RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780202|ref|YP_003064615.1| hypothetical protein
CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62]
         (211 letters)



>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
           component FruA, middle domain {Bacillus subtilis [TaxId:
           1423]}
          Length = 103

 Score = 29.2 bits (66), Expect = 0.24
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L +   + G EI VETNG+      + 
Sbjct: 22  LKEKAKELGVEIKVETNGSSGIKHKLT 48


>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component
           ManP, N-terminal domain {Bacillus subtilis [TaxId:
           1423]}
          Length = 103

 Score = 28.9 bits (65), Expect = 0.31
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 103 LIQALNKRGFEIAVETNGTIEPPQGID 129
           L +A ++ G  I VET G I     + 
Sbjct: 22  LQKAADRLGVSIKVETQGGIGVENKLT 48


>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40,
           RRP40 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 26.6 bits (59), Expect = 1.6
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 96  LLQVDVPLIQALNKR-GFEIAVETNGTI 122
           LL  D  +IQ + K    EI    NG I
Sbjct: 15  LLAPDCEIIQEVGKLYPLEIVFGMNGRI 42


>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex,
          N-terminal domain {Thermus aquaticus [TaxId: 271]}
          Length = 74

 Score = 26.1 bits (58), Expect = 2.3
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 44 SAQCRFCDTDFVGIQGTKGGRYNVDQLADLIEE 76
          + Q R  D  + G  GT+G  Y V  L   +  
Sbjct: 39 AFQVRK-DLSYFGSYGTRGVGYTVPVLKRELRH 70


>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
           {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 13/128 (10%), Positives = 29/128 (22%), Gaps = 8/128 (6%)

Query: 15  GEGGHAGRVAVFCRF----SGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGG---RYNV 67
             GG    +A+                +    L       D  F               V
Sbjct: 91  ALGGRVN-LALVSNRRADEVFVLSPVRQGGRPLLGIRIGNDAFFTAHAIAMRNNDAPALV 149

Query: 68  DQLADLIEEQWITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIAVETNGTIEPPQG 127
           +++ +   +      +   + +L             +    +R  EI      T    + 
Sbjct: 150 EEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLTVPVRRASEIISPAAATQTSQRT 209

Query: 128 IDWICVSP 135
           +D+     
Sbjct: 210 LDYAVAGN 217


>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
           pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 292

 Score = 25.8 bits (56), Expect = 2.9
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 56  GIQGTKG--GRYNVDQLADLIEEQWITGEKEGRYCVLTGGEPLLQV 99
           G+ G +G  GR+  +  AD I  +W       +      G+ +LQ 
Sbjct: 97  GLVG-RGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQF 141


>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
           (Salmonella typhimurium) [TaxId: 90371]}
          Length = 413

 Score = 25.4 bits (55), Expect = 4.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 27  CRFSGCNLWSGREQDRLSAQCRFCDTDFVGIQGTKGGRYNVD 68
             F G  LW+G+  DR +    + D+D V + GT GG Y+V 
Sbjct: 105 GPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVK 146


>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 164 IGFDFERFSLQPMDGPFLEENTNLAISYCFQNPK-----WRLSVQTHKF 207
           I +    F ++   G   +E     I +   + +     W++ V+ H F
Sbjct: 44  ISYKRSSFFIKIRPGE--QEQYESTIGFKLPSYRAAKKLWKVCVEHHTF 90


>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus
           thermophilus [TaxId: 274]}
          Length = 106

 Score = 24.9 bits (54), Expect = 5.7
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 16/66 (24%)

Query: 79  ITGEKEGRYCVLTGGEPLLQVDVPLIQALNKRGFEIA----------------VETNGTI 122
              E   R   +T G PL ++ +  I  + +  F++                 + T+G++
Sbjct: 23  FVLEPLERGFGVTLGNPLRRILLSSIPPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSV 82

Query: 123 EPPQGI 128
            P + +
Sbjct: 83  TPLEAL 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 838,325
Number of extensions: 39177
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 10
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)