RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] (211 letters) >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Length = 182 Score = 38.7 bits (89), Expect = 0.001 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 89 VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140 GGEPLL + + +++ ++G AV+T + + D Sbjct: 8 TFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLID 61 >2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc component; fructose specific IIB subunit, PFAM02379, structural genomics; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2 Length = 106 Score = 28.1 bits (63), Expect = 1.4 Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129 L + + G EI VETNG+ + Sbjct: 25 LKEKAKELGVEIKVETNGSSGIKHKLT 51 >3fr7_A Putative ketol-acid reductoisomerase (OS05G0573700 protein); rossmann fold, NADPH, knotted protein; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 Score = 28.4 bits (63), Expect = 1.4 Identities = 8/27 (29%), Positives = 13/27 (48%) Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKA 137 GF + + ++ P+ I I V PK Sbjct: 156 GFLLGHLQSAGLDFPKNISVIAVCPKG 182 >2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca component; PTS system, fructose specific IIB subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2 Length = 106 Score = 28.1 bits (63), Expect = 1.7 Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129 L +A ++ G I VET G I + Sbjct: 25 LQKAADRLGVSIKVETQGGIGVENKLT 51 >2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli} Length = 111 Score = 27.0 bits (60), Expect = 3.0 Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129 L +A + G+E+ +ET G + Sbjct: 28 LEEAAVEAGYEVKIETQGADGIQNRLT 54 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.8 bits (59), Expect = 3.3 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 50/105 (47%) Query: 22 RVAVFCRFSGCNLWSGREQ-----DRLSAQCRFCDT---------------DFVGIQGTK 61 ++ V+ F G +L R +R+ C DF G G Sbjct: 456 QIPVYDTFDGSDL---RVLSGSISERI-VDCIIRLPVKWETTTQFKATHILDF-GPGGAS 510 Query: 62 GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106 G L L K+G TG V +I A Sbjct: 511 G-------LGVLTHRN-----KDG-----TG--------VRVIVA 530 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 26.7 bits (58), Expect = 4.3 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 14/86 (16%) Query: 90 LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149 L GG LQ VP ++ + + VET+ + VS + + K+ G Sbjct: 727 LNGG---LQF-VPELKEFTAKLRKELVETSEVRK--------AVSIETALEHKVVNGNSA 774 Query: 150 KLVFPQVNVSPENYIGFDFERFSLQP 175 + QV + P I DF L+P Sbjct: 775 DAAYAQVEIQPRANIQLDFPE--LKP 798 >2he7_A BAND 4.1-like protein 3; FERM domain, DAL-1, EPB41L3A, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.00A {Homo sapiens} PDB: 3bin_A 1gg3_A 2rq1_A Length = 283 Score = 26.6 bits (58), Expect = 4.8 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 13/83 (15%) Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189 + V L I + F V I + F ++ G F + + + Sbjct: 205 MLGVCAS---GLLIYRDRLRINRFAWPKVL---KISYKRNNFYIKIRPGEFEQFESTI-- 256 Query: 190 SYCFQNPK-----WRLSVQTHKF 207 + N + W++ V+ H F Sbjct: 257 GFKLPNHRAAKRLWKVCVEHHTF 279 >3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459} Length = 189 Score = 25.9 bits (56), Expect = 7.1 Identities = 5/29 (17%), Positives = 14/29 (48%) Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWI 131 ++ + + GF+ A+ +N + I + Sbjct: 42 TLEKVKQLGFKQAILSNTATSDTEVIKRV 70 >1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292 Score = 25.7 bits (56), Expect = 7.6 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 56 GIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99 G+ G +G GR+ + AD I +W + G+ +LQ Sbjct: 97 GLVG-RGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQF 141 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.142 0.450 Gapped Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,930,822 Number of extensions: 88673 Number of successful extensions: 220 Number of sequences better than 10.0: 1 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 11 Length of query: 211 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 123 Effective length of database: 3,559,758 Effective search space: 437850234 Effective search space used: 437850234 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.1 bits)