I G ++AV TNG DW I VS + G
Sbjct: 86 KDFISIAESIANIDGIRQLAVTTNGYRMAKDVADWKQAGITSINVSVDSLDPKMFHQITG 145
Query: 146 GQELKLVFPQVNVSPE 161
+ V ++ + E
Sbjct: 146 INKFDDVMRGIDRAFE 161
>gi|126726927|ref|ZP_01742766.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2150]
gi|126703885|gb|EBA02979.1| radical SAM domain protein [Rhodobacterales bacterium HTCC2150]
Length = 329
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 65 YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
D+++D + + R TGGEP + + + + G+E+ + TN
Sbjct: 77 ITADEVSDYLTQLKDQ-NWGVREIAFTGGEPFMNPEMIEITRRSLAAGYEVLILTNAMRP 135
Query: 124 PP 125
Sbjct: 136 MM 137
>gi|159041556|ref|YP_001540808.1| radical SAM domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920391|gb|ABW01818.1| Radical SAM domain protein [Caldivirga maquilingensis IC-167]
Length = 371
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
VF F+GCN +C +C + + G +LA + Q E
Sbjct: 153 TVF--FTGCNF-----------RCVYCQNWDISQRPENGVEVTPGELAAI---QAKLRED 196
Query: 84 EGRYCVLTGGEPL 96
R GGEP
Sbjct: 197 GARNINWVGGEPT 209
>gi|253997401|ref|YP_003049465.1| molybdenum cofactor biosynthesis protein A [Methylotenera mobilis
JLW8]
gi|253984080|gb|ACT48938.1| molybdenum cofactor biosynthesis protein A [Methylotenera mobilis
JLW8]
Length = 341
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 28/181 (15%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
R S DR +C +C + ++++ L++ G + R
Sbjct: 27 IRLS--------ITDRCDFRCTYC-MAEEMTFLPRDEVLSLEECLRLVKAFVQLGVTKVR 77
Query: 87 YCVLTGGEPLLQVDVPLIQA---LNKRGFEIAVETNGTI-------EPPQGIDWICVSPK 136
+TGGEPL++ + + +R E+ + TNG+ G+ I +S
Sbjct: 78 ---ITGGEPLVRKNALWLFEEVGKLERLKELVLTTNGSQLEKQAASLKQAGVKRINISLD 134
Query: 137 AGCDLKIK---GGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF 193
+ + K EL V + + + GFD + + M G +E L + +
Sbjct: 135 SLNSERFKKITRTGELDKVLHGIQAAKQ--AGFDNIKLNTVLMRGTNDDEVQAL-VDFAI 191
Query: 194 Q 194
Q
Sbjct: 192 Q 192
>gi|168229186|ref|NP_001108212.1| zinc finger protein-like [Danio rerio]
gi|160774045|gb|AAI55294.1| Si:ch211-119o8.6 protein [Danio rerio]
Length = 735
Score = 35.6 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
F R CN+ QD+ S C +CD F
Sbjct: 380 FLRKQECNVHQTIHQDKRSFHCTYCDNSF 408
>gi|222530640|ref|YP_002574522.1| putative radical activating enzyme [Caldicellulosiruptor bescii
DSM 6725]
gi|222457487|gb|ACM61749.1| putative radical activating enzyme [Caldicellulosiruptor bescii
DSM 6725]
Length = 194
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 28/96 (29%)
Query: 4 YSIKEIFLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG 63
Y + TL G G G GC S +C+ C +
Sbjct: 11 YPV----YTL-GPGKRVG-----IWLQGC-----------SIRCKGCMSSHTW------- 42
Query: 64 RYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
++ ++ + + I + ++GGEP Q
Sbjct: 43 EFDKNRAIKIEQVTNILKSFGCKRLTISGGEPFDQH 78
>gi|121534709|ref|ZP_01666530.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
gi|121306729|gb|EAX47650.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
Length = 390
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + G ++ I++ + + +
Sbjct: 50 CNLSCQHCYISAEDR-------------EYAGELTTEEAKAFIDDL---AAMKVPVLLFS 93
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GGEPL++ D+ L RG + TNGT+ P + I
Sbjct: 94 GGEPLVRPDLFELGAYARDRGIRPVISTNGTLITPAIAERI 134
>gi|40062747|gb|AAR37641.1| molybdenum cofactor biosynthesis protein A [uncultured marine
bacterium 439]
Length = 331
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 41 DRLSAQCRFC-DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
D + +C +C D D T+ + +++ ++ + E LTGGEPLL+
Sbjct: 21 DHCNYRCHYCRDEDH-QTHTTRSEVLSFEEIVKIV---GLFAELGVTKVRLTGGEPLLRK 76
Query: 100 DV 101
D+
Sbjct: 77 DI 78
>gi|68250276|ref|YP_249388.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
86-028NP]
gi|81335303|sp|Q4QJR9|MOAA_HAEI8 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|68058475|gb|AAX88728.1| molybdenum cofactor biosynthesis protein A [Haemophilus influenzae
86-028NP]
Length = 337
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQG--TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
D+ + +C +C G + + + L ++I E LTGGEP L+
Sbjct: 31 DQCNFRCTYC-----LPDGYQPEANKPSFLTLKEIIHLAQAFAEMGTEKIRLTGGEPTLR 85
Query: 99 VDVPLIQALNKR--GF-EIAVETNGTIEPPQGIDW-------ICVSPKAGCDLKIK---G 145
D I G ++AV TNG DW I VS + G
Sbjct: 86 KDFISIAESIANIDGIRQLAVTTNGYRMAKDVADWKQAGITSINVSVDSLDPKMFHQITG 145
Query: 146 GQELKLVFPQVNVSPE 161
+ V ++ + E
Sbjct: 146 INKFDDVMRGIDRAFE 161
>gi|37680378|ref|NP_934987.1| hypothetical protein VV2194 [Vibrio vulnificus YJ016]
gi|37199125|dbj|BAC94958.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
Length = 306
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG----------EKEGRYCVL 90
++ + C +C + NVD++ ++ + + +
Sbjct: 32 EKCNYDCHYC---YAKWAKPNELHRNVDEMKRVLSKLAEYFLSPNPIQQQLQYQSVRLNF 88
Query: 91 TGGEPLLQV--DVPLIQALNKRGFEIAVETNGT 121
GGEPLL + + + GFE ++ TNG
Sbjct: 89 AGGEPLLLKQRLIDALDFAIELGFETSIITNGH 121
>gi|170289684|ref|YP_001736500.1| Fe-S oxidoreductase [Candidatus Korarchaeum cryptofilum OPF8]
gi|170173764|gb|ACB06817.1| Predicted Fe-S oxidoreductase [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 573
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 32 CNLWSGREQ--------------DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQ 77
C G + +R + C +C + G +++++ +++
Sbjct: 106 CPFSCGICEAHWNTTALANLVVTNRCNMDCWYC-FFYAERMGYVYEP-SLEEIDRMVDLM 163
Query: 78 WITGEKEGRYCVLTGGEPLLQVDV-PLIQALNKRGF-EIAVETNGTIEPPQGI 128
G +TGGEPLL+ D+ +++ L ++G I + T G +
Sbjct: 164 LKEKPAHGNAVQITGGEPLLRDDIVEIVKLLKRKGVTHIQLNTEGVAFLEKPW 216
>gi|169146782|emb|CAQ14078.1| novel zinc finger protein [Danio rerio]
Length = 735
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDF 54
F R CN+ QD+ S C +CD F
Sbjct: 380 FLRKQECNVHQTIHQDKRSFHCTYCDNSF 408
>gi|320451435|ref|YP_004203531.1| pyruvate formate-lyase activating enzyme [Thermus scotoductus
SA-01]
gi|320151604|gb|ADW22982.1| pyruvate formate-lyase activating enzyme [Thermus scotoductus
SA-01]
Length = 350
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 35/195 (17%)
Query: 31 GCNLWSGREQDRLSAQCRFCD---TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
GCNL+ Q+ + +F + T + G + + + + E R
Sbjct: 87 GCNLFCAFCQNWEIS--QFREFKVTPEGHLDRPIGEDWPPEAIVEKAEAL------GVRL 138
Query: 88 CVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
T EP + ++ + +RG + T+G A DLK
Sbjct: 139 LAYTYNEPAVWIEYAHDTAKLAKERGMKNVFVTSGFETKEAWEYIRPFLDAANVDLKGFT 198
Query: 146 GQ--------ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF---- 193
+ LK V + + + L E +
Sbjct: 199 EEFYRKICGARLKPVLESLEHLLAQGVWVEVTTLLL--EGYNDSPEEVRAMARFLKGLSP 256
Query: 194 --------QNPKWRL 200
+P +R+
Sbjct: 257 EVPWHLTAAHPDYRM 271
>gi|89899210|ref|YP_521681.1| radical SAM family protein [Rhodoferax ferrireducens T118]
gi|89343947|gb|ABD68150.1| Radical SAM [Rhodoferax ferrireducens T118]
Length = 358
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 26/177 (14%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL C+FC + + + E + +
Sbjct: 83 TAGCNLA-----------CKFCQNWDISKSRDMDRLMDQASPEAIAMEAV---KYGCKSV 128
Query: 89 VLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T +P++ + + + + RG + T G + D+ A DLK
Sbjct: 129 AFTYNDPVIFAEYAMDVADSCHARGVQAVAVTAGYMHDQPRRDFYAKMDAANVDLKAFTD 188
Query: 147 Q--------ELKLVFPQ-VNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
L+ V V + E + F+ L P EE T ++ +
Sbjct: 189 DFYFKLTGSHLQPVLDTLVYLKRETRVWFEITTL-LIPGHNDSNEEITAMSRWVMQE 244
>gi|18977003|ref|NP_578360.1| hypothetical protein PF0631 [Pyrococcus furiosus DSM 3638]
gi|18892632|gb|AAL80755.1| hypothetical protein PF0631 [Pyrococcus furiosus DSM 3638]
Length = 337
Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 24/136 (17%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
AVF F GCNL Q+ I+G + G + +L+
Sbjct: 116 AVF--FHGCNLDCLFCQNIE----------HKTIKGWEIG------IEELVRAVL---NP 154
Query: 84 EGRYCVLTGGEPL---LQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
+ GG+P + L K+ I ETNG P +S ++G
Sbjct: 155 KVTCICYFGGDPAPFSPYAIRVAQEILKKKKIRICWETNGLENPRIMRRIARLSEESGGI 214
Query: 141 LKIKGGQELKLVFPQV 156
+KI V+ +
Sbjct: 215 VKIDWKAYSPEVYEAL 230
>gi|332158225|ref|YP_004423504.1| arylsulfatase regulatory protein, putative [Pyrococcus sp. NA2]
gi|331033688|gb|AEC51500.1| arylsulfatase regulatory protein, putative [Pyrococcus sp. NA2]
Length = 472
Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 41/189 (21%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYC 88
CNL +C +C + G +KGG ++ + +K
Sbjct: 99 CNL-----------RCPYC---YEGDIKSKGGLLTREKIETILTFASAYAQGDKKPTISV 144
Query: 89 VLTGGEPLLQV---------DVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC----VSP 135
GGEPLL + + R + TNGT+ +D I S
Sbjct: 145 SFYGGEPLLNWKGCEYTLQRLEEMKENKEIRDYSAGFVTNGTLINEDIVDAINNYNVYSM 204
Query: 136 KAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+ D + + + + + +F +L+ +
Sbjct: 205 QITLDGPKEIHDKRRIKSNGEGTFDQIIENIKLLNRRIANKNF-HLALRINVDKTNYKKI 263
Query: 186 NLAISYCFQ 194
+ +
Sbjct: 264 PELLDFLKD 272
>gi|302385232|ref|YP_003821054.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
gi|302195860|gb|ADL03431.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
Length = 407
Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 26/148 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + A C ++D +I+ + L
Sbjct: 101 CNLRCLHCYNVSDAHCD--------------VIMSLDNYKKVIDNLI---NMGVKKVQLI 143
Query: 92 GGEPLLQV--DVPLIQALNKRGFEIAVETNG-------TIEPPQGIDWICVSPKAGCDLK 142
GGEPL + +++ + I + TNG + + +S + + +
Sbjct: 144 GGEPLFEKQFLKDMLEYTISKFSFIEIFTNGTLLSEEWFNYFSENNIHVALSVYSYSEDE 203
Query: 143 IKGGQELKLVFPQVNVSPENYIGFDFER 170
+K + + N + E D
Sbjct: 204 HDKVTGMKGSWERTNKTIEELKKRDIAY 231
>gi|297616758|ref|YP_003701917.1| molybdenum cofactor biosynthesis protein A [Syntrophothermus
lipocalidus DSM 12680]
gi|297144595|gb|ADI01352.1| molybdenum cofactor biosynthesis protein A [Syntrophothermus
lipocalidus DSM 12680]
Length = 326
Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 24/176 (13%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPL--- 96
DR + +CR+C G++ +++++ +I+ + R LTGGEPL
Sbjct: 18 DRCNLRCRYC-MPEAGVELKPHSEILSLEEIHRIIK---VGTRVGIRKVRLTGGEPLVRR 73
Query: 97 -LQVDVPLIQALNKRGFEIAVETNGTIEP-------PQGIDWICVSPKAGCDLKIKGGQE 148
L V +I+ ++ ++A+ TNG + P G+ + VS K
Sbjct: 74 NLSRLVQMIRTIDLID-DVAITTNGLLFPEMAGELKEAGLHRLNVSLDTMNPEKYSFITR 132
Query: 149 LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCF----QNPKWRL 200
Q + E + +F + + N + + +C R
Sbjct: 133 NGS-LKQALRAIETALALEFHPVKINTV--VMRGINDDEIMDFCRLAYNHRLHVRF 185
>gi|209514929|ref|ZP_03263798.1| Radical SAM domain protein [Burkholderia sp. H160]
gi|209504555|gb|EEA04542.1| Radical SAM domain protein [Burkholderia sp. H160]
Length = 311
Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 47/177 (26%), Gaps = 26/177 (14%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE-KEGRY 87
+GCNL C+FC +K + A E + E +
Sbjct: 36 TAGCNLA-----------CKFC----QNWDISKSREMDTLADAATPEAIALAAETHGCKS 80
Query: 88 CVLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKG 145
T +P++ + + A + RG T G + D+ A DLK
Sbjct: 81 VAFTYNDPVIFAEYAMDVANACHARGIMTVAVTAGYMGAQARRDFYATMDAANVDLKAFT 140
Query: 146 GQ--------ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
L V + + L P E + A +
Sbjct: 141 DDFYFRVTGSHLAPVLETLQYLRHETGVWLEITTLLIPGKNDSSVEIRSEAQWLMKE 197
>gi|110798850|ref|YP_696474.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
ATCC 13124]
gi|123148649|sp|Q0TPG6|MOAA_CLOP1 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|110673497|gb|ABG82484.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
ATCC 13124]
Length = 323
Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVR-- 72
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 73 EGVVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 132
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ ++NP
Sbjct: 133 IGTLDKVLYSIEKCLENNVKVKINTIIL---EDFNKDEILDL-INLAYKNP 179
>gi|78043460|ref|YP_359414.1| radical SAM domain-containing protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995575|gb|ABB14474.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 452
Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 18/103 (17%)
Query: 25 VFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKE 84
F CNL C +C + + + +D + + + + E E
Sbjct: 92 FFVPTYNCNL-----------ACSYCFQQGIKDKKDLPTKEVLDAFFNYVNQNFKN-EPE 139
Query: 85 GRYCVLTGGEPLL------QVDVPLIQALNKRGFEIAVETNGT 121
+ L GGEPL+ +V + G+E+++ TNG
Sbjct: 140 KPFLTLFGGEPLIASEYQKEVIAYFLYQAKINGYEVSIVTNGY 182
>gi|168210846|ref|ZP_02636471.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
B str. ATCC 3626]
gi|170711112|gb|EDT23294.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
B str. ATCC 3626]
Length = 331
Score = 35.6 bits (81), Expect = 4.1, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 83 --VVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 140
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ ++NP
Sbjct: 141 IGTLDKVLYSIEKCLENNVKVKINTIIL---EDFNKDEILDL-INLAYKNP 187
>gi|325294454|ref|YP_004280968.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064902|gb|ADY72909.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 222
Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +R G+ L E+ + +++
Sbjct: 33 CNLNCYHCHNRHGY-------------NEYKGKKEKLSYKKLKEKLLMLKALGVELIIIS 79
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIE 123
GGEP L+ ++ + GF + V+TNGT
Sbjct: 80 GGEPTLEKKLEEGLRFIRSLGFSVRVDTNGTNP 112
>gi|209549618|ref|YP_002281535.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226707377|sp|B5ZRM8|MOAA_RHILW RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|209535374|gb|ACI55309.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 348
Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 19/163 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR +C +C K +++L L G K+ R LTGGEPL++ +
Sbjct: 38 DRCDFRCTYC-MAENMTFLPKKDLLTLEELDRLCSAFVAKGVKKIR---LTGGEPLVRKN 93
Query: 101 VPLIQALNKRGF-----EIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKGG-- 146
+ + E+ + TNG+ G+ I VS K +
Sbjct: 94 IMYLVRRLGEKIGAGLDEVTLTTNGSQLSRHAEELYDCGVRRINVSLDTLDPDKFRKITR 153
Query: 147 -QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLA 188
+ V ++ + + I +L+ + + E A
Sbjct: 154 WGDFAKVMEGIDAAQKAGIKIKLNAVALKDFNDAEMPEIMRFA 196
>gi|323975862|gb|EGB70958.1| radical SAM superfamily protein [Escherichia coli TW10509]
Length = 287
Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 54/197 (27%), Gaps = 42/197 (21%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQ----------------------- 46
F + G G R+A+F GCNL + +
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVNSK 68
Query: 47 -------CRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--L 97
C CDT + D + ++GGE L
Sbjct: 69 VVWNAAVCEQCDTCLK-MCPQHATPMAQSMNVDEVLSHVRKAVLFIEGITVSGGEATTQL 127
Query: 98 QVDVPLIQALNKRGFEIAV----ETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVF 153
V L A+ + ++NG + + V A DLK GG + +
Sbjct: 128 PFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGGACHQQLT 187
Query: 154 PQVNVSPENYIGFDFER 170
+ N + I ER
Sbjct: 188 GRDNQQIKRSISLLAER 204
>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
Length = 342
Score = 35.6 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 39/154 (25%), Gaps = 15/154 (9%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
RF N Q + +C FC G K ++ D + K
Sbjct: 98 RFG--NTACVSTQVGCNMRCSFC----ASAIGGKVRDLKASEMVDQVMSIDSDYGKISNI 151
Query: 88 CVLTGGEPLLQVDVPLIQALNKRG--------FEIAVETNGTIEPPQGIDWICVSPKAGC 139
++ GEP D + I + T G I +
Sbjct: 152 VLMGSGEPFDNYDEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSI 211
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
L EL+ +N + ++ +
Sbjct: 212 SLHAPN-DELRTQLMPINKAYPLEELMKACKYYI 244
>gi|302669258|ref|YP_003832408.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302396922|gb|ADL35826.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 495
Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 31 GCN---LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85
GCN L + C C GT G ++ + + + ++ + G
Sbjct: 115 GCNIPWLILFDPTSACNMHCAGC------WSGTYGPKHNLSFEDMDKIVTQGKELGVY-- 166
Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETN 119
++TGGEPL++ L A E ++ TN
Sbjct: 167 -LYMMTGGEPLVRKKDILKLAEKHNDVEFSIYTN 199
>gi|736276|emb|CAA56172.1| cofactor modifying protein [Pyrococcus furiosus DSM 3638]
Length = 357
Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 42 RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
R + +C C F + G + D ++ + + GEP +
Sbjct: 11 RCNLRCEMC---FKQHWEDEEGDMDYDLFLKILRRCREVSRAKDDILRRSIGEPTVHPRF 67
Query: 101 VPLIQALNKRGFEIAVETNG 120
+ +++ + KRGF + + TNG
Sbjct: 68 MDMVREVKKRGFALGISTNG 87
>gi|18310772|ref|NP_562706.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
str. 13]
gi|20141618|sp|Q9WX96|MOAA_CLOPE RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|18145453|dbj|BAB81496.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
str. 13]
Length = 323
Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 75 --IVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 132
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ +NP
Sbjct: 133 IGTLDKVLYSIEKCLENNVKVKINTVIL---EDFNKDEILDL-INLACENP 179
>gi|226948345|ref|YP_002803436.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
gi|226840836|gb|ACO83502.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 297
Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 20/101 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + + ++ ++ D I +Q
Sbjct: 20 CNL-----------ACDFC------PETRRKPQFMPIEIFDKILDQI--KPYTDYIYFHV 60
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GEPLL D+ + K+ F++ + TNGT+ I
Sbjct: 61 KGEPLLHPDIDKFLDLSYKKDFKVNITTNGTLINKAKDKII 101
>gi|48478129|ref|YP_023835.1| molybdenum cofactor biosynthesis protein A [Picrophilus torridus
DSM 9790]
gi|48430777|gb|AAT43642.1| putative molybdopterin cofactor synthesis protein A [Picrophilus
torridus DSM 9790]
Length = 310
Score = 35.6 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 23/170 (13%)
Query: 47 CRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
C FC ++GT D++ ++ + +TGGEPLL+ D+ I
Sbjct: 31 CMFCH-----MEGTDRNLSYMTPDEIERVV---RVAASFGVSRIKITGGEPLLRHDIIDI 82
Query: 105 QALNKRGF-EIAVETNGTIEPPQGIDWICVSPKAGC--DLKIKGGQELKLVFPQVNVSPE 161
KR +I++ TNG + + K + LK+ N PE
Sbjct: 83 IKRIKRHVDDISMTTNGVMLHKLAYELKDAGLKRINISMHALNDNDYLKITGNTRNFRPE 142
Query: 162 NYIGFDFERFS-LQPMDGPF------LEENTNLAISYCFQNPKWRLSVQT 204
G + L+P+ F ++ N + +C +N +Q
Sbjct: 143 VIDGIKSAHLAGLEPVKVNFVVLKGINDDKINDMMDFCLENDAV---LQL 189
>gi|260892143|ref|YP_003238240.1| Radical SAM domain protein [Ammonifex degensii KC4]
gi|260864284|gb|ACX51390.1| Radical SAM domain protein [Ammonifex degensii KC4]
Length = 337
Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCN C FC + ++G ++ + + T
Sbjct: 80 GCNF-----------HCLFC----QNWEISQGNPPTINLEPTQVLDMLRTQGSRCIGVAY 124
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
T EP++ + + + + + G++ + TNG I + DLK +
Sbjct: 125 TYSEPIVWYEFVLDTAKLVKEAGYKNVLVTNGFINEEPLYKLLPYVDAMNIDLKSFRDE 183
>gi|242278715|ref|YP_002990844.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
gi|242121609|gb|ACS79305.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
Length = 394
Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + + + + ++I++ + +
Sbjct: 50 CNLKCVHCYAQA-------------VDPDGKDEISTSKAKEIIDDL---AAFGAPVMLFS 93
Query: 92 GGEPLLQ-VDVPLIQALNKRGFEIAVETNG 120
GGEPL++ V L +G + TNG
Sbjct: 94 GGEPLVRKDLVELASYATGKGMRAVISTNG 123
>gi|163943138|ref|YP_001648022.1| radical SAM domain-containing protein [Bacillus weihenstephanensis
KBAB4]
gi|229170160|ref|ZP_04297847.1| Radical SAM domain protein [Bacillus cereus AH621]
gi|163865335|gb|ABY46394.1| Radical SAM domain protein [Bacillus weihenstephanensis KBAB4]
gi|228613305|gb|EEK70443.1| Radical SAM domain protein [Bacillus cereus AH621]
Length = 292
Score = 35.6 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|297618148|ref|YP_003703307.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
gi|297145985|gb|ADI02742.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
Length = 451
Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVD-QLADLIEEQWITGEKEGRYCVLTGGEPLL 97
DR + +C+ C G + ++ +L D I ++ E + + +GGEPLL
Sbjct: 117 PTDRCNLRCKGC------WAGEYAKKNDLTFELMDRIVKEGE--ELNIFFYLFSGGEPLL 168
Query: 98 QVDVPLIQALNKRGFEIAVETNG 120
+ D L A + TNG
Sbjct: 169 RKDDILKLAKKHPDSVFHIFTNG 191
>gi|65317439|ref|ZP_00390398.1| COG0535: Predicted Fe-S oxidoreductases [Bacillus anthracis str.
A2012]
Length = 284
Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 7 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 48
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 49 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 77
>gi|315645364|ref|ZP_07898489.1| Radical SAM domain protein [Paenibacillus vortex V453]
gi|315279406|gb|EFU42712.1| Radical SAM domain protein [Paenibacillus vortex V453]
Length = 291
Score = 35.6 bits (81), Expect = 4.5, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + N ++ D +
Sbjct: 15 CNL-----------ACTFC--------PPTERKANFIKVEDFARRLDEIKPHTRYIYLHV 55
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
GEPLL L+ +++GF++ + TNG
Sbjct: 56 KGEPLLHPKIDELLDISHEKGFKVNITTNG 85
>gi|293191986|ref|ZP_06609346.1| ribonucleoside triphosphate reductase activating NrdG [Actinomyces
odontolyticus F0309]
gi|292820409|gb|EFF79397.1| ribonucleoside triphosphate reductase activating NrdG [Actinomyces
odontolyticus F0309]
Length = 287
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ G A ++F GC C +C I G L
Sbjct: 66 TVDWPGRFA--ASLF--LQGCPW-----------ACPYCHNS-AIIDPRIPGVVAWGALE 109
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
DL+ + + V +GGE Q+ + + + GF + + T G
Sbjct: 110 DLLARRRGLLDG----VVFSGGEATRQIALGAAMARVRELGFGVGLHTAGPYPR 159
>gi|154687786|ref|YP_001422947.1| molybdenum cofactor biosynthesis protein A [Bacillus
amyloliquefaciens FZB42]
gi|166217238|sp|A7Z9P0|MOAA_BACA2 RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|154353637|gb|ABS75716.1| MoaA [Bacillus amyloliquefaciens FZB42]
Length = 341
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWI--TGEKEGRYCVLTGGEPLLQ 98
DR + +C +C + + + +E G LTGGEPL++
Sbjct: 25 DRCNFRCTYCMPAELFGPDYPFLQKTELLSFEELERLAKLFVGRFGVEKIRLTGGEPLMR 84
Query: 99 VDVPLIQALNKR--GFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGGQ 147
D+P + R G + IA+ TNG G+ + VS + D + K
Sbjct: 85 KDMPELIKKLARIPGLKDIAMTTNGSLLPVYAEKLKQAGLHRVTVSLDSLEDERFKAIN 143
>gi|327311467|ref|YP_004338364.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
uzoniensis 768-20]
gi|326947946|gb|AEA13052.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
uzoniensis 768-20]
Length = 341
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 18/146 (12%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ-V 99
D + C FC F G G N D L++ + + R LTGGEPLL+
Sbjct: 46 DVCNFSCIFCH--FEGQLRGVGRLLNADDYGFLVD---VLSKVGVRDYKLTGGEPLLRSD 100
Query: 100 DVPLIQALNKRGFEIAVETNGTI-------EPPQGIDWICVSPKAGCDLKIKG-----GQ 147
V +++ +N+ G EI++ TNG G+ + VS K +
Sbjct: 101 IVDIVRKMNRDGVEISMTTNGFRLAELAEDLAAAGLRRVNVSVHTTDPEKFSKVAGVPKE 160
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSL 173
+ V V+ + + + L
Sbjct: 161 WFRRVLDGVHAAVKAGMKVKLNAVLL 186
>gi|229088605|ref|ZP_04220259.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
gi|228694712|gb|EEL48034.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
Length = 292
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V++ + +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFLSVEEFSKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|256828055|ref|YP_003156783.1| molybdenum cofactor biosynthesis protein A [Desulfomicrobium
baculatum DSM 4028]
gi|256577231|gb|ACU88367.1| molybdenum cofactor biosynthesis protein A [Desulfomicrobium
baculatum DSM 4028]
Length = 330
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
DR + +C +C + +++A+L++ + E LTGGEP + D
Sbjct: 19 DRCNLRCLYCRPQSEWTFMPHEQILSFEEMAELVD---VAKEAGVEKVRLTGGEPFARKD 75
Query: 101 -VPLIQALNKR--GFEIAVETNG 120
+P L+ + ++ + TNG
Sbjct: 76 FIPFTGRLHAKYPDLDLRITTNG 98
>gi|261409709|ref|YP_003245950.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
Y412MC10]
gi|261286172|gb|ACX68143.1| molybdenum cofactor biosynthesis protein A [Paenibacillus sp.
Y412MC10]
Length = 334
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYN-VDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
DR + +C +C + +G + ++ + ++ + LTGGEPL++
Sbjct: 22 DRCNLRCVYC----MPEEGMEFQPHDQIMSYEEIASIMRVLAPMGVSKVRLTGGEPLVRK 77
Query: 100 DVP--LIQALNKRGFE-IAVETNGTI 122
D+ + Q + G + I++ TNG +
Sbjct: 78 DLETLVHQIASIEGVQDISLTTNGIM 103
>gi|218906638|ref|YP_002454472.1| hypothetical protein BCAH820_5552 [Bacillus cereus AH820]
gi|218537395|gb|ACK89793.1| conserved hypothetical protein [Bacillus cereus AH820]
Length = 292
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|206975908|ref|ZP_03236819.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217962951|ref|YP_002341529.1| hypothetical protein BCAH187_A5642 [Bacillus cereus AH187]
gi|222098935|ref|YP_002532993.1| hypothetical protein BCQ_5304 [Bacillus cereus Q1]
gi|206746002|gb|EDZ57398.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217067946|gb|ACJ82196.1| conserved hypothetical protein [Bacillus cereus AH187]
gi|221242994|gb|ACM15704.1| conserved hypothetical protein [Bacillus cereus Q1]
Length = 292
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|154508090|ref|ZP_02043732.1| hypothetical protein ACTODO_00583 [Actinomyces odontolyticus ATCC
17982]
gi|153797724|gb|EDN80144.1| hypothetical protein ACTODO_00583 [Actinomyces odontolyticus ATCC
17982]
Length = 287
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 12 TLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA 71
T+ G A ++F GC C +C I G L
Sbjct: 66 TVDWPGKFA--ASLF--LQGCPW-----------ACPYCHNS-AIIDPRIPGVVAWGALE 109
Query: 72 DLIEEQWITGEKEGRYCVLTGGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEP 124
DL+ + + V +GGE Q+ + + + GF + + T G
Sbjct: 110 DLLARRRGLLDG----VVFSGGEATRQIALGAAMARVRELGFGVGLHTAGPYPR 159
>gi|30023483|ref|NP_835114.1| molybdenum cofactor biosynthesis protein [Bacillus cereus ATCC
14579]
gi|229051126|ref|ZP_04194670.1| Radical SAM domain protein [Bacillus cereus AH676]
gi|229130703|ref|ZP_04259656.1| Radical SAM domain protein [Bacillus cereus BDRD-Cer4]
gi|229148338|ref|ZP_04276621.1| Radical SAM domain protein [Bacillus cereus BDRD-ST24]
gi|296505878|ref|YP_003667578.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
BMB171]
gi|29899044|gb|AAP12315.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S
oxidoreductases [Bacillus cereus ATCC 14579]
gi|228635132|gb|EEK91679.1| Radical SAM domain protein [Bacillus cereus BDRD-ST24]
gi|228652720|gb|EEL08605.1| Radical SAM domain protein [Bacillus cereus BDRD-Cer4]
gi|228722189|gb|EEL73590.1| Radical SAM domain protein [Bacillus cereus AH676]
gi|296326930|gb|ADH09858.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
BMB171]
Length = 292
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|18978436|ref|NP_579793.1| arylsulfatase regulatory protein, putative [Pyrococcus furiosus DSM
3638]
gi|18894280|gb|AAL82188.1| arylsulfatase regulatory protein, putative [Pyrococcus furiosus DSM
3638]
Length = 472
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 41/189 (21%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYN---VDQLADLIEEQWITGEKEGRYC 88
CNL +C +C + G +KGG ++ + +K
Sbjct: 99 CNL-----------RCPYC---YEGDIKSKGGLLTREKIETILTFASAHAQGDKKPTISV 144
Query: 89 VLTGGEPLLQV---------DVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC----VSP 135
GGEPLL + + R + TNGT+ +D I S
Sbjct: 145 SFYGGEPLLNWKGCEYTLQRLEEMKENKEIRDYSAGFVTNGTLINEDIVDAINNYNVYSM 204
Query: 136 KAGCDLKIKGGQE----------LKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENT 185
+ D + + + + + +F +L+ +
Sbjct: 205 QITLDGPKEIHDKRRIKSNGEGTFDQIIENIKLLNRRIANKNF-HLALRINVDKTNYKKI 263
Query: 186 NLAISYCFQ 194
+ +
Sbjct: 264 PELLDFLKD 272
>gi|86147954|ref|ZP_01066258.1| molybdenum cofactor biosynthesis protein A [Vibrio sp. MED222]
gi|85834279|gb|EAQ52433.1| molybdenum cofactor biosynthesis protein A [Vibrio sp. MED222]
Length = 329
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 18/169 (10%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
D + +C +C D G + + + + ++ + +TGGEP L+
Sbjct: 22 DVCNFKCTYCLPD----GYKPSGQKNSSFLSVPEIKRVVKAFADCGTSKIRITGGEPSLR 77
Query: 99 VDVPLIQALNKR--GF-EIAVETNGTIEPPQGIDW-------ICVSPKA-GCDLKIKGGQ 147
D P I G ++A TNG Q W I VS + + +
Sbjct: 78 KDFPEIIHTVASTPGIEKVATTTNGYRMEKQVGQWRDAGLTHINVSVDSLDSRMFHQITG 137
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
E K + +GF+ + ++ M +E +++ P
Sbjct: 138 ENKFTEVMRGIDKAFEVGFEQVKVNVVLMKDLNSQE-LPAFLNWIKDKP 185
>gi|332112539|gb|EGJ12332.1| radical SAM family protein [Rubrivivax benzoatilyticus JA2]
Length = 389
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 42 RLSAQCRFCDTDFVGI-QGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
R + +C +C + + Y +DQL I +Q E + GGEP L +
Sbjct: 37 RCNLKCSYCSIAEGDVRESQGHVAYTMDQLDAFIAQQLAGKEVYVTFY---GGEPTL--N 91
Query: 101 VPLIQALNKRG--FEIAVETNGTIEPPQGID 129
P I+A+ +R F ++TNGT+
Sbjct: 92 RPFIEAVMQRHPLFRFQLQTNGTLLDDLSHH 122
>gi|169334682|ref|ZP_02861875.1| hypothetical protein ANASTE_01085 [Anaerofustis stercorihominis DSM
17244]
gi|169257420|gb|EDS71386.1| hypothetical protein ANASTE_01085 [Anaerofustis stercorihominis DSM
17244]
Length = 294
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETN 119
G +L D I + + G +GGEPL+Q D + +I+ L + +A+ET+
Sbjct: 98 GEYITPKELVDRIMPEMEYYKTSGGGVTFSGGEPLMQSDFLLEVIKILKENDVNVAIETD 157
Query: 120 GTIEP 124
G ++
Sbjct: 158 GFVDY 162
>gi|30265476|ref|NP_847853.1| hypothetical protein BA_5707 [Bacillus anthracis str. Ames]
gi|42784642|ref|NP_981889.1| hypothetical protein BCE_5597 [Bacillus cereus ATCC 10987]
gi|47531044|ref|YP_022393.1| hypothetical protein GBAA_5707 [Bacillus anthracis str. 'Ames
Ancestor']
gi|47568578|ref|ZP_00239277.1| molybdenum cofactor biosynthesis enzyme and related Fe-S
oxidoreductases [Bacillus cereus G9241]
gi|49188295|ref|YP_031548.1| hypothetical protein BAS5311 [Bacillus anthracis str. Sterne]
gi|49480465|ref|YP_039448.1| molybdenum cofactor biosynthesis enzyme [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|118480486|ref|YP_897637.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
str. Al Hakam]
gi|165872538|ref|ZP_02217171.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167636260|ref|ZP_02394563.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167641439|ref|ZP_02399689.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170689210|ref|ZP_02880407.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170708666|ref|ZP_02899105.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177651819|ref|ZP_02934402.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568908|ref|ZP_03021810.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
gi|196041932|ref|ZP_03109219.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|196045483|ref|ZP_03112714.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|225867439|ref|YP_002752817.1| hypothetical protein BCA_5609 [Bacillus cereus 03BB102]
gi|227818227|ref|YP_002818236.1| hypothetical protein BAMEG_5755 [Bacillus anthracis str. CDC 684]
gi|229112870|ref|ZP_04242401.1| Radical SAM domain protein [Bacillus cereus Rock1-15]
gi|229603794|ref|YP_002869667.1| hypothetical protein BAA_5738 [Bacillus anthracis str. A0248]
gi|254687101|ref|ZP_05150959.1| hypothetical protein BantC_25123 [Bacillus anthracis str.
CNEVA-9066]
gi|254724116|ref|ZP_05185901.1| hypothetical protein BantA1_16873 [Bacillus anthracis str. A1055]
gi|254733622|ref|ZP_05191339.1| hypothetical protein BantWNA_00447 [Bacillus anthracis str. Western
North America USA6153]
gi|254742158|ref|ZP_05199845.1| hypothetical protein BantKB_14293 [Bacillus anthracis str. Kruger
B]
gi|254755932|ref|ZP_05207964.1| hypothetical protein BantV_25964 [Bacillus anthracis str. Vollum]
gi|254761644|ref|ZP_05213664.1| hypothetical protein BantA9_25303 [Bacillus anthracis str.
Australia 94]
gi|300118842|ref|ZP_07056562.1| hypothetical protein BCSJ1_18040 [Bacillus cereus SJ1]
gi|301056922|ref|YP_003795133.1| hypothetical protein BACI_c54500 [Bacillus anthracis CI]
gi|30260154|gb|AAP29339.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|42740574|gb|AAS44497.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|47506192|gb|AAT34868.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|47554820|gb|EAL13172.1| molybdenum cofactor biosynthesis enzyme and related Fe-S
oxidoreductases [Bacillus cereus G9241]
gi|49182222|gb|AAT57598.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|49332021|gb|AAT62667.1| conserved hypothetical protein, possible molybdenum cofactor
biosynthesis enzyme [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118419711|gb|ABK88130.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711761|gb|EDR17305.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167510614|gb|EDR86010.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167528375|gb|EDR91146.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170126448|gb|EDS95336.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170666853|gb|EDT17619.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172082523|gb|EDT67587.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190559975|gb|EDV13958.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
gi|196023690|gb|EDX62366.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|196027187|gb|EDX65807.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|225790086|gb|ACO30303.1| conserved hypothetical protein [Bacillus cereus 03BB102]
gi|227003322|gb|ACP13065.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
gi|228670549|gb|EEL25862.1| Radical SAM domain protein [Bacillus cereus Rock1-15]
gi|229268202|gb|ACQ49839.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
gi|298723810|gb|EFI64532.1| hypothetical protein BCSJ1_18040 [Bacillus cereus SJ1]
gi|300379091|gb|ADK07995.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
gi|324329409|gb|ADY24669.1| hypothetical protein YBT020_27235 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 292
Score = 35.6 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|218900586|ref|YP_002448997.1| hypothetical protein BCG9842_B5367 [Bacillus cereus G9842]
gi|218543276|gb|ACK95670.1| conserved hypothetical protein [Bacillus cereus G9842]
Length = 279
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 2 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 43
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 44 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 72
>gi|169350526|ref|ZP_02867464.1| hypothetical protein CLOSPI_01294 [Clostridium spiroforme DSM 1552]
gi|169292846|gb|EDS74979.1| hypothetical protein CLOSPI_01294 [Clostridium spiroforme DSM 1552]
Length = 353
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 44 SAQCRF-CDTDFVGIQGTKGGRY-NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD- 100
+ +C F C +V + +Y I+ E + +TGGEPLL +
Sbjct: 40 TPRCNFNCKMCYVHLSEKDIPKYGKELSAKKWIDIAKQAKEAGTTWLCITGGEPLLHPEF 99
Query: 101 VPLIQALNKRGFEIAVETN 119
+ L+K GF I ++TN
Sbjct: 100 GKIYTQLSKMGFFITLQTN 118
>gi|168207240|ref|ZP_02633245.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
E str. JGS1987]
gi|170661412|gb|EDT14095.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
E str. JGS1987]
Length = 331
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 83 --IVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 140
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ +NP
Sbjct: 141 IGTLDKVLYSIEKCLENNVKVKINTVIL---EDFNKDEILDL-INLACENP 187
>gi|169343771|ref|ZP_02864770.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
C str. JGS1495]
gi|169298331|gb|EDS80421.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
C str. JGS1495]
Length = 331
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 83 --IVDLIKNINKIPEIEEICSTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 140
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ +NP
Sbjct: 141 IGTLDKVLYSIEKCLENNVKVKINTVIL---EDFNKDEILDL-INLACENP 187
>gi|52145264|ref|YP_086721.1| molybdenum cofactor biosynthesis enzyme [Bacillus cereus E33L]
gi|51978733|gb|AAU20283.1| conserved hypothetical protein; possible molybdenum cofactor
biosynthesis enzyme [Bacillus cereus E33L]
Length = 292
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|75762369|ref|ZP_00742244.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S
oxidoreductases [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|206970162|ref|ZP_03231115.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|218231649|ref|YP_002370232.1| hypothetical protein BCB4264_A5580 [Bacillus cereus B4264]
gi|228903941|ref|ZP_04068051.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
gi|228942606|ref|ZP_04105138.1| Radical SAM domain protein [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228955708|ref|ZP_04117703.1| Radical SAM domain protein [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228961721|ref|ZP_04123325.1| Radical SAM domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228968591|ref|ZP_04129576.1| Radical SAM domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228975536|ref|ZP_04136088.1| Radical SAM domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228982172|ref|ZP_04142461.1| Radical SAM domain protein [Bacillus thuringiensis Bt407]
gi|229072922|ref|ZP_04206118.1| Radical SAM domain protein [Bacillus cereus F65185]
gi|229083004|ref|ZP_04215419.1| Radical SAM domain protein [Bacillus cereus Rock4-2]
gi|229153615|ref|ZP_04281792.1| Radical SAM domain protein [Bacillus cereus m1550]
gi|74490145|gb|EAO53486.1| Molybdenum cofactor biosynthesis enzyme and related Fe-S
oxidoreductases [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|206734739|gb|EDZ51908.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|218159606|gb|ACK59598.1| conserved hypothetical protein [Bacillus cereus B4264]
gi|228629844|gb|EEK86496.1| Radical SAM domain protein [Bacillus cereus m1550]
gi|228700305|gb|EEL52876.1| Radical SAM domain protein [Bacillus cereus Rock4-2]
gi|228710168|gb|EEL62146.1| Radical SAM domain protein [Bacillus cereus F65185]
gi|228777524|gb|EEM25802.1| Radical SAM domain protein [Bacillus thuringiensis Bt407]
gi|228784146|gb|EEM32173.1| Radical SAM domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228791083|gb|EEM38700.1| Radical SAM domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228797956|gb|EEM44965.1| Radical SAM domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228803936|gb|EEM50560.1| Radical SAM domain protein [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228817032|gb|EEM63125.1| Radical SAM domain protein [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228855699|gb|EEN00249.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
gi|326943255|gb|AEA19151.1| molybdenum cofactor biosynthesis protein [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 292
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ A +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFISVEDFAKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|300245649|gb|ADJ93882.1| putative benzylsuccinate synthase BssD [Clostridia bacterium
enrichment culture clone BF]
Length = 312
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 17/44 (38%)
Query: 11 LTLQ-GEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTD 53
+LQ G G +F GC L +C +C
Sbjct: 12 YSLQDGPGFRT---TIF--LKGCPL-----------RCPWCHNP 39
>gi|150400192|ref|YP_001323959.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus vannielii SB]
gi|150012895|gb|ABR55347.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Methanococcus vannielii SB]
Length = 236
Score = 35.6 bits (81), Expect = 4.7, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 23/103 (22%)
Query: 23 VAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGE 82
VF + CN++ G Q+ + ++ + ++ +
Sbjct: 20 AVVF--LAECNMYCGYCQNYEFI-------------TKNISEMSAKEVFESMDLMFADA- 63
Query: 83 KEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNGTIE 123
V++GGEP LQ + L + ++ F + ++TNGT
Sbjct: 64 -----LVISGGEPTLQPEAVKELCKLAKEKNFPVKLDTNGTNP 101
>gi|327468552|gb|EGF14031.1| transcriptional regulator [Streptococcus sanguinis SK330]
Length = 430
Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 40 QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
+ +C++C + + + + EE+ + GGEPLL
Sbjct: 85 HGDCNFRCKYC---YEHFKNIGMSIETENAILKFAEEKLSNSQYHFLRIAWFGGEPLLGY 141
Query: 100 DV------PLIQALNKRG--FEIAVETNGT 121
++ + G + ++ TNG
Sbjct: 142 KTIQRLSLEFLKICERFGITYSASITTNGF 171
>gi|262199037|ref|YP_003270246.1| radical SAM protein [Haliangium ochraceum DSM 14365]
gi|262082384|gb|ACY18353.1| Radical SAM domain protein [Haliangium ochraceum DSM 14365]
Length = 362
Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 38/195 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ + + R + L I +
Sbjct: 88 TAGCNLGCKFCQNW------------SISKAREWERLSERALPGDIAAA--AERHACKSV 133
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTI------EPPQGIDWICVSPKAGCD 140
T +P++ + + + A +RG T G + E +D + V KA +
Sbjct: 134 AFTYNDPVIFAEYAIDVAAACRERGIRTVAVTAGYLTEQARPEFFAAMDAVNVDLKAFRE 193
Query: 141 LKIK--GGQELKLVFPQVN-VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ--- 194
L+ V + + E I F+ L P E + Q
Sbjct: 194 SFYHTLTFSHLEPVLDSLRYLRNETDIWFEVTTL-LIPGHNDDDESLHRQCEWFVRQLGP 252
Query: 195 ---------NPKWRL 200
+P +R+
Sbjct: 253 EVPLHFSAFHPDYRM 267
>gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1]
gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 535
Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 139 CDLKIKGGQELKLVFPQVNVSPENYIGFDFE--RFSLQPMDGPFLEENTNLAISYCFQNP 196
+K +++ +VF + + D E F L+P+D E+ A+ +
Sbjct: 84 RQIKTLNERQMVVVFSAHGEAKYLFELIDLEVMHFILKPIDIERFEKVLADAVEIILKRR 143
Query: 197 KWRLSVQTH 205
++R Q H
Sbjct: 144 QYR---QMH 149
>gi|54639983|gb|AAV36526.1| hypothetical protein [Campylobacter jejuni]
Length = 319
Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL CD Q K G Y ++Q +++ + E L
Sbjct: 74 CNLNCFS-----------CDN---FSQIAKKGYYELNQFEKDVQKIFHITEGMVEQFYLA 119
Query: 92 GGEPLLQVDVPLIQALNKRGFE---IAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
GGEPL+ D + ++ F+ I + TNG + P Q + + K +
Sbjct: 120 GGEPLMNKDCKEYFYILRKYFKNNSIWLITNGILLPKQDNSFW-KALKENNIILRPTKYP 178
Query: 149 LKLVFPQVNVSPENY 163
LK+ + + + Y
Sbjct: 179 LKIDWENIKQKCKEY 193
>gi|91774113|ref|YP_566805.1| molybdenum cofactor biosynthesis protein A [Methanococcoides
burtonii DSM 6242]
gi|91713128|gb|ABE53055.1| Molybdenum cofactor biosynthesis protein A [Methanococcoides
burtonii DSM 6242]
Length = 318
Score = 35.6 bits (81), Expect = 4.8, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C + ++ ++ + +
Sbjct: 27 CNLD-----------CIYC---HSEGDEGSRKEMSAKTISVIVSA---AAKFGVNKVKFS 69
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
GGEPL++ D I + +++V TNG
Sbjct: 70 GGEPLVRKDFEDILRKLPKLKDVSVTTNGVF 100
>gi|15920846|ref|NP_376515.1| hypothetical protein ST0626 [Sulfolobus tokodaii str. 7]
gi|15621630|dbj|BAB65624.1| 350aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 350
Score = 35.6 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
LW + + C +C F G +Y++ +L + IE + + + GG
Sbjct: 2 LWLVLTTGKCNLTCDYCGGSFPSHIVPWGVKYDIQKLKNAIE------KDQNATVIFYGG 55
Query: 94 EPLLQVDVPLIQALNKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLKIKG 145
EPL+ + N + ++TNG + + + + K +G
Sbjct: 56 EPLMNPKFIMQVMDNIKAKRWGIQTNGVAVKLLPERYWKKMNVALLSIDGREEITDKHRG 115
Query: 146 GQELKLVFPQVNVSPE 161
K+V E
Sbjct: 116 KGVYKVVVKHAKYLKE 131
>gi|182701901|ref|ZP_02617584.2| radical SAM domain protein [Clostridium botulinum Bf]
gi|237794363|ref|YP_002861915.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
gi|182673949|gb|EDT85910.1| radical SAM domain protein [Clostridium botulinum Bf]
gi|229264062|gb|ACQ55095.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
Length = 297
Score = 35.3 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +++ ++++ + +
Sbjct: 20 CNL-----------ACDFC--PQTRRKPQF---MSIEIFDKILDQIKPYTDYIYFHVK-- 61
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
GEPLL D+ + K+GF++ + TNGT+ I
Sbjct: 62 -GEPLLHPDIDKFLDLSYKKGFKVNITTNGTLINKVKDKII 101
>gi|70948819|ref|XP_743877.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56523585|emb|CAH84934.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 379
Score = 35.3 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 22/180 (12%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
Q S C+FC T +GI+ + +D++ D + + GEP
Sbjct: 102 CISSQIGCSFGCKFCATGQIGIK----RQLELDEITDQLLYFQSKNVNIKNVSFMGMGEP 157
Query: 96 LLQVDV-PLIQALNKRGF------EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
L +V I+ N F I + T G + + ++ + L +E
Sbjct: 158 LANPNVFEAIRFFNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEE 217
Query: 149 LKLVFPQVNVSP--------ENYIGFDFERFSLQPMDGPFLEENTNLAI---SYCFQNPK 197
+ P + P ++ I R + + + ++T+ A + + P
Sbjct: 218 RDQLVPINKLFPFHEVLDLLDDRIAKTSRRVWISYILIKDVNDSTDHAEALCDHILKRPP 277
>gi|172039984|ref|YP_001799698.1| radical SAM domain-containing protein [Corynebacterium urealyticum
DSM 7109]
gi|171851288|emb|CAQ04264.1| radical SAM domain protein [Corynebacterium urealyticum DSM 7109]
Length = 244
Score = 35.3 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 30/121 (24%), Gaps = 32/121 (26%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---------- 71
VF GC L +C +C + GG L
Sbjct: 31 TATVF--TQGCPL-----------RCVYCHNAQLQEFPVVGGGEPAADLGGAGEGSGGTR 77
Query: 72 --------DLIEEQWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGFEIAVETNGTI 122
E V++GGEP + A GF + + T+G
Sbjct: 78 GAEGRPLFSDALELMERRRGMLDGLVISGGEPLAAAGLAAALAATKVAGFPVGLHTSGYA 137
Query: 123 E 123
Sbjct: 138 P 138
>gi|323701651|ref|ZP_08113323.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
nigrificans DSM 574]
gi|323533424|gb|EGB23291.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
nigrificans DSM 574]
Length = 311
Score = 35.3 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI--QALNKRGFEIAVETN 119
G +V+++ ++EE I + G L+GGEPLLQ + + +RG + A+ET
Sbjct: 116 GKYMSVEEVLKIVEEDSIFYARSGGGLTLSGGEPLLQAEFVYKLLKEAKERGMDTAIETC 175
Query: 120 GTIEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
G ++ + D+K G + K
Sbjct: 176 GYVDWKKAEPVFKYLNTVFFDIKCVDGNKHKQ 207
>gi|152991490|ref|YP_001357212.1| [pyruvate formate-lyase]-activating enzyme [Nitratiruptor sp.
SB155-2]
gi|151423351|dbj|BAF70855.1| [pyruvate formate-lyase]-activating enzyme [Nitratiruptor sp.
SB155-2]
Length = 340
Score = 35.3 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 48/172 (27%), Gaps = 23/172 (13%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL Q+ +Q Q + D + E
Sbjct: 82 GCNLSCSFCQNFEISQ---------FPQEHDHKIFGHDLMPQQAVEL--ALHHGCSSIAY 130
Query: 91 TGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDL------- 141
T EP++ + + +++G + T+G V DL
Sbjct: 131 TYNEPIVWFEYSYDTAKLAHEKGLKNIYVTSGYETRKAMDKLAGVIDGMNIDLKAFTDRF 190
Query: 142 -KIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC 192
K + G LK V + + + I + + D EE ++
Sbjct: 191 YKEQCGARLKPVLEAIEYAYKKDIWIEITTLFIP--DQNDSEEEMRQIANFI 240
>gi|149187459|ref|ZP_01865757.1| putative pyruvate formate-lyase activating enzyme [Vibrio shilonii
AK1]
gi|148838995|gb|EDL55934.1| putative pyruvate formate-lyase activating enzyme [Vibrio shilonii
AK1]
Length = 316
Score = 35.3 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETN 119
G V+Q+ + + + +K G L+GGE L + + L + + VETN
Sbjct: 119 GKEMTVEQVFAEVIKDKVYFDKSGGGITLSGGEALKQFEFCLALAKMCKANDVHVCVETN 178
Query: 120 G 120
G
Sbjct: 179 G 179
>gi|146310203|ref|YP_001175277.1| radical SAM domain-containing protein [Enterobacter sp. 638]
gi|145317079|gb|ABP59226.1| Radical SAM domain protein [Enterobacter sp. 638]
Length = 286
Score = 35.3 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 10 FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQD-RLSAQCRFC 50
F + G G R+A+F GCNL + +C C
Sbjct: 14 FSCVDGPGS---RLALF--LQGCNLRCKTCHNPWTIGRCNDC 50
>gi|266622695|ref|ZP_06115630.1| putative pyruvate formate-lyase activating enzyme [Clostridium
hathewayi DSM 13479]
gi|288865560|gb|EFC97858.1| putative pyruvate formate-lyase activating enzyme [Clostridium
hathewayi DSM 13479]
Length = 316
Score = 35.3 bits (80), Expect = 5.1, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 9/153 (5%)
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G +V++ I E+ G ++GGEPL+Q D L QA G + E+
Sbjct: 108 WGKSMSVEECMKEIRRDKGYYERSGGGVTVSGGEPLIQSDFVAELFQACRDEGIQTCCES 167
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKL---VFPQVNVSPENYIGFDFERFSL-Q 174
+ + + V+ D+K + K V ++ + + L
Sbjct: 168 TFHADWKEIEKILPVTDIMISDIKHMDPEIHKEYTGVTNDRILANLKRLTEEERELILRI 227
Query: 175 PMDGP--FLEENTNLAISYCFQNPKWRL-SVQT 204
P+ ++N + R+ ++Q
Sbjct: 228 PVIPHVNDDKKNMEATADFIRNELGGRVRTLQL 260
>gi|152991887|ref|YP_001357608.1| heme d1 biosynthesis protein NirJ [Sulfurovum sp. NBC37-1]
gi|151423748|dbj|BAF71251.1| heme d1 biosynthesis protein NirJ [Sulfurovum sp. NBC37-1]
Length = 376
Score = 35.3 bits (80), Expect = 5.1, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + + + + + + G ++ + +
Sbjct: 33 CNLSC--------LHC------YSKADLDAVDTLTTENIMETLPKLKANG---VKFLIFS 75
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNGTI 122
GGEPL + D+ + + G + TNG
Sbjct: 76 GGEPLTRKDLFDIAARCKELGIVTYLSTNGLY 107
>gi|59711547|ref|YP_204323.1| molybdenum cofactor biosynthesis protein A [Vibrio fischeri ES114]
gi|197334893|ref|YP_002155703.1| molybdenum cofactor biosynthesis protein A [Vibrio fischeri MJ11]
gi|59479648|gb|AAW85435.1| molybdopterin biosynthesis protein A [Vibrio fischeri ES114]
gi|197316383|gb|ACH65830.1| molybdenum cofactor biosynthesis protein A [Vibrio fischeri MJ11]
Length = 329
Score = 35.3 bits (80), Expect = 5.1, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 17/144 (11%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
D + +C +C D G + G R + +L ++ +TGGEP L+
Sbjct: 22 DVCNFKCTYCLPD----GYKPENGKRESFLELDEIERTVSAFARCGTSKVRITGGEPSLR 77
Query: 99 VDVPLIQALNKR--GF-EIAVETNGTIEPPQGIDW-------ICVSPKA-GCDLKIKGGQ 147
D I G ++A TNG +W I VS + + +
Sbjct: 78 KDFTDIIRTVASQPGITKVATTTNGYRMEKHVAEWREAGLTDINVSVDSLNPHMFYQITG 137
Query: 148 ELKLVFPQVNVSPENYIGFDFERF 171
E K + +GF +
Sbjct: 138 ENKFAEVMAGIDKALEVGFKQVKV 161
>gi|218708979|ref|YP_002416600.1| molybdenum cofactor biosynthesis protein A [Vibrio splendidus
LGP32]
gi|254811549|sp|B7VLU4|MOAA_VIBSL RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|218321998|emb|CAV18019.1| Molybdenum cofactor biosynthesis protein A [Vibrio splendidus
LGP32]
Length = 334
Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 18/169 (10%)
Query: 41 DRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
D + +C +C D G + + + + ++ + +TGGEP L+
Sbjct: 27 DVCNFKCTYCLPD----GYKPSGQKNSSFLSVPEIKRVVKAFADCGTSKIRITGGEPSLR 82
Query: 99 VDVPLIQALNKR--GF-EIAVETNGTIEPPQGIDW-------ICVSPKA-GCDLKIKGGQ 147
D P I G ++A TNG Q W I VS + + +
Sbjct: 83 KDFPEIIHTVASTPGIEKVATTTNGYRMEKQVGQWRDAGLTHINVSVDSLDSRMFHQITG 142
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
E K + +GF+ + ++ M +E +++ P
Sbjct: 143 ENKFTEVMRGIDKAFEVGFEQVKVNVVLMKDLNSQE-LPAFLNWIKDKP 190
>gi|189219894|ref|YP_001940535.1| Molybdenum cofactor biosynthesis enzyme [Methylacidiphilum
infernorum V4]
gi|189186752|gb|ACD83937.1| Molybdenum cofactor biosynthesis enzyme [Methylacidiphilum
infernorum V4]
Length = 337
Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
DR + +C +C +G K + + ++L ++ + R +TGGEPL++
Sbjct: 30 DRCNERCIYCFPQDLGFLSKKDSQLSFEELYAVV--FHGAMKHGFRDFRITGGEPLVRKG 87
Query: 100 -DVPLIQALNKRGF-EIAVETNG 120
+ + G + + TNG
Sbjct: 88 TLAFIRRLTRTPGISSVRLSTNG 110
>gi|225175614|ref|ZP_03729608.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225168943|gb|EEG77743.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 391
Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + T+ G+ +D LA+ + + +
Sbjct: 47 CNLKCIHCYMGSENI------KYENEMSTEEGKKFIDDLAE----------FKSPVILFS 90
Query: 92 GGEPLLQVDV-PLIQALNKRGFEIAVETNG 120
GGEPL++ D L + RG + + TNG
Sbjct: 91 GGEPLIRPDFFELAEYATSRGIRVTISTNG 120
>gi|153811590|ref|ZP_01964258.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174]
gi|149832331|gb|EDM87416.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174]
Length = 298
Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 16/47 (34%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGT 60
G G VF GCNL +C++C + +
Sbjct: 17 DGPGIRT---TVF--LQGCNL-----------RCKWCHNPETWKKKS 47
>gi|149173373|ref|ZP_01852003.1| astB/chuR-related protein-putative enzyme of the MoaA / nifB / pqqE
family [Planctomyces maris DSM 8797]
gi|148847555|gb|EDL61888.1| astB/chuR-related protein-putative enzyme of the MoaA / nifB / pqqE
family [Planctomyces maris DSM 8797]
Length = 438
Score = 35.3 bits (80), Expect = 5.2, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 19/91 (20%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C + D K + +V+ ++ LI+E E + +
Sbjct: 58 CNLRC--------QGC-WVDVA------AKQEKIDVEAMSRLIQE---AKEMGNSFFGIL 99
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTI 122
GGEP + + I + + + TNG
Sbjct: 100 GGEPFMHPQLLEILERHPDCY-FQIFTNGQF 129
>gi|210621800|ref|ZP_03292829.1| hypothetical protein CLOHIR_00774 [Clostridium hiranonis DSM 13275]
gi|210154564|gb|EEA85570.1| hypothetical protein CLOHIR_00774 [Clostridium hiranonis DSM 13275]
Length = 454
Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 31 GCNLWSGREQDRLSA---QCRFCDTDFVGIQGTKGGRY--NVDQLADLIEEQWITGEKEG 85
GCN+ D SA C C G + +++ + +I + E
Sbjct: 104 GCNVPWAILLDPTSACNMHCTGC------WAAEYGNKLNLSLETIDSIIRQ---GKEMGT 154
Query: 86 RYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120
+ TGGEPL++ D + TNG
Sbjct: 155 YMYIYTGGEPLVRKDDLMKICEMHPDCAFLAFTNG 189
>gi|295109262|emb|CBL23215.1| glycyl-radical enzyme activating protein family [Ruminococcus obeum
A2-162]
Length = 263
Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 71/236 (30%), Gaps = 54/236 (22%)
Query: 9 IF----LTL-QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC-----------DT 52
IF ++ G G VF GC +CR+C
Sbjct: 10 IFDIQRYSVHDGPGIRT---IVF--LKGC-----------VLRCRWCCNPESQEYKIQTM 53
Query: 53 DFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKR 110
+G G V+++ ++EE + G L+GGE L Q + L++A +
Sbjct: 54 KVLGEDKVIGRDVTVEEMIKVVEEDRPYYRRSGGGLTLSGGESLCQPEFARDLLRAAKEH 113
Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQV-NVSPENYIGF--- 166
G A+E+ + D+K + K + ++ EN
Sbjct: 114 GINTALESMACAPFETIETILPYLDLYLMDIKHTNPAKHKEFTGRPNDLMMENARKVALS 173
Query: 167 -DFERFSLQPMDGPFLE--ENTNLAISYCFQNPKWRLSVQTH----------KFIG 209
+ P+ F + E + P Q H K+IG
Sbjct: 174 GKCKLIIRVPVIPTFNDTIEEIQGIARFADTLPGVE---QLHLLPYHRLGQDKYIG 226
>gi|152977632|ref|YP_001377149.1| radical SAM domain-containing protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026384|gb|ABS24154.1| Radical SAM domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 292
Score = 35.3 bits (80), Expect = 5.3, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ + +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFLSVEDFSKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
GEPLL L+ +++GF++ + TNGT+ + +
Sbjct: 57 -GEPLLHPKIDKLLDLSHEKGFKVNITTNGTLIHKRKHKLLN 97
>gi|82794611|ref|XP_728508.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23484893|gb|EAA20073.1| unnamed protein product [Plasmodium yoelii yoelii]
Length = 351
Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats.
Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 22/180 (12%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
Q S C+FC T +GI+ + +D++ D + + GEP
Sbjct: 107 CISSQIGCSFGCKFCATGQIGIK----RQLELDEITDQLLYFQSKNVNIKNVSFMGMGEP 162
Query: 96 LLQVDV-PLIQALNKRGF------EIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
L +V I+ N F I + T G + + ++ + L +E
Sbjct: 163 LANPNVFEAIRFFNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEE 222
Query: 149 LKLVFPQVNVSP--------ENYIGFDFERFSLQPMDGPFLEENTNLAI---SYCFQNPK 197
+ P + P ++ I R + + + ++T+ A + + P
Sbjct: 223 RDQLVPINKLFPFHEVLDLLDDRIAKTNRRVWISYILIKDVNDSTDHAEALCDHIIKRPP 282
>gi|228905054|ref|ZP_04069093.1| hypothetical protein bthur0014_61690 [Bacillus thuringiensis IBL
4222]
gi|228940619|ref|ZP_04103185.1| hypothetical protein bthur0008_32640 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228969484|ref|ZP_04130296.1| hypothetical protein bthur0004_61600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228973538|ref|ZP_04134122.1| hypothetical protein bthur0003_32950 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980096|ref|ZP_04140412.1| hypothetical protein bthur0002_32670 [Bacillus thuringiensis Bt407]
gi|228779682|gb|EEM27933.1| hypothetical protein bthur0002_32670 [Bacillus thuringiensis Bt407]
gi|228786233|gb|EEM34228.1| hypothetical protein bthur0003_32950 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228790227|gb|EEM37997.1| hypothetical protein bthur0004_61600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228819125|gb|EEM65184.1| hypothetical protein bthur0008_32640 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228854599|gb|EEM99218.1| hypothetical protein bthur0014_61690 [Bacillus thuringiensis IBL
4222]
Length = 103
Score = 35.3 bits (80), Expect = 5.4, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 116 VETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQP 175
+E NG G+ + V+ KA L ++ +LK + + I F Q
Sbjct: 1 MELNGVFWNEDGVAEMTVTTKAEHSLLLRLVVDLKSKTIRATSAD---IVNGFCPLCKQK 57
Query: 176 -------MDGPFLEENTNLAISYCFQNPKWRLSV 202
D E A + ++P++R +
Sbjct: 58 KDKCSELNDLQNKMEILEEAYDWVREHPEYRFQL 91
>gi|257456252|ref|ZP_05621449.1| putative radical SAM domain protein [Treponema vincentii ATCC
35580]
gi|257446338|gb|EEV21384.1| putative radical SAM domain protein [Treponema vincentii ATCC
35580]
Length = 355
Score = 35.3 bits (80), Expect = 5.5, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 17/95 (17%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CN+ + L ++ FC T+ ++ + + IEE + L
Sbjct: 72 CNMKCQYCYESLYSKNNFCLTN-----------NHIRSIINAIEEYFKRQHYNYITFTLL 120
Query: 92 GGEPLLQVDVPLIQALNKRG------FEIAVETNG 120
GGEPLL ++ ++I TNG
Sbjct: 121 GGEPLLDYNIHWFNNFFMECNNRNLIYDIFCITNG 155
>gi|313891039|ref|ZP_07824658.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pseudoporcinus SPIN 20026]
gi|313120402|gb|EFR43522.1| glycyl-radical enzyme activating protein family protein
[Streptococcus pseudoporcinus SPIN 20026]
Length = 257
Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 56/171 (32%), Gaps = 31/171 (18%)
Query: 14 QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQ-------------GT 60
G G VF GC L +C +C + T
Sbjct: 17 DGPGIRT---TVF--LKGCPL-----------RCPWCANPESQKKQPEQMLKADGQTYET 60
Query: 61 KGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVET 118
G VD + + + + E+ G L+GGE Q + +++A ++G A+ET
Sbjct: 61 VGEVKTVDMVIEEVLKDVDFYEESGGGLTLSGGEIFAQYEFAKAILKAAKEKGLHTAIET 120
Query: 119 NGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ Q +D I DLK + + N I + FE
Sbjct: 121 TAYAKHEQFVDLIQYVDFIYTDLKHYNQLRHRKMTGVANELIIKNIHYAFE 171
>gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 338
Score = 35.3 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 22/186 (11%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
++ Q + C FC T +G+ ++ + E+ V G
Sbjct: 97 HVVCLSSQAGCALGCAFCATAKLGLD----RSLRSWEMVAQLLAVRADSERPITGVVFMG 152
Query: 93 -GEPLLQVDV---PLIQALNKRG-----FEIAVETNGTIEPP------QGIDWICVSPKA 137
GEP L D + G I++ T G + +C+S A
Sbjct: 153 QGEPFLNYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212
Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194
K + ++ FP + R +L+ + G + E A+
Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGQLLA 272
Query: 195 NPKWRL 200
RL
Sbjct: 273 GIPVRL 278
>gi|254518626|ref|ZP_05130682.1| molybdenum cofactor biosynthesis protein A [Clostridium sp.
7_2_43FAA]
gi|226912375|gb|EEH97576.1| molybdenum cofactor biosynthesis protein A [Clostridium sp.
7_2_43FAA]
Length = 323
Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 56/208 (26%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL +C +C + K + D++ ++ E G K+ R+ T
Sbjct: 20 CNL-----------RCIYCMEEKNNTFLKKEDKLTNDEIYKIVCESAKLGIKKVRF---T 65
Query: 92 GGEPLLQVD--VPLIQALNKRGF-EIAVETNGTIEPP----------QGIDWICVSPKAG 138
GGEPL++ D + + +G EI + TNG + +G++ S K
Sbjct: 66 GGEPLVRKDIVELMQRINTIQGIEEIYLTTNGILLEENVEILAKAGLKGVNISLDSLKKE 125
Query: 139 CDLKIKGGQELKLVFPQVNV----------------SPENYIGFDFERFSLQ-PMDGPFL 181
++ +L V ++ + DF +LQ P+D F+
Sbjct: 126 TFKRLTRLGDLNKVLAAIDKCISLGIKVKLNTVMIEDINDDEIIDFVNLTLQKPIDVRFI 185
Query: 182 E------------ENTNLAISYCFQNPK 197
E N + I N K
Sbjct: 186 ELMPIGVGSKYKGINNEVIIDIIKNNYK 213
>gi|326203755|ref|ZP_08193618.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
gi|325986195|gb|EGD47028.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
Length = 407
Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP 102
++ +C C+ + +++ + IE+ + G +TGGEP+L+ D+
Sbjct: 87 VTGRCH-CNCWHCYRNKSSRYDLSLESVKSFIEQTYELGVANIG---ITGGEPMLRNDIK 142
Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWICVS 134
I + G + + T G + ++ S
Sbjct: 143 DIISFIPEGMQAQLYTTGHKIDDEFCKFLSNS 174
>gi|302875317|ref|YP_003843950.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|307688170|ref|ZP_07630616.1| Radical SAM domain-containing protein [Clostridium cellulovorans
743B]
gi|302578174|gb|ADL52186.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
Length = 293
Score = 35.3 bits (80), Expect = 5.7, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 32 CNLWSGREQDRLSAQCRFCD-TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
CNL C FC T K + + +++E + +
Sbjct: 15 CNL-----------ACDFCPKTKR------KAQLMDYESFCKILDEIRPYTDYIYLHVK- 56
Query: 91 TGGEPLLQVDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWIC 132
GEPL ++ + ++GF + + TNGT+ I
Sbjct: 57 --GEPLSHPELERFLDVSYEKGFMVNITTNGTLIKNVEDKIIT 97
>gi|241765488|ref|ZP_04763453.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidovorax delafieldii 2AN]
gi|241364742|gb|EER59742.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Acidovorax delafieldii 2AN]
Length = 229
Score = 35.3 bits (80), Expect = 5.8, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 17/104 (16%)
Query: 21 GRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWIT 80
GR+A GC C +C + + T Q+ +E +
Sbjct: 26 GRLAAVVYCQGCPWR-----------CSYCHNPEL-LDATAPAAAPWAQVLAFLESRRGL 73
Query: 81 GEKEGRYCVLTGGEPL-LQVDVPLIQALNKRGFEIAVETNGTIE 123
+ V +GGEP + + GF+ A+ T G
Sbjct: 74 LDG----VVFSGGEPTLQAALPAALAEVRAMGFQTALHTGGMYP 113
>gi|251773043|gb|EES53599.1| Radical SAM domain protein [Leptospirillum ferrodiazotrophum]
Length = 360
Score = 35.3 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 40/196 (20%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ ++ + L + I + +
Sbjct: 81 TAGCNLSCQFCQNWDISR------------AKETHNLTDRALPEEIADAAV--RWGAESV 126
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
T +P++ + + + A +RG T G I + V A DLK
Sbjct: 127 AFTYNDPVIFAEYAIDVAIACRERGVRTVAVTAGYIREAPRRELFAVMDGANVDLKS-FS 185
Query: 147 QELKLVFPQVNVSP----------ENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ-- 194
+E +++P E + F+ L P E + + +
Sbjct: 186 EEFYFRLTGGHLAPVLETLATLRHETSVWFEITTL-LIPGHNDGAREISEMCEWIIRELG 244
Query: 195 ----------NPKWRL 200
+P +R+
Sbjct: 245 PDIPLHFTAFHPDYRM 260
>gi|323701310|ref|ZP_08112985.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfotomaculum nigrificans DSM 574]
gi|323533912|gb|EGB23776.1| anaerobic ribonucleoside-triphosphate reductase activating protein
[Desulfotomaculum nigrificans DSM 574]
Length = 187
Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 20/92 (21%)
Query: 13 LQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLAD 72
+ G G VF GC C C + + G +++
Sbjct: 36 VDGPGLRT---VVF--LQGCP-----------RHCPGCHNPDL-LDSNGGREVTIEEALT 78
Query: 73 LIEEQWITGEKEGRYCVLTGGEPLLQVDVPLI 104
I + +GG+PLLQ +
Sbjct: 79 EIRASI---SPITQGITFSGGDPLLQPEALHQ 107
>gi|222100109|ref|YP_002534677.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
gi|221572499|gb|ACM23311.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
Length = 331
Score = 35.3 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 18/95 (18%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCN G FC + + R +QL + +E +
Sbjct: 80 TFGCNFKCG-----------FCQNWEISQARPETKRVTPEQLVKIA-----LMNRESKGI 123
Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGT 121
T EPL+ + + + K G + TNG
Sbjct: 124 AFTYNEPLIWFEFVLDTSRVAVKEGMYCVLVTNGF 158
>gi|89513954|gb|ABD74824.1| Fe-S oxidoreductase [Sinorhizobium arboris LMG 14919]
Length = 311
Score = 35.3 bits (80), Expect = 6.1, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 20/163 (12%)
Query: 43 LSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV- 101
+ +C +C + + R+++ + +L++E + + TGGEP +
Sbjct: 112 CNFRCSYC---YQDNRQRSDRRWSLSKCLELLDE---AADWGVVFAGFTGGEPTIFNGWL 165
Query: 102 PLIQALNKRGFEIAVETNGT----------IEPPQGIDWICVSPKAGCDLKIKGGQELKL 151
L++ RG +NGT G++ + +S
Sbjct: 166 ELLERTLTRGMIPVFTSNGTVIGTDPDXALRLKDAGMEEVTISLDVCSPELHDQVTRTSG 225
Query: 152 VFPQVNVSPENYIGFDFERFS---LQPMDGPFLEENTNLAISY 191
FP+V + L PM ++E + +
Sbjct: 226 HFPKVVDAIRFLRAAGIRVLIKSVLTPMTQHAVQETXDFLVDL 268
>gi|222096987|ref|YP_002531044.1| hypothetical protein BCQ_3327 [Bacillus cereus Q1]
gi|221241045|gb|ACM13755.1| conserved hypothetical protein [Bacillus cereus Q1]
Length = 120
Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
+ +E NG GI + V+ K ++ +L+ + + I F
Sbjct: 12 NDVTVQMELNGVFWNEDGIAEMTVTTKEEHSFILRLVVDLEN---KTIRATSIEIVNGFC 68
Query: 170 RFSLQP-------MDGPFLEENTNLAISYCFQNPKWRLSV 202
Q D E A + ++P++R +
Sbjct: 69 PLCKQKRNECSELNDLQNKMEILEEAYDWVREHPEYRFQL 108
>gi|83590093|ref|YP_430102.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
gi|83573007|gb|ABC19559.1| Radical SAM [Moorella thermoacetica ATCC 39073]
Length = 335
Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 15/155 (9%)
Query: 49 FCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVP-LIQAL 107
+CD + + +LI+E + R + +GGEPLL+ D+P L+
Sbjct: 14 YCDHCYRDAGARVEDELTTAEAGNLIDE---AAKAGFRIMIFSGGEPLLRPDLPELVSRA 70
Query: 108 NKRGFEIAVETNGT--------IEPPQGIDWICVSPKAGCDLKIKGGQELKLVF--PQVN 157
RG + +NGT G + +S + + ++ + +
Sbjct: 71 AARGLRPVLGSNGTLLTTELARELKAAGALAVGISLDSCDPARHDRLRQKEGAWRKAVAG 130
Query: 158 VSPENYIGFDFERFSLQPMDGPF-LEENTNLAISY 191
++ G F+ + LE+ T+LA+
Sbjct: 131 MAACREAGLPFQVHTTVFDWNQDELEKLTDLAVEL 165
>gi|308274193|emb|CBX30792.1| hypothetical protein N47_E43040 [uncultured Desulfobacterium sp.]
Length = 455
Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 31 GCNLWSGRE--------------QDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
GC G R + C++C F + + ++ + +
Sbjct: 77 GCPFDCGLCALHRQITCTALLEITQRCNLSCKYC---FASSKKSAVPDPDIQTIEFWFKR 133
Query: 77 QWITGEKEGRYCVLTGGEP-LLQVDVPLIQALNKRGF-EIAVETNG 120
L+GGEP L + +I+ +GF I + TNG
Sbjct: 134 VREAA--PACNIQLSGGEPTLREDLFQIIEMGRNKGFGFIQLNTNG 177
>gi|4589922|dbj|BAA76928.1| molybdenum cofactor biosynthesis protein A [Clostridium
perfringens]
Length = 323
Score = 35.3 bits (80), Expect = 6.2, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 74
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 75 --IVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 132
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ ++NP
Sbjct: 133 IGTLDKVLYSIEKCLENNVKVKINTVIL---EDFNKDEILDL-INLAYKNP 179
>gi|45358134|ref|NP_987691.1| molybdenum cofactor biosynthesis protein A [Methanococcus
maripaludis S2]
gi|74555264|sp|Q6LZQ3|MOAA_METMP RecName: Full=Probable molybdenum cofactor biosynthesis protein A
gi|44920891|emb|CAF30127.1| MoaA/nifB/pqqE family [Methanococcus maripaludis S2]
Length = 297
Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C G G + D++ ++ E R ++
Sbjct: 20 CNLK-----------CFYCH--KEGRNEEHGKLMSADEIGKIVNSSL---EFGVRKIKIS 63
Query: 92 GGEPLLQVDVP--LIQALNKRGFEIAVETNG 120
GGEPLL+ D+P + N++ +I++ TNG
Sbjct: 64 GGEPLLRTDLPEIISYIKNEQIKDISLTTNG 94
>gi|254457135|ref|ZP_05070563.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
gi|207085927|gb|EDZ63211.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
Length = 341
Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 50/188 (26%), Gaps = 34/188 (18%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFV--GIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
GCNL Q+ + + G +Q+ L E
Sbjct: 82 GCNLSCKFCQNHEI-------SQYSKENNHKIAGHELPPEQIVALAIENK------CDSI 128
Query: 89 VLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGT---------IEPPQGIDWICVSPKA 137
T EP + + +++G + T+G G++ S
Sbjct: 129 AYTYNEPIVFFEYTYDTAKLAHEKGIKNIYVTSGYETKKAIDLLQPYIDGMNIDIKSFSD 188
Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGP-FLEENTNLAISYCFQ-- 194
K G LK V V + E I + + G +E +
Sbjct: 189 EF-YKEICGARLKPVLEAVKYAHEKGIWVEITTLL---ISGKNDSDEEIRSIARFIADLD 244
Query: 195 -NPKWRLS 201
+ W LS
Sbjct: 245 TSIPWHLS 252
>gi|110801520|ref|YP_699075.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
SM101]
gi|123341686|sp|Q0SS32|MOAA_CLOPS RecName: Full=Molybdenum cofactor biosynthesis protein A
gi|110682021|gb|ABG85391.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
SM101]
Length = 323
Score = 35.3 bits (80), Expect = 6.3, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 18 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVR-- 72
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 73 EGIVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 132
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ ++NP
Sbjct: 133 IGTLDKVLYSIEKCLENNVKVKINTVIL---EDFNKDEILDL-INLAYKNP 179
>gi|304317054|ref|YP_003852199.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778556|gb|ADL69115.1| Radical SAM domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 326
Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 31 GCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVL 90
GCNL +C FC + Q +G + +L ++ ++Q +
Sbjct: 81 GCNL-----------RCLFCQNWEISQQRLEGEYLSPSKLVEIAKKQ-----QGNVGIAY 124
Query: 91 TGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQE 148
T EP + + + + +K + + TNG I + + D+K +
Sbjct: 125 TYNEPSIWYEYVLDSAKISHKESLKNVLVTNGYINIDPLKELLQYIDAVNIDVKAFSNEY 184
Query: 149 LKLVFP 154
K +
Sbjct: 185 YKKICH 190
>gi|168215418|ref|ZP_02641043.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
NCTC 8239]
gi|182382388|gb|EDT79867.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
NCTC 8239]
Length = 331
Score = 35.3 bits (80), Expect = 6.4, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVS---PKAGCDLKIKG 145
++ + +E TNG G+ + +S K +I
Sbjct: 83 --IVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDRFKEITR 140
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNP 196
L V + EN + L + +E +L I+ ++NP
Sbjct: 141 IGTLDKVLYSIEKCLENNVKVKINTVIL---EDFNKDEILDL-INLAYKNP 187
>gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT]
gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT]
Length = 299
Score = 34.9 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 2/117 (1%)
Query: 52 TDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD--VPLIQALNK 109
T + G V+++ +++ + + G L+GGEPL Q D + L++A
Sbjct: 91 TCYANALNMAGTSKKVEEIIEVLRKDNSYYRRSGGGITLSGGEPLYQGDFAIELLKACKD 150
Query: 110 RGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGF 166
+G AVET + + D+K + K Q N I F
Sbjct: 151 KGCHTAVETTAFVNREVLKRALKYLDLVMVDVKSMDCIKHKKYTGQDNEIILGNIKF 207
>gi|320353735|ref|YP_004195074.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
DSM 2032]
gi|320122237|gb|ADW17783.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
Length = 469
Score = 34.9 bits (79), Expect = 6.5, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 30 SGCNLWSGREQD--------------RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIE 75
+GC G D R + +C C F + + +
Sbjct: 79 AGCPHDCGLCPDHGQHTCTALIEITARCNLRCPVC---FAAAGASGADDDPSLERIEFFY 135
Query: 76 EQWITGEKEGRYCVLTGGEPLLQVDVPLIQAL-NKRGF-EIAVETNG 120
++ + L+GGEP ++ D+ I AL +GF I + TNG
Sbjct: 136 DRILEASGPCN-IQLSGGEPTMRDDLDAIIALGRDKGFGFIQLNTNG 181
>gi|307634938|gb|ADN78354.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase,
putative [Geobacter sulfurreducens KN400]
Length = 322
Score = 34.9 bits (79), Expect = 6.5, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 36 SGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEP 95
R +A+C C+T F + +Q ++ E ++ +TGGEP
Sbjct: 4 CIIVTYRCNAKCHMCNTWF----------HPTEQDKEISPEVIAKLPSGLKFINITGGEP 53
Query: 96 LLQVDVP-LIQALNKRGFEIAVETNGTI 122
L+ D+ +I+ + + + TNG
Sbjct: 54 FLRKDLAQIIEVALNKTERLVISTNGYY 81
>gi|229000246|ref|ZP_04159815.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
gi|229007769|ref|ZP_04165358.1| Radical SAM domain protein [Bacillus mycoides Rock1-4]
gi|228753487|gb|EEM02936.1| Radical SAM domain protein [Bacillus mycoides Rock1-4]
gi|228759578|gb|EEM08555.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
Length = 292
Score = 34.9 bits (79), Expect = 6.8, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + +V+ + +++ + +
Sbjct: 15 CNL-----------ACSFC-----PPTERQKQFLSVEDFSKRLDQIKPHTDYIYLHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL + L+ +++GF++ + TNG
Sbjct: 57 -GEPLLHPKIDQLLDLSHEKGFKVNITTNG 85
>gi|303238469|ref|ZP_07325003.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302593867|gb|EFL63581.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 296
Score = 34.9 bits (79), Expect = 6.9, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C FC + VD ++++ + +
Sbjct: 15 CNL-----------ACSFC--PQTRRKAEF---MKVDTFGKILDKIKPHTDYIYFHVK-- 56
Query: 92 GGEPLLQVDVP-LIQALNKRGFEIAVETNG 120
GEPLL ++ + ++GF++ + TNG
Sbjct: 57 -GEPLLHPEIDKFLDLSCEKGFKVNITTNG 85
>gi|126642576|ref|YP_001085560.1| putative organic radical activating enzyme [Acinetobacter baumannii
ATCC 17978]
gi|126388460|gb|ABO12958.1| putative organic radical activating enzyme [Acinetobacter baumannii
ATCC 17978]
Length = 77
Score = 34.9 bits (79), Expect = 6.9, Method: Composition-based stats.
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 184 NTNLAISYCFQNPKWRLSVQTHKFI 208
+LA R +Q HK +
Sbjct: 46 ARDLAQWILDDKLPVRFQLQLHKLL 70
>gi|268611335|ref|ZP_06145062.1| Radical SAM domain protein [Ruminococcus flavefaciens FD-1]
Length = 365
Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGR--YNVDQLADLIEEQWITGEKEGRYCVLT 91
+ + +C +C K Y+ + + + ++ + G + +
Sbjct: 8 FECLIPETVCNLRCGYCYVIQRSQNTMKVPELDYSPEIIGKALTQERLGGV--CYFSICG 65
Query: 92 GGEPLLQV-DVPLIQALNKRGFEIAVETNG 120
GE + + ++ L K G + + TNG
Sbjct: 66 AGETFVPDYLIEIVHELLKNGHYVNITTNG 95
>gi|327311840|ref|YP_004338737.1| Radical SAM domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326948319|gb|AEA13425.1| Radical SAM domain protein [Thermoproteus uzoniensis 768-20]
Length = 372
Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 24 AVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEK 83
+F F+GCN +C FC + + G LA + Q +
Sbjct: 153 TIF--FAGCNF-----------RCAFCQNWDISQRPENGAEATPRHLALI---QIRLRAE 196
Query: 84 EGRYCVLTGGEPL 96
R GGEP
Sbjct: 197 GARNINWVGGEPT 209
>gi|298384683|ref|ZP_06994243.1| radical SAM domain-containing protein [Bacteroides sp. 1_1_14]
gi|298262962|gb|EFI05826.1| radical SAM domain-containing protein [Bacteroides sp. 1_1_14]
Length = 370
Score = 34.9 bits (79), Expect = 7.1, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 9/169 (5%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGG--RYNVDQLADLIEEQWITGEKEGRYCVLT 91
+ +C +C G + K RY+ Q+A+ + + + G +
Sbjct: 8 FECLIPITVCNMKCHYCYVVQRGYRTMKMAEMRYSPKQIAEGLSHKRLNGA--AYISICG 65
Query: 92 GGEPLLQVDVPLIQA-LNKRGFEIAVETNGTIEPPQGIDWICVSP----KAGCDLKIKGG 146
GE + ++P I L K G I + TNGT + +
Sbjct: 66 IGETTMVKELPEICLELLKEGHYINITTNGTFIRFFDQFLELIPSEMLARVNFSFSFHYL 125
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ ++ + + N + +Q E + C +N
Sbjct: 126 ELERMKAFEKFFANINRVKDAGCSILVQFNLCDEYEPHLEDIKRMCLEN 174
>gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
sp. K]
gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
Length = 338
Score = 34.9 bits (79), Expect = 7.3, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 22/186 (11%)
Query: 33 NLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTG 92
++ Q + C FC T +G+ ++ + E+ V G
Sbjct: 97 HVVCLSSQAGCALGCAFCATAKLGLD----RSLRSWEMVSQLLAVRADSERPITGVVFMG 152
Query: 93 -GEPLLQVDV---PLIQALNKRG-----FEIAVETNGTIEPP------QGIDWICVSPKA 137
GEP L D + G I++ T G + +C+S A
Sbjct: 153 QGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNA 212
Query: 138 GCDLKIKGGQELKLVFPQVNVSPENYIGFDFE-RFSLQP--MDGPFLEENTNLAISYCFQ 194
K + ++ FP + R +L+ + G + E A+
Sbjct: 213 AMPWKRRALMPVEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGQLLA 272
Query: 195 NPKWRL 200
RL
Sbjct: 273 GIPVRL 278
>gi|197119849|ref|YP_002140276.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
[Geobacter bemidjiensis Bem]
gi|197089209|gb|ACH40480.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
[Geobacter bemidjiensis Bem]
Length = 316
Score = 34.9 bits (79), Expect = 7.3, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 49/168 (29%), Gaps = 18/168 (10%)
Query: 31 GC-NLWSGREQD---RLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGR 86
GC N++ G D + + +C++C G ++ E G
Sbjct: 55 GCKNVYDGYMIDVTSQCNLKCKYC------YHANGGEHRAAAEVIADAIEHRHLGP---- 104
Query: 87 YCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGG 146
+LTGGEP L D+P + E V TNG +G S + G
Sbjct: 105 -TILTGGEPTLHPDLPAMVRELAPWNETWVLTNGVKMADEGYFEELCSAGLLHGDIVLAG 163
Query: 147 QELKLVFPQVNVSPENYIGFDFERF---SLQPMDGPFLEENTNLAISY 191
++ R L E LA Y
Sbjct: 164 LSFHKESAGKDLEVLELCRRKGYRIGTTFFVIDSVDELAEAVALAREY 211
>gi|261855208|ref|YP_003262491.1| molybdenum cofactor biosynthesis protein A [Halothiobacillus
neapolitanus c2]
gi|261835677|gb|ACX95444.1| molybdenum cofactor biosynthesis protein A [Halothiobacillus
neapolitanus c2]
Length = 328
Score = 34.9 bits (79), Expect = 7.5, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 22/169 (13%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA---DLIEEQ-WITGEKEGRYCVLTGGEPL 96
DR +C +C + V + D IE + E R +TGGEPL
Sbjct: 21 DRCDLRCFYC-------MPEGFNDFEVPEHWLTADEIERLLGVMAEMGLRRVRITGGEPL 73
Query: 97 LQVDVPLIQALNKR--GFE-IAVETN----GTIEPP---QGIDWICVSPKAGCDLKIKGG 146
++ + I G IA+ TN G + P G+D I VS + K
Sbjct: 74 VRRGIEDIVRRIDALPGIRDIALSTNATRLGKMAAPLKAAGVDRINVSLDTLDADRFKQI 133
Query: 147 QELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQN 195
+ KL + G + ++ M G E++ + +C ++
Sbjct: 134 TQGKLSKVIDGLMAAKDAGLSPIKLNMVVMKGV-NEDDVESVLEFCIEH 181
>gi|260911858|ref|ZP_05918424.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633974|gb|EEX52098.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 212
Score = 34.9 bits (79), Expect = 7.5, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 34/174 (19%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
F GC L + C DT R + L D +++ + G
Sbjct: 32 FFGCPLNCKYCLNNQ---CH--DTRRRW------KRISPQALYDELKQDELYFLATGGGV 80
Query: 89 VLTGGEPLLQ-VDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQ 147
GGEP LQ + + + + I VET+ + + V
Sbjct: 81 TFGGGEPCLQSKFIKAFRNICGPTWNITVETSLYVPQNHLRRLLDVVDT----------- 129
Query: 148 ELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYC-FQNPKWRL 200
+ +++PE Y+ + + SL L++N + +N R+
Sbjct: 130 ---YIIDIKDLNPETYLKYTLKDISL-------LKDNLQWLTEHVDKENIFVRV 173
>gi|327399967|ref|YP_004340806.1| Radical SAM domain-containing protein [Archaeoglobus veneficus
SNP6]
gi|327315475|gb|AEA46091.1| Radical SAM domain protein [Archaeoglobus veneficus SNP6]
Length = 421
Score = 34.9 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D +A C +C I R ++ E + + + + G EPLL D
Sbjct: 66 DSCNASCPYC-----YIPPEVKRRGQTMDYEEMGEILDVLKKAGVEWIIFHGAEPLLAKD 120
Query: 101 VPLIQALNKRGFEIAVETNGTIEPPQGIDWI 131
V R F ++TNG + + +++I
Sbjct: 121 VIFRVIEENRQFNYGIQTNGFLLNDEDMEFI 151
>gi|157694065|ref|YP_001488527.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus
SAFR-032]
gi|157682823|gb|ABV63967.1| molybdenum cofactor biosynthesis protein A [Bacillus pumilus
SAFR-032]
Length = 335
Score = 34.9 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 20/147 (13%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLA--DLIEEQWI--TGEKEGRYCVLTGGEPL 96
DR + +C +C I G N ++L + IE+ + +TGGEPL
Sbjct: 21 DRCNFRCTYC--MPAEIFGPDYPFLNKEELLSFEEIEQLATLFAKDLGVVKIRITGGEPL 78
Query: 97 LQVDVPLIQALNKR--GFE-IAVETNG-------TIEPPQGIDWICVSPKAGCDLKIKGG 146
L+ D+P++ G E IA+ TNG G+ + +S + + K
Sbjct: 79 LRKDLPILIEKLSNIPGIEDIAMTTNGTLLPVYADKLKKAGLQRVTISLDSLNPDRFKQM 138
Query: 147 Q----ELKLVFPQVNVSPENYIGFDFE 169
++ VF + + + +
Sbjct: 139 NGRNISIQKVFDGIEAAKKAGLAIKIN 165
>gi|297544781|ref|YP_003677083.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 342
Score = 34.9 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 39/154 (25%), Gaps = 15/154 (9%)
Query: 28 RFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRY 87
RF N Q + +C FC G K ++ D + K
Sbjct: 98 RFG--NTACVSTQVGCNMRCSFC----ASAIGGKVRDLKASEMVDQVMSIDSDYGKISNI 151
Query: 88 CVLTGGEPLLQVDVPLIQALNKRG--------FEIAVETNGTIEPPQGIDWICVSPKAGC 139
++ GEP + + I + T G I +
Sbjct: 152 VLMGSGEPFDNYEEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSI 211
Query: 140 DLKIKGGQELKLVFPQVNVSPENYIGFDFERFSL 173
L EL+ +N + ++ +
Sbjct: 212 SLHAPN-DELRTQLMPINKAYPLEELMKACKYYI 244
>gi|303240613|ref|ZP_07327128.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
gi|302591850|gb|EFL61583.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
Length = 297
Score = 34.9 bits (79), Expect = 7.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 66 NVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDV--PLIQALNKRGFEIAVETNG 120
+++ I+ + I L+GGEP+LQ L++ G A+ET+G
Sbjct: 104 TPEEIFKEIKAELILLR-NIGGITLSGGEPMLQYLEAKELLKLCKGMGAHTAIETSG 159
>gi|15899070|ref|NP_343675.1| cofactor biosynthesis protein [Sulfolobus solfataricus P2]
gi|284175261|ref|ZP_06389230.1| cofactor biosynthesis protein [Sulfolobus solfataricus 98/2]
gi|13815607|gb|AAK42465.1| Cofactor biosynthesis protein [Sulfolobus solfataricus P2]
gi|261600819|gb|ACX90422.1| Radical SAM domain protein [Sulfolobus solfataricus 98/2]
Length = 344
Score = 34.9 bits (79), Expect = 8.0, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 28/178 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C F + + L + + + +
Sbjct: 36 CNLRCRM--------CPF----------WRRKDEKLLSLEEEVLMLKSLEKAGVLFMGFE 77
Query: 92 GGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPK--AGCDLKIKGGQEL 149
GGEPLL+ D+ I + + F ++ TNG + + D + ++
Sbjct: 78 GGEPLLRRDLEDILEESYKRFYTSLVTNGWLLKDRAKSISNYLDYLFVSIDGIGEVHDKI 137
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPF--LEENTNLAISYCF--QNPKWRLSVQ 203
+ + + E G R L P+ F +EN + + +S+Q
Sbjct: 138 RGISGAFERAVE---GIKEARKYL-PVAISFTITKENMDQVKDVIELARKLNVNISIQ 191
>gi|150020503|ref|YP_001305857.1| hypothetical protein Tmel_0605 [Thermosipho melanesiensis BI429]
gi|149793024|gb|ABR30472.1| hypothetical protein Tmel_0605 [Thermosipho melanesiensis BI429]
Length = 176
Score = 34.9 bits (79), Expect = 8.3, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 27 CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQW--ITGEKE 84
F GC+ +C FC + +G YNV++L I+E+ I E
Sbjct: 23 IYFQGCD---------RIPKCPFCHNKETW-EPFRGFEYNVEKLIIRIKEKINDIIDLHE 72
Query: 85 GRYCVLTGGEPLLQVDV 101
V GGEPL +
Sbjct: 73 KIAIVYLGGEPLAPYNR 89
>gi|168214364|ref|ZP_02639989.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
CPE str. F4969]
gi|170714163|gb|EDT26345.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
CPE str. F4969]
Length = 331
Score = 34.5 bits (78), Expect = 8.4, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 26 DKCNLRCAYCMEKDHNDFIQNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVR-- 80
Query: 101 VPLIQALNKRGFEIAVE-----TNG 120
++ + +E TNG
Sbjct: 81 EGVVDLIKNINKIPEIEEICLTTNG 105
>gi|154492926|ref|ZP_02032552.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
43184]
gi|154087231|gb|EDN86276.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
43184]
Length = 301
Score = 34.5 bits (78), Expect = 8.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVET 118
G Y+ + L IE++ + ++ GGEPLL + L++ +RG AV+T
Sbjct: 100 GTEYSAEALMKEIEKEIVFMDRSEGGVTFCGGEPLLHPGPLLDLLRRCGERGIHRAVDT 158
>gi|325121233|gb|ADY80756.1| putative D-amino acid oxidase [Acinetobacter calcoaceticus PHEA-2]
Length = 371
Score = 34.5 bits (78), Expect = 8.8, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 40/169 (23%), Gaps = 24/169 (14%)
Query: 30 SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCV 89
GCN+ S +Q + GG + + +
Sbjct: 22 QGCNV-SIFDQQEAGQAASW----------AGGGILSPMYPWRYVHAVNQLAQFGKASYQ 70
Query: 90 LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
+ G + + G + + + +S ++ + L
Sbjct: 71 AWN-----------QKLYPVTGIDFEIHDTGMLIFDEEDFDVGLSYAEQHQEPMQRCEYL 119
Query: 150 KLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPKW 198
+ + V+P F E + I Y Q+P
Sbjct: 120 QRDALE-QVNPHISDQFQ-EAIYFPELSNIRNPRVLQSLIRYLKQHPNV 166
>gi|262383329|ref|ZP_06076465.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294227|gb|EEY82159.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 308
Score = 34.5 bits (78), Expect = 8.8, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 25/59 (42%)
Query: 1 MKLYSIKEIFLTL---------QGEGGHAGRVAVFCRFSGCNLWSGREQDRLSAQCRFC 50
M Y + E L++ G G VF GC L C +C
Sbjct: 1 MNKYKVSENRLSIMEIERFAVHDGPGIRT---VVF--LQGCPL-----------HCSWC 43
>gi|292493573|ref|YP_003529012.1| radical SAM protein [Nitrosococcus halophilus Nc4]
gi|291582168|gb|ADE16625.1| Radical SAM domain protein [Nitrosococcus halophilus Nc4]
Length = 376
Score = 34.5 bits (78), Expect = 9.1, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 25/179 (13%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ + + + + I GE R
Sbjct: 99 TAGCNLACKFCQNWDIS------------KSREFDTLADQASPEAIARA--AGELGCRSV 144
Query: 89 VLTGGEP--LLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---I 143
T +P ++ + + QA +RG + T G I +++ A DLK
Sbjct: 145 AYTYNDPVIFMEYAIDVAQACRERGIKSIAVTAGYICDEPRMEFYRYMDAANVDLKAFTE 204
Query: 144 KGGQELKLVFPQVNVSPENYIGFDFERFS-----LQPMDGPFLEENTNLAISYCFQNPK 197
K +++ Q + Y+ ++ + L P + +E + ++
Sbjct: 205 KFYRKITGGHLQPVLDTLVYLKYETPLWFELTTLLIPGENDSNQE-LEAMSQWVVEHLG 262
>gi|325982177|ref|YP_004294579.1| Radical SAM domain-containing protein [Nitrosomonas sp. AL212]
gi|325531696|gb|ADZ26417.1| Radical SAM domain protein [Nitrosomonas sp. AL212]
Length = 365
Score = 34.5 bits (78), Expect = 9.1, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 24/176 (13%)
Query: 29 FSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYC 88
+GCNL Q+ + + + + I + +
Sbjct: 88 TAGCNLACKFCQNWDIS------------KSRSFDKLQNQASPEAIASY--ARQYGCKSV 133
Query: 89 VLTGGEPLLQVDVPL--IQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLK---- 142
T +P++ + + A + G + T G I D+ DLK
Sbjct: 134 AFTYNDPVIFAEYAMDVADACHAEGLKTVAVTAGYIHAQPRRDFFAKMNATNVDLKAFTE 193
Query: 143 ----IKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQ 194
+ G L+ V + + L P +E + ++ +
Sbjct: 194 EFYVKQTGSHLQPVLDTLRYLRHETDVWLELTTLLIPGLNDSDQEISAMSEWIIKE 249
>gi|257875644|ref|ZP_05655297.1| pyruvate formate-lyase [Enterococcus casseliflavus EC20]
gi|257809810|gb|EEV38630.1| pyruvate formate-lyase [Enterococcus casseliflavus EC20]
Length = 316
Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 19/158 (12%)
Query: 60 TKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ--VDVPLIQALNKRGFEIAVE 117
T G +V + ++I + + G ++GGE LLQ L + K G + E
Sbjct: 107 TWGEEMSVSECMEIIRKDKEYYNQSGGGVTVSGGEALLQSAFVAELFEECKKEGIQTCFE 166
Query: 118 TNGTIEP-------PQGIDWIC-VSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFE 169
T P WI + + + G +++ + E D E
Sbjct: 167 TTFYSNWKKVELLLPSTDIWISDIKHMDSKKHRERTGVGNEIILENLKRLTE----LDRE 222
Query: 170 RFSLQPMDGPFLE--ENTNLAISYCFQNP--KWR-LSV 202
P+ F E N Y K R L +
Sbjct: 223 LVLRIPVIPEFNEDMANIEATADYILNKLKNKVRTLQL 260
>gi|187779327|ref|ZP_02995800.1| hypothetical protein CLOSPO_02923 [Clostridium sporogenes ATCC
15579]
gi|187772952|gb|EDU36754.1| hypothetical protein CLOSPO_02923 [Clostridium sporogenes ATCC
15579]
Length = 740
Score = 34.5 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 26 FCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEG 85
F GCNL +C++C + + ++ D I + G
Sbjct: 44 FIVTEGCNL-----------RCKYCYQVHKNGE-NRMDFATAKKIVDYILDNREIFSAPG 91
Query: 86 RYCVLTGGEPLLQ 98
GGEPLL+
Sbjct: 92 VVWDFIGGEPLLE 104
>gi|257063876|ref|YP_003143548.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
20476]
gi|256791529|gb|ACV22199.1| predicted Fe-S oxidoreductase [Slackia heliotrinireducens DSM
20476]
Length = 769
Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + T + G ++D+ ++++ +LT
Sbjct: 82 CNLACAHCRAAAHC------TPY-------PGELSLDECKAVMDDI---ASITDPILILT 125
Query: 92 GGEPLLQVD-VPLIQALNKRGFEIAVETNG 120
GGEPL++ D +I +++G + TNG
Sbjct: 126 GGEPLMRKDIWEIIDYAHEKGLHPVIGTNG 155
>gi|15679080|ref|NP_276197.1| pyruvate formate lyase activating protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622167|gb|AAB85558.1| pyruvate formate lyase activating protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 332
Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 14/75 (18%)
Query: 22 RVAVFCRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITG 81
+ FSGC L +C FC + + G VD+LA LIEE+ G
Sbjct: 118 VPSHTIFFSGCTL-----------RCVFCQNWDISQNPSAGRHIEVDELAALIEERRRMG 166
Query: 82 EKEGRYCVLTGGEPL 96
+ GG+P
Sbjct: 167 AANVNFV---GGDPT 178
>gi|298387292|ref|ZP_06996845.1| heme biosynthesis protein [Bacteroides sp. 1_1_14]
gi|298259961|gb|EFI02832.1| heme biosynthesis protein [Bacteroides sp. 1_1_14]
Length = 366
Score = 34.5 bits (78), Expect = 9.3, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%)
Query: 39 EQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQ 98
R + +CR C +D T + +++ + +++GGEP ++
Sbjct: 38 CTLRCNVRCRHCGSDCKSSPATPD--MPLQDFLKVLDSIATHTNPHDVFVIISGGEPTVR 95
Query: 99 VDVP-LIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
D+ + +++RG+ + NG + + + ++G LK V +
Sbjct: 96 EDLETCGKEISRRGYPWGMVCNGLCLTRERLHNL---IRSGMRSISISLDGLKDVHNWMR 152
Query: 158 VSPENYIGF 166
PE++
Sbjct: 153 RHPESFDCA 161
>gi|305663251|ref|YP_003859539.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
gi|304377820|gb|ADM27659.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
Length = 349
Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 52/159 (32%), Gaps = 23/159 (14%)
Query: 34 LWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGG 93
LW E R C+ C + D+ LI + GE +Y V GG
Sbjct: 10 LWYATE--RCDVGCKHC-----CYPPINRRELDTDEAKFLISKL---GEWGVKYFVFIGG 59
Query: 94 EPLLQVD-VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLV 152
EP L+ D + L++ K + + T G G D K ELK
Sbjct: 60 EPFLRDDILELVKWCTKLKIKPYIVTKGGR------------LAKGDDNAEKLAMELKRA 107
Query: 153 FPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAISY 191
+V V+ + + P + NL + Y
Sbjct: 108 DAKVTVAIDGITHATIDAICGLPEVYDRIMNTINLCLKY 146
>gi|289523797|ref|ZP_06440651.1| putative pyruvate formate-lyase 1 activating enzyme [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502941|gb|EFD24105.1| putative pyruvate formate-lyase 1 activating enzyme [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 357
Score = 34.5 bits (78), Expect = 9.4, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 78 WITGEKEGRYCVLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSP 135
+ G +GG+PL+Q + + L++ KRGF +ET G P +
Sbjct: 162 RPFYNQSGGGVTFSGGDPLVQHEFTLELLKESKKRGFHTCLETEGHAAWPILEKMLPYVD 221
Query: 136 KAGCDLKIKGGQELKLV 152
D+K ++ +
Sbjct: 222 IMLYDIKHMDSEKHREY 238
>gi|182625681|ref|ZP_02953450.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
D str. JGS1721]
gi|177909083|gb|EDT71558.1| molybdenum cofactor biosynthesis protein A [Clostridium perfringens
D str. JGS1721]
Length = 331
Score = 34.5 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 20/148 (13%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVD 100
D+ + +C +C +D++ +++E G K+ R LTGGEPL++
Sbjct: 26 DKCNLRCAYCMEKDHNDFIHNDKLMTLDEILRVVKECASIGIKKVR---LTGGEPLVREG 82
Query: 101 VPLIQALNKRGFEIAVE-----TNG-------TIEPPQGIDWICVSPKAGCDLKIK---G 145
++ + +E TNG G+ + +S + K K
Sbjct: 83 --VVDLIKNINKIPEIEEICLTTNGILLGDKVKELSENGLKRVNISLDTLKEDKFKEITR 140
Query: 146 GQELKLVFPQVNVSPENYIGFDFERFSL 173
L V + EN + L
Sbjct: 141 IGTLDKVLYSIEKCLENNVKVKINTVIL 168
>gi|167748945|ref|ZP_02421072.1| hypothetical protein ANACAC_03726 [Anaerostipes caccae DSM 14662]
gi|167651567|gb|EDR95696.1| hypothetical protein ANACAC_03726 [Anaerostipes caccae DSM 14662]
Length = 307
Score = 34.5 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 56/195 (28%), Gaps = 53/195 (27%)
Query: 6 IKEI--FLTLQGEGGHAGRVAVFCRFSGCNLWSGREQDRLSA--------------QCRF 49
I EI F G G R VF F GC L + S C
Sbjct: 8 IMEIERFAIHDGPGI---RSVVF--FQGCPLHCPWCANPESQQIKTHLFHSESKCTGCGH 62
Query: 50 C-----------DTDFVGIQ-------------------GTKGGRYNVDQLADLIEEQWI 79
C D + G ++++ IE+
Sbjct: 63 CLEHCPKQALYADDHHIKYHENCCIHCNKCVFGCLQSALSWVGKSCTIEEILKEIEKDDA 122
Query: 80 TGEKEGRYCVLTGGEPLLQV--DVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKA 137
++ L+GGE Q L++ L KR + I +ET G E + +
Sbjct: 123 YYQESQGGVTLSGGEVFTQFAALKSLLKELKKRNYHICIETCGEFETRLLEEVLGNVDLF 182
Query: 138 GCDLKIKGGQELKLV 152
D+K +L V
Sbjct: 183 LFDMKHSRADKLYQV 197
>gi|300870899|ref|YP_003785770.1| hypothetical protein BP951000_1280 [Brachyspira pilosicoli 95/1000]
gi|300688598|gb|ADK31269.1| conserved hypothetical protein [Brachyspira pilosicoli 95/1000]
Length = 308
Score = 34.5 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 18/136 (13%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL + Q + +++ I+ K +
Sbjct: 63 CNLHCFSCSN--------------FSQIAEEEYLDINSFEKDIKRLSEITNKMINRFSIM 108
Query: 92 GGEPLLQVDVPLIQALNKRGFE---IAVETNGT-IEPPQGIDWICVSPKAGCDLKIKGGQ 147
GGEPLL + + + F I + TNG + W +S + +
Sbjct: 109 GGEPLLNKNCKDYCKILRSYFPNTSITIITNGILLLQQDEDFWKTLSENSIDIFLTRYNI 168
Query: 148 ELKLVFPQVNVSPENY 163
L+ + + N
Sbjct: 169 NLRWDEIEKKANEYNI 184
>gi|167760148|ref|ZP_02432275.1| hypothetical protein CLOSCI_02520 [Clostridium scindens ATCC 35704]
gi|167662273|gb|EDS06403.1| hypothetical protein CLOSCI_02520 [Clostridium scindens ATCC 35704]
Length = 288
Score = 34.5 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRY---NVDQLADLIEEQWIT--GEKEGR 86
C + RE A C C+ Q G Y + + ++I E +G
Sbjct: 57 CPHHAIREHKVDRAICDSCEGKECIRQHDTKGMYLSYKEETVEEVIGEACANEMMFYDGG 116
Query: 87 YCVLTGGEPL--LQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
TGGE Q ++ L ++ A+ETNGT
Sbjct: 117 GVTFTGGEATVQFQELTDALKGLKEKDIHTAIETNGTHPRLPE 159
>gi|53711492|ref|YP_097484.1| arylsulfatase regulator [Bacteroides fragilis YCH46]
gi|52214357|dbj|BAD46950.1| arylsulfatase regulator (Fe-S oxidoreductase) [Bacteroides fragilis
YCH46]
Length = 463
Score = 34.5 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 22/148 (14%)
Query: 32 CNLWSGREQDRLSAQCRFC--DTDFVGIQGTKGGRYNVDQLAD--LIEEQWITGEKEGRY 87
CNL +C +C D G + + + + I + +
Sbjct: 101 CNL-----------RCIYCYEDPILNGSHCLPKAKISKEYIDKAFEIIAEKKKEGLCSKT 149
Query: 88 CVLTGGEPLLQVDVPL----IQALNKRGFEIAVETNGTIEPPQGIDWIC---VSPKAGCD 140
L GGEP L + + + + GF +V +NG S + D
Sbjct: 150 IALYGGEPFLANNYDMICYITKKGKELGFSFSVISNGYDIDKYLDFLKDNKIFSFQITLD 209
Query: 141 LKIKGGQELKLVFPQVNVSPENYIGFDF 168
K + + + D
Sbjct: 210 GISDIQNTRKPHWKNKDSFEKITSNIDH 237
>gi|284050768|ref|ZP_06380978.1| arylsulfatase regulator, AslB [Arthrospira platensis str. Paraca]
gi|291572047|dbj|BAI94319.1| putative arylsulfatase regulatory protein [Arthrospira platensis
NIES-39]
Length = 410
Score = 34.5 bits (78), Expect = 9.7, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 32 CNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLT 91
CNL C +C V G + +++D A IE K +
Sbjct: 37 CNL-----------HCSYCY-AEVKTPGKEVPLFDIDTFAIAIERIAEYSRKSHIELIFH 84
Query: 92 GGEPLLQVDVPLIQAL 107
GGEPLLQ D +A
Sbjct: 85 GGEPLLQSDQWYDRAC 100
>gi|302671526|ref|YP_003831486.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302395999|gb|ADL34904.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 186
Score = 34.5 bits (78), Expect = 10.0, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 37/160 (23%)
Query: 41 DRLSAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV- 99
+R + C FC + + +V+ D+I + + GR + EPLL
Sbjct: 60 NRCNGICSFCPVNR-NDDPREKAVMSVELFKDIIGQLEEM-QYSGRLTTFSNNEPLLDDR 117
Query: 100 DVPLIQALNKR--GFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQELKLVFPQVN 157
+ + + I + TNGT+ EL V ++
Sbjct: 118 IIEFNKYAKEHLPKARIHMYTNGTLFTLDKFK------------------ELVEVLDELI 159
Query: 158 VSPENYIGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK 197
+ N LQ + + + YC +P+
Sbjct: 160 IDNYNQE--------LQLI------KPVKEIVEYCEAHPE 185
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.314 0.150 0.558
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,818,031,110
Number of Sequences: 13984884
Number of extensions: 74101965
Number of successful extensions: 224895
Number of sequences better than 10.0: 4175
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 2751
Number of HSP's that attempted gapping in prelim test: 217323
Number of HSP's gapped (non-prelim): 4491
length of query: 211
length of database: 4,792,584,752
effective HSP length: 133
effective length of query: 78
effective length of database: 2,932,595,180
effective search space: 228742424040
effective search space used: 228742424040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 78 (34.5 bits)