RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780202|ref|YP_003064615.1| hypothetical protein
CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
         (211 letters)



>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI,
           MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
          Length = 182

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 89  VLTGGEPLLQVD--VPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCD 140
              GGEPLL  +  + +++   ++G   AV+T          + +        D
Sbjct: 8   TFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLID 61


>2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc
           component; fructose specific IIB subunit, PFAM02379,
           structural genomics; HET: MSE; 1.60A {Bacillus subtilis
           subsp} SCOP: c.44.2.2
          Length = 106

 Score = 28.1 bits (63), Expect = 1.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L +   + G EI VETNG+      + 
Sbjct: 25  LKEKAKELGVEIKVETNGSSGIKHKLT 51


>3fr7_A Putative ketol-acid reductoisomerase (OS05G0573700 protein);
           rossmann fold, NADPH, knotted protein; 1.55A {Oryza
           sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*
          Length = 525

 Score = 28.4 bits (63), Expect = 1.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 111 GFEIAVETNGTIEPPQGIDWICVSPKA 137
           GF +    +  ++ P+ I  I V PK 
Sbjct: 156 GFLLGHLQSAGLDFPKNISVIAVCPKG 182


>2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca
           component; PTS system, fructose specific IIB subunit,
           PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} SCOP:
           c.44.2.2
          Length = 106

 Score = 28.1 bits (63), Expect = 1.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L +A ++ G  I VET G I     + 
Sbjct: 25  LQKAADRLGVSIKVETQGGIGVENKLT 51


>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein,
           structural genomics, PSI-2; NMR {Escherichia coli}
          Length = 111

 Score = 27.0 bits (60), Expect = 3.0
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L +A  + G+E+ +ET G       + 
Sbjct: 28  LEEAAVEAGYEVKIETQGADGIQNRLT 54


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.8 bits (59), Expect = 3.3
 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 50/105 (47%)

Query: 22  RVAVFCRFSGCNLWSGREQ-----DRLSAQCRFCDT---------------DFVGIQGTK 61
           ++ V+  F G +L   R       +R+   C                    DF G  G  
Sbjct: 456 QIPVYDTFDGSDL---RVLSGSISERI-VDCIIRLPVKWETTTQFKATHILDF-GPGGAS 510

Query: 62  GGRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQA 106
           G       L  L         K+G     TG        V +I A
Sbjct: 511 G-------LGVLTHRN-----KDG-----TG--------VRVIVA 530


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 26.7 bits (58), Expect = 4.3
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 90  LTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQGIDWICVSPKAGCDLKIKGGQEL 149
           L GG   LQ  VP ++    +  +  VET+   +         VS +   + K+  G   
Sbjct: 727 LNGG---LQF-VPELKEFTAKLRKELVETSEVRK--------AVSIETALEHKVVNGNSA 774

Query: 150 KLVFPQVNVSPENYIGFDFERFSLQP 175
              + QV + P   I  DF    L+P
Sbjct: 775 DAAYAQVEIQPRANIQLDFPE--LKP 798


>2he7_A BAND 4.1-like protein 3; FERM domain, DAL-1, EPB41L3A, structural
           genomics, structural genomics consortium, SGC, cell
           adhesion; 2.00A {Homo sapiens} PDB: 3bin_A 1gg3_A 2rq1_A
          Length = 283

 Score = 26.6 bits (58), Expect = 4.8
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 130 WICVSPKAGCDLKIKGGQELKLVFPQVNVSPENYIGFDFERFSLQPMDGPFLEENTNLAI 189
            + V       L I   +     F    V     I +    F ++   G F +  + +  
Sbjct: 205 MLGVCAS---GLLIYRDRLRINRFAWPKVL---KISYKRNNFYIKIRPGEFEQFESTI-- 256

Query: 190 SYCFQNPK-----WRLSVQTHKF 207
            +   N +     W++ V+ H F
Sbjct: 257 GFKLPNHRAAKRLWKVCVEHHTF 279


>3ib6_A Uncharacterized protein; structural genomics, unknown function,
           PSI-2, protein structure initiative; 2.20A {Listeria
           monocytogenes CLIP81459}
          Length = 189

 Score = 25.9 bits (56), Expect = 7.1
 Identities = 5/29 (17%), Positives = 14/29 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGIDWI 131
            ++ + + GF+ A+ +N      + I  +
Sbjct: 42  TLEKVKQLGFKQAILSNTATSDTEVIKRV 70


>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
           HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
           1qvj_A*
          Length = 292

 Score = 25.7 bits (56), Expect = 7.6
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 56  GIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           G+ G +G  GR+  +  AD I  +W       +      G+ +LQ 
Sbjct: 97  GLVG-RGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQF 141


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,930,822
Number of extensions: 88673
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 11
Length of query: 211
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 123
Effective length of database: 3,559,758
Effective search space: 437850234
Effective search space used: 437850234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)